Multiple sequence alignment - TraesCS7A01G104900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G104900 chr7A 100.000 3398 0 0 1 3398 63722872 63726269 0.000000e+00 6276.0
1 TraesCS7A01G104900 chr7A 82.882 1402 220 17 985 2378 63503009 63501620 0.000000e+00 1242.0
2 TraesCS7A01G104900 chr7A 87.552 723 85 5 1245 1967 63733394 63732677 0.000000e+00 832.0
3 TraesCS7A01G104900 chr7A 92.148 433 33 1 1972 2403 63732704 63732272 8.060000e-171 610.0
4 TraesCS7A01G104900 chr7A 91.700 253 21 0 997 1249 63739148 63738896 5.390000e-93 351.0
5 TraesCS7A01G104900 chr7A 83.708 178 24 4 581 756 314609772 314609598 2.710000e-36 163.0
6 TraesCS7A01G104900 chr7D 94.851 1515 68 5 958 2466 59105538 59107048 0.000000e+00 2357.0
7 TraesCS7A01G104900 chr7D 90.513 1423 130 4 997 2418 59111730 59110312 0.000000e+00 1875.0
8 TraesCS7A01G104900 chr7D 83.405 1398 215 13 981 2372 58896560 58895174 0.000000e+00 1280.0
9 TraesCS7A01G104900 chr7D 95.517 580 23 1 1832 2411 58928859 58928283 0.000000e+00 924.0
10 TraesCS7A01G104900 chr4A 94.605 1520 73 6 958 2473 676880207 676878693 0.000000e+00 2344.0
11 TraesCS7A01G104900 chr4A 90.654 1423 128 4 997 2419 676932722 676931305 0.000000e+00 1886.0
12 TraesCS7A01G104900 chr4A 92.818 905 60 3 2495 3398 633024827 633025727 0.000000e+00 1306.0
13 TraesCS7A01G104900 chr4A 80.411 1363 223 29 1027 2370 676908763 676907426 0.000000e+00 998.0
14 TraesCS7A01G104900 chr4A 77.385 566 95 11 2 540 109863094 109863653 4.260000e-79 305.0
15 TraesCS7A01G104900 chr3A 93.142 904 56 4 2498 3398 697226464 697227364 0.000000e+00 1321.0
16 TraesCS7A01G104900 chr3A 92.044 905 66 4 2497 3398 444718262 444719163 0.000000e+00 1267.0
17 TraesCS7A01G104900 chr5A 92.605 906 60 5 2497 3398 657209533 657208631 0.000000e+00 1295.0
18 TraesCS7A01G104900 chr5A 91.300 908 72 4 2496 3398 71464650 71463745 0.000000e+00 1232.0
19 TraesCS7A01G104900 chr5A 82.105 190 17 8 581 753 22060777 22060588 2.730000e-31 147.0
20 TraesCS7A01G104900 chr6A 92.401 908 59 6 2496 3398 215029078 215028176 0.000000e+00 1286.0
21 TraesCS7A01G104900 chr6A 91.593 904 73 3 2496 3398 606772119 606773020 0.000000e+00 1245.0
22 TraesCS7A01G104900 chr6A 93.258 89 6 0 581 669 76667484 76667396 7.650000e-27 132.0
23 TraesCS7A01G104900 chr2A 91.862 897 65 7 2506 3398 44021518 44020626 0.000000e+00 1245.0
24 TraesCS7A01G104900 chr2A 81.250 192 20 10 581 756 173360391 173360200 1.270000e-29 141.0
25 TraesCS7A01G104900 chr2A 94.382 89 5 0 581 669 613139987 613140075 1.640000e-28 137.0
26 TraesCS7A01G104900 chr6B 91.492 905 74 2 2495 3398 705800568 705799666 0.000000e+00 1242.0
27 TraesCS7A01G104900 chr6B 83.938 193 13 10 581 755 535935392 535935584 5.830000e-38 169.0
28 TraesCS7A01G104900 chr4D 79.255 564 88 12 2 539 481620789 481620229 1.930000e-97 366.0
29 TraesCS7A01G104900 chr2D 78.230 565 95 10 2 540 536483324 536483886 1.510000e-88 337.0
30 TraesCS7A01G104900 chr2D 78.070 570 94 16 2 543 95181850 95181284 7.030000e-87 331.0
31 TraesCS7A01G104900 chr2D 76.321 549 95 17 2 524 644221209 644221748 9.350000e-66 261.0
32 TraesCS7A01G104900 chr2D 93.103 87 5 1 583 669 407952760 407952675 3.560000e-25 126.0
33 TraesCS7A01G104900 chr4B 77.876 565 94 14 4 540 491090421 491090982 4.230000e-84 322.0
34 TraesCS7A01G104900 chr5D 77.739 566 97 15 2 540 352845078 352845641 1.520000e-83 320.0
35 TraesCS7A01G104900 chr5D 77.231 549 102 17 3 540 524442886 524443422 1.980000e-77 300.0
36 TraesCS7A01G104900 chr5D 82.133 347 62 0 2 348 326381037 326380691 7.130000e-77 298.0
37 TraesCS7A01G104900 chr7B 81.894 359 63 2 2 359 669252663 669252306 5.510000e-78 302.0
38 TraesCS7A01G104900 chr7B 81.616 359 64 2 2 359 669186981 669186624 2.560000e-76 296.0
39 TraesCS7A01G104900 chr7B 75.528 568 113 12 2 543 6776754 6776187 4.350000e-64 255.0
40 TraesCS7A01G104900 chr7B 90.217 92 7 2 587 677 480338036 480337946 5.960000e-23 119.0
41 TraesCS7A01G104900 chr1A 78.571 210 33 7 2 211 362207795 362207598 9.900000e-26 128.0
42 TraesCS7A01G104900 chr1A 92.135 89 7 0 581 669 577987729 577987641 3.560000e-25 126.0
43 TraesCS7A01G104900 chr3D 97.059 34 1 0 789 822 471967247 471967214 1.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G104900 chr7A 63722872 63726269 3397 False 6276 6276 100.000 1 3398 1 chr7A.!!$F1 3397
1 TraesCS7A01G104900 chr7A 63501620 63503009 1389 True 1242 1242 82.882 985 2378 1 chr7A.!!$R1 1393
2 TraesCS7A01G104900 chr7A 63732272 63733394 1122 True 721 832 89.850 1245 2403 2 chr7A.!!$R4 1158
3 TraesCS7A01G104900 chr7D 59105538 59107048 1510 False 2357 2357 94.851 958 2466 1 chr7D.!!$F1 1508
4 TraesCS7A01G104900 chr7D 59110312 59111730 1418 True 1875 1875 90.513 997 2418 1 chr7D.!!$R3 1421
5 TraesCS7A01G104900 chr7D 58895174 58896560 1386 True 1280 1280 83.405 981 2372 1 chr7D.!!$R1 1391
6 TraesCS7A01G104900 chr7D 58928283 58928859 576 True 924 924 95.517 1832 2411 1 chr7D.!!$R2 579
7 TraesCS7A01G104900 chr4A 676878693 676880207 1514 True 2344 2344 94.605 958 2473 1 chr4A.!!$R1 1515
8 TraesCS7A01G104900 chr4A 676931305 676932722 1417 True 1886 1886 90.654 997 2419 1 chr4A.!!$R3 1422
9 TraesCS7A01G104900 chr4A 633024827 633025727 900 False 1306 1306 92.818 2495 3398 1 chr4A.!!$F2 903
10 TraesCS7A01G104900 chr4A 676907426 676908763 1337 True 998 998 80.411 1027 2370 1 chr4A.!!$R2 1343
11 TraesCS7A01G104900 chr4A 109863094 109863653 559 False 305 305 77.385 2 540 1 chr4A.!!$F1 538
12 TraesCS7A01G104900 chr3A 697226464 697227364 900 False 1321 1321 93.142 2498 3398 1 chr3A.!!$F2 900
13 TraesCS7A01G104900 chr3A 444718262 444719163 901 False 1267 1267 92.044 2497 3398 1 chr3A.!!$F1 901
14 TraesCS7A01G104900 chr5A 657208631 657209533 902 True 1295 1295 92.605 2497 3398 1 chr5A.!!$R3 901
15 TraesCS7A01G104900 chr5A 71463745 71464650 905 True 1232 1232 91.300 2496 3398 1 chr5A.!!$R2 902
16 TraesCS7A01G104900 chr6A 215028176 215029078 902 True 1286 1286 92.401 2496 3398 1 chr6A.!!$R2 902
17 TraesCS7A01G104900 chr6A 606772119 606773020 901 False 1245 1245 91.593 2496 3398 1 chr6A.!!$F1 902
18 TraesCS7A01G104900 chr2A 44020626 44021518 892 True 1245 1245 91.862 2506 3398 1 chr2A.!!$R1 892
19 TraesCS7A01G104900 chr6B 705799666 705800568 902 True 1242 1242 91.492 2495 3398 1 chr6B.!!$R1 903
20 TraesCS7A01G104900 chr4D 481620229 481620789 560 True 366 366 79.255 2 539 1 chr4D.!!$R1 537
21 TraesCS7A01G104900 chr2D 536483324 536483886 562 False 337 337 78.230 2 540 1 chr2D.!!$F1 538
22 TraesCS7A01G104900 chr2D 95181284 95181850 566 True 331 331 78.070 2 543 1 chr2D.!!$R1 541
23 TraesCS7A01G104900 chr2D 644221209 644221748 539 False 261 261 76.321 2 524 1 chr2D.!!$F2 522
24 TraesCS7A01G104900 chr4B 491090421 491090982 561 False 322 322 77.876 4 540 1 chr4B.!!$F1 536
25 TraesCS7A01G104900 chr5D 352845078 352845641 563 False 320 320 77.739 2 540 1 chr5D.!!$F1 538
26 TraesCS7A01G104900 chr5D 524442886 524443422 536 False 300 300 77.231 3 540 1 chr5D.!!$F2 537
27 TraesCS7A01G104900 chr7B 6776187 6776754 567 True 255 255 75.528 2 543 1 chr7B.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 473 0.034756 CACCGACAATGGACAGGTCA 59.965 55.0 1.41 0.0 32.04 4.02 F
953 958 0.038709 AAGCAGAGATATCGCCGCTC 60.039 55.0 16.25 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2392 2472 2.049156 CTCGCCACGAGCTCACAA 60.049 61.111 15.4 0.0 46.75 3.33 R
2483 2564 0.108329 GGCGTCCTTTCCGAATCTCA 60.108 55.000 0.0 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 1.442526 GCCGGCTTCATCATGGAGTG 61.443 60.000 22.15 0.00 0.00 3.51
132 135 1.141019 GCCAACGCCTCTATCGACA 59.859 57.895 0.00 0.00 0.00 4.35
152 156 0.970937 TTCCAGCAGACGTAGGAGGG 60.971 60.000 0.00 0.00 0.00 4.30
218 223 1.210672 GCTAGATCTACGGCGAGCC 59.789 63.158 16.62 3.59 0.00 4.70
272 277 1.214589 CGATCCCCAACTTCGTCGT 59.785 57.895 0.00 0.00 0.00 4.34
284 289 0.458197 TTCGTCGTGGAACAACGTGT 60.458 50.000 1.71 0.00 44.16 4.49
285 290 0.380024 TCGTCGTGGAACAACGTGTA 59.620 50.000 1.71 0.00 44.16 2.90
290 295 3.492011 GTCGTGGAACAACGTGTAATCTT 59.508 43.478 1.71 0.00 44.16 2.40
321 326 4.742201 GCTGAAGCCGCCACTCGA 62.742 66.667 0.00 0.00 41.67 4.04
324 329 3.112709 GAAGCCGCCACTCGACAC 61.113 66.667 0.00 0.00 41.67 3.67
330 335 2.355837 GCCACTCGACACGAAGCA 60.356 61.111 0.00 0.00 34.74 3.91
331 336 2.375766 GCCACTCGACACGAAGCAG 61.376 63.158 0.00 0.00 34.74 4.24
332 337 2.375766 CCACTCGACACGAAGCAGC 61.376 63.158 0.00 0.00 34.74 5.25
333 338 2.049063 ACTCGACACGAAGCAGCC 60.049 61.111 0.00 0.00 34.74 4.85
334 339 2.049156 CTCGACACGAAGCAGCCA 60.049 61.111 0.00 0.00 34.74 4.75
