Multiple sequence alignment - TraesCS7A01G104700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G104700 chr7A 100.000 5680 0 0 1 5680 63708701 63703022 0.000000e+00 10490.0
1 TraesCS7A01G104700 chr7A 91.892 148 10 2 2876 3023 428822173 428822318 7.460000e-49 206.0
2 TraesCS7A01G104700 chr7A 81.604 212 18 8 3508 3706 670282323 670282120 7.620000e-34 156.0
3 TraesCS7A01G104700 chr4A 92.295 1869 114 17 1035 2879 676531569 676533431 0.000000e+00 2627.0
4 TraesCS7A01G104700 chr4A 96.433 841 29 1 3910 4749 676533564 676534404 0.000000e+00 1386.0
5 TraesCS7A01G104700 chr4A 89.655 1015 67 22 7 992 676530328 676531333 0.000000e+00 1258.0
6 TraesCS7A01G104700 chr4A 84.183 765 72 25 4791 5515 676534406 676535161 0.000000e+00 697.0
7 TraesCS7A01G104700 chr4A 94.262 122 5 2 3032 3152 676533423 676533543 9.720000e-43 185.0
8 TraesCS7A01G104700 chr4A 92.857 126 8 1 3195 3320 450861491 450861367 1.260000e-41 182.0
9 TraesCS7A01G104700 chr7D 91.321 1855 83 23 3878 5680 59096579 59098407 0.000000e+00 2462.0
10 TraesCS7A01G104700 chr7D 89.942 1720 123 23 1119 2807 59094712 59096412 0.000000e+00 2172.0
11 TraesCS7A01G104700 chr7D 85.864 1047 89 35 39 1044 59093332 59094360 0.000000e+00 1059.0
12 TraesCS7A01G104700 chr7D 86.275 357 36 7 3532 3877 630369366 630369720 5.370000e-100 375.0
13 TraesCS7A01G104700 chr7D 95.082 122 5 1 3032 3152 59096451 59096572 2.090000e-44 191.0
14 TraesCS7A01G104700 chr7D 93.443 122 8 0 3195 3316 430121535 430121656 1.260000e-41 182.0
15 TraesCS7A01G104700 chr7D 93.023 43 2 1 12 53 59093278 59093320 1.710000e-05 62.1
16 TraesCS7A01G104700 chr2D 82.190 612 59 22 3312 3879 626279330 626279935 1.110000e-131 481.0
17 TraesCS7A01G104700 chr2D 82.723 382 47 8 3508 3882 473102388 473102757 7.100000e-84 322.0
18 TraesCS7A01G104700 chr2D 93.960 149 7 2 2875 3023 215831814 215831960 2.060000e-54 224.0
19 TraesCS7A01G104700 chr2D 94.118 119 7 0 3195 3313 22846082 22846200 1.260000e-41 182.0
20 TraesCS7A01G104700 chr2A 81.353 606 58 27 3320 3879 757027193 757026597 5.220000e-120 442.0
21 TraesCS7A01G104700 chr2A 84.856 383 48 6 3508 3882 614585597 614585977 1.490000e-100 377.0
22 TraesCS7A01G104700 chr2A 92.742 124 7 2 3195 3318 271907357 271907236 1.630000e-40 178.0
23 TraesCS7A01G104700 chr2A 81.746 126 16 4 3745 3864 416921897 416921773 1.300000e-16 99.0
24 TraesCS7A01G104700 chr3B 86.667 360 30 9 3538 3884 157234217 157233863 3.210000e-102 383.0
25 TraesCS7A01G104700 chr5D 79.436 603 74 20 3323 3877 45131934 45132534 1.150000e-101 381.0
26 TraesCS7A01G104700 chr5D 92.568 148 9 2 2876 3023 257502136 257502281 1.600000e-50 211.0
27 TraesCS7A01G104700 chr5D 92.562 121 9 0 3195 3315 169511034 169511154 2.100000e-39 174.0
28 TraesCS7A01G104700 chr3A 84.677 372 34 13 3526 3884 550436760 550437121 3.260000e-92 350.0
29 TraesCS7A01G104700 chr2B 82.199 382 49 8 3508 3882 552435350 552435719 1.540000e-80 311.0
30 TraesCS7A01G104700 chr2B 91.216 148 10 3 2876 3023 118068342 118068486 1.250000e-46 198.0
31 TraesCS7A01G104700 chr1D 79.894 378 60 7 3497 3872 2389112 2389475 4.360000e-66 263.0
32 TraesCS7A01G104700 chr1D 92.683 123 9 0 3195 3317 95795304 95795182 1.630000e-40 178.0
33 TraesCS7A01G104700 chr1A 79.167 384 63 7 3497 3872 1533090 1533464 3.400000e-62 250.0
34 TraesCS7A01G104700 chr1A 78.906 384 63 8 3497 3872 1594616 1594989 1.580000e-60 244.0
35 TraesCS7A01G104700 chr1A 92.763 152 10 1 2879 3029 133414486 133414335 9.580000e-53 219.0
36 TraesCS7A01G104700 chrUn 76.471 544 64 19 3320 3812 19233546 19233016 2.650000e-58 237.0
37 TraesCS7A01G104700 chr3D 93.919 148 7 2 2876 3023 26165847 26165702 7.410000e-54 222.0
38 TraesCS7A01G104700 chr5B 93.333 150 8 2 2874 3023 291786852 291786999 2.660000e-53 220.0
39 TraesCS7A01G104700 chr5B 75.877 456 61 29 3320 3736 478732282 478732727 2.700000e-43 187.0
40 TraesCS7A01G104700 chr6D 92.617 149 9 2 2875 3023 450831964 450832110 4.460000e-51 213.0
41 TraesCS7A01G104700 chr6D 93.023 129 7 2 3195 3321 376909410 376909282 2.700000e-43 187.0
42 TraesCS7A01G104700 chr6D 81.667 180 28 2 3321 3495 27323014 27323193 1.650000e-30 145.0
43 TraesCS7A01G104700 chr6B 92.568 148 11 0 2876 3023 127608759 127608612 4.460000e-51 213.0
44 TraesCS7A01G104700 chr7B 93.750 128 7 1 3195 3321 109185507 109185634 2.090000e-44 191.0
45 TraesCS7A01G104700 chr4D 94.309 123 7 0 3195 3317 44443058 44442936 7.510000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G104700 chr7A 63703022 63708701 5679 True 10490.00 10490 100.0000 1 5680 1 chr7A.!!$R1 5679
1 TraesCS7A01G104700 chr4A 676530328 676535161 4833 False 1230.60 2627 91.3656 7 5515 5 chr4A.!!$F1 5508
2 TraesCS7A01G104700 chr7D 59093278 59098407 5129 False 1189.22 2462 91.0464 12 5680 5 chr7D.!!$F3 5668
3 TraesCS7A01G104700 chr2D 626279330 626279935 605 False 481.00 481 82.1900 3312 3879 1 chr2D.!!$F4 567
4 TraesCS7A01G104700 chr2A 757026597 757027193 596 True 442.00 442 81.3530 3320 3879 1 chr2A.!!$R3 559
5 TraesCS7A01G104700 chr5D 45131934 45132534 600 False 381.00 381 79.4360 3323 3877 1 chr5D.!!$F1 554
6 TraesCS7A01G104700 chrUn 19233016 19233546 530 True 237.00 237 76.4710 3320 3812 1 chrUn.!!$R1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 203 0.036732 AGCAATTTCCCGTCAGCAGA 59.963 50.0 0.00 0.00 0.00 4.26 F
422 478 0.250513 CCTTCTTGGAGGACGGAAGG 59.749 60.0 6.25 6.25 45.49 3.46 F
2020 2619 0.032267 GGAGGTACATAGCCACTCGC 59.968 60.0 0.00 0.00 37.98 5.03 F
2910 3518 0.248949 GTAAGGCGTCCTAAGGCGAG 60.249 60.0 3.84 0.00 37.15 5.03 F
3016 3624 0.037232 AAGCGTCTAAGGCAGGACAC 60.037 55.0 0.00 0.00 33.19 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2600 0.032267 GCGAGTGGCTATGTACCTCC 59.968 60.0 0.0 0.0 39.11 4.30 R
2135 2743 2.751806 GTTGAATCAGGGAGCCTTCTTG 59.248 50.0 0.0 0.0 0.00 3.02 R
2997 3605 0.037232 GTGTCCTGCCTTAGACGCTT 60.037 55.0 0.0 0.0 39.77 4.68 R
4445 5121 0.826715 CCTCGATCCTTTCCTCTGCA 59.173 55.0 0.0 0.0 0.00 4.41 R
4780 5456 1.605058 ATCCTCAAGGGTGACGACGG 61.605 60.0 0.0 0.0 36.25 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.727910 AGTATACGATCTGAGTCGCATTATTTA 58.272 33.333 0.00 0.00 45.12 1.40
52 80 8.673711 TGAGTCGCATTATTTACTTAGCATTTT 58.326 29.630 0.00 0.00 0.00 1.82
65 93 1.958417 GCATTTTGCATTGCACTTGC 58.042 45.000 11.66 15.88 44.26 4.01
84 112 0.169672 CTGGCGGTGAAGCAGATTTG 59.830 55.000 0.00 0.00 39.27 2.32
135 171 3.308323 GCAGTAAGCAGTTCATAGCTCAC 59.692 47.826 0.00 0.00 44.79 3.51
136 172 4.498241 CAGTAAGCAGTTCATAGCTCACA 58.502 43.478 0.00 0.00 40.90 3.58
137 173 4.328440 CAGTAAGCAGTTCATAGCTCACAC 59.672 45.833 0.00 0.00 40.90 3.82
138 174 3.692257 AAGCAGTTCATAGCTCACACT 57.308 42.857 0.00 0.00 40.90 3.55
152 193 2.746362 CTCACACTCAGAGCAATTTCCC 59.254 50.000 0.00 0.00 0.00 3.97
161 203 0.036732 AGCAATTTCCCGTCAGCAGA 59.963 50.000 0.00 0.00 0.00 4.26
165 207 3.128589 GCAATTTCCCGTCAGCAGAATTA 59.871 43.478 0.00 0.00 0.00 1.40
186 228 0.671163 AAAACGCACGAATCCGCCTA 60.671 50.000 0.00 0.00 39.95 3.93
191 233 0.373716 GCACGAATCCGCCTAAGTTG 59.626 55.000 0.00 0.00 39.95 3.16
195 237 0.378610 GAATCCGCCTAAGTTGCAGC 59.621 55.000 0.00 0.00 0.00 5.25
196 238 0.322456 AATCCGCCTAAGTTGCAGCA 60.322 50.000 2.55 0.00 0.00 4.41
197 239 0.745845 ATCCGCCTAAGTTGCAGCAG 60.746 55.000 2.55 0.00 0.00 4.24
211 253 1.472376 GCAGCAGATTTACCTCGAGCT 60.472 52.381 6.99 0.00 33.58 4.09
213 255 3.738281 GCAGCAGATTTACCTCGAGCTTA 60.738 47.826 6.99 0.00 31.83 3.09
336 378 6.386654 CACCTAAAATCCCACACACATAAAC 58.613 40.000 0.00 0.00 0.00 2.01
337 379 6.208599 CACCTAAAATCCCACACACATAAACT 59.791 38.462 0.00 0.00 0.00 2.66
343 385 3.056821 TCCCACACACATAAACTCTCTCG 60.057 47.826 0.00 0.00 0.00 4.04
353 395 6.471841 CACATAAACTCTCTCGACTTCATCAG 59.528 42.308 0.00 0.00 0.00 2.90
356 398 0.735471 TCTCTCGACTTCATCAGCCG 59.265 55.000 0.00 0.00 0.00 5.52
368 410 0.835941 ATCAGCCGGCTCAGAATTCT 59.164 50.000 30.29 3.62 0.00 2.40
372 414 1.977293 GCCGGCTCAGAATTCTCCCT 61.977 60.000 22.15 0.00 0.00 4.20
394 450 3.703556 TCCTAACCAGATGAGCAGAAGAG 59.296 47.826 0.00 0.00 0.00 2.85
395 451 3.450457 CCTAACCAGATGAGCAGAAGAGT 59.550 47.826 0.00 0.00 0.00 3.24
415 471 2.897969 GTCACAGTACCTTCTTGGAGGA 59.102 50.000 1.27 0.00 39.25 3.71
419 475 1.076677 AGTACCTTCTTGGAGGACGGA 59.923 52.381 1.27 0.00 39.25 4.69
422 478 0.250513 CCTTCTTGGAGGACGGAAGG 59.749 60.000 6.25 6.25 45.49 3.46
425 481 2.203938 TTGGAGGACGGAAGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
642 726 2.430332 CTCGCCATCTCTTCTTCCTCTT 59.570 50.000 0.00 0.00 0.00 2.85
661 745 3.699894 AGCTCGGTCAGTGGCTGG 61.700 66.667 3.17 0.00 33.50 4.85
663 747 3.699894 CTCGGTCAGTGGCTGGCT 61.700 66.667 3.17 0.00 36.22 4.75
664 748 3.947132 CTCGGTCAGTGGCTGGCTG 62.947 68.421 3.17 3.37 43.13 4.85
668 752 3.563224 TCAGTGGCTGGCTGCAGT 61.563 61.111 16.64 4.74 45.15 4.40
817 901 2.504244 GTTCGACGGAGGAGCACG 60.504 66.667 0.00 0.00 0.00 5.34
886 973 0.252103 AAGGAGAACCGAGGTAGCCA 60.252 55.000 0.00 0.00 41.83 4.75
910 997 1.436336 GGTCCGGTCGATGGTGTAG 59.564 63.158 0.00 0.00 0.00 2.74
959 1054 4.851639 AAACATCTACTCCTCCTGCATT 57.148 40.909 0.00 0.00 0.00 3.56
964 1059 4.744795 TCTACTCCTCCTGCATTTTCTC 57.255 45.455 0.00 0.00 0.00 2.87
1076 1364 4.436998 CCTGGTCGCCGTCACCTC 62.437 72.222 0.00 0.00 34.66 3.85
1098 1386 3.522731 CTCACCCGCCTCCTCTCG 61.523 72.222 0.00 0.00 0.00 4.04
1284 1849 3.376078 GGGACGCAGGTACGGACA 61.376 66.667 0.00 0.00 37.37 4.02
1295 1868 0.606604 GTACGGACACTCCACACCAT 59.393 55.000 0.00 0.00 35.91 3.55
1307 1880 1.762957 CCACACCATACGGATCTCCTT 59.237 52.381 0.00 0.00 35.59 3.36
1312 1885 2.434702 ACCATACGGATCTCCTTCCAAC 59.565 50.000 0.00 0.00 35.34 3.77
1340 1934 0.610174 TGCTGCTGCTGCTTACTACT 59.390 50.000 27.67 0.00 40.48 2.57
1342 1936 1.933247 CTGCTGCTGCTTACTACTCC 58.067 55.000 17.00 0.00 40.48 3.85
1343 1937 1.480137 CTGCTGCTGCTTACTACTCCT 59.520 52.381 17.00 0.00 40.48 3.69
1344 1938 2.690497 CTGCTGCTGCTTACTACTCCTA 59.310 50.000 17.00 0.00 40.48 2.94
1345 1939 2.427453 TGCTGCTGCTTACTACTCCTAC 59.573 50.000 17.00 0.00 40.48 3.18
1346 1940 2.427453 GCTGCTGCTTACTACTCCTACA 59.573 50.000 8.53 0.00 36.03 2.74
1347 1941 3.735514 GCTGCTGCTTACTACTCCTACAC 60.736 52.174 8.53 0.00 36.03 2.90
1348 1942 2.758979 TGCTGCTTACTACTCCTACACC 59.241 50.000 0.00 0.00 0.00 4.16
1349 1943 3.025262 GCTGCTTACTACTCCTACACCT 58.975 50.000 0.00 0.00 0.00 4.00
1350 1944 3.067040 GCTGCTTACTACTCCTACACCTC 59.933 52.174 0.00 0.00 0.00 3.85
1352 1946 2.617774 GCTTACTACTCCTACACCTCCG 59.382 54.545 0.00 0.00 0.00 4.63
1353 1947 2.338577 TACTACTCCTACACCTCCGC 57.661 55.000 0.00 0.00 0.00 5.54
1354 1948 0.747283 ACTACTCCTACACCTCCGCG 60.747 60.000 0.00 0.00 0.00 6.46
1355 1949 0.747283 CTACTCCTACACCTCCGCGT 60.747 60.000 4.92 0.00 0.00 6.01
1358 1952 0.463295 CTCCTACACCTCCGCGTCTA 60.463 60.000 4.92 0.00 0.00 2.59
1368 1962 0.892755 TCCGCGTCTACTCCATTGTT 59.107 50.000 4.92 0.00 0.00 2.83
1378 1972 4.894114 TCTACTCCATTGTTACTCCTAGCC 59.106 45.833 0.00 0.00 0.00 3.93
1388 1982 1.192146 ACTCCTAGCCGCAAACCTGA 61.192 55.000 0.00 0.00 0.00 3.86
1393 1987 2.180159 TAGCCGCAAACCTGACCTCC 62.180 60.000 0.00 0.00 0.00 4.30
1423 2017 0.737219 GCCATGAATGTCTCACTGCC 59.263 55.000 0.00 0.00 36.69 4.85
1439 2033 4.050553 CACTGCCACAACATTTAAACCAG 58.949 43.478 0.00 0.00 0.00 4.00
1475 2073 4.320788 CCAGTCAGGTCTCATTTTTCTTGC 60.321 45.833 0.00 0.00 0.00 4.01
1522 2120 2.093921 GCTTCTCCTGAGGTCAAGGTAC 60.094 54.545 12.14 0.00 0.00 3.34
1591 2189 2.233355 GTCAAATGTGTTCGCATGACG 58.767 47.619 0.00 0.00 45.62 4.35
1594 2192 1.305219 AATGTGTTCGCATGACGGGG 61.305 55.000 0.00 0.00 43.89 5.73
1678 2276 4.747108 AGAACTTGTTGATCACTTCACTCG 59.253 41.667 0.00 0.00 32.84 4.18
1716 2315 4.058817 ACTAACCGCAAGTTCTCTTCTTG 58.941 43.478 0.00 0.00 43.31 3.02
1719 2318 2.103263 ACCGCAAGTTCTCTTCTTGACT 59.897 45.455 9.40 0.00 43.17 3.41
1754 2353 1.455849 CCTGCAGGTTCTGGGTCAA 59.544 57.895 25.53 0.00 31.21 3.18
1813 2412 3.955524 TTTTGTCTTCCCAAGGTACCA 57.044 42.857 15.94 0.00 0.00 3.25
1820 2419 1.145571 TCCCAAGGTACCACTTGCTT 58.854 50.000 15.94 0.00 44.98 3.91
1826 2425 4.222145 CCAAGGTACCACTTGCTTCTACTA 59.778 45.833 15.94 0.00 44.98 1.82
1838 2437 3.206964 GCTTCTACTATTTGAGCACCCC 58.793 50.000 0.00 0.00 0.00 4.95
1855 2454 2.827921 ACCCCAAATCAAATCAGACAGC 59.172 45.455 0.00 0.00 0.00 4.40
1876 2475 1.340889 TGGTCAGCATTGTCTTTTGGC 59.659 47.619 0.00 0.00 0.00 4.52
1938 2537 4.069304 TGTTTTGTGGAGTATGTAGTGGC 58.931 43.478 0.00 0.00 0.00 5.01
1950 2549 2.060383 TAGTGGCGCTGGAGCTCAT 61.060 57.895 17.19 0.00 39.32 2.90
1977 2576 0.668535 GCTCGTGGGCAACTTTTCTT 59.331 50.000 0.00 0.00 0.00 2.52
2001 2600 1.067985 CGATCCATCATCCTCACTCCG 60.068 57.143 0.00 0.00 0.00 4.63
2020 2619 0.032267 GGAGGTACATAGCCACTCGC 59.968 60.000 0.00 0.00 37.98 5.03
2043 2644 4.497006 CGCTGCTCTTCATATTTTCCCTTG 60.497 45.833 0.00 0.00 0.00 3.61
2103 2704 5.104259 AGTATTAGAAACTGCTTCCAGGG 57.896 43.478 0.00 0.00 43.53 4.45
2212 2820 9.903682 GTGTATATACGTGTGATACAATTAGGT 57.096 33.333 16.06 0.00 37.69 3.08
2246 2854 2.019249 TGTTCTTGCTATGCCATCTGC 58.981 47.619 0.00 0.00 41.77 4.26
2265 2873 4.855715 TGCTGTACACCTAGCATATCTC 57.144 45.455 3.57 0.00 44.36 2.75
2275 2883 5.182950 CACCTAGCATATCTCGATCTGTCTT 59.817 44.000 0.00 0.00 0.00 3.01
2276 2884 5.182950 ACCTAGCATATCTCGATCTGTCTTG 59.817 44.000 0.00 0.00 0.00 3.02
2313 2921 5.187576 ACATCAATGTTTACCCAAATCCCAG 59.812 40.000 0.00 0.00 37.90 4.45
2332 2940 3.243839 CCAGCATAAAAACTGGCAGTTGT 60.244 43.478 31.75 24.86 46.50 3.32
2345 2953 1.959042 CAGTTGTGTCTGCTGGTCTT 58.041 50.000 0.00 0.00 0.00 3.01
2346 2954 2.292267 CAGTTGTGTCTGCTGGTCTTT 58.708 47.619 0.00 0.00 0.00 2.52
2443 3051 7.154656 TGCTGCAGTATTGTCTTCGATATAAT 58.845 34.615 16.64 0.00 0.00 1.28
2623 3231 2.819608 CTGTCCAACCAATTCCGTTGAT 59.180 45.455 13.97 0.00 42.63 2.57
2693 3301 1.743394 GGCCGTCTTAAATTGGTGGAG 59.257 52.381 0.00 0.00 0.00 3.86
2889 3497 9.678941 GGTATATAGAAGCATTGTTTTTAAGGC 57.321 33.333 0.00 0.00 37.60 4.35
2890 3498 9.382244 GTATATAGAAGCATTGTTTTTAAGGCG 57.618 33.333 0.00 0.00 41.77 5.52
2891 3499 3.913089 AGAAGCATTGTTTTTAAGGCGG 58.087 40.909 0.00 0.00 41.77 6.13
2892 3500 3.320826 AGAAGCATTGTTTTTAAGGCGGT 59.679 39.130 0.00 0.00 41.77 5.68
2893 3501 4.521256 AGAAGCATTGTTTTTAAGGCGGTA 59.479 37.500 0.00 0.00 41.77 4.02
2894 3502 4.857509 AGCATTGTTTTTAAGGCGGTAA 57.142 36.364 0.00 0.00 41.77 2.85
2895 3503 4.805219 AGCATTGTTTTTAAGGCGGTAAG 58.195 39.130 0.00 0.00 41.77 2.34
2896 3504 3.924073 GCATTGTTTTTAAGGCGGTAAGG 59.076 43.478 0.00 0.00 0.00 2.69
2897 3505 7.795887 AGCATTGTTTTTAAGGCGGTAAGGC 62.796 44.000 0.00 0.00 41.77 4.35
2904 3512 2.894919 GGCGGTAAGGCGTCCTAA 59.105 61.111 0.00 0.00 31.13 2.69
2905 3513 1.227176 GGCGGTAAGGCGTCCTAAG 60.227 63.158 0.00 0.00 31.13 2.18
2906 3514 1.227176 GCGGTAAGGCGTCCTAAGG 60.227 63.158 0.00 0.00 31.13 2.69
2907 3515 1.227176 CGGTAAGGCGTCCTAAGGC 60.227 63.158 0.00 0.00 31.13 4.35
2908 3516 1.227176 GGTAAGGCGTCCTAAGGCG 60.227 63.158 0.00 0.00 37.15 5.52
2909 3517 1.669999 GGTAAGGCGTCCTAAGGCGA 61.670 60.000 3.84 0.00 37.15 5.54
2910 3518 0.248949 GTAAGGCGTCCTAAGGCGAG 60.249 60.000 3.84 0.00 37.15 5.03
2911 3519 2.012902 TAAGGCGTCCTAAGGCGAGC 62.013 60.000 3.84 0.00 37.15 5.03
2912 3520 4.143333 GGCGTCCTAAGGCGAGCA 62.143 66.667 3.84 0.00 37.15 4.26