335 340 2.355837 TCGACACGAAGCAGCCAC 60.356 61.111 0.00 0.00 31.06 5.01
336 341 2.356313 CGACACGAAGCAGCCACT 60.356 61.111 0.00 0.00 0.00 4.00
337 342 2.661566 CGACACGAAGCAGCCACTG 61.662 63.158 0.00 0.00 34.12 3.66
366 371 3.109547 CTGCAGGCGAACGCGTTA 61.110 61.111 26.68 6.31 43.06 3.18
367 372 3.348967 CTGCAGGCGAACGCGTTAC 62.349 63.158 26.68 19.60 43.06 2.50
387 392 4.854784 GAGCTGCGCCGTCGATGA 62.855 66.667 4.18 0.00 38.10 2.92
388 393 4.435436 AGCTGCGCCGTCGATGAA 62.435 61.111 4.18 0.00 38.10 2.57
389 394 4.210304 GCTGCGCCGTCGATGAAC 62.210 66.667 4.18 0.00 38.10 3.18
390 395 3.554692 CTGCGCCGTCGATGAACC 61.555 66.667 4.18 0.00 38.10 3.62
391 396 4.365505 TGCGCCGTCGATGAACCA 62.366 61.111 4.18 0.00 38.10 3.67
392 397 2.890474 GCGCCGTCGATGAACCAT 60.890 61.111 6.11 0.00 38.10 3.55
393 398 2.871427 GCGCCGTCGATGAACCATC 61.871 63.158 6.11 0.00 37.50 3.51
394 399 1.518352 CGCCGTCGATGAACCATCA 60.518 57.895 6.11 0.00 40.54 3.07
395 400 1.482621 CGCCGTCGATGAACCATCAG 61.483 60.000 6.11 1.47 40.54 2.90
396 401 0.460284 GCCGTCGATGAACCATCAGT 60.460 55.000 6.11 0.00 40.54 3.41
397 402 1.560923 CCGTCGATGAACCATCAGTC 58.439 55.000 6.11 0.00 40.54 3.51
398 403 1.191944 CGTCGATGAACCATCAGTCG 58.808 55.000 0.00 6.10 40.54 4.18
399 404 1.560923 GTCGATGAACCATCAGTCGG 58.439 55.000 7.59 0.00 40.54 4.79
400 405 0.179111 TCGATGAACCATCAGTCGGC 60.179 55.000 7.59 0.00 40.54 5.54
401 406 1.154205 CGATGAACCATCAGTCGGCC 61.154 60.000 7.59 0.00 40.54 6.13
402 407 0.815615 GATGAACCATCAGTCGGCCC 60.816 60.000 0.00 0.00 40.28 5.80
403 408 2.511600 GAACCATCAGTCGGCCCG 60.512 66.667 0.00 0.00 0.00 6.13
404 409 3.000819 AACCATCAGTCGGCCCGA 61.001 61.111 0.00 0.00 0.00 5.14
405 410 2.311688 GAACCATCAGTCGGCCCGAT 62.312 60.000 10.04 0.00 38.42 4.18
406 411 2.280389 CCATCAGTCGGCCCGATG 60.280 66.667 10.04 9.15 38.42 3.84
407 412 2.280389 CATCAGTCGGCCCGATGG 60.280 66.667 10.04 4.70 38.42 3.51
415 420 3.467226 GGCCCGATGGGACGAAGA 61.467 66.667 5.94 0.00 43.30 2.87
416 421 3.735037 GGCCCGATGGGACGAAGAC 62.735 68.421 5.94 0.00 43.30 3.01
418 423 4.814900 CCGATGGGACGAAGACAG 57.185 61.111 0.00 0.00 34.06 3.51
419 424 1.519455 CCGATGGGACGAAGACAGC 60.519 63.158 0.00 0.00 34.06 4.40
420 425 1.874019 CGATGGGACGAAGACAGCG 60.874 63.158 0.00 0.00 37.67 5.18
421 426 1.215647 GATGGGACGAAGACAGCGT 59.784 57.895 0.00 0.00 45.79 5.07
437 442 4.101790 GTCGGCGCCACCATTGTG 62.102 66.667 28.98 7.38 42.39 3.33
446 451 2.543578 CACCATTGTGGACCTGACG 58.456 57.895 2.45 0.00 40.96 4.35
447 452 0.250295 CACCATTGTGGACCTGACGT 60.250 55.000 2.45 0.00 40.96 4.34
448 453 0.034896 ACCATTGTGGACCTGACGTC 59.965 55.000 9.11 9.11 40.96 4.34
455 460 2.257676 GACCTGACGTCCACCGAC 59.742 66.667 14.12 0.00 40.70 4.79
456 461 2.520020 ACCTGACGTCCACCGACA 60.520 61.111 14.12 0.00 39.11 4.35
457 462 2.079020 GACCTGACGTCCACCGACAA 62.079 60.000 14.12 0.00 40.51 3.18
458 463 1.292223 CCTGACGTCCACCGACAAT 59.708 57.895 14.12 0.00 40.51 2.71
459 464 1.014044 CCTGACGTCCACCGACAATG 61.014 60.000 14.12 0.00 40.51 2.82
460 465 1.005512 TGACGTCCACCGACAATGG 60.006 57.895 14.12 0.00 38.25 3.16
461 466 1.290955 GACGTCCACCGACAATGGA 59.709 57.895 3.51 0.00 44.20 3.41
465 470 1.676968 TCCACCGACAATGGACAGG 59.323 57.895 0.00 0.00 41.47 4.00
466 471 1.125093 TCCACCGACAATGGACAGGT 61.125 55.000 0.00 0.00 41.47 4.00
467 472 0.673644 CCACCGACAATGGACAGGTC 60.674 60.000 0.00 0.00 39.87 3.85
468 473 0.034756 CACCGACAATGGACAGGTCA 59.965 55.000 1.41 0.00 32.04 4.02
469 474 0.984230 ACCGACAATGGACAGGTCAT 59.016 50.000 1.41 0.00 0.00 3.06
470 475 1.066143 ACCGACAATGGACAGGTCATC 60.066 52.381 1.41 0.00 0.00 2.92
471 476 1.280982 CGACAATGGACAGGTCATCG 58.719 55.000 1.41 0.00 0.00 3.84
472 477 1.135112 CGACAATGGACAGGTCATCGA 60.135 52.381 1.41 0.00 0.00 3.59
473 478 2.271800 GACAATGGACAGGTCATCGAC 58.728 52.381 1.41 0.00 0.00 4.20
474 479 1.902508 ACAATGGACAGGTCATCGACT 59.097 47.619 1.41 0.00 32.47 4.18
475 480 2.093973 ACAATGGACAGGTCATCGACTC 60.094 50.000 1.41 0.00 32.47 3.36
476 481 1.115467 ATGGACAGGTCATCGACTCC 58.885 55.000 1.41 0.00 32.47 3.85
477 482 0.039764 TGGACAGGTCATCGACTCCT 59.960 55.000 1.41 0.00 29.41 3.69
478 483 1.187087 GGACAGGTCATCGACTCCTT 58.813 55.000 1.41 0.00 32.47 3.36
479 484 1.135333 GGACAGGTCATCGACTCCTTC 59.865 57.143 1.41 0.00 32.47 3.46
494 499 5.153950 ACTCCTTCGAGGATAAATATGCC 57.846 43.478 0.00 0.00 44.81 4.40
495 500 4.593206 ACTCCTTCGAGGATAAATATGCCA 59.407 41.667 0.00 0.00 44.81 4.92
496 501 4.894784 TCCTTCGAGGATAAATATGCCAC 58.105 43.478 0.00 0.00 40.06 5.01
497 502 3.679980 CCTTCGAGGATAAATATGCCACG 59.320 47.826 0.00 0.00 37.67 4.94
498 503 3.313012 TCGAGGATAAATATGCCACGG 57.687 47.619 0.00 0.00 0.00 4.94
499 504 2.894765 TCGAGGATAAATATGCCACGGA 59.105 45.455 0.00 0.00 0.00 4.69
500 505 3.322541 TCGAGGATAAATATGCCACGGAA 59.677 43.478 0.00 0.00 0.00 4.30
501 506 3.679980 CGAGGATAAATATGCCACGGAAG 59.320 47.826 0.00 0.00 0.00 3.46
502 507 4.003648 GAGGATAAATATGCCACGGAAGG 58.996 47.826 0.00 0.00 0.00 3.46
522 527 4.947147 GCGGTGCCTTGTGTCCCA 62.947 66.667 0.00 0.00 0.00 4.37
523 528 2.034066 CGGTGCCTTGTGTCCCAT 59.966 61.111 0.00 0.00 0.00 4.00
524 529 1.298340 CGGTGCCTTGTGTCCCATA 59.702 57.895 0.00 0.00 0.00 2.74
525 530 0.107214 CGGTGCCTTGTGTCCCATAT 60.107 55.000 0.00 0.00 0.00 1.78
526 531 1.392589 GGTGCCTTGTGTCCCATATG 58.607 55.000 0.00 0.00 0.00 1.78
527 532 1.064758 GGTGCCTTGTGTCCCATATGA 60.065 52.381 3.65 0.00 0.00 2.15
528 533 2.292267 GTGCCTTGTGTCCCATATGAG 58.708 52.381 3.65 0.00 0.00 2.90
529 534 1.312815 GCCTTGTGTCCCATATGAGC 58.687 55.000 3.65 0.00 0.00 4.26
530 535 1.972872 CCTTGTGTCCCATATGAGCC 58.027 55.000 3.65 0.00 0.00 4.70
531 536 1.586422 CTTGTGTCCCATATGAGCCG 58.414 55.000 3.65 0.00 0.00 5.52
532 537 1.138859 CTTGTGTCCCATATGAGCCGA 59.861 52.381 3.65 0.00 0.00 5.54
533 538 1.423584 TGTGTCCCATATGAGCCGAT 58.576 50.000 3.65 0.00 0.00 4.18
534 539 1.344438 TGTGTCCCATATGAGCCGATC 59.656 52.381 3.65 0.00 0.00 3.69
535 540 0.976641 TGTCCCATATGAGCCGATCC 59.023 55.000 3.65 0.00 0.00 3.36
536 541 0.108615 GTCCCATATGAGCCGATCCG 60.109 60.000 3.65 0.00 0.00 4.18
537 542 0.541998 TCCCATATGAGCCGATCCGT 60.542 55.000 3.65 0.00 0.00 4.69
538 543 0.108615 CCCATATGAGCCGATCCGTC 60.109 60.000 3.65 0.00 0.00 4.79
539 544 0.891373 CCATATGAGCCGATCCGTCT 59.109 55.000 3.65 0.00 0.00 4.18
540 545 1.273606 CCATATGAGCCGATCCGTCTT 59.726 52.381 3.65 0.00 0.00 3.01
541 546 2.600731 CATATGAGCCGATCCGTCTTC 58.399 52.381 0.00 0.00 0.00 2.87
542 547 0.959553 TATGAGCCGATCCGTCTTCC 59.040 55.000 0.00 0.00 0.00 3.46
543 548 1.043116 ATGAGCCGATCCGTCTTCCA 61.043 55.000 0.00 0.00 0.00 3.53
544 549 1.227002 GAGCCGATCCGTCTTCCAC 60.227 63.158 0.00 0.00 0.00 4.02
545 550 1.945354 GAGCCGATCCGTCTTCCACA 61.945 60.000 0.00 0.00 0.00 4.17
546 551 1.144057 GCCGATCCGTCTTCCACAT 59.856 57.895 0.00 0.00 0.00 3.21
547 552 0.462047 GCCGATCCGTCTTCCACATT 60.462 55.000 0.00 0.00 0.00 2.71
548 553 1.290203 CCGATCCGTCTTCCACATTG 58.710 55.000 0.00 0.00 0.00 2.82
549 554 0.652592 CGATCCGTCTTCCACATTGC 59.347 55.000 0.00 0.00 0.00 3.56
550 555 1.737838 GATCCGTCTTCCACATTGCA 58.262 50.000 0.00 0.00 0.00 4.08
551 556 1.667724 GATCCGTCTTCCACATTGCAG 59.332 52.381 0.00 0.00 0.00 4.41
552 557 0.684535 TCCGTCTTCCACATTGCAGA 59.315 50.000 0.00 0.00 0.00 4.26
553 558 0.798776 CCGTCTTCCACATTGCAGAC 59.201 55.000 0.00 0.00 33.61 3.51
554 559 1.511850 CGTCTTCCACATTGCAGACA 58.488 50.000 0.00 0.00 36.25 3.41
555 560 1.872952 CGTCTTCCACATTGCAGACAA 59.127 47.619 0.00 0.00 40.87 3.18
556 561 2.349817 CGTCTTCCACATTGCAGACAAC 60.350 50.000 0.00 0.00 38.99 3.32
557 562 2.618241 GTCTTCCACATTGCAGACAACA 59.382 45.455 0.00 0.00 38.99 3.33
558 563 3.254166 GTCTTCCACATTGCAGACAACAT 59.746 43.478 0.00 0.00 38.99 2.71
559 564 3.253921 TCTTCCACATTGCAGACAACATG 59.746 43.478 0.00 0.00 38.99 3.21
560 565 1.270274 TCCACATTGCAGACAACATGC 59.730 47.619 0.00 0.00 44.11 4.06
561 566 1.670674 CCACATTGCAGACAACATGCC 60.671 52.381 0.00 0.00 43.18 4.40
562 567 0.604578 ACATTGCAGACAACATGCCC 59.395 50.000 0.00 0.00 43.18 5.36
563 568 0.892755 CATTGCAGACAACATGCCCT 59.107 50.000 0.00 0.00 43.18 5.19
564 569 2.093890 CATTGCAGACAACATGCCCTA 58.906 47.619 0.00 0.00 43.18 3.53
565 570 1.825090 TTGCAGACAACATGCCCTAG 58.175 50.000 0.00 0.00 43.18 3.02
566 571 0.692476 TGCAGACAACATGCCCTAGT 59.308 50.000 0.00 0.00 43.18 2.57
567 572 1.339055 TGCAGACAACATGCCCTAGTC 60.339 52.381 0.00 0.00 43.18 2.59
568 573 1.339055 GCAGACAACATGCCCTAGTCA 60.339 52.381 0.00 0.00 37.73 3.41
569 574 2.681976 GCAGACAACATGCCCTAGTCAT 60.682 50.000 0.00 0.00 37.73 3.06
570 575 3.201290 CAGACAACATGCCCTAGTCATC 58.799 50.000 0.00 0.00 0.00 2.92