2913 3521 2.886124 GCGTCCTAAGGCGAGCAC 60.886 66.667 3.84 0.00 0.00 4.40
2914 3522 2.202756 CGTCCTAAGGCGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
2915 3523 2.978824 GTCCTAAGGCGAGCACCA 59.021 61.111 0.00 0.00 0.00 4.17
2916 3524 1.448013 GTCCTAAGGCGAGCACCAC 60.448 63.158 0.00 0.00 0.00 4.16
2917 3525 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
2918 3526 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
2919 3527 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
2924 3532 4.077184 CGAGCACCACCCGCCTTA 62.077 66.667 0.00 0.00 0.00 2.69
2925 3533 2.125106 GAGCACCACCCGCCTTAG 60.125 66.667 0.00 0.00 0.00 2.18
2926 3534 4.410400 AGCACCACCCGCCTTAGC 62.410 66.667 0.00 0.00 0.00 3.09
2967 3575 2.422276 GCTTAAGGCGGGCATATTTG 57.578 50.000 4.29 0.00 0.00 2.32
2968 3576 1.681264 GCTTAAGGCGGGCATATTTGT 59.319 47.619 4.29 0.00 0.00 2.83
2969 3577 2.882137 GCTTAAGGCGGGCATATTTGTA 59.118 45.455 4.29 0.00 0.00 2.41
2970 3578 3.316868 GCTTAAGGCGGGCATATTTGTAA 59.683 43.478 4.29 0.00 0.00 2.41
2971 3579 4.556699 GCTTAAGGCGGGCATATTTGTAAG 60.557 45.833 4.29 1.61 0.00 2.34
2972 3580 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
2973 3581 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
2974 3582 1.028905 GCGGGCATATTTGTAAGGCA 58.971 50.000 0.00 0.00 0.00 4.75
2975 3583 1.269051 GCGGGCATATTTGTAAGGCAC 60.269 52.381 0.00 0.00 0.00 5.01
2977 3585 2.033299 CGGGCATATTTGTAAGGCACTG 59.967 50.000 0.00 0.00 40.86 3.66
2978 3586 2.223805 GGGCATATTTGTAAGGCACTGC 60.224 50.000 0.00 0.00 40.86 4.40
2990 3598 4.408821 CACTGCCAGGGCGCCTTA 62.409 66.667 28.56 2.14 45.51 2.69
2991 3599 3.411517 ACTGCCAGGGCGCCTTAT 61.412 61.111 28.56 10.23 45.51 1.73
2992 3600 2.592861 CTGCCAGGGCGCCTTATC 60.593 66.667 28.56 14.20 45.51 1.75
2993 3601 4.545706 TGCCAGGGCGCCTTATCG 62.546 66.667 28.56 10.79 45.51 2.92
3012 3620 3.669354 CCTAAGCGTCTAAGGCAGG 57.331 57.895 0.00 0.00 0.00 4.85
3013 3621 1.112113 CCTAAGCGTCTAAGGCAGGA 58.888 55.000 0.00 0.00 27.35 3.86
3014 3622 1.202428 CCTAAGCGTCTAAGGCAGGAC 60.202 57.143 0.00 0.00 27.35 3.85
3015 3623 1.476891 CTAAGCGTCTAAGGCAGGACA 59.523 52.381 0.00 0.00 33.19 4.02
3016 3624 0.037232 AAGCGTCTAAGGCAGGACAC 60.037 55.000 0.00 0.00 33.19 3.67
3017 3625 1.448013 GCGTCTAAGGCAGGACACC 60.448 63.158 0.00 0.00 33.19 4.16
3018 3626 1.889530 GCGTCTAAGGCAGGACACCT 61.890 60.000 0.00 0.00 40.02 4.00
3020 3628 1.822990 CGTCTAAGGCAGGACACCTTA 59.177 52.381 2.51 2.51 45.80 2.69
3021 3629 2.232941 CGTCTAAGGCAGGACACCTTAA 59.767 50.000 4.01 0.00 46.50 1.85
3022 3630 3.306502 CGTCTAAGGCAGGACACCTTAAA 60.307 47.826 4.01 0.00 46.50 1.52
3023 3631 4.623171 CGTCTAAGGCAGGACACCTTAAAT 60.623 45.833 4.01 0.00 46.50 1.40
3024 3632 5.394883 CGTCTAAGGCAGGACACCTTAAATA 60.395 44.000 4.01 0.00 46.50 1.40
3025 3633 6.412214 GTCTAAGGCAGGACACCTTAAATAA 58.588 40.000 4.01 0.00 46.50 1.40
3026 3634 7.054751 GTCTAAGGCAGGACACCTTAAATAAT 58.945 38.462 4.01 0.00 46.50 1.28
3027 3635 8.208903 GTCTAAGGCAGGACACCTTAAATAATA 58.791 37.037 4.01 0.00 46.50 0.98
3028 3636 8.429641 TCTAAGGCAGGACACCTTAAATAATAG 58.570 37.037 4.01 0.00 46.50 1.73
3029 3637 6.824958 AGGCAGGACACCTTAAATAATAGA 57.175 37.500 0.00 0.00 31.87 1.98
3030 3638 6.831976 AGGCAGGACACCTTAAATAATAGAG 58.168 40.000 0.00 0.00 31.87 2.43
3031 3639 6.387220 AGGCAGGACACCTTAAATAATAGAGT 59.613 38.462 0.00 0.00 31.87 3.24
3032 3640 7.567622 AGGCAGGACACCTTAAATAATAGAGTA 59.432 37.037 0.00 0.00 31.87 2.59
3033 3641 7.873505 GGCAGGACACCTTAAATAATAGAGTAG 59.126 40.741 0.00 0.00 0.00 2.57
3034 3642 8.639761 GCAGGACACCTTAAATAATAGAGTAGA 58.360 37.037 0.00 0.00 0.00 2.59
3132 3740 4.042934 ACAAGTTGGTATTCTAGGGTGCTT 59.957 41.667 7.96 0.00 0.00 3.91
3152 3760 7.041984 GGTGCTTGCCAGAGTATTTACTTATAC 60.042 40.741 0.00 0.00 36.50 1.47
3153 3761 7.711339 GTGCTTGCCAGAGTATTTACTTATACT 59.289 37.037 0.00 0.00 42.53 2.12
3154 3762 8.920174 TGCTTGCCAGAGTATTTACTTATACTA 58.080 33.333 0.00 0.00 40.51 1.82
3155 3763 9.413048 GCTTGCCAGAGTATTTACTTATACTAG 57.587 37.037 0.00 0.00 40.51 2.57
3156 3764 9.413048 CTTGCCAGAGTATTTACTTATACTAGC 57.587 37.037 0.00 0.00 40.51 3.42
3158 3766 8.358148 TGCCAGAGTATTTACTTATACTAGCAC 58.642 37.037 0.00 0.00 40.51 4.40
3159 3767 8.358148 GCCAGAGTATTTACTTATACTAGCACA 58.642 37.037 0.00 0.00 40.51 4.57
3177 3785 2.860293 ATGCACGTGCGTTGCTAC 59.140 55.556 33.22 7.31 45.83 3.58
3195 3803 8.196048 GTTGCTACGAAATAATAAAATACGCC 57.804 34.615 0.00 0.00 0.00 5.68
3196 3804 7.479897 TGCTACGAAATAATAAAATACGCCA 57.520 32.000 0.00 0.00 0.00 5.69
3197 3805 7.569297 TGCTACGAAATAATAAAATACGCCAG 58.431 34.615 0.00 0.00 0.00 4.85
3198 3806 7.438757 TGCTACGAAATAATAAAATACGCCAGA 59.561 33.333 0.00 0.00 0.00 3.86
3199 3807 7.739043 GCTACGAAATAATAAAATACGCCAGAC 59.261 37.037 0.00 0.00 0.00 3.51
3200 3808 7.781548 ACGAAATAATAAAATACGCCAGACT 57.218 32.000 0.00 0.00 0.00 3.24
3201 3809 8.205131 ACGAAATAATAAAATACGCCAGACTT 57.795 30.769 0.00 0.00 0.00 3.01
3202 3810 8.120465 ACGAAATAATAAAATACGCCAGACTTG 58.880 33.333 0.00 0.00 0.00 3.16
3204 3812 6.877611 ATAATAAAATACGCCAGACTTGGG 57.122 37.500 0.00 0.00 45.16 4.12
3205 3813 2.871096 AAAATACGCCAGACTTGGGA 57.129 45.000 0.00 0.00 45.16 4.37
3206 3814 2.109425 AAATACGCCAGACTTGGGAC 57.891 50.000 0.00 0.00 45.16 4.46
3207 3815 0.108329 AATACGCCAGACTTGGGACG 60.108 55.000 0.00 0.00 45.16 4.79
3208 3816 1.255667 ATACGCCAGACTTGGGACGT 61.256 55.000 0.00 0.00 45.16 4.34
3209 3817 1.870055 TACGCCAGACTTGGGACGTC 61.870 60.000 7.13 7.13 45.16 4.34
3210 3818 2.047179 GCCAGACTTGGGACGTCC 60.047 66.667 27.04 27.04 45.16 4.79
3211 3819 2.879233 GCCAGACTTGGGACGTCCA 61.879 63.158 34.40 18.59 45.16 4.02
3221 3829 2.253610 TGGGACGTCCACTAATTCAGT 58.746 47.619 34.40 0.00 41.46 3.41
3222 3830 2.232941 TGGGACGTCCACTAATTCAGTC 59.767 50.000 34.40 13.83 41.46 3.51
3223 3831 2.496470 GGGACGTCCACTAATTCAGTCT 59.504 50.000 34.40 0.00 34.26 3.24
3224 3832 3.429135 GGGACGTCCACTAATTCAGTCTC 60.429 52.174 34.40 9.33 34.26 3.36
3225 3833 3.444388 GGACGTCCACTAATTCAGTCTCT 59.556 47.826 29.75 0.00 34.26 3.10
3226 3834 4.416620 GACGTCCACTAATTCAGTCTCTG 58.583 47.826 3.51 0.00 34.26 3.35
3227 3835 3.827302 ACGTCCACTAATTCAGTCTCTGT 59.173 43.478 0.00 0.00 34.26 3.41
3228 3836 4.281182 ACGTCCACTAATTCAGTCTCTGTT 59.719 41.667 0.00 0.00 34.26 3.16
3229 3837 5.475909 ACGTCCACTAATTCAGTCTCTGTTA 59.524 40.000 0.00 0.00 34.26 2.41
3230 3838 6.015688 ACGTCCACTAATTCAGTCTCTGTTAA 60.016 38.462 0.00 0.00 34.26 2.01
3231 3839 6.308282 CGTCCACTAATTCAGTCTCTGTTAAC 59.692 42.308 0.00 0.00 34.26 2.01
3232 3840 7.152645 GTCCACTAATTCAGTCTCTGTTAACA 58.847 38.462 8.28 8.28 34.26 2.41
3233 3841 7.329717 GTCCACTAATTCAGTCTCTGTTAACAG 59.670 40.741 26.60 26.60 39.39 3.16
3234 3842 6.091441 CCACTAATTCAGTCTCTGTTAACAGC 59.909 42.308 27.49 15.52 38.51 4.40
3235 3843 6.091441 CACTAATTCAGTCTCTGTTAACAGCC 59.909 42.308 27.49 17.91 38.51 4.85
3236 3844 4.899352 ATTCAGTCTCTGTTAACAGCCT 57.101 40.909 27.49 19.56 43.46 4.58
3237 3845 3.944055 TCAGTCTCTGTTAACAGCCTC 57.056 47.619 27.49 18.88 43.46 4.70
3238 3846 2.563179 TCAGTCTCTGTTAACAGCCTCC 59.437 50.000 27.49 15.76 43.46 4.30
3239 3847 2.564947 CAGTCTCTGTTAACAGCCTCCT 59.435 50.000 27.49 17.44 43.46 3.69
3240 3848 3.764434 CAGTCTCTGTTAACAGCCTCCTA 59.236 47.826 27.49 10.88 43.46 2.94
3241 3849 4.020543 AGTCTCTGTTAACAGCCTCCTAG 58.979 47.826 27.49 18.90 43.46 3.02
3242 3850 3.131400 GTCTCTGTTAACAGCCTCCTAGG 59.869 52.174 27.49 0.82 43.46 3.02
3243 3851 3.011369 TCTCTGTTAACAGCCTCCTAGGA 59.989 47.826 27.49 11.98 43.46 2.94
3244 3852 3.366396 TCTGTTAACAGCCTCCTAGGAG 58.634 50.000 29.27 29.27 43.46 3.69
3257 3865 5.693769 CTCCTAGGAGGAATGTAACCAAA 57.306 43.478 28.68 0.00 45.28 3.28