571 576 2.840038 AGACAACATGCCCTAGTCATCA 59.160 45.455 0.00 0.00 0.00 3.07
572 577 3.457380 AGACAACATGCCCTAGTCATCAT 59.543 43.478 0.00 0.00 0.00 2.45
573 578 3.812053 GACAACATGCCCTAGTCATCATC 59.188 47.826 0.00 0.00 0.00 2.92
574 579 3.200605 ACAACATGCCCTAGTCATCATCA 59.799 43.478 0.00 0.00 0.00 3.07
575 580 4.201657 CAACATGCCCTAGTCATCATCAA 58.798 43.478 0.00 0.00 0.00 2.57
576 581 4.719026 ACATGCCCTAGTCATCATCAAT 57.281 40.909 0.00 0.00 0.00 2.57
577 582 4.395625 ACATGCCCTAGTCATCATCAATG 58.604 43.478 0.00 0.00 36.65 2.82
578 583 4.103627 ACATGCCCTAGTCATCATCAATGA 59.896 41.667 0.00 0.00 42.21 2.57
579 584 4.776435 TGCCCTAGTCATCATCAATGAA 57.224 40.909 0.00 0.00 45.88 2.57
580 585 5.114764 TGCCCTAGTCATCATCAATGAAA 57.885 39.130 0.00 0.00 45.88 2.69
581 586 5.508567 TGCCCTAGTCATCATCAATGAAAA 58.491 37.500 0.00 0.00 45.88 2.29
582 587 6.131264 TGCCCTAGTCATCATCAATGAAAAT 58.869 36.000 0.00 0.00 45.88 1.82
583 588 6.040054 TGCCCTAGTCATCATCAATGAAAATG 59.960 38.462 0.00 0.00 45.88 2.32
584 589 6.444633 CCCTAGTCATCATCAATGAAAATGC 58.555 40.000 0.00 1.22 45.88 3.56
585 590 6.444633 CCTAGTCATCATCAATGAAAATGCC 58.555 40.000 0.00 0.00 45.88 4.40
586 591 6.264744 CCTAGTCATCATCAATGAAAATGCCT 59.735 38.462 0.00 1.62 45.88 4.75
587 592 6.540438 AGTCATCATCAATGAAAATGCCTT 57.460 33.333 0.00 0.00 45.88 4.35
588 593 6.942976 AGTCATCATCAATGAAAATGCCTTT 58.057 32.000 0.00 0.00 45.88 3.11
589 594 8.070034 AGTCATCATCAATGAAAATGCCTTTA 57.930 30.769 0.00 0.00 45.88 1.85
590 595 7.977853 AGTCATCATCAATGAAAATGCCTTTAC 59.022 33.333 0.00 0.00 45.88 2.01
591 596 7.977853 GTCATCATCAATGAAAATGCCTTTACT 59.022 33.333 0.00 0.00 45.88 2.24
592 597 7.977293 TCATCATCAATGAAAATGCCTTTACTG 59.023 33.333 0.00 0.00 41.49 2.74
593 598 6.101332 TCATCAATGAAAATGCCTTTACTGC 58.899 36.000 0.00 0.00 33.08 4.40
594 599 5.726980 TCAATGAAAATGCCTTTACTGCT 57.273 34.783 0.00 0.00 0.00 4.24
595 600 6.100404 TCAATGAAAATGCCTTTACTGCTT 57.900 33.333 0.00 0.00 0.00 3.91
596 601 5.927689 TCAATGAAAATGCCTTTACTGCTTG 59.072 36.000 0.00 0.00 0.00 4.01
597 602 4.935352 TGAAAATGCCTTTACTGCTTGT 57.065 36.364 0.00 0.00 0.00 3.16
598 603 6.588719 ATGAAAATGCCTTTACTGCTTGTA 57.411 33.333 0.00 0.00 0.00 2.41
599 604 6.398234 TGAAAATGCCTTTACTGCTTGTAA 57.602 33.333 0.02 0.02 39.17 2.41
600 605 6.991938 TGAAAATGCCTTTACTGCTTGTAAT 58.008 32.000 4.28 0.00 40.41 1.89
601 606 7.441017 TGAAAATGCCTTTACTGCTTGTAATT 58.559 30.769 4.28 0.00 40.41 1.40
602 607 7.930865 TGAAAATGCCTTTACTGCTTGTAATTT 59.069 29.630 4.28 2.13 40.41 1.82
603 608 8.675705 AAAATGCCTTTACTGCTTGTAATTTT 57.324 26.923 4.28 5.31 40.41 1.82
604 609 7.656707 AATGCCTTTACTGCTTGTAATTTTG 57.343 32.000 4.28 0.00 40.41 2.44
605 610 6.155475 TGCCTTTACTGCTTGTAATTTTGT 57.845 33.333 4.28 0.00 40.41 2.83
606 611 6.212955 TGCCTTTACTGCTTGTAATTTTGTC 58.787 36.000 4.28 0.00 40.41 3.18
607 612 5.633601 GCCTTTACTGCTTGTAATTTTGTCC 59.366 40.000 4.28 0.00 40.41 4.02
608 613 6.737346 GCCTTTACTGCTTGTAATTTTGTCCA 60.737 38.462 4.28 0.00 40.41 4.02
609 614 6.640907 CCTTTACTGCTTGTAATTTTGTCCAC 59.359 38.462 4.28 0.00 40.41 4.02
610 615 4.223320 ACTGCTTGTAATTTTGTCCACG 57.777 40.909 0.00 0.00 0.00 4.94
611 616 3.880490 ACTGCTTGTAATTTTGTCCACGA 59.120 39.130 0.00 0.00 0.00 4.35
612 617 4.024048 ACTGCTTGTAATTTTGTCCACGAG 60.024 41.667 0.00 0.00 0.00 4.18
613 618 3.880490 TGCTTGTAATTTTGTCCACGAGT 59.120 39.130 0.00 0.00 0.00 4.18
614 619 4.336993 TGCTTGTAATTTTGTCCACGAGTT 59.663 37.500 0.00 0.00 0.00 3.01
615 620 5.163602 TGCTTGTAATTTTGTCCACGAGTTT 60.164 36.000 0.00 0.00 0.00 2.66
616 621 6.038382 TGCTTGTAATTTTGTCCACGAGTTTA 59.962 34.615 0.00 0.00 0.00 2.01
617 622 6.577427 GCTTGTAATTTTGTCCACGAGTTTAG 59.423 38.462 0.00 0.00 0.00 1.85
618 623 6.548441 TGTAATTTTGTCCACGAGTTTAGG 57.452 37.500 0.00 0.00 0.00 2.69
619 624 6.289834 TGTAATTTTGTCCACGAGTTTAGGA 58.710 36.000 0.00 0.00 0.00 2.94
620 625 5.941948 AATTTTGTCCACGAGTTTAGGAG 57.058 39.130 0.00 0.00 30.78 3.69
621 626 2.450609 TTGTCCACGAGTTTAGGAGC 57.549 50.000 0.00 0.00 30.78 4.70
622 627 1.629043 TGTCCACGAGTTTAGGAGCT 58.371 50.000 0.00 0.00 30.78 4.09
623 628 1.544691 TGTCCACGAGTTTAGGAGCTC 59.455 52.381 4.71 4.71 30.78 4.09
631 636 4.763594 GAGTTTAGGAGCTCGAATTTCG 57.236 45.455 12.54 12.54 42.10 3.46
641 646 2.448926 TCGAATTTCGAGGCTCACAA 57.551 45.000 17.08 6.57 44.82 3.33
642 647 2.972625 TCGAATTTCGAGGCTCACAAT 58.027 42.857 17.08 8.72 44.82 2.71
643 648 2.930040 TCGAATTTCGAGGCTCACAATC 59.070 45.455 17.08 4.93 44.82 2.67
644 649 2.932614 CGAATTTCGAGGCTCACAATCT 59.067 45.455 15.95 3.36 43.74 2.40
645 650 3.000724 CGAATTTCGAGGCTCACAATCTC 59.999 47.826 15.95 10.19 43.74 2.75
647 652 0.458543 TTCGAGGCTCACAATCTCGC 60.459 55.000 15.95 0.00 46.72 5.03
648 653 1.140589 CGAGGCTCACAATCTCGCT 59.859 57.895 15.95 0.00 42.70 4.93
649 654 0.382158 CGAGGCTCACAATCTCGCTA 59.618 55.000 15.95 0.00 42.70 4.26
650 655 1.599171 CGAGGCTCACAATCTCGCTAG 60.599 57.143 15.95 0.00 42.70 3.42
651 656 0.749649 AGGCTCACAATCTCGCTAGG 59.250 55.000 0.00 0.00 0.00 3.02
652 657 0.878086 GGCTCACAATCTCGCTAGGC 60.878 60.000 0.00 0.00 0.00 3.93
653 658 0.179100 GCTCACAATCTCGCTAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
654 659 1.539929 GCTCACAATCTCGCTAGGCAT 60.540 52.381 0.00 0.00 0.00 4.40
655 660 2.133553 CTCACAATCTCGCTAGGCATG 58.866 52.381 0.00 0.00 0.00 4.06
656 661 0.585357 CACAATCTCGCTAGGCATGC 59.415 55.000 9.90 9.90 0.00 4.06
657 662 0.178767 ACAATCTCGCTAGGCATGCA 59.821 50.000 21.36 0.00 0.00 3.96
658 663 0.585357 CAATCTCGCTAGGCATGCAC 59.415 55.000 21.36 9.10 0.00 4.57
659 664 0.467384 AATCTCGCTAGGCATGCACT 59.533 50.000 21.36 16.19 0.00 4.40
660 665 0.467384 ATCTCGCTAGGCATGCACTT 59.533 50.000 21.36 6.93 0.00 3.16
661 666 0.250234 TCTCGCTAGGCATGCACTTT 59.750 50.000 21.36 4.24 0.00 2.66
662 667 1.089920 CTCGCTAGGCATGCACTTTT 58.910 50.000 21.36 1.60 0.00 2.27
663 668 0.804364 TCGCTAGGCATGCACTTTTG 59.196 50.000 21.36 4.36 0.00 2.44
672 677 4.065110 GCACTTTTGCTCGGAGGT 57.935 55.556 7.20 0.00 46.17 3.85
673 678 2.331265 GCACTTTTGCTCGGAGGTT 58.669 52.632 7.20 0.00 46.17 3.50
674 679 0.040067 GCACTTTTGCTCGGAGGTTG 60.040 55.000 7.20 0.00 46.17 3.77
675 680 0.593128 CACTTTTGCTCGGAGGTTGG 59.407 55.000 7.20 0.00 0.00 3.77
676 681 1.172812 ACTTTTGCTCGGAGGTTGGC 61.173 55.000 7.20 0.00 0.00 4.52
677 682 0.890996 CTTTTGCTCGGAGGTTGGCT 60.891 55.000 7.20 0.00 0.00 4.75
678 683 0.467290 TTTTGCTCGGAGGTTGGCTT 60.467 50.000 7.20 0.00 0.00 4.35
679 684 1.172180 TTTGCTCGGAGGTTGGCTTG 61.172 55.000 7.20 0.00 0.00 4.01
680 685 3.435186 GCTCGGAGGTTGGCTTGC 61.435 66.667 7.20 0.00 0.00 4.01
681 686 2.747855 CTCGGAGGTTGGCTTGCC 60.748 66.667 4.43 4.43 0.00 4.52
682 687 4.344865 TCGGAGGTTGGCTTGCCC 62.345 66.667 9.35 0.00 0.00 5.36
683 688 4.659172 CGGAGGTTGGCTTGCCCA 62.659 66.667 9.35 0.00 43.51 5.36
690 695 2.934369 TGGCTTGCCCAAGGAGTT 59.066 55.556 9.35 0.00 41.82 3.01
691 696 1.531365 TGGCTTGCCCAAGGAGTTG 60.531 57.895 9.35 0.00 41.82 3.16
692 697 1.228552 GGCTTGCCCAAGGAGTTGA 60.229 57.895 9.81 0.00 38.80 3.18
693 698 0.827507 GGCTTGCCCAAGGAGTTGAA 60.828 55.000 9.81 0.00 38.80 2.69
694 699 0.315251 GCTTGCCCAAGGAGTTGAAC 59.685 55.000 9.81 0.00 38.80 3.18
695 700 1.986882 CTTGCCCAAGGAGTTGAACT 58.013 50.000 0.00 0.00 35.46 3.01
696 701 2.310538 CTTGCCCAAGGAGTTGAACTT 58.689 47.619 0.00 0.00 35.46 2.66
697 702 1.981256 TGCCCAAGGAGTTGAACTTC 58.019 50.000 0.00 0.00 35.46 3.01
698 703 1.248486 GCCCAAGGAGTTGAACTTCC 58.752 55.000 0.00 2.56 35.46 3.46
699 704 1.202940 GCCCAAGGAGTTGAACTTCCT 60.203 52.381 0.00 4.96 35.46 3.36
700 705 2.753168 GCCCAAGGAGTTGAACTTCCTT 60.753 50.000 17.56 17.56 36.70 3.36
701 706 3.149981 CCCAAGGAGTTGAACTTCCTTC 58.850 50.000 19.35 0.69 35.23 3.46
702 707 3.149981 CCAAGGAGTTGAACTTCCTTCC 58.850 50.000 19.35 8.69 35.23 3.46
703 708 3.181439 CCAAGGAGTTGAACTTCCTTCCT 60.181 47.826 19.35 10.50 35.23 3.36
704 709 3.778954 AGGAGTTGAACTTCCTTCCTG 57.221 47.619 0.00 0.00 33.95 3.86
705 710 3.049344 AGGAGTTGAACTTCCTTCCTGT 58.951 45.455 0.00 0.00 33.95 4.00
706 711 4.232091 AGGAGTTGAACTTCCTTCCTGTA 58.768 43.478 0.00 0.00 33.95 2.74
707 712 4.658901 AGGAGTTGAACTTCCTTCCTGTAA 59.341 41.667 0.00 0.00 33.95 2.41
708 713 4.755629 GGAGTTGAACTTCCTTCCTGTAAC 59.244 45.833 0.00 0.00 0.00 2.50
709 714 5.454897 GGAGTTGAACTTCCTTCCTGTAACT 60.455 44.000 0.00 0.00 28.70 2.24
710 715 5.368989 AGTTGAACTTCCTTCCTGTAACTG 58.631 41.667 0.00 0.00 0.00 3.16
711 716 5.104485 AGTTGAACTTCCTTCCTGTAACTGT 60.104 40.000 0.00 0.00 0.00 3.55
712 717 5.367945 TGAACTTCCTTCCTGTAACTGTT 57.632 39.130 0.00 0.00 0.00 3.16
713 718 5.751586 TGAACTTCCTTCCTGTAACTGTTT 58.248 37.500 0.00 0.00 0.00 2.83
714 719 5.820947 TGAACTTCCTTCCTGTAACTGTTTC 59.179 40.000 0.00 0.00 0.00 2.78
715 720 4.377897 ACTTCCTTCCTGTAACTGTTTCG 58.622 43.478 0.00 0.00 0.00 3.46
716 721 4.100498 ACTTCCTTCCTGTAACTGTTTCGA 59.900 41.667 0.00 0.00 0.00 3.71
717 722 3.986277 TCCTTCCTGTAACTGTTTCGAC 58.014 45.455 0.00 0.00 0.00 4.20
718 723 3.385433 TCCTTCCTGTAACTGTTTCGACA 59.615 43.478 0.00 0.00 0.00 4.35
719 724 4.124238 CCTTCCTGTAACTGTTTCGACAA 58.876 43.478 0.00 0.00 0.00 3.18
720 725 4.755123 CCTTCCTGTAACTGTTTCGACAAT 59.245 41.667 0.00 0.00 0.00 2.71
721 726 5.107065 CCTTCCTGTAACTGTTTCGACAATC 60.107 44.000 0.00 0.00 0.00 2.67
722 727 5.209818 TCCTGTAACTGTTTCGACAATCT 57.790 39.130 0.00 0.00 0.00 2.40
723 728 6.335471 TCCTGTAACTGTTTCGACAATCTA 57.665 37.500 0.00 0.00 0.00 1.98
724 729 6.751157 TCCTGTAACTGTTTCGACAATCTAA 58.249 36.000 0.00 0.00 0.00 2.10
725 730 7.211573 TCCTGTAACTGTTTCGACAATCTAAA 58.788 34.615 0.00 0.00 0.00 1.85
726 731 7.876068 TCCTGTAACTGTTTCGACAATCTAAAT 59.124 33.333 0.00 0.00 0.00 1.40
727 732 9.146984 CCTGTAACTGTTTCGACAATCTAAATA 57.853 33.333 0.00 0.00 0.00 1.40
731 736 8.950403 AACTGTTTCGACAATCTAAATAAAGC 57.050 30.769 0.00 0.00 0.00 3.51
732 737 7.527457 ACTGTTTCGACAATCTAAATAAAGCC 58.473 34.615 0.00 0.00 0.00 4.35
733 738 6.848451 TGTTTCGACAATCTAAATAAAGCCC 58.152 36.000 0.00 0.00 0.00 5.19
734 739 5.728351 TTCGACAATCTAAATAAAGCCCG 57.272 39.130 0.00 0.00 0.00 6.13
735 740 4.124238 TCGACAATCTAAATAAAGCCCGG 58.876 43.478 0.00 0.00 0.00 5.73
736 741 3.303791 CGACAATCTAAATAAAGCCCGGC 60.304 47.826 0.00 0.00 0.00 6.13
737 742 2.616842 ACAATCTAAATAAAGCCCGGCG 59.383 45.455 3.05 0.00 0.00 6.46
738 743 2.875933 CAATCTAAATAAAGCCCGGCGA 59.124 45.455 9.30 0.00 0.00 5.54
739 744 2.234300 TCTAAATAAAGCCCGGCGAG 57.766 50.000 9.30 0.00 0.00 5.03
740 745 1.758280 TCTAAATAAAGCCCGGCGAGA 59.242 47.619 9.30 0.00 0.00 4.04
741 746 2.168936 TCTAAATAAAGCCCGGCGAGAA 59.831 45.455 9.30 0.00 0.00 2.87
742 747 2.052782 AAATAAAGCCCGGCGAGAAT 57.947 45.000 9.30 0.00 0.00 2.40
743 748 1.308998 AATAAAGCCCGGCGAGAATG 58.691 50.000 9.30 0.00 0.00 2.67
744 749 0.180406 ATAAAGCCCGGCGAGAATGT 59.820 50.000 9.30 0.00 0.00 2.71
745 750 0.461339 TAAAGCCCGGCGAGAATGTC 60.461 55.000 9.30 0.00 0.00 3.06
746 751 2.185310 AAAGCCCGGCGAGAATGTCT 62.185 55.000 9.30 0.00 0.00 3.41
747 752 1.327690 AAGCCCGGCGAGAATGTCTA 61.328 55.000 9.30 0.00 0.00 2.59
748 753 1.143183 GCCCGGCGAGAATGTCTAA 59.857 57.895 9.30 0.00 0.00 2.10
749 754 0.461339 GCCCGGCGAGAATGTCTAAA 60.461 55.000 9.30 0.00 0.00 1.85
750 755 2.010043 GCCCGGCGAGAATGTCTAAAA 61.010 52.381 9.30 0.00 0.00 1.52
751 756 2.352388 CCCGGCGAGAATGTCTAAAAA 58.648 47.619 9.30 0.00 0.00 1.94
775 780 7.862512 AAAATGAAAATGCCAGTTTTTCTGA 57.137 28.000 9.50 0.00 46.27 3.27
776 781 7.862512 AAATGAAAATGCCAGTTTTTCTGAA 57.137 28.000 9.50 0.00 46.27 3.02
777 782 7.862512 AATGAAAATGCCAGTTTTTCTGAAA 57.137 28.000 0.00 0.00 46.27 2.69
778 783 7.862512 ATGAAAATGCCAGTTTTTCTGAAAA 57.137 28.000 11.33 11.33 46.27 2.29
779 784 7.678947 TGAAAATGCCAGTTTTTCTGAAAAA 57.321 28.000 20.98 20.98 46.27 1.94
850 855 9.968870 AGAAAAATATCGAGTAGATTACACTCC 57.031 33.333 0.00 0.00 39.43 3.85
851 856 9.745880 GAAAAATATCGAGTAGATTACACTCCA 57.254 33.333 0.00 0.00 39.43 3.86
853 858 9.751542 AAAATATCGAGTAGATTACACTCCAAG 57.248 33.333 0.00 0.00 39.43 3.61
854 859 8.693120 AATATCGAGTAGATTACACTCCAAGA 57.307 34.615 0.00 0.00 39.43 3.02
855 860 8.871629 ATATCGAGTAGATTACACTCCAAGAT 57.128 34.615 0.00 0.00 39.43 2.40
856 861 6.621316 TCGAGTAGATTACACTCCAAGATC 57.379 41.667 0.00 0.00 39.43 2.75
857 862 6.120220 TCGAGTAGATTACACTCCAAGATCA 58.880 40.000 0.00 0.00 39.43 2.92
858 863 6.038382 TCGAGTAGATTACACTCCAAGATCAC 59.962 42.308 0.00 0.00 39.43 3.06
859 864 6.137794 AGTAGATTACACTCCAAGATCACG 57.862 41.667 0.00 0.00 0.00 4.35
860 865 3.786635 AGATTACACTCCAAGATCACGC 58.213 45.455 0.00 0.00 0.00 5.34
861 866 3.449018 AGATTACACTCCAAGATCACGCT 59.551 43.478 0.00 0.00 0.00 5.07
862 867 3.678056 TTACACTCCAAGATCACGCTT 57.322 42.857 0.00 0.00 0.00 4.68
863 868 4.794278 TTACACTCCAAGATCACGCTTA 57.206 40.909 0.00 0.00 0.00 3.09
864 869 3.238108 ACACTCCAAGATCACGCTTAG 57.762 47.619 0.00 0.00 0.00 2.18
865 870 1.929836 CACTCCAAGATCACGCTTAGC 59.070 52.381 0.00 0.00 0.00 3.09
866 871 1.827969 ACTCCAAGATCACGCTTAGCT 59.172 47.619 1.76 0.00 0.00 3.32
867 872 3.024547 ACTCCAAGATCACGCTTAGCTA 58.975 45.455 1.76 0.00 0.00 3.32
868 873 3.181485 ACTCCAAGATCACGCTTAGCTAC 60.181 47.826 1.76 0.00 0.00 3.58
869 874 2.100916 TCCAAGATCACGCTTAGCTACC 59.899 50.000 1.76 0.00 0.00 3.18
870 875 2.159099 CCAAGATCACGCTTAGCTACCA 60.159 50.000 1.76 0.00 0.00 3.25
871 876 3.521560 CAAGATCACGCTTAGCTACCAA 58.478 45.455 1.76 0.00 0.00 3.67
872 877 3.887621 AGATCACGCTTAGCTACCAAA 57.112 42.857 1.76 0.00 0.00 3.28
873 878 3.786635 AGATCACGCTTAGCTACCAAAG 58.213 45.455 1.76 0.00 0.00 2.77
874 879 3.447586 AGATCACGCTTAGCTACCAAAGA 59.552 43.478 1.76 0.00 0.00 2.52
875 880 2.955614 TCACGCTTAGCTACCAAAGAC 58.044 47.619 1.76 0.00 0.00 3.01
876 881 2.561419 TCACGCTTAGCTACCAAAGACT 59.439 45.455 1.76 0.00 0.00 3.24
877 882 3.006537 TCACGCTTAGCTACCAAAGACTT 59.993 43.478 1.76 0.00 0.00 3.01
878 883 3.368236 CACGCTTAGCTACCAAAGACTTC 59.632 47.826 1.76 0.00 0.00 3.01
879 884 3.258622 ACGCTTAGCTACCAAAGACTTCT 59.741 43.478 1.76 0.00 0.00 2.85
880 885 4.246458 CGCTTAGCTACCAAAGACTTCTT 58.754 43.478 1.76 0.00 37.91 2.52
881 886 4.691216 CGCTTAGCTACCAAAGACTTCTTT 59.309 41.667 1.76 0.00 46.23 2.52
882 887 5.867716 CGCTTAGCTACCAAAGACTTCTTTA 59.132 40.000 1.76 0.00 43.72 1.85
883 888 6.535508 CGCTTAGCTACCAAAGACTTCTTTAT 59.464 38.462 1.76 0.00 43.72 1.40
884 889 7.464710 CGCTTAGCTACCAAAGACTTCTTTATG 60.465 40.741 1.76 2.21 43.72 1.90
885 890 7.611213 TTAGCTACCAAAGACTTCTTTATGC 57.389 36.000 3.91 6.61 43.72 3.14
886 891 5.560724 AGCTACCAAAGACTTCTTTATGCA 58.439 37.500 3.91 0.00 43.72 3.96
887 892 5.645497 AGCTACCAAAGACTTCTTTATGCAG 59.355 40.000 3.91 1.40 43.72 4.41
888 893 5.643777 GCTACCAAAGACTTCTTTATGCAGA 59.356 40.000 3.91 0.00 43.72 4.26
889 894 6.183360 GCTACCAAAGACTTCTTTATGCAGAG 60.183 42.308 3.91 0.00 43.72 3.35
890 895 5.625150 ACCAAAGACTTCTTTATGCAGAGT 58.375 37.500 3.91 0.00 43.72 3.24
891 896 5.471456 ACCAAAGACTTCTTTATGCAGAGTG 59.529 40.000 3.91 0.00 43.72 3.51
892 897 5.471456 CCAAAGACTTCTTTATGCAGAGTGT 59.529 40.000 3.91 0.00 43.72 3.55
893 898 6.650807 CCAAAGACTTCTTTATGCAGAGTGTA 59.349 38.462 3.91 0.00 43.72 2.90
894 899 7.148507 CCAAAGACTTCTTTATGCAGAGTGTAG 60.149 40.741 3.91 0.00 43.72 2.74
895 900 6.597832 AGACTTCTTTATGCAGAGTGTAGT 57.402 37.500 0.00 0.00 0.00 2.73
896 901 6.626302 AGACTTCTTTATGCAGAGTGTAGTC 58.374 40.000 11.52 11.52 0.00 2.59
897 902 6.209589 AGACTTCTTTATGCAGAGTGTAGTCA 59.790 38.462 17.49 0.00 32.77 3.41
898 903 6.159988 ACTTCTTTATGCAGAGTGTAGTCAC 58.840 40.000 0.00 0.00 44.15 3.67
899 904 5.073311 TCTTTATGCAGAGTGTAGTCACC 57.927 43.478 0.00 0.00 44.83 4.02
900 905 3.503827 TTATGCAGAGTGTAGTCACCG 57.496 47.619 0.00 0.00 44.83 4.94
901 906 0.108615 ATGCAGAGTGTAGTCACCGC 60.109 55.000 0.00 0.00 44.83 5.68
902 907 1.179174 TGCAGAGTGTAGTCACCGCT 61.179 55.000 0.00 0.00 44.83 5.52
903 908 0.734253 GCAGAGTGTAGTCACCGCTG 60.734 60.000 11.63 11.63 44.83 5.18
904 909 0.881796 CAGAGTGTAGTCACCGCTGA 59.118 55.000 10.92 0.00 43.64 4.26
905 910 0.882474 AGAGTGTAGTCACCGCTGAC 59.118 55.000 2.49 2.49 46.50 3.51
911 916 3.106407 GTCACCGCTGACGCAGAC 61.106 66.667 10.46 2.34 37.67 3.51
917 922 3.177920 GCTGACGCAGACGCAGAG 61.178 66.667 10.46 0.00 45.53 3.35
918 923 2.256764 CTGACGCAGACGCAGAGT 59.743 61.111 1.18 0.00 45.53 3.24
919 924 2.050077 TGACGCAGACGCAGAGTG 60.050 61.111 0.00 0.00 45.53 3.51
920 925 3.474034 GACGCAGACGCAGAGTGC 61.474 66.667 0.00 0.00 45.53 4.40
921 926 3.905705 GACGCAGACGCAGAGTGCT 62.906 63.158 0.00 0.00 45.53 4.40
922 927 3.177920 CGCAGACGCAGAGTGCTC 61.178 66.667 0.00 0.00 42.25 4.26
923 928 2.261052 GCAGACGCAGAGTGCTCT 59.739 61.111 0.00 0.00 42.25 4.09
931 936 3.268986 AGAGTGCTCTGTCCGACG 58.731 61.111 0.28 0.00 38.75 5.12
932 937 1.302591 AGAGTGCTCTGTCCGACGA 60.303 57.895 0.28 0.00 38.75 4.20
933 938 0.678366 AGAGTGCTCTGTCCGACGAT 60.678 55.000 0.28 0.00 38.75 3.73
934 939 1.015109 GAGTGCTCTGTCCGACGATA 58.985 55.000 0.00 0.00 0.00 2.92
935 940 1.400846 GAGTGCTCTGTCCGACGATAA 59.599 52.381 0.00 0.00 0.00 1.75
936 941 1.402259 AGTGCTCTGTCCGACGATAAG 59.598 52.381 0.00 0.00 0.00 1.73
937 942 0.100682 TGCTCTGTCCGACGATAAGC 59.899 55.000 0.00 7.10 0.00 3.09
938 943 0.100682 GCTCTGTCCGACGATAAGCA 59.899 55.000 0.00 0.00 0.00 3.91