3258 3866 5.429130 CTCCTAGGAGGAATGTAACCAAAC 58.571 45.833 28.68 0.00 45.28 2.93
3259 3867 5.098663 TCCTAGGAGGAATGTAACCAAACT 58.901 41.667 7.62 0.00 42.51 2.66
3260 3868 5.189145 TCCTAGGAGGAATGTAACCAAACTC 59.811 44.000 7.62 0.00 42.51 3.01
3261 3869 5.189934 CCTAGGAGGAATGTAACCAAACTCT 59.810 44.000 1.05 0.00 37.67 3.24
3262 3870 5.167303 AGGAGGAATGTAACCAAACTCTC 57.833 43.478 0.00 0.00 0.00 3.20
3263 3871 4.846940 AGGAGGAATGTAACCAAACTCTCT 59.153 41.667 0.00 0.00 0.00 3.10
3264 3872 5.046231 AGGAGGAATGTAACCAAACTCTCTC 60.046 44.000 0.00 0.00 0.00 3.20
3265 3873 5.046231 GGAGGAATGTAACCAAACTCTCTCT 60.046 44.000 0.00 0.00 0.00 3.10
3266 3874 6.043854 AGGAATGTAACCAAACTCTCTCTC 57.956 41.667 0.00 0.00 0.00 3.20
3267 3875 5.782845 AGGAATGTAACCAAACTCTCTCTCT 59.217 40.000 0.00 0.00 0.00 3.10
3268 3876 6.271159 AGGAATGTAACCAAACTCTCTCTCTT 59.729 38.462 0.00 0.00 0.00 2.85
3269 3877 6.937465 GGAATGTAACCAAACTCTCTCTCTTT 59.063 38.462 0.00 0.00 0.00 2.52
3270 3878 8.095169 GGAATGTAACCAAACTCTCTCTCTTTA 58.905 37.037 0.00 0.00 0.00 1.85
3271 3879 8.834749 AATGTAACCAAACTCTCTCTCTTTAC 57.165 34.615 0.00 0.00 0.00 2.01
3272 3880 7.356089 TGTAACCAAACTCTCTCTCTTTACA 57.644 36.000 0.00 0.00 0.00 2.41
3273 3881 7.788026 TGTAACCAAACTCTCTCTCTTTACAA 58.212 34.615 0.00 0.00 0.00 2.41
3274 3882 8.429641 TGTAACCAAACTCTCTCTCTTTACAAT 58.570 33.333 0.00 0.00 0.00 2.71
3275 3883 7.736447 AACCAAACTCTCTCTCTTTACAATG 57.264 36.000 0.00 0.00 0.00 2.82
3276 3884 5.703130 ACCAAACTCTCTCTCTTTACAATGC 59.297 40.000 0.00 0.00 0.00 3.56
3277 3885 5.702670 CCAAACTCTCTCTCTTTACAATGCA 59.297 40.000 0.00 0.00 0.00 3.96
3278 3886 6.205464 CCAAACTCTCTCTCTTTACAATGCAA 59.795 38.462 0.00 0.00 0.00 4.08
3279 3887 7.094463 CCAAACTCTCTCTCTTTACAATGCAAT 60.094 37.037 0.00 0.00 0.00 3.56
3280 3888 6.981762 ACTCTCTCTCTTTACAATGCAATG 57.018 37.500 0.00 0.00 0.00 2.82
3281 3889 6.705302 ACTCTCTCTCTTTACAATGCAATGA 58.295 36.000 9.20 0.00 0.00 2.57
3282 3890 7.164122 ACTCTCTCTCTTTACAATGCAATGAA 58.836 34.615 9.20 0.00 0.00 2.57
3283 3891 7.663081 ACTCTCTCTCTTTACAATGCAATGAAA 59.337 33.333 9.20 4.26 0.00 2.69
3284 3892 7.810658 TCTCTCTCTTTACAATGCAATGAAAC 58.189 34.615 9.20 0.00 0.00 2.78
3285 3893 6.602179 TCTCTCTTTACAATGCAATGAAACG 58.398 36.000 9.20 0.00 0.00 3.60
3286 3894 5.153513 TCTCTTTACAATGCAATGAAACGC 58.846 37.500 9.20 0.00 0.00 4.84
3287 3895 4.864633 TCTTTACAATGCAATGAAACGCA 58.135 34.783 9.20 0.00 43.45 5.24
3288 3896 4.679197 TCTTTACAATGCAATGAAACGCAC 59.321 37.500 9.20 0.00 41.79 5.34
3289 3897 1.407434 ACAATGCAATGAAACGCACG 58.593 45.000 9.20 0.00 41.79 5.34
3290 3898 0.091678 CAATGCAATGAAACGCACGC 59.908 50.000 0.00 0.00 41.79 5.34
3291 3899 0.039256 AATGCAATGAAACGCACGCT 60.039 45.000 0.00 0.00 41.79 5.07
3292 3900 0.454957 ATGCAATGAAACGCACGCTC 60.455 50.000 0.00 0.00 41.79 5.03
3293 3901 1.207593 GCAATGAAACGCACGCTCT 59.792 52.632 0.00 0.00 0.00 4.09
3294 3902 0.790866 GCAATGAAACGCACGCTCTC 60.791 55.000 0.00 0.00 0.00 3.20
3295 3903 0.512518 CAATGAAACGCACGCTCTCA 59.487 50.000 0.00 0.00 0.00 3.27
3296 3904 1.129251 CAATGAAACGCACGCTCTCAT 59.871 47.619 0.00 0.00 0.00 2.90
3297 3905 0.723414 ATGAAACGCACGCTCTCATG 59.277 50.000 0.00 0.00 0.00 3.07
3298 3906 1.225854 GAAACGCACGCTCTCATGC 60.226 57.895 0.00 0.00 38.52 4.06
3307 3915 3.865914 GCTCTCATGCGTTTTCTCG 57.134 52.632 0.00 0.00 0.00 4.04
3308 3916 1.350193 GCTCTCATGCGTTTTCTCGA 58.650 50.000 0.00 0.00 0.00 4.04
3309 3917 1.726791 GCTCTCATGCGTTTTCTCGAA 59.273 47.619 0.00 0.00 0.00 3.71
3310 3918 2.157668 GCTCTCATGCGTTTTCTCGAAA 59.842 45.455 0.00 0.00 0.00 3.46
3311 3919 3.363970 GCTCTCATGCGTTTTCTCGAAAA 60.364 43.478 0.93 0.93 37.90 2.29
3312 3920 4.772434 CTCTCATGCGTTTTCTCGAAAAA 58.228 39.130 6.41 0.00 41.37 1.94
3341 3949 9.688592 AATAATAAAATACGAGGAGTTAGGTCG 57.311 33.333 0.00 0.00 39.63 4.79
3360 3969 0.931005 GCTGGCTTAGGAAATCGTCG 59.069 55.000 0.00 0.00 0.00 5.12
3407 4016 4.661993 TGTGCGCTGTTCACTATTAAAG 57.338 40.909 9.73 0.00 35.58 1.85
3413 4022 5.231147 GCGCTGTTCACTATTAAAGAGAGAG 59.769 44.000 0.00 0.00 0.00 3.20
3443 4063 6.299141 ACAAGAAAAGACTCAGGCATTAGAA 58.701 36.000 0.00 0.00 0.00 2.10
3450 4070 6.998968 AGACTCAGGCATTAGAAAATCTTG 57.001 37.500 0.00 0.00 0.00 3.02
3472 4092 6.921486 TGAGTAACCATAGTGTGTCCTTTA 57.079 37.500 0.00 0.00 0.00 1.85
3489 4109 6.375736 TGTCCTTTAACAGACACAACATTTCA 59.624 34.615 3.21 0.00 38.07 2.69
3493 4113 9.097257 CCTTTAACAGACACAACATTTCAAATT 57.903 29.630 0.00 0.00 0.00 1.82
3498 4118 9.598517 AACAGACACAACATTTCAAATTACAAT 57.401 25.926 0.00 0.00 0.00 2.71
3499 4119 9.598517 ACAGACACAACATTTCAAATTACAATT 57.401 25.926 0.00 0.00 0.00 2.32
3516 4162 3.560068 ACAATTTGACTGTCAAGGTCGTC 59.440 43.478 21.13 0.00 37.70 4.20
3535 4181 3.732774 CGTCGACCGAATAGGATGACAAA 60.733 47.826 10.58 0.00 45.00 2.83
3538 4184 5.047847 TCGACCGAATAGGATGACAAAATC 58.952 41.667 0.00 0.00 45.00 2.17
3539 4185 5.050490 CGACCGAATAGGATGACAAAATCT 58.950 41.667 0.00 0.00 45.00 2.40
3540 4186 6.040054 TCGACCGAATAGGATGACAAAATCTA 59.960 38.462 0.00 0.00 45.00 1.98
3568 4218 7.500227 TGTCATTTTGGAATTACAATTTGCCAA 59.500 29.630 3.35 0.00 33.18 4.52
3637 4305 5.581126 ACAAGAGCATTGTTTTGAGTTGA 57.419 34.783 1.76 0.00 0.00 3.18
3645 4313 5.576384 GCATTGTTTTGAGTTGAAGTCACAA 59.424 36.000 1.48 4.78 0.00 3.33
3648 4316 7.579589 TTGTTTTGAGTTGAAGTCACAATTG 57.420 32.000 1.48 3.24 32.36 2.32
3700 4368 5.177696 GTGTTGGTCTCACATGAAAGTAGTC 59.822 44.000 0.00 0.00 36.05 2.59
3709 4377 7.870954 TCTCACATGAAAGTAGTCGTGTATTTT 59.129 33.333 0.00 0.00 44.20 1.82
3845 4513 1.072331 GGTCCCACATGTGAACTCACT 59.928 52.381 27.46 0.00 46.55 3.41
3856 4524 3.069586 TGTGAACTCACTACCAACTCCAG 59.930 47.826 10.99 0.00 46.55 3.86
3864 4532 4.288626 TCACTACCAACTCCAGCCTTTATT 59.711 41.667 0.00 0.00 0.00 1.40
3899 4567 2.987413 TGCAAGGTTAATCGTGCTTG 57.013 45.000 23.97 4.84 41.48 4.01
3902 4570 2.606795 GCAAGGTTAATCGTGCTTGCAA 60.607 45.455 17.95 0.00 44.31 4.08
4103 4771 2.273179 TGGGGAGTCTTCGTGGACG 61.273 63.158 0.00 0.00 40.76 4.79
4189 4863 6.004574 TGCATACCTACACCTAGTATCTGAG 58.995 44.000 0.00 0.00 30.93 3.35
4198 4873 4.400884 CACCTAGTATCTGAGTCAGCTGTT 59.599 45.833 15.72 3.13 0.00 3.16
4445 5121 6.536447 AGCATCAAAACCTTGGAATTTTCAT 58.464 32.000 0.00 0.00 33.01 2.57
4470 5146 1.691434 AGGAAAGGATCGAGGAGATGC 59.309 52.381 0.00 0.00 46.56 3.91
4508 5184 2.421952 GGTGAGATGCATGTGGGTGTAT 60.422 50.000 2.46 0.00 0.00 2.29
4520 5196 1.991230 GGTGTATGCCCAGGACACT 59.009 57.895 8.63 0.00 42.50 3.55
4637 5313 4.398358 AGGTCGATCGTGAACAGAGATTTA 59.602 41.667 15.94 0.00 0.00 1.40
4648 5324 5.306937 TGAACAGAGATTTAGTGGAGTTCCA 59.693 40.000 0.00 0.00 45.30 3.53
4682 5358 4.202567 ACACCTGTTCCATTACCATGACTT 60.203 41.667 0.00 0.00 31.07 3.01
4754 5430 2.100989 GATGTTCGAGGTAGGGTGAGT 58.899 52.381 0.00 0.00 0.00 3.41
4760 5436 1.473278 CGAGGTAGGGTGAGTGACTTC 59.527 57.143 0.00 0.00 0.00 3.01
4779 5455 8.538856 GTGACTTCTCTTTCGATCTATTCATTG 58.461 37.037 0.00 0.00 0.00 2.82
4780 5456 7.223582 TGACTTCTCTTTCGATCTATTCATTGC 59.776 37.037 0.00 0.00 0.00 3.56
4799 5475 1.605058 CCGTCGTCACCCTTGAGGAT 61.605 60.000 0.00 0.00 45.82 3.24
4842 5524 1.202746 TGTGTGTGCATACTGGCTGAA 60.203 47.619 15.05 0.00 34.04 3.02
4886 5568 7.164008 GCATTGACAAAGTTGTAACATTTTTGC 59.836 33.333 0.00 0.00 42.43 3.68
4927 5609 2.123342 CGCATGGATCTCGAGAAGAAC 58.877 52.381 20.91 10.33 37.61 3.01
4936 5618 3.543665 TCTCGAGAAGAACCTACTAGCC 58.456 50.000 14.01 0.00 0.00 3.93
5003 5685 1.992557 ACAAGATAGGGCAAGGAACCA 59.007 47.619 0.00 0.00 0.00 3.67
5034 5716 5.542779 AGAGAATTAGTTTGCTCTGTTCGT 58.457 37.500 0.00 0.00 36.44 3.85
5040 5722 3.050619 AGTTTGCTCTGTTCGTAGTTCG 58.949 45.455 0.00 0.00 41.41 3.95
5056 5738 0.038744 TTCGTACCTCGGTCTCCCTT 59.961 55.000 0.00 0.00 40.32 3.95
5071 5756 1.351017 TCCCTTCCGAAGAAATGCAGT 59.649 47.619 9.87 0.00 0.00 4.40
5072 5757 1.740025 CCCTTCCGAAGAAATGCAGTC 59.260 52.381 9.87 0.00 0.00 3.51
5073 5758 2.426522 CCTTCCGAAGAAATGCAGTCA 58.573 47.619 9.87 0.00 0.00 3.41
5161 5850 2.148916 TATGCAGCTATGTACGCCAC 57.851 50.000 0.00 0.00 0.00 5.01
5170 5859 0.246635 ATGTACGCCACCTGAGTGTC 59.753 55.000 0.00 0.00 42.88 3.67
5210 5900 1.233019 CGCATCTCCAAAGGCTATGG 58.767 55.000 0.00 0.00 39.41 2.74
5244 5952 6.533730 TGGCATATTACCAGAATCTTACCAG 58.466 40.000 0.00 0.00 32.06 4.00
5268 5976 4.955450 CCATGGATCATCAAACCAAGGTTA 59.045 41.667 5.56 0.00 37.64 2.85
5269 5977 5.068198 CCATGGATCATCAAACCAAGGTTAG 59.932 44.000 5.56 0.00 37.64 2.34
5270 5978 4.599041 TGGATCATCAAACCAAGGTTAGG 58.401 43.478 4.68 1.31 37.35 2.69
5271 5979 4.044065 TGGATCATCAAACCAAGGTTAGGT 59.956 41.667 4.68 0.00 42.34 3.08
5291 5999 1.089112 TGCCATGCAGAAGATTGTCG 58.911 50.000 0.00 0.00 33.32 4.35
5295 6004 1.741706 CATGCAGAAGATTGTCGGCTT 59.258 47.619 0.00 0.00 39.20 4.35
5302 6011 0.036732 AGATTGTCGGCTTGCTCCAA 59.963 50.000 0.00 0.00 0.00 3.53
5307 6016 2.436646 CGGCTTGCTCCAATCGGT 60.437 61.111 0.00 0.00 0.00 4.69
5324 6033 6.393171 CAATCGGTGCATGAGATCTTAGATA 58.607 40.000 0.00 0.00 0.00 1.98
5333 6042 9.484806 TGCATGAGATCTTAGATAATATCCTGA 57.515 33.333 0.00 0.00 0.00 3.86
5391 6121 2.558380 GATGGACTGGGGTTCCTGGC 62.558 65.000 0.00 0.00 39.10 4.85
5402 6132 0.613012 GTTCCTGGCATTGGAGGCTT 60.613 55.000 0.00 0.00 34.76 4.35
5449 6180 1.612395 GGTGGAGGTCAGGCTCTCAG 61.612 65.000 4.35 0.00 0.00 3.35
5570 6301 9.994432 CTTTTATTTGCTAGTCCTGTAATTGAG 57.006 33.333 0.00 0.00 0.00 3.02
5576 6307 6.398918 TGCTAGTCCTGTAATTGAGAAGAAC 58.601 40.000 0.00 0.00 0.00 3.01
5581 6312 5.639931 GTCCTGTAATTGAGAAGAACCTGAC 59.360 44.000 0.00 0.00 0.00 3.51
5596 6327 6.122277 AGAACCTGACATCTCTTTTTGAACA 58.878 36.000 0.00 0.00 0.00 3.18
5597 6328 5.757850 ACCTGACATCTCTTTTTGAACAC 57.242 39.130 0.00 0.00 0.00 3.32
5598 6329 4.580580 ACCTGACATCTCTTTTTGAACACC 59.419 41.667 0.00 0.00 0.00 4.16
5603 6334 5.906073 ACATCTCTTTTTGAACACCAAAGG 58.094 37.500 0.00 0.00 44.67 3.11
5604 6335 5.422012 ACATCTCTTTTTGAACACCAAAGGT 59.578 36.000 0.00 0.00 44.67 3.50
5617 6348 2.557920 CAAAGGTGGAAGAGCTCACT 57.442 50.000 17.77 1.58 34.57 3.41
5635 6366 5.335191 GCTCACTGTTGGGATAAAAGAAGTG 60.335 44.000 0.00 0.00 0.00 3.16
5643 6374 4.105697 TGGGATAAAAGAAGTGGAACAGGT 59.894 41.667 0.00 0.00 41.80 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.961265 CTCAGATCGTATACTTTGTATACCAAA 57.039 33.333 17.15 0.99 40.71 3.28
4 5 9.128404 ACTCAGATCGTATACTTTGTATACCAA 57.872 33.333 17.15 9.64 0.00 3.67
5 6 8.687292 ACTCAGATCGTATACTTTGTATACCA 57.313 34.615 17.15 9.06 0.00 3.25
6 7 7.956403 CGACTCAGATCGTATACTTTGTATACC 59.044 40.741 17.15 7.81 37.33 2.73
7 8 7.478044 GCGACTCAGATCGTATACTTTGTATAC 59.522 40.741 14.46 14.46 44.13 1.47
8 9 7.172019 TGCGACTCAGATCGTATACTTTGTATA 59.828 37.037 0.56 0.00 44.13 1.47
9 10 6.017357 TGCGACTCAGATCGTATACTTTGTAT 60.017 38.462 0.56 0.00 44.13 2.29
10 11 5.295045 TGCGACTCAGATCGTATACTTTGTA 59.705 40.000 0.56 0.00 44.13 2.41
41 42 4.261578 AGTGCAATGCAAAATGCTAAGT 57.738 36.364 10.44 4.80 45.31 2.24
52 80 2.340809 GCCAGCAAGTGCAATGCA 59.659 55.556 23.19 2.72 46.22 3.96
65 93 0.169672 CAAATCTGCTTCACCGCCAG 59.830 55.000 0.00 0.00 0.00 4.85
84 112 2.757314 CCTCCAGGCTCCAAAAGATTTC 59.243 50.000 0.00 0.00 0.00 2.17
135 171 1.734465 GACGGGAAATTGCTCTGAGTG 59.266 52.381 6.53 0.00 0.00 3.51
136 172 1.347707 TGACGGGAAATTGCTCTGAGT 59.652 47.619 6.53 0.00 0.00 3.41
137 173 2.005451 CTGACGGGAAATTGCTCTGAG 58.995 52.381 0.00 0.00 0.00 3.35
138 174 1.945819 GCTGACGGGAAATTGCTCTGA 60.946 52.381 0.00 0.00 0.00 3.27
186 228 2.744202 CGAGGTAAATCTGCTGCAACTT 59.256 45.455 3.02 0.00 0.00 2.66
191 233 0.933796 GCTCGAGGTAAATCTGCTGC 59.066 55.000 15.58 0.00 0.00 5.25
211 253 1.001706 CATCGTCGAGAAGGGCGATAA 60.002 52.381 6.10 0.00 41.35 1.75
213 255 1.360551 CATCGTCGAGAAGGGCGAT 59.639 57.895 0.00 0.99 43.63 4.58
336 378 2.490328 GGCTGATGAAGTCGAGAGAG 57.510 55.000 0.00 0.00 43.49 3.20
343 385 0.809241 CTGAGCCGGCTGATGAAGTC 60.809 60.000 38.41 17.98 0.00 3.01
353 395 1.524849 GGGAGAATTCTGAGCCGGC 60.525 63.158 21.89 21.89 0.00 6.13
356 398 1.506025 AGGAGGGAGAATTCTGAGCC 58.494 55.000 14.00 7.94 0.00 4.70
368 410 1.008327 TGCTCATCTGGTTAGGAGGGA 59.992 52.381 0.00 0.00 0.00 4.20
372 414 3.703556 CTCTTCTGCTCATCTGGTTAGGA 59.296 47.826 0.00 0.00 0.00 2.94
394 450 2.897969 TCCTCCAAGAAGGTACTGTGAC 59.102 50.000 0.00 0.00 40.86 3.67
395 451 2.897969 GTCCTCCAAGAAGGTACTGTGA 59.102 50.000 0.00 0.00 40.86 3.58
560 616 2.046507 GTGCTCCTCCTGCTGGTG 60.047 66.667 9.73 7.12 34.23 4.17
642 726 2.601666 AGCCACTGACCGAGCTGA 60.602 61.111 0.00 0.00 33.41 4.26
661 745 1.963338 ACCGCTTCAAGACTGCAGC 60.963 57.895 15.27 6.85 38.33 5.25
662 746 1.572085 CCACCGCTTCAAGACTGCAG 61.572 60.000 13.48 13.48 0.00 4.41
663 747 1.597854 CCACCGCTTCAAGACTGCA 60.598 57.895 0.00 0.00 0.00 4.41
664 748 2.970974 GCCACCGCTTCAAGACTGC 61.971 63.158 0.00 0.00 0.00 4.40
668 752 4.697756 CCCGCCACCGCTTCAAGA 62.698 66.667 0.00 0.00 0.00 3.02
865 952 0.896226 GCTACCTCGGTTCTCCTTGT 59.104 55.000 0.00 0.00 0.00 3.16
941 1036 5.033589 AGAAAATGCAGGAGGAGTAGATG 57.966 43.478 0.00 0.00 0.00 2.90
942 1037 4.102367 GGAGAAAATGCAGGAGGAGTAGAT 59.898 45.833 0.00 0.00 0.00 1.98
943 1038 3.452627 GGAGAAAATGCAGGAGGAGTAGA 59.547 47.826 0.00 0.00 0.00 2.59
945 1040 2.168521 CGGAGAAAATGCAGGAGGAGTA 59.831 50.000 0.00 0.00 0.00 2.59
946 1041 1.065854 CGGAGAAAATGCAGGAGGAGT 60.066 52.381 0.00 0.00 0.00 3.85
947 1042 1.208052 TCGGAGAAAATGCAGGAGGAG 59.792 52.381 0.00 0.00 0.00 3.69
948 1043 1.066143 GTCGGAGAAAATGCAGGAGGA 60.066 52.381 0.00 0.00 39.69 3.71
949 1044 1.065854 AGTCGGAGAAAATGCAGGAGG 60.066 52.381 0.00 0.00 39.69 4.30
951 1046 1.404181 CGAGTCGGAGAAAATGCAGGA 60.404 52.381 4.10 0.00 39.69 3.86
952 1047 1.002366 CGAGTCGGAGAAAATGCAGG 58.998 55.000 4.10 0.00 39.69 4.85
959 1054 2.261671 GGCAGCGAGTCGGAGAAA 59.738 61.111 15.52 0.00 39.69 2.52
1281 1846 0.892755 TCCGTATGGTGTGGAGTGTC 59.107 55.000 0.00 0.00 36.30 3.67
1284 1849 2.032620 GAGATCCGTATGGTGTGGAGT 58.967 52.381 0.00 0.00 34.75 3.85
1295 1868 1.492764 GGGTTGGAAGGAGATCCGTA 58.507 55.000 0.00 0.00 42.76 4.02
1307 1880 3.177884 AGCAGCACAGGGGTTGGA 61.178 61.111 0.00 0.00 0.00 3.53
1340 1934 0.745845 GTAGACGCGGAGGTGTAGGA 60.746 60.000 12.47 0.00 36.92 2.94
1342 1936 0.656785 GAGTAGACGCGGAGGTGTAG 59.343 60.000 12.47 0.00 36.92 2.74
1343 1937 0.745845 GGAGTAGACGCGGAGGTGTA 60.746 60.000 12.47 0.00 36.92 2.90
1344 1938 2.045131 GGAGTAGACGCGGAGGTGT 61.045 63.158 12.47 0.00 40.22 4.16
1345 1939 1.384989 ATGGAGTAGACGCGGAGGTG 61.385 60.000 12.47 0.00 0.00 4.00
1346 1940 0.683504 AATGGAGTAGACGCGGAGGT 60.684 55.000 12.47 0.00 0.00 3.85
1347 1941 0.249073 CAATGGAGTAGACGCGGAGG 60.249 60.000 12.47 0.00 0.00 4.30
1348 1942 0.456221 ACAATGGAGTAGACGCGGAG 59.544 55.000 12.47 0.00 0.00 4.63
1349 1943 0.892755 AACAATGGAGTAGACGCGGA 59.107 50.000 12.47 0.00 0.00 5.54
1350 1944 2.159282 AGTAACAATGGAGTAGACGCGG 60.159 50.000 12.47 0.00 0.00 6.46
1352 1946 3.130693 AGGAGTAACAATGGAGTAGACGC 59.869 47.826 0.00 0.00 0.00 5.19
1353 1947 4.985538 AGGAGTAACAATGGAGTAGACG 57.014 45.455 0.00 0.00 0.00 4.18
1354 1948 5.221283 GGCTAGGAGTAACAATGGAGTAGAC 60.221 48.000 0.00 0.00 0.00 2.59
1355 1949 4.894114 GGCTAGGAGTAACAATGGAGTAGA 59.106 45.833 0.00 0.00 0.00 2.59
1358 1952 2.431057 CGGCTAGGAGTAACAATGGAGT 59.569 50.000 0.00 0.00 0.00 3.85
1368 1962 0.535335 CAGGTTTGCGGCTAGGAGTA 59.465 55.000 0.00 0.00 0.00 2.59