939 944 1.862008 GCTCTGTCCGACGATAAGCAG 60.862 57.143 0.00 0.00 0.00 4.24
940 945 1.671328 CTCTGTCCGACGATAAGCAGA 59.329 52.381 0.00 1.93 0.00 4.26
941 946 1.671328 TCTGTCCGACGATAAGCAGAG 59.329 52.381 0.00 0.00 0.00 3.35
942 947 1.671328 CTGTCCGACGATAAGCAGAGA 59.329 52.381 0.00 0.00 0.00 3.10
943 948 2.292016 CTGTCCGACGATAAGCAGAGAT 59.708 50.000 0.00 0.00 0.00 2.75
944 949 3.473625 TGTCCGACGATAAGCAGAGATA 58.526 45.455 0.00 0.00 0.00 1.98
945 950 4.072839 TGTCCGACGATAAGCAGAGATAT 58.927 43.478 0.00 0.00 0.00 1.63
946 951 4.154375 TGTCCGACGATAAGCAGAGATATC 59.846 45.833 0.00 0.00 0.00 1.63
950 955 2.445316 CGATAAGCAGAGATATCGCCG 58.555 52.381 2.49 0.00 42.81 6.46
951 956 2.189342 GATAAGCAGAGATATCGCCGC 58.811 52.381 6.56 6.56 0.00 6.53
952 957 1.248486 TAAGCAGAGATATCGCCGCT 58.752 50.000 10.99 10.99 0.00 5.52
953 958 0.038709 AAGCAGAGATATCGCCGCTC 60.039 55.000 16.25 0.00 0.00 5.03
954 959 1.445238 GCAGAGATATCGCCGCTCC 60.445 63.158 7.35 0.00 0.00 4.70
955 960 1.872197 GCAGAGATATCGCCGCTCCT 61.872 60.000 7.35 0.00 0.00 3.69
956 961 0.109365 CAGAGATATCGCCGCTCCTG 60.109 60.000 2.49 0.00 0.00 3.86
1025 1036 4.742201 GGAGCGCTTCGACCTGCA 62.742 66.667 13.26 0.00 0.00 4.41
2022 2042 0.176680 CTTCGGTGATGACCAGGGAG 59.823 60.000 1.19 0.00 43.33 4.30
2403 2483 3.481009 CTCTCGTTTGTGAGCTCGT 57.519 52.632 9.64 0.00 35.90 4.18
2428 2509 1.905215 AGCAGTGCTGTGGTTCTCTAT 59.095 47.619 18.98 0.00 37.57 1.98
2429 2510 2.093764 AGCAGTGCTGTGGTTCTCTATC 60.094 50.000 18.98 0.00 37.57 2.08
2430 2511 2.093764 GCAGTGCTGTGGTTCTCTATCT 60.094 50.000 8.18 0.00 0.00 1.98
2431 2512 3.131223 GCAGTGCTGTGGTTCTCTATCTA 59.869 47.826 8.18 0.00 0.00 1.98
2438 2519 7.010923 GTGCTGTGGTTCTCTATCTAGAAATTG 59.989 40.741 0.00 0.00 37.24 2.32
2445 2526 9.315525 GGTTCTCTATCTAGAAATTGTGTAACC 57.684 37.037 0.00 0.67 37.24 2.85
2449 2530 9.522804 CTCTATCTAGAAATTGTGTAACCTGTC 57.477 37.037 0.00 0.00 34.36 3.51
2453 2534 5.209818 AGAAATTGTGTAACCTGTCGAGA 57.790 39.130 0.00 0.00 34.36 4.04
2466 2547 9.130312 GTAACCTGTCGAGATCATTCATAATAC 57.870 37.037 0.00 0.00 0.00 1.89
2467 2548 7.531857 ACCTGTCGAGATCATTCATAATACT 57.468 36.000 0.00 0.00 0.00 2.12
2468 2549 8.637196 ACCTGTCGAGATCATTCATAATACTA 57.363 34.615 0.00 0.00 0.00 1.82
2514 2595 2.511600 GACGCCGCTAACTGCCAT 60.512 61.111 0.00 0.00 38.78 4.40
2519 2600 0.249155 GCCGCTAACTGCCATACGTA 60.249 55.000 0.00 0.00 38.78 3.57
2529 2610 7.921214 GCTAACTGCCATACGTATGACATATAT 59.079 37.037 32.19 16.84 35.75 0.86
2564 2645 0.825410 ACCGTGTGTGGTGTGAGTAA 59.175 50.000 0.00 0.00 41.85 2.24
2592 2675 3.315765 CACACGGGTTGTATGTGGT 57.684 52.632 0.00 0.00 40.05 4.16
2805 2890 6.485648 GGGATGACAAGTGTAGTTGTAAAAGT 59.514 38.462 5.15 0.00 40.83 2.66
2815 2900 8.152246 AGTGTAGTTGTAAAAGTATGGCAACTA 58.848 33.333 10.27 10.27 45.12 2.24
2822 2908 9.899661 TTGTAAAAGTATGGCAACTATATCTGT 57.100 29.630 0.00 0.00 37.61 3.41
2823 2909 9.899661 TGTAAAAGTATGGCAACTATATCTGTT 57.100 29.630 0.00 0.00 37.61 3.16
2911 2997 3.744426 GCCGTGTGTGATTAACTACTTGT 59.256 43.478 0.00 0.00 0.00 3.16
2942 3028 4.202111 GGTCAAAACAGTAGTTGCCATGTT 60.202 41.667 0.00 0.00 38.17 2.71
2950 3036 5.592688 ACAGTAGTTGCCATGTTTGTTTACT 59.407 36.000 0.00 0.00 0.00 2.24
3025 3111 4.469657 ACCATGTGTGTTTATCTGGTTGT 58.530 39.130 0.00 0.00 33.30 3.32
3101 3188 0.598158 GTACCGAGTTGCCACGTTCA 60.598 55.000 0.00 0.00 0.00 3.18
3133 3220 0.179137 TGCCGTGTAGCAGAGAATCG 60.179 55.000 0.00 0.00 42.67 3.34
3164 3256 2.356553 TGTACCGAGTTGCCACGC 60.357 61.111 0.00 0.00 0.00 5.34
3189 3281 0.036164 TAACTGCAGTTGCCGTCCAT 59.964 50.000 36.50 14.11 37.51 3.41
3284 3377 0.466543 ACTAGTTCGCCCACACAACA 59.533 50.000 0.00 0.00 0.00 3.33
3292 3385 1.453745 CCCACACAACACAGCTGGT 60.454 57.895 19.93 10.36 0.00 4.00
3326 3419 1.616374 CGGGCATGTGGGTAAACTTTT 59.384 47.619 0.00 0.00 0.00 2.27
3342 3435 1.994507 TTTTCAACGCCCACACACCG 61.995 55.000 0.00 0.00 0.00 4.94
3344 3437 2.668185 TTCAACGCCCACACACCGAT 62.668 55.000 0.00 0.00 0.00 4.18
3347 3440 4.082523 CGCCCACACACCGATCCT 62.083 66.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.170290 TGTCGTCGAAGCCAGTCTCA 61.170 55.000 0.00 0.00 0.00 3.27
59 60 3.080641 CCTGTGCCCACTCCATGA 58.919 61.111 0.00 0.00 0.00 3.07
68 69 4.697756 TGTAGTGCGCCTGTGCCC 62.698 66.667 4.18 0.00 0.00 5.36
126 129 0.532573 ACGTCTGCTGGAATGTCGAT 59.467 50.000 0.00 0.00 0.00 3.59
132 135 1.115467 CCTCCTACGTCTGCTGGAAT 58.885 55.000 0.00 0.00 0.00 3.01
152 156 4.215613 GGAGAAACAGGTTGTACCATTGTC 59.784 45.833 0.00 0.00 41.95 3.18
171 175 1.754621 CCGGTGCTGCTCTAGGAGA 60.755 63.158 2.30 0.00 35.31 3.71
198 202 1.516365 GCTCGCCGTAGATCTAGCCA 61.516 60.000 1.64 0.00 0.00 4.75
272 277 3.979948 TCGAAGATTACACGTTGTTCCA 58.020 40.909 0.00 0.00 0.00 3.53
307 312 3.112709 GTGTCGAGTGGCGGCTTC 61.113 66.667 11.43 7.26 46.81 3.86
316 321 2.049063 GGCTGCTTCGTGTCGAGT 60.049 61.111 0.00 0.00 37.14 4.18
349 354 3.109547 TAACGCGTTCGCCTGCAG 61.110 61.111 30.28 6.78 39.84 4.41
350 355 3.408020 GTAACGCGTTCGCCTGCA 61.408 61.111 30.28 5.92 39.84 4.41
351 356 4.479121 CGTAACGCGTTCGCCTGC 62.479 66.667 30.28 6.85 39.84 4.85
352 357 4.479121 GCGTAACGCGTTCGCCTG 62.479 66.667 36.17 22.69 44.55 4.85
373 378 3.554692 GGTTCATCGACGGCGCAG 61.555 66.667 5.31 8.25 37.46 5.18
374 379 3.657448 ATGGTTCATCGACGGCGCA 62.657 57.895 5.31 0.00 37.46 6.09
375 380 2.871427 GATGGTTCATCGACGGCGC 61.871 63.158 5.31 0.00 37.46 6.53
376 381 1.482621 CTGATGGTTCATCGACGGCG 61.483 60.000 2.87 2.87 43.14 6.46
377 382 0.460284 ACTGATGGTTCATCGACGGC 60.460 55.000 0.00 0.00 43.14 5.68
378 383 1.560923 GACTGATGGTTCATCGACGG 58.439 55.000 0.00 0.00 43.14 4.79
379 384 1.191944 CGACTGATGGTTCATCGACG 58.808 55.000 0.00 0.00 43.14 5.12
380 385 1.560923 CCGACTGATGGTTCATCGAC 58.439 55.000 0.00 0.10 43.14 4.20
381 386 0.179111 GCCGACTGATGGTTCATCGA 60.179 55.000 0.00 0.00 43.14 3.59
382 387 1.154205 GGCCGACTGATGGTTCATCG 61.154 60.000 0.00 0.00 43.14 3.84
383 388 0.815615 GGGCCGACTGATGGTTCATC 60.816 60.000 0.00 1.28 40.88 2.92
384 389 1.224592 GGGCCGACTGATGGTTCAT 59.775 57.895 0.00 0.00 0.00 2.57
385 390 2.668632 GGGCCGACTGATGGTTCA 59.331 61.111 0.00 0.00 0.00 3.18
386 391 2.311688 ATCGGGCCGACTGATGGTTC 62.312 60.000 33.71 0.00 43.58 3.62
387 392 2.367202 ATCGGGCCGACTGATGGTT 61.367 57.895 33.71 10.13 43.58 3.67
388 393 2.764128 ATCGGGCCGACTGATGGT 60.764 61.111 33.71 11.02 43.58 3.55
391 396 3.550431 CCCATCGGGCCGACTGAT 61.550 66.667 33.71 13.27 46.18 2.90
392 397 4.770362 TCCCATCGGGCCGACTGA 62.770 66.667 33.71 23.83 43.94 3.41
393 398 4.530857 GTCCCATCGGGCCGACTG 62.531 72.222 33.71 26.98 43.94 3.51
397 402 4.891727 CTTCGTCCCATCGGGCCG 62.892 72.222 22.51 22.51 43.94 6.13
398 403 3.467226 TCTTCGTCCCATCGGGCC 61.467 66.667 0.00 0.00 43.94 5.80
399 404 2.202892 GTCTTCGTCCCATCGGGC 60.203 66.667 0.00 0.00 43.94 6.13
400 405 1.141881 CTGTCTTCGTCCCATCGGG 59.858 63.158 0.00 0.00 46.11 5.14
401 406 1.519455 GCTGTCTTCGTCCCATCGG 60.519 63.158 0.00 0.00 0.00 4.18
402 407 1.874019 CGCTGTCTTCGTCCCATCG 60.874 63.158 0.00 0.00 0.00 3.84
403 408 1.215647 ACGCTGTCTTCGTCCCATC 59.784 57.895 0.00 0.00 34.84 3.51
404 409 3.377656 ACGCTGTCTTCGTCCCAT 58.622 55.556 0.00 0.00 34.84 4.00
420 425 4.101790 CACAATGGTGGCGCCGAC 62.102 66.667 23.90 20.10 41.45 4.79
428 433 0.250295 ACGTCAGGTCCACAATGGTG 60.250 55.000 0.00 0.00 44.85 4.17
429 434 0.034896 GACGTCAGGTCCACAATGGT 59.965 55.000 11.55 0.00 39.90 3.55
430 435 2.840974 GACGTCAGGTCCACAATGG 58.159 57.895 11.55 0.00 39.90 3.16
438 443 2.079020 TTGTCGGTGGACGTCAGGTC 62.079 60.000 18.91 0.00 46.49 3.85
439 444 1.469335 ATTGTCGGTGGACGTCAGGT 61.469 55.000 18.91 0.00 46.49 4.00
440 445 1.014044 CATTGTCGGTGGACGTCAGG 61.014 60.000 18.91 2.97 46.49 3.86
441 446 1.014044 CCATTGTCGGTGGACGTCAG 61.014 60.000 18.91 5.59 46.49 3.51
442 447 1.005512 CCATTGTCGGTGGACGTCA 60.006 57.895 18.91 0.27 46.49 4.35
443 448 1.290955 TCCATTGTCGGTGGACGTC 59.709 57.895 7.13 7.13 46.49 4.34
444 449 3.462169 TCCATTGTCGGTGGACGT 58.538 55.556 0.00 0.00 46.49 4.34
447 452 1.125093 ACCTGTCCATTGTCGGTGGA 61.125 55.000 0.00 0.00 43.26 4.02
448 453 0.673644 GACCTGTCCATTGTCGGTGG 60.674 60.000 0.00 0.00 38.11 4.61
449 454 0.034756 TGACCTGTCCATTGTCGGTG 59.965 55.000 0.00 0.00 0.00 4.94
450 455 0.984230 ATGACCTGTCCATTGTCGGT 59.016 50.000 0.00 0.00 0.00 4.69
451 456 1.656652 GATGACCTGTCCATTGTCGG 58.343 55.000 0.00 0.00 0.00 4.79
452 457 1.135112 TCGATGACCTGTCCATTGTCG 60.135 52.381 0.00 0.00 0.00 4.35
453 458 2.093973 AGTCGATGACCTGTCCATTGTC 60.094 50.000 0.00 0.00 32.18 3.18
454 459 1.902508 AGTCGATGACCTGTCCATTGT 59.097 47.619 0.00 0.00 32.18 2.71