1378 1972 2.027625 GTCGGAGGTCAGGTTTGCG 61.028 63.158 0.00 0.00 0.00 4.85
1388 1982 2.584391 GGCAACTGAGGTCGGAGGT 61.584 63.158 0.00 0.00 0.00 3.85
1393 1987 1.399440 CATTCATGGCAACTGAGGTCG 59.601 52.381 0.00 0.00 37.61 4.79
1460 2058 2.293399 ACCGTGGCAAGAAAAATGAGAC 59.707 45.455 0.76 0.00 0.00 3.36
1462 2060 2.293122 TCACCGTGGCAAGAAAAATGAG 59.707 45.455 0.76 0.00 0.00 2.90
1475 2073 2.224066 GGATCTTCACCTATCACCGTGG 60.224 54.545 0.00 0.00 0.00 4.94
1522 2120 0.319900 CGTCCTTGTCCAGTGTCCTG 60.320 60.000 0.00 0.00 38.50 3.86
1603 2201 7.830697 ACATATGTCTGATTGATTTCCTTGTCA 59.169 33.333 1.41 0.00 0.00 3.58
1678 2276 5.560760 GCGGTTAGTAAACTTAAACACACCC 60.561 44.000 0.00 0.00 35.81 4.61
1754 2353 2.485426 CGATCTGCGGAAATATGGCATT 59.515 45.455 4.78 0.00 35.91 3.56
1813 2412 4.938226 GGTGCTCAAATAGTAGAAGCAAGT 59.062 41.667 0.00 0.00 32.46 3.16
1820 2419 4.919774 TTTGGGGTGCTCAAATAGTAGA 57.080 40.909 0.00 0.00 0.00 2.59
1826 2425 4.286549 TGATTTGATTTGGGGTGCTCAAAT 59.713 37.500 8.61 8.61 45.90 2.32
1838 2437 4.216902 TGACCAGCTGTCTGATTTGATTTG 59.783 41.667 13.81 0.00 44.75 2.32
1855 2454 2.608752 GCCAAAAGACAATGCTGACCAG 60.609 50.000 0.00 0.00 0.00 4.00
1950 2549 2.357034 GCCCACGAGCGAAACAGA 60.357 61.111 0.00 0.00 0.00 3.41
1977 2576 4.464244 GGAGTGAGGATGATGGATCGATTA 59.536 45.833 0.00 0.00 30.87 1.75
2001 2600 0.032267 GCGAGTGGCTATGTACCTCC 59.968 60.000 0.00 0.00 39.11 4.30
2008 2607 3.634072 GCAGCGCGAGTGGCTATG 61.634 66.667 12.10 0.00 39.08 2.23
2020 2619 3.209410 AGGGAAAATATGAAGAGCAGCG 58.791 45.455 0.00 0.00 0.00 5.18
2135 2743 2.751806 GTTGAATCAGGGAGCCTTCTTG 59.248 50.000 0.00 0.00 0.00 3.02
2212 2820 9.838975 CATAGCAAGAACAAATACAACATGTAA 57.161 29.630 0.00 0.00 36.31 2.41
2246 2854 5.645929 AGATCGAGATATGCTAGGTGTACAG 59.354 44.000 0.00 0.00 0.00 2.74
2265 2873 9.034544 TGTGATTATATTCAACAAGACAGATCG 57.965 33.333 0.00 0.00 0.00 3.69
2301 2909 4.020307 CAGTTTTTATGCTGGGATTTGGGT 60.020 41.667 0.00 0.00 0.00 4.51
2313 2921 3.716601 ACACAACTGCCAGTTTTTATGC 58.283 40.909 7.51 0.00 36.03 3.14
2332 2940 4.887071 ACATTAAACAAAGACCAGCAGACA 59.113 37.500 0.00 0.00 0.00 3.41
2558 3166 1.142870 GAATCATCCACATTCCCCGGA 59.857 52.381 0.73 0.00 0.00 5.14
2623 3231 9.744468 GAAAGTTTGCTAAATACTTCCTTTTCA 57.256 29.630 0.00 0.00 31.26 2.69
2756 3364 9.445878 CACAGAAGCCATACTGATTAATATCAT 57.554 33.333 0.00 0.00 39.94 2.45
2757 3365 7.879677 CCACAGAAGCCATACTGATTAATATCA 59.120 37.037 0.00 0.00 38.45 2.15
2800 3408 4.657814 ACTTTTCTTAAGGGAGCCATGA 57.342 40.909 1.85 0.00 0.00 3.07
2801 3409 7.410120 AATAACTTTTCTTAAGGGAGCCATG 57.590 36.000 1.85 0.00 0.00 3.66
2837 3445 4.002316 TCATTCAGAATCATGTCGTTGCA 58.998 39.130 0.00 0.00 0.00 4.08
2875 3483 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
2876 3484 3.366577 CGCCTTACCGCCTTAAAAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
2877 3485 2.030981 CGCCTTACCGCCTTAAAAACAA 60.031 45.455 0.00 0.00 0.00 2.83
2878 3486 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
2879 3487 1.536766 ACGCCTTACCGCCTTAAAAAC 59.463 47.619 0.00 0.00 0.00 2.43
2880 3488 1.805943 GACGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
2881 3489 1.441738 GACGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
2882 3490 0.391528 GGACGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
2883 3491 1.218854 GGACGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
2884 3492 0.395586 TAGGACGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 36.58 2.69
2885 3493 1.259840 TTAGGACGCCTTACCGCCTT 61.260 55.000 3.71 0.00 36.58 4.35
2886 3494 1.673808 CTTAGGACGCCTTACCGCCT 61.674 60.000 3.71 0.00 38.01 5.52
2887 3495 1.227176 CTTAGGACGCCTTACCGCC 60.227 63.158 3.71 0.00 34.61 6.13
2888 3496 1.227176 CCTTAGGACGCCTTACCGC 60.227 63.158 3.71 0.00 34.61 5.68
2889 3497 1.227176 GCCTTAGGACGCCTTACCG 60.227 63.158 0.69 0.00 34.61 4.02
2890 3498 1.227176 CGCCTTAGGACGCCTTACC 60.227 63.158 0.69 0.00 34.61 2.85
2891 3499 0.248949 CTCGCCTTAGGACGCCTTAC 60.249 60.000 0.69 0.00 34.61 2.34
2892 3500 2.012902 GCTCGCCTTAGGACGCCTTA 62.013 60.000 0.69 0.00 34.61 2.69
2893 3501 2.893398 CTCGCCTTAGGACGCCTT 59.107 61.111 0.69 0.00 34.61 4.35
2894 3502 3.839432 GCTCGCCTTAGGACGCCT 61.839 66.667 0.69 3.87 37.71 5.52
2895 3503 4.143333 TGCTCGCCTTAGGACGCC 62.143 66.667 0.69 1.18 0.00 5.68
2896 3504 2.886124 GTGCTCGCCTTAGGACGC 60.886 66.667 0.69 0.87 0.00 5.19
2897 3505 2.202756 GGTGCTCGCCTTAGGACG 60.203 66.667 0.69 5.55 38.60 4.79
2898 3506 1.448013 GTGGTGCTCGCCTTAGGAC 60.448 63.158 0.69 0.00 37.12 3.85
2899 3507 2.656069 GGTGGTGCTCGCCTTAGGA 61.656 63.158 0.69 0.00 42.62 2.94
2900 3508 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
2901 3509 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
2902 3510 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
2907 3515 4.077184 TAAGGCGGGTGGTGCTCG 62.077 66.667 0.00 0.00 45.55 5.03
2908 3516 2.125106 CTAAGGCGGGTGGTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
2909 3517 4.410400 GCTAAGGCGGGTGGTGCT 62.410 66.667 0.00 0.00 0.00 4.40
2948 3556 1.681264 ACAAATATGCCCGCCTTAAGC 59.319 47.619 0.00 0.00 38.52 3.09
2949 3557 4.023193 CCTTACAAATATGCCCGCCTTAAG 60.023 45.833 0.00 0.00 0.00 1.85
2950 3558 3.886505 CCTTACAAATATGCCCGCCTTAA 59.113 43.478 0.00 0.00 0.00 1.85
2951 3559 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
2952 3560 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
2953 3561 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
2954 3562 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
2955 3563 1.028905 TGCCTTACAAATATGCCCGC 58.971 50.000 0.00 0.00 0.00 6.13
2956 3564 2.033299 CAGTGCCTTACAAATATGCCCG 59.967 50.000 0.00 0.00 0.00 6.13
2957 3565 2.223805 GCAGTGCCTTACAAATATGCCC 60.224 50.000 2.85 0.00 0.00 5.36
2958 3566 2.223805 GGCAGTGCCTTACAAATATGCC 60.224 50.000 27.48 0.00 46.69 4.40
2959 3567 3.084070 GGCAGTGCCTTACAAATATGC 57.916 47.619 27.48 0.00 46.69 3.14
2994 3602 1.112113 TCCTGCCTTAGACGCTTAGG 58.888 55.000 7.32 7.32 33.87 2.69
2995 3603 1.476891 TGTCCTGCCTTAGACGCTTAG 59.523 52.381 0.00 0.00 35.71 2.18
2996 3604 1.203994 GTGTCCTGCCTTAGACGCTTA 59.796 52.381 0.00 0.00 39.77 3.09
2997 3605 0.037232 GTGTCCTGCCTTAGACGCTT 60.037 55.000 0.00 0.00 39.77 4.68
2998 3606 1.592223 GTGTCCTGCCTTAGACGCT 59.408 57.895 0.00 0.00 39.77 5.07
2999 3607 1.448013 GGTGTCCTGCCTTAGACGC 60.448 63.158 0.00 0.00 41.67 5.19
3000 3608 0.608640 AAGGTGTCCTGCCTTAGACG 59.391 55.000 0.00 0.00 43.87 4.18
3001 3609 3.975168 TTAAGGTGTCCTGCCTTAGAC 57.025 47.619 4.33 0.00 45.83 2.59
3002 3610 6.630203 TTATTTAAGGTGTCCTGCCTTAGA 57.370 37.500 4.33 1.31 45.83 2.10
3003 3611 8.429641 TCTATTATTTAAGGTGTCCTGCCTTAG 58.570 37.037 4.33 0.00 45.83 2.18
3004 3612 8.326765 TCTATTATTTAAGGTGTCCTGCCTTA 57.673 34.615 0.00 0.00 43.87 2.69
3005 3613 7.092399 ACTCTATTATTTAAGGTGTCCTGCCTT 60.092 37.037 2.07 2.07 46.90 4.35
3006 3614 6.387220 ACTCTATTATTTAAGGTGTCCTGCCT 59.613 38.462 0.00 0.00 38.11 4.75
3007 3615 6.592870 ACTCTATTATTTAAGGTGTCCTGCC 58.407 40.000 0.00 0.00 32.13 4.85
3008 3616 8.639761 TCTACTCTATTATTTAAGGTGTCCTGC 58.360 37.037 0.00 0.00 32.13 4.85
3027 3635 8.951243 GCAAATCAAGGTTTTATCTTCTACTCT 58.049 33.333 0.00 0.00 0.00 3.24
3028 3636 8.730680 TGCAAATCAAGGTTTTATCTTCTACTC 58.269 33.333 0.00 0.00 0.00 2.59
3029 3637 8.635765 TGCAAATCAAGGTTTTATCTTCTACT 57.364 30.769 0.00 0.00 0.00 2.57
3030 3638 9.860898 AATGCAAATCAAGGTTTTATCTTCTAC 57.139 29.630 0.00 0.00 0.00 2.59
3032 3640 8.810041 AGAATGCAAATCAAGGTTTTATCTTCT 58.190 29.630 0.00 0.00 0.00 2.85
3033 3641 8.992835 AGAATGCAAATCAAGGTTTTATCTTC 57.007 30.769 0.00 0.00 0.00 2.87