455 460 2.544685 GAGTCGATGACCTGTCCATTG 58.455 52.381 0.00 0.00 32.18 2.82
456 461 1.482593 GGAGTCGATGACCTGTCCATT 59.517 52.381 0.00 0.00 32.18 3.16
457 462 1.115467 GGAGTCGATGACCTGTCCAT 58.885 55.000 0.00 0.00 32.18 3.41
458 463 0.039764 AGGAGTCGATGACCTGTCCA 59.960 55.000 7.11 0.00 30.07 4.02
459 464 1.135333 GAAGGAGTCGATGACCTGTCC 59.865 57.143 8.37 0.00 34.03 4.02
460 465 2.570442 GAAGGAGTCGATGACCTGTC 57.430 55.000 8.37 0.00 34.03 3.51
475 480 3.679980 CGTGGCATATTTATCCTCGAAGG 59.320 47.826 0.00 0.00 38.65 3.46
476 481 3.679980 CCGTGGCATATTTATCCTCGAAG 59.320 47.826 0.00 0.00 38.65 3.79
477 482 3.322541 TCCGTGGCATATTTATCCTCGAA 59.677 43.478 0.00 0.00 38.65 3.71
478 483 2.894765 TCCGTGGCATATTTATCCTCGA 59.105 45.455 0.00 0.00 38.65 4.04
479 484 3.313012 TCCGTGGCATATTTATCCTCG 57.687 47.619 0.00 0.00 36.83 4.63
480 485 4.003648 CCTTCCGTGGCATATTTATCCTC 58.996 47.826 0.00 0.00 0.00 3.71
481 486 4.021102 CCTTCCGTGGCATATTTATCCT 57.979 45.455 0.00 0.00 0.00 3.24
505 510 4.947147 TGGGACACAAGGCACCGC 62.947 66.667 0.00 0.00 0.00 5.68
517 522 0.108615 CGGATCGGCTCATATGGGAC 60.109 60.000 6.82 1.24 0.00 4.46
518 523 0.541998 ACGGATCGGCTCATATGGGA 60.542 55.000 6.82 0.00 0.00 4.37
519 524 0.108615 GACGGATCGGCTCATATGGG 60.109 60.000 2.13 0.00 0.00 4.00
520 525 0.891373 AGACGGATCGGCTCATATGG 59.109 55.000 2.13 0.00 44.38 2.74
521 526 2.600731 GAAGACGGATCGGCTCATATG 58.399 52.381 0.00 0.00 44.38 1.78
522 527 1.546476 GGAAGACGGATCGGCTCATAT 59.454 52.381 0.00 0.00 44.38 1.78
523 528 0.959553 GGAAGACGGATCGGCTCATA 59.040 55.000 0.00 0.00 44.38 2.15
524 529 1.043116 TGGAAGACGGATCGGCTCAT 61.043 55.000 0.00 0.00 44.38 2.90
525 530 1.680989 TGGAAGACGGATCGGCTCA 60.681 57.895 0.00 0.00 44.38 4.26
526 531 1.227002 GTGGAAGACGGATCGGCTC 60.227 63.158 0.00 0.00 44.38 4.70
528 533 0.462047 AATGTGGAAGACGGATCGGC 60.462 55.000 0.00 0.00 33.59 5.54
529 534 1.290203 CAATGTGGAAGACGGATCGG 58.710 55.000 0.00 0.00 0.00 4.18
530 535 0.652592 GCAATGTGGAAGACGGATCG 59.347 55.000 0.00 0.00 0.00 3.69
531 536 1.667724 CTGCAATGTGGAAGACGGATC 59.332 52.381 0.00 0.00 0.00 3.36
532 537 1.278985 TCTGCAATGTGGAAGACGGAT 59.721 47.619 0.00 0.00 0.00 4.18
533 538 0.684535 TCTGCAATGTGGAAGACGGA 59.315 50.000 0.00 0.00 0.00 4.69
534 539 0.798776 GTCTGCAATGTGGAAGACGG 59.201 55.000 0.00 0.00 0.00 4.79
535 540 1.511850 TGTCTGCAATGTGGAAGACG 58.488 50.000 0.00 0.00 0.00 4.18
536 541 2.618241 TGTTGTCTGCAATGTGGAAGAC 59.382 45.455 0.00 0.00 36.92 3.01
537 542 2.929641 TGTTGTCTGCAATGTGGAAGA 58.070 42.857 0.00 0.00 36.92 2.87
538 543 3.571571 CATGTTGTCTGCAATGTGGAAG 58.428 45.455 0.00 0.00 36.92 3.46
539 544 2.288334 GCATGTTGTCTGCAATGTGGAA 60.288 45.455 0.00 0.00 39.46 3.53
540 545 1.270274 GCATGTTGTCTGCAATGTGGA 59.730 47.619 0.00 0.00 39.46 4.02
541 546 1.670674 GGCATGTTGTCTGCAATGTGG 60.671 52.381 0.00 0.00 41.47 4.17
542 547 1.670674 GGGCATGTTGTCTGCAATGTG 60.671 52.381 0.00 0.00 41.47 3.21
543 548 0.604578 GGGCATGTTGTCTGCAATGT 59.395 50.000 0.00 0.00 41.47 2.71
544 549 0.892755 AGGGCATGTTGTCTGCAATG 59.107 50.000 0.00 0.00 41.47 2.82
545 550 2.291153 ACTAGGGCATGTTGTCTGCAAT 60.291 45.455 0.00 0.00 41.47 3.56
546 551 1.073763 ACTAGGGCATGTTGTCTGCAA 59.926 47.619 0.00 0.00 41.47 4.08
547 552 0.692476 ACTAGGGCATGTTGTCTGCA 59.308 50.000 0.00 0.00 41.47 4.41
548 553 1.339055 TGACTAGGGCATGTTGTCTGC 60.339 52.381 0.00 0.00 38.93 4.26
549 554 2.768253 TGACTAGGGCATGTTGTCTG 57.232 50.000 0.00 0.00 0.00 3.51
550 555 2.840038 TGATGACTAGGGCATGTTGTCT 59.160 45.455 5.24 0.00 0.00 3.41
551 556 3.266510 TGATGACTAGGGCATGTTGTC 57.733 47.619 5.24 0.00 0.00 3.18
552 557 3.200605 TGATGATGACTAGGGCATGTTGT 59.799 43.478 5.24 0.00 0.00 3.32
553 558 3.812262 TGATGATGACTAGGGCATGTTG 58.188 45.455 5.24 0.00 0.00 3.33
554 559 4.508551 TTGATGATGACTAGGGCATGTT 57.491 40.909 5.24 0.00 0.00 2.71
555 560 4.103627 TCATTGATGATGACTAGGGCATGT 59.896 41.667 5.24 0.00 39.83 3.21
556 561 4.648651 TCATTGATGATGACTAGGGCATG 58.351 43.478 5.24 0.00 39.83 4.06
557 562 4.987963 TCATTGATGATGACTAGGGCAT 57.012 40.909 0.00 0.00 39.83 4.40
558 563 4.776435 TTCATTGATGATGACTAGGGCA 57.224 40.909 0.00 0.00 44.28 5.36
559 564 6.444633 CATTTTCATTGATGATGACTAGGGC 58.555 40.000 0.00 0.00 44.28 5.19
560 565 6.444633 GCATTTTCATTGATGATGACTAGGG 58.555 40.000 11.73 0.00 44.28 3.53
561 566 6.264744 AGGCATTTTCATTGATGATGACTAGG 59.735 38.462 13.56 0.00 44.28 3.02
562 567 7.273320 AGGCATTTTCATTGATGATGACTAG 57.727 36.000 13.56 0.00 44.28 2.57
563 568 7.649533 AAGGCATTTTCATTGATGATGACTA 57.350 32.000 14.87 0.00 44.28 2.59
564 569 6.540438 AAGGCATTTTCATTGATGATGACT 57.460 33.333 10.70 10.70 44.28 3.41
565 570 7.977853 AGTAAAGGCATTTTCATTGATGATGAC 59.022 33.333 0.00 9.57 44.28 3.06
566 571 7.977293 CAGTAAAGGCATTTTCATTGATGATGA 59.023 33.333 0.00 0.00 42.95 2.92
567 572 7.254319 GCAGTAAAGGCATTTTCATTGATGATG 60.254 37.037 0.00 5.75 36.56 3.07
568 573 6.759827 GCAGTAAAGGCATTTTCATTGATGAT 59.240 34.615 0.00 0.00 36.56 2.45
569 574 6.071221 AGCAGTAAAGGCATTTTCATTGATGA 60.071 34.615 0.00 0.00 34.44 2.92
570 575 6.103997 AGCAGTAAAGGCATTTTCATTGATG 58.896 36.000 0.00 0.00 0.00 3.07
571 576 6.290294 AGCAGTAAAGGCATTTTCATTGAT 57.710 33.333 0.00 0.00 0.00 2.57
572 577 5.726980 AGCAGTAAAGGCATTTTCATTGA 57.273 34.783 0.00 0.00 0.00 2.57
573 578 5.697633 ACAAGCAGTAAAGGCATTTTCATTG 59.302 36.000 0.00 6.60 0.00 2.82
574 579 5.857268 ACAAGCAGTAAAGGCATTTTCATT 58.143 33.333 0.00 0.00 0.00 2.57
575 580 5.473066 ACAAGCAGTAAAGGCATTTTCAT 57.527 34.783 0.00 0.00 0.00 2.57
576 581 4.935352 ACAAGCAGTAAAGGCATTTTCA 57.065 36.364 0.00 0.00 0.00 2.69
577 582 7.889589 AATTACAAGCAGTAAAGGCATTTTC 57.110 32.000 0.00 0.00 45.25 2.29
578 583 8.558700 CAAAATTACAAGCAGTAAAGGCATTTT 58.441 29.630 0.00 0.00 45.25 1.82
579 584 7.714813 ACAAAATTACAAGCAGTAAAGGCATTT 59.285 29.630 0.53 0.53 45.25 2.32
580 585 7.216494 ACAAAATTACAAGCAGTAAAGGCATT 58.784 30.769 5.96 0.00 45.25 3.56
581 586 6.758254 ACAAAATTACAAGCAGTAAAGGCAT 58.242 32.000 5.96 0.00 45.25 4.40
582 587 6.155475 ACAAAATTACAAGCAGTAAAGGCA 57.845 33.333 5.96 0.00 45.25 4.75
583 588 5.633601 GGACAAAATTACAAGCAGTAAAGGC 59.366 40.000 5.96 0.00 45.25 4.35
584 589 6.640907 GTGGACAAAATTACAAGCAGTAAAGG 59.359 38.462 5.96 0.66 45.25 3.11
585 590 6.359617 CGTGGACAAAATTACAAGCAGTAAAG 59.640 38.462 5.96 1.24 45.25 1.85
586 591 6.038382 TCGTGGACAAAATTACAAGCAGTAAA 59.962 34.615 5.96 0.00 45.25 2.01
587 592 5.527951 TCGTGGACAAAATTACAAGCAGTAA 59.472 36.000 4.54 4.54 46.10 2.24
588 593 5.057819 TCGTGGACAAAATTACAAGCAGTA 58.942 37.500 0.00 0.00 0.00 2.74
589 594 3.880490 TCGTGGACAAAATTACAAGCAGT 59.120 39.130 0.00 0.00 0.00 4.40
590 595 4.024048 ACTCGTGGACAAAATTACAAGCAG 60.024 41.667 0.00 0.00 0.00 4.24
591 596 3.880490 ACTCGTGGACAAAATTACAAGCA 59.120 39.130 0.00 0.00 0.00 3.91
592 597 4.483476 ACTCGTGGACAAAATTACAAGC 57.517 40.909 0.00 0.00 0.00 4.01
593 598 7.041644 TCCTAAACTCGTGGACAAAATTACAAG 60.042 37.037 0.00 0.00 0.00 3.16
594 599 6.766944 TCCTAAACTCGTGGACAAAATTACAA 59.233 34.615 0.00 0.00 0.00 2.41
595 600 6.289834 TCCTAAACTCGTGGACAAAATTACA 58.710 36.000 0.00 0.00 0.00 2.41
596 601 6.620089 GCTCCTAAACTCGTGGACAAAATTAC 60.620 42.308 0.00 0.00 0.00 1.89
597 602 5.410439 GCTCCTAAACTCGTGGACAAAATTA 59.590 40.000 0.00 0.00 0.00 1.40
598 603 4.215613 GCTCCTAAACTCGTGGACAAAATT 59.784 41.667 0.00 0.00 0.00 1.82
599 604 3.751698 GCTCCTAAACTCGTGGACAAAAT 59.248 43.478 0.00 0.00 0.00 1.82
600 605 3.135994 GCTCCTAAACTCGTGGACAAAA 58.864 45.455 0.00 0.00 0.00 2.44
601 606 2.367567 AGCTCCTAAACTCGTGGACAAA 59.632 45.455 0.00 0.00 0.00 2.83
602 607 1.968493 AGCTCCTAAACTCGTGGACAA 59.032 47.619 0.00 0.00 0.00 3.18
603 608 1.544691 GAGCTCCTAAACTCGTGGACA 59.455 52.381 0.87 0.00 0.00 4.02
604 609 2.281140 GAGCTCCTAAACTCGTGGAC 57.719 55.000 0.87 0.00 0.00 4.02
610 615 4.421948 TCGAAATTCGAGCTCCTAAACTC 58.578 43.478 14.59 3.67 44.82 3.01
611 616 4.451629 TCGAAATTCGAGCTCCTAAACT 57.548 40.909 14.59 0.00 44.82 2.66
623 628 2.932614 AGATTGTGAGCCTCGAAATTCG 59.067 45.455 9.38 9.38 42.10 3.34
624 629 4.528531 GAGATTGTGAGCCTCGAAATTC 57.471 45.455 0.00 0.00 0.00 2.17
631 636 1.269517 CCTAGCGAGATTGTGAGCCTC 60.270 57.143 0.00 0.00 0.00 4.70
632 637 0.749649 CCTAGCGAGATTGTGAGCCT 59.250 55.000 0.00 0.00 0.00 4.58
633 638 0.878086 GCCTAGCGAGATTGTGAGCC 60.878 60.000 0.00 0.00 0.00 4.70
634 639 0.179100 TGCCTAGCGAGATTGTGAGC 60.179 55.000 0.00 0.00 0.00 4.26
635 640 2.133553 CATGCCTAGCGAGATTGTGAG 58.866 52.381 0.00 0.00 0.00 3.51
636 641 1.807755 GCATGCCTAGCGAGATTGTGA 60.808 52.381 6.36 0.00 0.00 3.58
637 642 0.585357 GCATGCCTAGCGAGATTGTG 59.415 55.000 6.36 0.00 0.00 3.33
638 643 0.178767 TGCATGCCTAGCGAGATTGT 59.821 50.000 16.68 0.00 33.85 2.71
639 644 0.585357 GTGCATGCCTAGCGAGATTG 59.415 55.000 16.68 0.00 33.85 2.67
640 645 0.467384 AGTGCATGCCTAGCGAGATT 59.533 50.000 16.68 0.00 33.85 2.40
641 646 0.467384 AAGTGCATGCCTAGCGAGAT 59.533 50.000 16.68 0.00 33.85 2.75
642 647 0.250234 AAAGTGCATGCCTAGCGAGA 59.750 50.000 16.68 0.00 33.85 4.04
643 648 1.089920 AAAAGTGCATGCCTAGCGAG 58.910 50.000 16.68 0.00 33.85 5.03
644 649 0.804364 CAAAAGTGCATGCCTAGCGA 59.196 50.000 16.68 0.00 33.85 4.93
645 650 3.317608 CAAAAGTGCATGCCTAGCG 57.682 52.632 16.68 0.00 33.85 4.26
656 661 0.593128 CCAACCTCCGAGCAAAAGTG 59.407 55.000 0.00 0.00 0.00 3.16
657 662 1.172812 GCCAACCTCCGAGCAAAAGT 61.173 55.000 0.00 0.00 0.00 2.66
658 663 0.890996 AGCCAACCTCCGAGCAAAAG 60.891 55.000 0.00 0.00 0.00 2.27
659 664 0.467290 AAGCCAACCTCCGAGCAAAA 60.467 50.000 0.00 0.00 0.00 2.44
660 665 1.150536 AAGCCAACCTCCGAGCAAA 59.849 52.632 0.00 0.00 0.00 3.68
661 666 1.600636 CAAGCCAACCTCCGAGCAA 60.601 57.895 0.00 0.00 0.00 3.91
662 667 2.032528 CAAGCCAACCTCCGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
663 668 3.435186 GCAAGCCAACCTCCGAGC 61.435 66.667 0.00 0.00 0.00 5.03
664 669 2.747855 GGCAAGCCAACCTCCGAG 60.748 66.667 6.14 0.00 35.81 4.63
665 670 4.344865 GGGCAAGCCAACCTCCGA 62.345 66.667 13.87 0.00 37.98 4.55
666 671 4.659172 TGGGCAAGCCAACCTCCG 62.659 66.667 13.87 0.00 37.98 4.63
667 672 2.203625 TTGGGCAAGCCAACCTCC 60.204 61.111 13.87 0.00 37.98 4.30
668 673 2.278330 CCTTGGGCAAGCCAACCTC 61.278 63.158 13.87 0.00 37.11 3.85
669 674 2.203684 CCTTGGGCAAGCCAACCT 60.204 61.111 13.87 0.00 37.11 3.50
670 675 2.203625 TCCTTGGGCAAGCCAACC 60.204 61.111 13.87 0.00 37.11 3.77
671 676 1.115326 AACTCCTTGGGCAAGCCAAC 61.115 55.000 13.87 0.00 37.11 3.77
672 677 1.114722 CAACTCCTTGGGCAAGCCAA 61.115 55.000 13.87 0.00 37.11 4.52
673 678 1.531365 CAACTCCTTGGGCAAGCCA 60.531 57.895 13.87 0.00 37.11 4.75
674 679 0.827507 TTCAACTCCTTGGGCAAGCC 60.828 55.000 1.52 1.52 37.11 4.35
675 680 0.315251 GTTCAACTCCTTGGGCAAGC 59.685 55.000 0.00 0.00 37.11 4.01
676 681 1.986882 AGTTCAACTCCTTGGGCAAG 58.013 50.000 0.00 0.00 38.14 4.01
677 682 2.306847 GAAGTTCAACTCCTTGGGCAA 58.693 47.619 0.00 0.00 0.00 4.52
678 683 1.478654 GGAAGTTCAACTCCTTGGGCA 60.479 52.381 5.01 0.00 0.00 5.36
679 684 1.202940 AGGAAGTTCAACTCCTTGGGC 60.203 52.381 5.01 0.00 0.00 5.36
680 685 2.959465 AGGAAGTTCAACTCCTTGGG 57.041 50.000 5.01 0.00 0.00 4.12
681 686 3.149981 GGAAGGAAGTTCAACTCCTTGG 58.850 50.000 19.95 0.00 36.53 3.61
682 687 3.817647 CAGGAAGGAAGTTCAACTCCTTG 59.182 47.826 19.95 8.20 36.53 3.61
683 688 3.459969 ACAGGAAGGAAGTTCAACTCCTT 59.540 43.478 16.71 16.71 37.96 3.36
684 689 3.049344 ACAGGAAGGAAGTTCAACTCCT 58.951 45.455 11.84 11.84 36.82 3.69
685 690 3.493767 ACAGGAAGGAAGTTCAACTCC 57.506 47.619 5.01 7.06 36.82 3.85
686 691 5.467063 CAGTTACAGGAAGGAAGTTCAACTC 59.533 44.000 5.01 0.00 36.82 3.01
687 692 5.104485 ACAGTTACAGGAAGGAAGTTCAACT 60.104 40.000 5.01 0.47 36.82 3.16
688 693 5.123936 ACAGTTACAGGAAGGAAGTTCAAC 58.876 41.667 5.01 0.00 36.82 3.18
689 694 5.367945 ACAGTTACAGGAAGGAAGTTCAA 57.632 39.130 5.01 0.00 36.82 2.69
690 695 5.367945 AACAGTTACAGGAAGGAAGTTCA 57.632 39.130 5.01 0.00 36.82 3.18
691 696 5.050295 CGAAACAGTTACAGGAAGGAAGTTC 60.050 44.000 0.00 0.00 0.00 3.01
692 697 4.814771 CGAAACAGTTACAGGAAGGAAGTT 59.185 41.667 0.00 0.00 0.00 2.66
693 698 4.100498 TCGAAACAGTTACAGGAAGGAAGT 59.900 41.667 0.00 0.00 0.00 3.01
694 699 4.448060 GTCGAAACAGTTACAGGAAGGAAG 59.552 45.833 0.00 0.00 0.00 3.46
695 700 4.141892 TGTCGAAACAGTTACAGGAAGGAA 60.142 41.667 0.00 0.00 0.00 3.36
696 701 3.385433 TGTCGAAACAGTTACAGGAAGGA 59.615 43.478 0.00 0.00 0.00 3.36
697 702 3.724374 TGTCGAAACAGTTACAGGAAGG 58.276 45.455 0.00 0.00 0.00 3.46
698 703 5.696724 AGATTGTCGAAACAGTTACAGGAAG 59.303 40.000 0.00 0.00 36.57 3.46
699 704 5.607477 AGATTGTCGAAACAGTTACAGGAA 58.393 37.500 0.00 0.00 36.57 3.36
700 705 5.209818 AGATTGTCGAAACAGTTACAGGA 57.790 39.130 0.00 0.00 36.57 3.86
701 706 7.416154 TTTAGATTGTCGAAACAGTTACAGG 57.584 36.000 0.00 0.00 36.57 4.00
706 711 8.021396 GGCTTTATTTAGATTGTCGAAACAGTT 58.979 33.333 0.00 0.00 36.57 3.16
707 712 7.361799 GGGCTTTATTTAGATTGTCGAAACAGT 60.362 37.037 0.00 0.00 36.57 3.55
708 713 6.967199 GGGCTTTATTTAGATTGTCGAAACAG 59.033 38.462 0.00 0.00 36.57 3.16
709 714 6.402766 CGGGCTTTATTTAGATTGTCGAAACA 60.403 38.462 0.00 0.00 0.00 2.83
710 715 5.963586 CGGGCTTTATTTAGATTGTCGAAAC 59.036 40.000 0.00 0.00 0.00 2.78
711 716 5.065474 CCGGGCTTTATTTAGATTGTCGAAA 59.935 40.000 0.00 0.00 0.00 3.46
712 717 4.573201 CCGGGCTTTATTTAGATTGTCGAA 59.427 41.667 0.00 0.00 0.00 3.71
713 718 4.124238 CCGGGCTTTATTTAGATTGTCGA 58.876 43.478 0.00 0.00 0.00 4.20
714 719 3.303791 GCCGGGCTTTATTTAGATTGTCG 60.304 47.826 12.87 0.00 0.00 4.35
715 720 3.303791 CGCCGGGCTTTATTTAGATTGTC 60.304 47.826 18.34 0.00 0.00 3.18
716 721 2.616842 CGCCGGGCTTTATTTAGATTGT 59.383 45.455 18.34 0.00 0.00 2.71
717 722 2.875933 TCGCCGGGCTTTATTTAGATTG 59.124 45.455 18.34 0.00 0.00 2.67
718 723 3.139077 CTCGCCGGGCTTTATTTAGATT 58.861 45.455 18.34 0.00 0.00 2.40
719 724 2.367567 TCTCGCCGGGCTTTATTTAGAT 59.632 45.455 18.34 0.00 0.00 1.98
720 725 1.758280 TCTCGCCGGGCTTTATTTAGA 59.242 47.619 18.34 3.09 0.00 2.10
721 726 2.234300 TCTCGCCGGGCTTTATTTAG 57.766 50.000 18.34 0.00 0.00 1.85
722 727 2.695127 TTCTCGCCGGGCTTTATTTA 57.305 45.000 18.34 0.00 0.00 1.40
723 728 1.676006 CATTCTCGCCGGGCTTTATTT 59.324 47.619 18.34 0.00 0.00 1.40
724 729 1.308998 CATTCTCGCCGGGCTTTATT 58.691 50.000 18.34 0.00 0.00 1.40
725 730 0.180406 ACATTCTCGCCGGGCTTTAT 59.820 50.000 18.34 2.30 0.00 1.40
726 731 0.461339 GACATTCTCGCCGGGCTTTA 60.461 55.000 18.34 1.26 0.00 1.85
727 732 1.745489 GACATTCTCGCCGGGCTTT 60.745 57.895 18.34 0.00 0.00 3.51
728 733 1.327690 TAGACATTCTCGCCGGGCTT 61.328 55.000 18.34 0.00 0.00 4.35
729 734 1.327690 TTAGACATTCTCGCCGGGCT 61.328 55.000 18.34 0.00 0.00 5.19
730 735 0.461339 TTTAGACATTCTCGCCGGGC 60.461 55.000 9.54 9.54 0.00 6.13
731 736 2.018542 TTTTAGACATTCTCGCCGGG 57.981 50.000 2.18 0.00 0.00 5.73
750 755 8.278729 TCAGAAAAACTGGCATTTTCATTTTT 57.721 26.923 21.80 12.66 45.06 1.94
751 756 7.862512 TCAGAAAAACTGGCATTTTCATTTT 57.137 28.000 21.80 6.82 45.06 1.82
752 757 7.862512 TTCAGAAAAACTGGCATTTTCATTT 57.137 28.000 21.80 7.12 45.06 2.32
753 758 7.862512 TTTCAGAAAAACTGGCATTTTCATT 57.137 28.000 21.80 7.71 45.06 2.57
754 759 7.862512 TTTTCAGAAAAACTGGCATTTTCAT 57.137 28.000 21.80 8.19 45.06 2.57
755 760 7.678947 TTTTTCAGAAAAACTGGCATTTTCA 57.321 28.000 21.80 5.91 45.06 2.69
824 829 9.968870 GGAGTGTAATCTACTCGATATTTTTCT 57.031 33.333 0.00 0.00 44.24 2.52
825 830 9.745880 TGGAGTGTAATCTACTCGATATTTTTC 57.254 33.333 0.00 0.00 44.24 2.29
827 832 9.751542 CTTGGAGTGTAATCTACTCGATATTTT 57.248 33.333 0.00 0.00 44.24 1.82
828 833 9.132923 TCTTGGAGTGTAATCTACTCGATATTT 57.867 33.333 0.00 0.00 44.24 1.40
829 834 8.693120 TCTTGGAGTGTAATCTACTCGATATT 57.307 34.615 0.00 0.00 44.24 1.28
830 835 8.871629 ATCTTGGAGTGTAATCTACTCGATAT 57.128 34.615 0.00 0.00 44.24 1.63
831 836 7.937394 TGATCTTGGAGTGTAATCTACTCGATA 59.063 37.037 0.00 0.00 44.24 2.92
832 837 6.773200 TGATCTTGGAGTGTAATCTACTCGAT 59.227 38.462 0.00 0.00 44.24 3.59
833 838 6.038382 GTGATCTTGGAGTGTAATCTACTCGA 59.962 42.308 0.00 0.00 44.24 4.04
834 839 6.202937 GTGATCTTGGAGTGTAATCTACTCG 58.797 44.000 0.00 0.00 44.24 4.18
835 840 6.202937 CGTGATCTTGGAGTGTAATCTACTC 58.797 44.000 0.00 0.00 42.94 2.59
836 841 5.450688 GCGTGATCTTGGAGTGTAATCTACT 60.451 44.000 0.00 0.00 0.00 2.57
837 842 4.740695 GCGTGATCTTGGAGTGTAATCTAC 59.259 45.833 0.00 0.00 0.00 2.59
838 843 4.645136 AGCGTGATCTTGGAGTGTAATCTA 59.355 41.667 0.00 0.00 0.00 1.98
839 844 3.449018 AGCGTGATCTTGGAGTGTAATCT 59.551 43.478 0.00 0.00 0.00 2.40
840 845 3.786635 AGCGTGATCTTGGAGTGTAATC 58.213 45.455 0.00 0.00 0.00 1.75
841 846 3.895232 AGCGTGATCTTGGAGTGTAAT 57.105 42.857 0.00 0.00 0.00 1.89
842 847 3.678056 AAGCGTGATCTTGGAGTGTAA 57.322 42.857 0.00 0.00 0.00 2.41
843 848 3.428999 GCTAAGCGTGATCTTGGAGTGTA 60.429 47.826 0.00 0.00 0.00 2.90
844 849 2.675317 GCTAAGCGTGATCTTGGAGTGT 60.675 50.000 0.00 0.00 0.00 3.55
845 850 1.929836 GCTAAGCGTGATCTTGGAGTG 59.070 52.381 0.00 0.00 0.00 3.51
846 851 1.827969 AGCTAAGCGTGATCTTGGAGT 59.172 47.619 0.00 0.00 0.00 3.85
847 852 2.593346 AGCTAAGCGTGATCTTGGAG 57.407 50.000 0.00 0.00 0.00 3.86
848 853 2.100916 GGTAGCTAAGCGTGATCTTGGA 59.899 50.000 0.00 0.00 0.00 3.53
849 854 2.159099 TGGTAGCTAAGCGTGATCTTGG 60.159 50.000 0.00 0.00 0.00 3.61