3132 3740 8.358148 GTGCTAGTATAAGTAAATACTCTGGCA 58.642 37.037 11.45 11.45 40.90 4.92
3156 3764 2.638074 GCAACGCACGTGCATTGTG 61.638 57.895 39.08 29.08 44.94 3.33
3158 3766 1.059657 GTAGCAACGCACGTGCATTG 61.060 55.000 37.00 37.00 45.78 2.82
3159 3767 1.206578 GTAGCAACGCACGTGCATT 59.793 52.632 37.03 28.37 42.21 3.56
3160 3768 2.860293 GTAGCAACGCACGTGCAT 59.140 55.556 37.03 23.73 42.21 3.96
3161 3769 3.697444 CGTAGCAACGCACGTGCA 61.697 61.111 37.03 16.48 43.12 4.57
3170 3778 7.851963 TGGCGTATTTTATTATTTCGTAGCAAC 59.148 33.333 0.00 0.00 0.00 4.17
3171 3779 7.917597 TGGCGTATTTTATTATTTCGTAGCAA 58.082 30.769 0.00 0.00 0.00 3.91
3172 3780 7.438757 TCTGGCGTATTTTATTATTTCGTAGCA 59.561 33.333 0.00 0.00 0.00 3.49
3173 3781 7.739043 GTCTGGCGTATTTTATTATTTCGTAGC 59.261 37.037 0.00 0.00 0.00 3.58
3174 3782 8.975439 AGTCTGGCGTATTTTATTATTTCGTAG 58.025 33.333 0.00 0.00 0.00 3.51
3175 3783 8.876275 AGTCTGGCGTATTTTATTATTTCGTA 57.124 30.769 0.00 0.00 0.00 3.43
3176 3784 7.781548 AGTCTGGCGTATTTTATTATTTCGT 57.218 32.000 0.00 0.00 0.00 3.85
3177 3785 7.586300 CCAAGTCTGGCGTATTTTATTATTTCG 59.414 37.037 0.00 0.00 35.39 3.46
3178 3786 7.860872 CCCAAGTCTGGCGTATTTTATTATTTC 59.139 37.037 0.00 0.00 41.99 2.17
3179 3787 7.558444 TCCCAAGTCTGGCGTATTTTATTATTT 59.442 33.333 0.00 0.00 41.99 1.40
3180 3788 7.012989 GTCCCAAGTCTGGCGTATTTTATTATT 59.987 37.037 0.00 0.00 41.99 1.40
3181 3789 6.485648 GTCCCAAGTCTGGCGTATTTTATTAT 59.514 38.462 0.00 0.00 41.99 1.28
3182 3790 5.818857 GTCCCAAGTCTGGCGTATTTTATTA 59.181 40.000 0.00 0.00 41.99 0.98
3183 3791 4.638865 GTCCCAAGTCTGGCGTATTTTATT 59.361 41.667 0.00 0.00 41.99 1.40
3184 3792 4.196971 GTCCCAAGTCTGGCGTATTTTAT 58.803 43.478 0.00 0.00 41.99 1.40
3185 3793 3.602483 GTCCCAAGTCTGGCGTATTTTA 58.398 45.455 0.00 0.00 41.99 1.52
3186 3794 2.433436 GTCCCAAGTCTGGCGTATTTT 58.567 47.619 0.00 0.00 41.99 1.82
3187 3795 1.674817 CGTCCCAAGTCTGGCGTATTT 60.675 52.381 0.00 0.00 41.99 1.40
3188 3796 0.108329 CGTCCCAAGTCTGGCGTATT 60.108 55.000 0.00 0.00 41.99 1.89
3189 3797 1.255667 ACGTCCCAAGTCTGGCGTAT 61.256 55.000 0.00 0.00 38.97 3.06
3190 3798 1.870055 GACGTCCCAAGTCTGGCGTA 61.870 60.000 3.51 0.00 40.28 4.42
3191 3799 3.222354 GACGTCCCAAGTCTGGCGT 62.222 63.158 3.51 0.00 42.11 5.68
3192 3800 2.432628 GACGTCCCAAGTCTGGCG 60.433 66.667 3.51 0.00 41.99 5.69
3193 3801 2.047179 GGACGTCCCAAGTCTGGC 60.047 66.667 24.75 0.00 41.99 4.85
3194 3802 3.466881 TGGACGTCCCAAGTCTGG 58.533 61.111 31.19 0.00 43.29 3.86
3201 3809 2.232941 GACTGAATTAGTGGACGTCCCA 59.767 50.000 31.19 18.23 44.25 4.37
3202 3810 2.496470 AGACTGAATTAGTGGACGTCCC 59.504 50.000 31.19 21.56 40.53 4.46
3203 3811 3.444388 AGAGACTGAATTAGTGGACGTCC 59.556 47.826 28.17 28.17 40.53 4.79
3204 3812 4.082679 ACAGAGACTGAATTAGTGGACGTC 60.083 45.833 7.13 7.13 40.53 4.34
3205 3813 3.827302 ACAGAGACTGAATTAGTGGACGT 59.173 43.478 5.76 0.00 40.53 4.34
3206 3814 4.442375 ACAGAGACTGAATTAGTGGACG 57.558 45.455 5.76 0.00 40.53 4.79
3207 3815 7.152645 TGTTAACAGAGACTGAATTAGTGGAC 58.847 38.462 3.59 0.00 40.53 4.02
3208 3816 7.297936 TGTTAACAGAGACTGAATTAGTGGA 57.702 36.000 3.59 0.00 40.53 4.02
3209 3817 6.091441 GCTGTTAACAGAGACTGAATTAGTGG 59.909 42.308 34.43 7.39 46.59 4.00
3210 3818 6.091441 GGCTGTTAACAGAGACTGAATTAGTG 59.909 42.308 34.43 7.75 46.59 2.74
3211 3819 6.014156 AGGCTGTTAACAGAGACTGAATTAGT 60.014 38.462 34.43 6.71 46.59 2.24
3212 3820 6.402222 AGGCTGTTAACAGAGACTGAATTAG 58.598 40.000 34.43 8.78 46.59 1.73
3213 3821 6.360370 AGGCTGTTAACAGAGACTGAATTA 57.640 37.500 34.43 0.00 46.59 1.40
3214 3822 5.234466 AGGCTGTTAACAGAGACTGAATT 57.766 39.130 34.43 8.53 46.59 2.17
3215 3823 4.323104 GGAGGCTGTTAACAGAGACTGAAT 60.323 45.833 34.43 12.79 46.59 2.57
3216 3824 3.006967 GGAGGCTGTTAACAGAGACTGAA 59.993 47.826 34.43 0.00 46.59 3.02
3217 3825 2.563179 GGAGGCTGTTAACAGAGACTGA 59.437 50.000 34.43 0.00 46.59 3.41
3218 3826 2.564947 AGGAGGCTGTTAACAGAGACTG 59.435 50.000 34.43 12.25 46.59 3.51
3219 3827 2.896039 AGGAGGCTGTTAACAGAGACT 58.104 47.619 34.43 26.80 46.59 3.24
3220 3828 3.131400 CCTAGGAGGCTGTTAACAGAGAC 59.869 52.174 34.43 23.29 46.59 3.36
3221 3829 3.011369 TCCTAGGAGGCTGTTAACAGAGA 59.989 47.826 34.43 15.65 45.37 3.10
3222 3830 3.366396 TCCTAGGAGGCTGTTAACAGAG 58.634 50.000 34.43 21.93 45.37 3.35
3223 3831 3.366396 CTCCTAGGAGGCTGTTAACAGA 58.634 50.000 34.43 14.70 41.02 3.41
3224 3832 3.810310 CTCCTAGGAGGCTGTTAACAG 57.190 52.381 28.68 27.85 38.88 3.16
3235 3843 5.189934 AGTTTGGTTACATTCCTCCTAGGAG 59.810 44.000 29.27 29.27 46.73 3.69
3236 3844 5.098663 AGTTTGGTTACATTCCTCCTAGGA 58.901 41.667 11.98 11.98 44.10 2.94
3237 3845 5.189934 AGAGTTTGGTTACATTCCTCCTAGG 59.810 44.000 0.82 0.82 36.46 3.02
3238 3846 6.155393 AGAGAGTTTGGTTACATTCCTCCTAG 59.845 42.308 0.00 0.00 0.00 3.02
3239 3847 6.023603 AGAGAGTTTGGTTACATTCCTCCTA 58.976 40.000 0.00 0.00 0.00 2.94
3240 3848 4.846940 AGAGAGTTTGGTTACATTCCTCCT 59.153 41.667 0.00 0.00 0.00 3.69
3241 3849 5.046231 AGAGAGAGTTTGGTTACATTCCTCC 60.046 44.000 0.00 0.00 0.00 4.30
3242 3850 6.043854 AGAGAGAGTTTGGTTACATTCCTC 57.956 41.667 0.00 0.00 0.00 3.71
3243 3851 5.782845 AGAGAGAGAGTTTGGTTACATTCCT 59.217 40.000 0.00 0.00 0.00 3.36
3244 3852 6.043854 AGAGAGAGAGTTTGGTTACATTCC 57.956 41.667 0.00 0.00 0.00 3.01
3245 3853 7.971183 AAAGAGAGAGAGTTTGGTTACATTC 57.029 36.000 0.00 0.00 0.00 2.67
3246 3854 8.429641 TGTAAAGAGAGAGAGTTTGGTTACATT 58.570 33.333 0.00 0.00 0.00 2.71
3247 3855 7.963532 TGTAAAGAGAGAGAGTTTGGTTACAT 58.036 34.615 0.00 0.00 0.00 2.29
3248 3856 7.356089 TGTAAAGAGAGAGAGTTTGGTTACA 57.644 36.000 0.00 0.00 0.00 2.41
3249 3857 8.713271 CATTGTAAAGAGAGAGAGTTTGGTTAC 58.287 37.037 0.00 0.00 0.00 2.50
3250 3858 7.387948 GCATTGTAAAGAGAGAGAGTTTGGTTA 59.612 37.037 0.00 0.00 0.00 2.85
3251 3859 6.205658 GCATTGTAAAGAGAGAGAGTTTGGTT 59.794 38.462 0.00 0.00 0.00 3.67
3252 3860 5.703130 GCATTGTAAAGAGAGAGAGTTTGGT 59.297 40.000 0.00 0.00 0.00 3.67
3253 3861 5.702670 TGCATTGTAAAGAGAGAGAGTTTGG 59.297 40.000 0.00 0.00 0.00 3.28
3254 3862 6.791887 TGCATTGTAAAGAGAGAGAGTTTG 57.208 37.500 0.00 0.00 0.00 2.93
3255 3863 7.663081 TCATTGCATTGTAAAGAGAGAGAGTTT 59.337 33.333 8.36 0.00 0.00 2.66
3256 3864 7.164122 TCATTGCATTGTAAAGAGAGAGAGTT 58.836 34.615 8.36 0.00 0.00 3.01
3257 3865 6.705302 TCATTGCATTGTAAAGAGAGAGAGT 58.295 36.000 8.36 0.00 0.00 3.24
3258 3866 7.606858 TTCATTGCATTGTAAAGAGAGAGAG 57.393 36.000 8.36 0.00 0.00 3.20
3259 3867 7.360353 CGTTTCATTGCATTGTAAAGAGAGAGA 60.360 37.037 8.36 0.00 0.00 3.10
3260 3868 6.740002 CGTTTCATTGCATTGTAAAGAGAGAG 59.260 38.462 8.36 0.00 0.00 3.20
3261 3869 6.602179 CGTTTCATTGCATTGTAAAGAGAGA 58.398 36.000 8.36 0.00 0.00 3.10
3262 3870 5.284660 GCGTTTCATTGCATTGTAAAGAGAG 59.715 40.000 14.57 6.23 0.00 3.20
3263 3871 5.153513 GCGTTTCATTGCATTGTAAAGAGA 58.846 37.500 14.57 0.00 0.00 3.10
3264 3872 4.916831 TGCGTTTCATTGCATTGTAAAGAG 59.083 37.500 14.57 9.40 35.90 2.85
3265 3873 4.679197 GTGCGTTTCATTGCATTGTAAAGA 59.321 37.500 14.57 0.00 43.96 2.52
3266 3874 4.431471 CGTGCGTTTCATTGCATTGTAAAG 60.431 41.667 8.36 8.54 43.96 1.85
3267 3875 3.423536 CGTGCGTTTCATTGCATTGTAAA 59.576 39.130 8.36 5.59 43.96 2.01
3268 3876 2.976509 CGTGCGTTTCATTGCATTGTAA 59.023 40.909 8.36 2.83 43.96 2.41
3269 3877 2.579541 CGTGCGTTTCATTGCATTGTA 58.420 42.857 8.36 0.00 43.96 2.41
3270 3878 1.407434 CGTGCGTTTCATTGCATTGT 58.593 45.000 8.36 0.00 43.96 2.71
3271 3879 0.091678 GCGTGCGTTTCATTGCATTG 59.908 50.000 2.08 2.08 43.96 2.82
3272 3880 0.039256 AGCGTGCGTTTCATTGCATT 60.039 45.000 0.00 0.00 43.96 3.56
3273 3881 0.454957 GAGCGTGCGTTTCATTGCAT 60.455 50.000 0.00 0.00 43.96 3.96
3274 3882 1.082169 GAGCGTGCGTTTCATTGCA 60.082 52.632 0.00 0.00 39.13 4.08
3275 3883 0.790866 GAGAGCGTGCGTTTCATTGC 60.791 55.000 0.00 0.00 0.00 3.56
3276 3884 0.512518 TGAGAGCGTGCGTTTCATTG 59.487 50.000 0.00 0.00 0.00 2.82
3277 3885 1.129251 CATGAGAGCGTGCGTTTCATT 59.871 47.619 0.00 0.00 0.00 2.57
3278 3886 0.723414 CATGAGAGCGTGCGTTTCAT 59.277 50.000 0.00 3.92 0.00 2.57
3279 3887 1.900585 GCATGAGAGCGTGCGTTTCA 61.901 55.000 0.00 0.04 46.06 2.69
3280 3888 1.225854 GCATGAGAGCGTGCGTTTC 60.226 57.895 0.00 0.00 46.06 2.78
3281 3889 2.863153 GCATGAGAGCGTGCGTTT 59.137 55.556 0.00 0.00 46.06 3.60
3289 3897 1.350193 TCGAGAAAACGCATGAGAGC 58.650 50.000 2.50 0.00 0.00 4.09
3290 3898 4.389664 TTTTCGAGAAAACGCATGAGAG 57.610 40.909 2.50 0.00 35.57 3.20
3291 3899 4.804608 TTTTTCGAGAAAACGCATGAGA 57.195 36.364 10.18 0.00 39.70 3.27
3315 3923 9.688592 CGACCTAACTCCTCGTATTTTATTATT 57.311 33.333 0.00 0.00 0.00 1.40
3316 3924 7.811713 GCGACCTAACTCCTCGTATTTTATTAT 59.188 37.037 0.00 0.00 0.00 1.28
3317 3925 7.013655 AGCGACCTAACTCCTCGTATTTTATTA 59.986 37.037 0.00 0.00 0.00 0.98
3318 3926 5.981915 GCGACCTAACTCCTCGTATTTTATT 59.018 40.000 0.00 0.00 0.00 1.40
3341 3949 0.931005 CGACGATTTCCTAAGCCAGC 59.069 55.000 0.00 0.00 0.00 4.85
3360 3969 3.311106 CCGCATGATGCCAACATATTTC 58.689 45.455 12.40 0.00 41.12 2.17
3407 4016 9.482627 TGAGTCTTTTCTTGTATTTTCTCTCTC 57.517 33.333 0.00 0.00 0.00 3.20
3413 4022 6.970484 TGCCTGAGTCTTTTCTTGTATTTTC 58.030 36.000 0.00 0.00 0.00 2.29
3443 4063 6.879458 GGACACACTATGGTTACTCAAGATTT 59.121 38.462 0.00 0.00 0.00 2.17
3450 4070 7.156673 TGTTAAAGGACACACTATGGTTACTC 58.843 38.462 0.00 0.00 0.00 2.59
3472 4092 8.994429 TTGTAATTTGAAATGTTGTGTCTGTT 57.006 26.923 0.00 0.00 0.00 3.16
3489 4109 7.138736 CGACCTTGACAGTCAAATTGTAATTT 58.861 34.615 16.85 0.00 35.73 1.82
3493 4113 4.699637 ACGACCTTGACAGTCAAATTGTA 58.300 39.130 16.85 0.00 35.73 2.41
3494 4114 3.541632 ACGACCTTGACAGTCAAATTGT 58.458 40.909 16.85 13.99 35.73 2.71
3495 4115 3.362986 CGACGACCTTGACAGTCAAATTG 60.363 47.826 16.85 13.42 35.73 2.32
3496 4116 2.800544 CGACGACCTTGACAGTCAAATT 59.199 45.455 16.85 6.72 35.73 1.82
3498 4118 1.406180 TCGACGACCTTGACAGTCAAA 59.594 47.619 16.85 1.86 35.73 2.69
3499 4119 1.026584 TCGACGACCTTGACAGTCAA 58.973 50.000 15.39 15.39 34.79 3.18
3500 4120 0.309922 GTCGACGACCTTGACAGTCA 59.690 55.000 17.25 0.00 33.74 3.41
3516 4162 5.050490 AGATTTTGTCATCCTATTCGGTCG 58.950 41.667 0.00 0.00 0.00 4.79
3645 4313 5.307204 AGGCACAATTAACAAATGCACAAT 58.693 33.333 0.00 0.00 38.05 2.71
3648 4316 4.990426 AGAAGGCACAATTAACAAATGCAC 59.010 37.500 0.00 0.00 38.05 4.57
3845 4513 6.099269 CCTACTAATAAAGGCTGGAGTTGGTA 59.901 42.308 0.00 0.00 0.00 3.25
4189 4863 6.833342 AATTGAAAATTGTGAACAGCTGAC 57.167 33.333 23.35 14.31 0.00 3.51
4198 4873 8.202811 TCCTGTCATCAAAATTGAAAATTGTGA 58.797 29.630 7.79 7.79 41.13 3.58
4430 5106 3.512724 CCTCTGCATGAAAATTCCAAGGT 59.487 43.478 0.00 0.00 0.00 3.50
4445 5121 0.826715 CCTCGATCCTTTCCTCTGCA 59.173 55.000 0.00 0.00 0.00 4.41
4637 5313 1.757306 CCACTGCTGGAACTCCACT 59.243 57.895 0.00 0.00 42.01 4.00
4648 5324 1.645402 AACAGGTGTTCCCCACTGCT 61.645 55.000 0.00 0.00 43.94 4.24
4779 5455 2.432628 CTCAAGGGTGACGACGGC 60.433 66.667 0.00 0.00 0.00 5.68
4780 5456 1.605058 ATCCTCAAGGGTGACGACGG 61.605 60.000 0.00 0.00 36.25 4.79
4842 5524 6.697019 GTCAATGCAACAATAGAACACACTTT 59.303 34.615 0.00 0.00 0.00 2.66
4886 5568 4.130118 CGATCCTCAGGAAAGTAAATGGG 58.870 47.826 0.00 0.00 34.34 4.00
4927 5609 2.930040 CACAAATGTGTCGGCTAGTAGG 59.070 50.000 5.38 0.00 40.96 3.18
5003 5685 3.873952 GCAAACTAATTCTCTCAGGCGAT 59.126 43.478 0.00 0.00 0.00 4.58
5034 5716 1.407437 GGGAGACCGAGGTACGAACTA 60.407 57.143 0.00 0.00 45.77 2.24
5056 5738 5.000591 TGTTTATGACTGCATTTCTTCGGA 58.999 37.500 0.00 0.00 35.94 4.55
5071 5756 8.394971 AGAGACAATTGTTCATGTGTTTATGA 57.605 30.769 13.36 0.00 35.38 2.15
5072 5757 8.908678 CAAGAGACAATTGTTCATGTGTTTATG 58.091 33.333 13.36 0.00 0.00 1.90
5073 5758 8.632679 ACAAGAGACAATTGTTCATGTGTTTAT 58.367 29.630 20.51 5.50 37.61 1.40
5122 5810 7.266400 TGCATATTGCTTCATCTTTAATTGCA 58.734 30.769 0.75 0.00 45.31 4.08
5127 5815 6.704289 AGCTGCATATTGCTTCATCTTTAA 57.296 33.333 1.02 0.00 45.31 1.52
5128 5816 7.446319 ACATAGCTGCATATTGCTTCATCTTTA 59.554 33.333 3.28 0.00 45.31 1.85
5149 5838 1.476891 ACACTCAGGTGGCGTACATAG 59.523 52.381 0.00 0.00 46.85 2.23
5161 5850 2.849942 TCACACAATTGGACACTCAGG 58.150 47.619 10.83 0.00 0.00 3.86
5170 5859 4.318689 GCGGATTTGTTTTCACACAATTGG 60.319 41.667 10.83 1.35 36.54 3.16
5225 5915 6.465751 CCATGGCTGGTAAGATTCTGGTAATA 60.466 42.308 0.00 0.00 37.79 0.98
5244 5952 2.101917 CCTTGGTTTGATGATCCATGGC 59.898 50.000 6.96 0.00 38.85 4.40
5268 5976 1.822990 CAATCTTCTGCATGGCAACCT 59.177 47.619 0.00 0.00 38.41 3.50
5269 5977 1.547372 ACAATCTTCTGCATGGCAACC 59.453 47.619 0.00 0.00 38.41 3.77
5270 5978 2.730090 CGACAATCTTCTGCATGGCAAC 60.730 50.000 0.00 0.00 38.41 4.17
5271 5979 1.469703 CGACAATCTTCTGCATGGCAA 59.530 47.619 0.00 0.00 38.41 4.52
5272 5980 1.089112 CGACAATCTTCTGCATGGCA 58.911 50.000 0.00 0.00 36.92 4.92
5291 5999 3.190878 CACCGATTGGAGCAAGCC 58.809 61.111 5.81 0.00 39.21 4.35
5302 6011 6.596309 TTATCTAAGATCTCATGCACCGAT 57.404 37.500 0.00 0.00 0.00 4.18
5307 6016 9.484806 TCAGGATATTATCTAAGATCTCATGCA 57.515 33.333 0.00 0.00 35.04 3.96
5324 6033 5.163322 CCTCAGAAGCTCTGTTCAGGATATT 60.163 44.000 11.37 0.00 44.58 1.28
5333 6042 3.900601 TCTTTCTCCTCAGAAGCTCTGTT 59.099 43.478 11.37 0.00 44.58 3.16
5391 6121 3.018856 TGAATGCTACAAGCCTCCAATG 58.981 45.455 0.00 0.00 41.51 2.82
5402 6132 2.173143 TGGCCAGATCATGAATGCTACA 59.827 45.455 0.00 0.00 0.00 2.74
5449 6180 0.884704 TTTGCTTCTCCGTGCACTCC 60.885 55.000 16.19 0.00 39.05 3.85
5538 6269 6.431234 ACAGGACTAGCAAATAAAAGGAACTG 59.569 38.462 0.00 0.00 40.86 3.16
5549 6280 7.624549 TCTTCTCAATTACAGGACTAGCAAAT 58.375 34.615 0.00 0.00 0.00 2.32
5570 6301 6.867662 TCAAAAAGAGATGTCAGGTTCTTC 57.132 37.500 0.00 0.00 0.00 2.87
5576 6307 4.580167 TGGTGTTCAAAAAGAGATGTCAGG 59.420 41.667 0.00 0.00 0.00 3.86
5581 6312 5.906073 ACCTTTGGTGTTCAAAAAGAGATG 58.094 37.500 9.40 0.00 43.88 2.90
5596 6327 1.140312 TGAGCTCTTCCACCTTTGGT 58.860 50.000 16.19 0.00 44.35 3.67
5597 6328 1.072965 AGTGAGCTCTTCCACCTTTGG 59.927 52.381 16.19 0.00 45.56 3.28
5598 6329 2.149578 CAGTGAGCTCTTCCACCTTTG 58.850 52.381 16.19 0.00 34.00 2.77
5603 6334 1.517242 CCAACAGTGAGCTCTTCCAC 58.483 55.000 16.19 5.14 0.00 4.02
5604 6335 0.397941 CCCAACAGTGAGCTCTTCCA 59.602 55.000 16.19 0.00 0.00 3.53
5605 6336 0.687354 TCCCAACAGTGAGCTCTTCC 59.313 55.000 16.19 2.86 0.00 3.46
5606 6337 2.777832 ATCCCAACAGTGAGCTCTTC 57.222 50.000 16.19 8.27 0.00 2.87
5607 6338 4.640771 TTTATCCCAACAGTGAGCTCTT 57.359 40.909 16.19 0.00 0.00 2.85
5608 6339 4.287067 TCTTTTATCCCAACAGTGAGCTCT 59.713 41.667 16.19 0.00 0.00 4.09
5609 6340 4.579869 TCTTTTATCCCAACAGTGAGCTC 58.420 43.478 6.82 6.82 0.00 4.09
5610 6341 4.640771 TCTTTTATCCCAACAGTGAGCT 57.359 40.909 0.00 0.00 0.00 4.09
5611 6342 4.762251 ACTTCTTTTATCCCAACAGTGAGC 59.238 41.667 0.00 0.00 0.00 4.26
5612 6343 5.182001 CCACTTCTTTTATCCCAACAGTGAG 59.818 44.000 0.00 0.00 33.64 3.51
5613 6344 5.070001 CCACTTCTTTTATCCCAACAGTGA 58.930 41.667 0.00 0.00 33.64 3.41
5614 6345 5.070001 TCCACTTCTTTTATCCCAACAGTG 58.930 41.667 0.00 0.00 0.00 3.66
5615 6346 5.319043 TCCACTTCTTTTATCCCAACAGT 57.681 39.130 0.00 0.00 0.00 3.55
5616 6347 5.534654 TGTTCCACTTCTTTTATCCCAACAG 59.465 40.000 0.00 0.00 0.00 3.16
5617 6348 5.450453 TGTTCCACTTCTTTTATCCCAACA 58.550 37.500 0.00 0.00 0.00 3.33
5635 6366 3.055094 TCCATCTTTCAGCTACCTGTTCC 60.055 47.826 0.00 0.00 40.09 3.62
5643 6374 2.697751 GCCTCTCTCCATCTTTCAGCTA 59.302 50.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.