850 855 3.165058 TGGTAGCTAAGCGTGATCTTG 57.835 47.619 0.00 0.00 0.00 3.02
851 856 3.887621 TTGGTAGCTAAGCGTGATCTT 57.112 42.857 0.00 0.00 0.00 2.40
852 857 3.447586 TCTTTGGTAGCTAAGCGTGATCT 59.552 43.478 10.69 0.00 0.00 2.75
853 858 3.552294 GTCTTTGGTAGCTAAGCGTGATC 59.448 47.826 10.69 0.00 0.00 2.92
854 859 3.195825 AGTCTTTGGTAGCTAAGCGTGAT 59.804 43.478 10.69 0.00 0.00 3.06
855 860 2.561419 AGTCTTTGGTAGCTAAGCGTGA 59.439 45.455 10.69 0.00 0.00 4.35
856 861 2.960819 AGTCTTTGGTAGCTAAGCGTG 58.039 47.619 10.69 0.00 0.00 5.34
857 862 3.258622 AGAAGTCTTTGGTAGCTAAGCGT 59.741 43.478 10.69 5.33 0.00 5.07
858 863 3.851098 AGAAGTCTTTGGTAGCTAAGCG 58.149 45.455 10.69 0.00 0.00 4.68
859 864 7.677511 GCATAAAGAAGTCTTTGGTAGCTAAGC 60.678 40.741 15.09 6.79 45.01 3.09
860 865 7.334421 TGCATAAAGAAGTCTTTGGTAGCTAAG 59.666 37.037 15.09 9.46 45.01 2.18
861 866 7.165485 TGCATAAAGAAGTCTTTGGTAGCTAA 58.835 34.615 15.09 0.00 45.01 3.09
862 867 6.707290 TGCATAAAGAAGTCTTTGGTAGCTA 58.293 36.000 15.09 0.00 45.01 3.32
863 868 5.560724 TGCATAAAGAAGTCTTTGGTAGCT 58.439 37.500 15.09 0.00 45.01 3.32
864 869 5.643777 TCTGCATAAAGAAGTCTTTGGTAGC 59.356 40.000 15.09 12.90 45.01 3.58
865 870 6.876257 ACTCTGCATAAAGAAGTCTTTGGTAG 59.124 38.462 15.09 14.39 45.01 3.18
866 871 6.650807 CACTCTGCATAAAGAAGTCTTTGGTA 59.349 38.462 15.09 7.08 45.01 3.25
867 872 5.471456 CACTCTGCATAAAGAAGTCTTTGGT 59.529 40.000 15.09 2.90 45.01 3.67
868 873 5.471456 ACACTCTGCATAAAGAAGTCTTTGG 59.529 40.000 15.09 9.02 45.01 3.28
869 874 6.551385 ACACTCTGCATAAAGAAGTCTTTG 57.449 37.500 15.09 3.00 45.01 2.77
870 875 7.445945 ACTACACTCTGCATAAAGAAGTCTTT 58.554 34.615 10.92 10.92 46.78 2.52
871 876 6.998802 ACTACACTCTGCATAAAGAAGTCTT 58.001 36.000 0.00 0.00 37.91 3.01
872 877 6.209589 TGACTACACTCTGCATAAAGAAGTCT 59.790 38.462 13.89 0.00 32.75 3.24
873 878 6.309251 GTGACTACACTCTGCATAAAGAAGTC 59.691 42.308 8.57 8.57 42.99 3.01
874 879 6.159988 GTGACTACACTCTGCATAAAGAAGT 58.840 40.000 0.00 0.00 42.99 3.01
875 880 5.578727 GGTGACTACACTCTGCATAAAGAAG 59.421 44.000 0.00 0.00 45.32 2.85
876 881 5.479306 GGTGACTACACTCTGCATAAAGAA 58.521 41.667 0.00 0.00 45.32 2.52
877 882 4.380550 CGGTGACTACACTCTGCATAAAGA 60.381 45.833 0.00 0.00 45.32 2.52
878 883 3.859961 CGGTGACTACACTCTGCATAAAG 59.140 47.826 0.00 0.00 45.32 1.85
879 884 3.845178 CGGTGACTACACTCTGCATAAA 58.155 45.455 0.00 0.00 45.32 1.40
880 885 2.416836 GCGGTGACTACACTCTGCATAA 60.417 50.000 0.00 0.00 45.32 1.90
881 886 1.134367 GCGGTGACTACACTCTGCATA 59.866 52.381 0.00 0.00 45.32 3.14
882 887 0.108615 GCGGTGACTACACTCTGCAT 60.109 55.000 0.00 0.00 45.32 3.96
883 888 1.179174 AGCGGTGACTACACTCTGCA 61.179 55.000 0.00 0.00 45.32 4.41
884 889 0.734253 CAGCGGTGACTACACTCTGC 60.734 60.000 9.50 0.00 45.32 4.26
885 890 0.881796 TCAGCGGTGACTACACTCTG 59.118 55.000 14.39 0.00 45.32 3.35
886 891 3.341263 TCAGCGGTGACTACACTCT 57.659 52.632 14.39 0.00 45.32 3.24
914 919 0.678366 ATCGTCGGACAGAGCACTCT 60.678 55.000 9.10 0.00 41.37 3.24
915 920 1.015109 TATCGTCGGACAGAGCACTC 58.985 55.000 9.10 0.00 0.00 3.51
916 921 1.402259 CTTATCGTCGGACAGAGCACT 59.598 52.381 9.10 0.00 0.00 4.40
917 922 1.828832 CTTATCGTCGGACAGAGCAC 58.171 55.000 9.10 0.00 0.00 4.40
918 923 0.100682 GCTTATCGTCGGACAGAGCA 59.899 55.000 9.10 0.00 0.00 4.26
919 924 0.100682 TGCTTATCGTCGGACAGAGC 59.899 55.000 9.10 11.07 0.00 4.09
920 925 1.671328 TCTGCTTATCGTCGGACAGAG 59.329 52.381 9.10 1.38 31.01 3.35
921 926 1.671328 CTCTGCTTATCGTCGGACAGA 59.329 52.381 9.10 7.01 33.42 3.41
922 927 1.671328 TCTCTGCTTATCGTCGGACAG 59.329 52.381 9.10 0.00 0.00 3.51
923 928 1.746470 TCTCTGCTTATCGTCGGACA 58.254 50.000 9.10 0.00 0.00 4.02
924 929 4.654015 GATATCTCTGCTTATCGTCGGAC 58.346 47.826 0.00 0.00 0.00 4.79
925 930 3.371285 CGATATCTCTGCTTATCGTCGGA 59.629 47.826 0.34 0.00 41.26 4.55
926 931 3.675481 CGATATCTCTGCTTATCGTCGG 58.325 50.000 0.34 0.00 41.26 4.79
927 932 3.095016 GCGATATCTCTGCTTATCGTCG 58.905 50.000 12.29 0.00 45.54 5.12
928 933 3.430931 GGCGATATCTCTGCTTATCGTC 58.569 50.000 12.29 7.49 45.54 4.20
929 934 2.159503 CGGCGATATCTCTGCTTATCGT 60.160 50.000 0.00 0.00 45.54 3.73
930 935 2.445316 CGGCGATATCTCTGCTTATCG 58.555 52.381 0.00 7.72 46.17 2.92
931 936 2.159310 AGCGGCGATATCTCTGCTTATC 60.159 50.000 20.87 0.00 40.06 1.75
932 937 1.821753 AGCGGCGATATCTCTGCTTAT 59.178 47.619 20.87 2.44 40.06 1.73
933 938 1.200252 GAGCGGCGATATCTCTGCTTA 59.800 52.381 25.75 0.00 42.72 3.09
934 939 0.038709 GAGCGGCGATATCTCTGCTT 60.039 55.000 25.75 12.70 42.72 3.91
935 940 1.583986 GAGCGGCGATATCTCTGCT 59.416 57.895 25.39 25.39 45.06 4.24
936 941 1.445238 GGAGCGGCGATATCTCTGC 60.445 63.158 17.10 17.10 33.40 4.26
937 942 0.109365 CAGGAGCGGCGATATCTCTG 60.109 60.000 12.98 6.99 0.00 3.35
938 943 1.872197 GCAGGAGCGGCGATATCTCT 61.872 60.000 12.98 0.00 0.00 3.10
939 944 1.445238 GCAGGAGCGGCGATATCTC 60.445 63.158 12.98 7.47 0.00 2.75
940 945 2.653702 GCAGGAGCGGCGATATCT 59.346 61.111 12.98 2.18 0.00 1.98
1654 1671 2.597903 GGCCAGGAGGGGATTGAC 59.402 66.667 0.00 0.00 37.04 3.18
2328 2408 2.988800 GGCTTCAGCAGGCTCTCT 59.011 61.111 0.30 0.00 45.03 3.10
2392 2472 2.049156 CTCGCCACGAGCTCACAA 60.049 61.111 15.40 0.00 46.75 3.33
2403 2483 4.994471 CCACAGCACTGCTCGCCA 62.994 66.667 0.00 0.00 36.40 5.69
2428 2509 6.208007 TCTCGACAGGTTACACAATTTCTAGA 59.792 38.462 0.00 0.00 0.00 2.43
2429 2510 6.387465 TCTCGACAGGTTACACAATTTCTAG 58.613 40.000 0.00 0.00 0.00 2.43
2430 2511 6.335471 TCTCGACAGGTTACACAATTTCTA 57.665 37.500 0.00 0.00 0.00 2.10
2431 2512 5.209818 TCTCGACAGGTTACACAATTTCT 57.790 39.130 0.00 0.00 0.00 2.52
2438 2519 4.744570 TGAATGATCTCGACAGGTTACAC 58.255 43.478 0.00 0.00 0.00 2.90
2468 2549 9.618890 TTCCGAATCTCAAAGAGAAATCATTAT 57.381 29.630 0.29 0.00 42.27 1.28
2470 2551 7.928307 TTCCGAATCTCAAAGAGAAATCATT 57.072 32.000 0.29 0.00 42.27 2.57
2472 2553 6.372659 CCTTTCCGAATCTCAAAGAGAAATCA 59.627 38.462 0.29 0.00 42.27 2.57
2473 2554 6.595716 TCCTTTCCGAATCTCAAAGAGAAATC 59.404 38.462 0.29 2.65 42.27 2.17
2474 2555 6.372937 GTCCTTTCCGAATCTCAAAGAGAAAT 59.627 38.462 0.29 0.00 42.27 2.17
2475 2556 5.701290 GTCCTTTCCGAATCTCAAAGAGAAA 59.299 40.000 0.29 0.00 42.27 2.52
2476 2557 5.238583 GTCCTTTCCGAATCTCAAAGAGAA 58.761 41.667 0.29 0.00 42.27 2.87
2477 2558 4.618460 CGTCCTTTCCGAATCTCAAAGAGA 60.618 45.833 0.00 0.00 43.20 3.10
2478 2559 3.614616 CGTCCTTTCCGAATCTCAAAGAG 59.385 47.826 3.28 0.00 29.96 2.85
2479 2560 3.585862 CGTCCTTTCCGAATCTCAAAGA 58.414 45.455 3.28 0.00 29.96 2.52
2480 2561 2.094417 GCGTCCTTTCCGAATCTCAAAG 59.906 50.000 0.00 0.00 0.00 2.77
2481 2562 2.073816 GCGTCCTTTCCGAATCTCAAA 58.926 47.619 0.00 0.00 0.00 2.69
2482 2563 1.674817 GGCGTCCTTTCCGAATCTCAA 60.675 52.381 0.00 0.00 0.00 3.02
2483 2564 0.108329 GGCGTCCTTTCCGAATCTCA 60.108 55.000 0.00 0.00 0.00 3.27
2484 2565 2.679199 GGCGTCCTTTCCGAATCTC 58.321 57.895 0.00 0.00 0.00 2.75
2485 2566 4.934989 GGCGTCCTTTCCGAATCT 57.065 55.556 0.00 0.00 0.00 2.40
2491 2572 1.079336 AGTTAGCGGCGTCCTTTCC 60.079 57.895 9.37 0.00 0.00 3.13
2492 2573 1.967597 GCAGTTAGCGGCGTCCTTTC 61.968 60.000 9.37 0.00 0.00 2.62
2493 2574 2.033194 GCAGTTAGCGGCGTCCTTT 61.033 57.895 9.37 0.00 0.00 3.11
2514 2595 5.741982 GCGCATGTCATATATGTCATACGTA 59.258 40.000 29.42 0.00 41.65 3.57
2519 2600 3.273434 GGGCGCATGTCATATATGTCAT 58.727 45.455 16.66 16.66 37.09 3.06
2529 2610 2.977456 GTGTGTGGGCGCATGTCA 60.977 61.111 10.83 4.12 37.46 3.58
2592 2675 1.543802 GTGGGCAATTTCAATGTCCGA 59.456 47.619 0.00 0.00 45.71 4.55
2823 2909 9.646427 GACATGGCAACTATAATTAACCAAAAA 57.354 29.630 0.00 0.00 37.61 1.94
2911 2997 7.282224 GGCAACTACTGTTTTGACCATATATGA 59.718 37.037 14.54 0.00 33.52 2.15
2942 3028 3.940221 ACACGTGGCAACTAAGTAAACAA 59.060 39.130 21.57 0.00 37.61 2.83
3003 3089 4.469657 ACAACCAGATAAACACACATGGT 58.530 39.130 0.00 0.00 42.70 3.55
3025 3111 1.625759 CTGCAGTTGCGCATACGTGA 61.626 55.000 12.75 0.00 45.83 4.35
3101 3188 1.227438 ACGGCAACTGCAGTTACGT 60.227 52.632 35.90 35.90 46.84 3.57
3133 3220 0.240945 GGTACACACATGGCAACTGC 59.759 55.000 0.00 0.00 41.14 4.40
3164 3256 1.130613 GCAACTGCAGTTACGCGAG 59.869 57.895 30.67 18.35 41.59 5.03
3189 3281 2.094390 GCCACACGACACTCCTATGTTA 60.094 50.000 0.00 0.00 31.24 2.41
3292 3385 2.666862 CCCGCACCACGCTGTTTA 60.667 61.111 0.00 0.00 41.76 2.01
3311 3404 3.243602 GGCGTTGAAAAGTTTACCCACAT 60.244 43.478 0.00 0.00 0.00 3.21
3326 3419 3.171828 ATCGGTGTGTGGGCGTTGA 62.172 57.895 0.00 0.00 0.00 3.18
3342 3435 1.961394 TGTGCCACGTAGGATAGGATC 59.039 52.381 8.04 0.00 41.22 3.36
3344 3437 1.855295 TTGTGCCACGTAGGATAGGA 58.145 50.000 8.04 0.00 41.22 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.