Multiple sequence alignment - TraesCS7A01G104300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G104300 chr7A 100.000 3410 0 0 1 3410 63503992 63500583 0.000000e+00 6298
1 TraesCS7A01G104300 chr7A 82.882 1402 220 17 984 2373 63723856 63725249 0.000000e+00 1242
2 TraesCS7A01G104300 chr7A 96.197 710 22 4 1 707 34310357 34309650 0.000000e+00 1157
3 TraesCS7A01G104300 chr7A 93.390 711 42 3 1 707 114624853 114625562 0.000000e+00 1048
4 TraesCS7A01G104300 chr7A 81.012 1127 172 25 1254 2373 63733388 63732297 0.000000e+00 857
5 TraesCS7A01G104300 chr7D 94.219 1626 72 5 788 2411 58896740 58895135 0.000000e+00 2462
6 TraesCS7A01G104300 chr7D 84.138 1387 195 19 1005 2373 59105584 59106963 0.000000e+00 1319
7 TraesCS7A01G104300 chr7D 83.333 1380 213 14 1005 2373 59111725 59110352 0.000000e+00 1258
8 TraesCS7A01G104300 chr7D 94.737 684 33 3 25 707 563342380 563343061 0.000000e+00 1061
9 TraesCS7A01G104300 chr7D 86.472 547 68 4 1828 2373 58928857 58928316 2.270000e-166 595
10 TraesCS7A01G104300 chr7D 87.661 543 22 20 2869 3409 58894681 58894182 1.050000e-164 590
11 TraesCS7A01G104300 chr7D 81.818 253 31 8 2424 2663 58894957 58894707 7.460000e-47 198
12 TraesCS7A01G104300 chr4A 91.006 1401 95 12 1022 2408 676908771 676907388 0.000000e+00 1860
13 TraesCS7A01G104300 chr4A 83.936 1382 204 15 1005 2373 676880161 676878785 0.000000e+00 1306
14 TraesCS7A01G104300 chr4A 84.015 1370 207 11 1005 2366 676932717 676931352 0.000000e+00 1306
15 TraesCS7A01G104300 chr4A 90.821 207 13 3 3079 3285 651079647 651079447 4.340000e-69 272
16 TraesCS7A01G104300 chr4A 87.500 216 11 6 827 1037 676910623 676910419 5.690000e-58 235
17 TraesCS7A01G104300 chr4A 88.060 201 15 3 2856 3056 651079835 651079644 2.650000e-56 230
18 TraesCS7A01G104300 chr5A 97.896 713 12 2 1 710 614953104 614952392 0.000000e+00 1230
19 TraesCS7A01G104300 chr5A 97.756 713 13 2 1 710 614919784 614919072 0.000000e+00 1225
20 TraesCS7A01G104300 chr1A 98.234 623 9 1 1 621 565744667 565745289 0.000000e+00 1088
21 TraesCS7A01G104300 chr1A 93.724 717 34 4 1 707 570237395 570238110 0.000000e+00 1064
22 TraesCS7A01G104300 chr5D 94.444 684 34 4 25 707 95956906 95956226 0.000000e+00 1050
23 TraesCS7A01G104300 chr5D 87.805 287 33 2 2561 2846 458871186 458871471 5.450000e-88 335
24 TraesCS7A01G104300 chr2B 92.157 714 39 8 1 706 64953064 64953768 0.000000e+00 992
25 TraesCS7A01G104300 chr3B 89.866 523 35 12 2856 3377 743516833 743517338 0.000000e+00 656
26 TraesCS7A01G104300 chr3D 89.277 429 30 6 2856 3283 559772485 559772898 1.080000e-144 523
27 TraesCS7A01G104300 chr3D 87.847 288 31 4 2561 2846 595077017 595077302 5.450000e-88 335
28 TraesCS7A01G104300 chr3A 90.559 286 27 0 2561 2846 696015819 696016104 2.480000e-101 379
29 TraesCS7A01G104300 chr2D 89.796 294 21 3 2561 2846 617905156 617904864 5.380000e-98 368
30 TraesCS7A01G104300 chr2D 90.594 202 18 1 2862 3063 617904655 617904455 2.020000e-67 267
31 TraesCS7A01G104300 chr2D 86.726 226 23 3 3066 3291 617904427 617904209 9.450000e-61 244
32 TraesCS7A01G104300 chr7B 72.617 1238 269 58 1032 2231 2749167 2750372 9.060000e-91 344
33 TraesCS7A01G104300 chr1D 86.395 294 31 5 2561 2846 94056664 94056956 2.550000e-81 313
34 TraesCS7A01G104300 chr4B 92.063 126 7 1 3242 3364 630367191 630367316 1.260000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G104300 chr7A 63500583 63503992 3409 True 6298.000000 6298 100.000000 1 3410 1 chr7A.!!$R2 3409
1 TraesCS7A01G104300 chr7A 63723856 63725249 1393 False 1242.000000 1242 82.882000 984 2373 1 chr7A.!!$F1 1389
2 TraesCS7A01G104300 chr7A 34309650 34310357 707 True 1157.000000 1157 96.197000 1 707 1 chr7A.!!$R1 706
3 TraesCS7A01G104300 chr7A 114624853 114625562 709 False 1048.000000 1048 93.390000 1 707 1 chr7A.!!$F2 706
4 TraesCS7A01G104300 chr7A 63732297 63733388 1091 True 857.000000 857 81.012000 1254 2373 1 chr7A.!!$R3 1119
5 TraesCS7A01G104300 chr7D 59105584 59106963 1379 False 1319.000000 1319 84.138000 1005 2373 1 chr7D.!!$F1 1368
6 TraesCS7A01G104300 chr7D 59110352 59111725 1373 True 1258.000000 1258 83.333000 1005 2373 1 chr7D.!!$R2 1368
7 TraesCS7A01G104300 chr7D 58894182 58896740 2558 True 1083.333333 2462 87.899333 788 3409 3 chr7D.!!$R3 2621
8 TraesCS7A01G104300 chr7D 563342380 563343061 681 False 1061.000000 1061 94.737000 25 707 1 chr7D.!!$F2 682
9 TraesCS7A01G104300 chr7D 58928316 58928857 541 True 595.000000 595 86.472000 1828 2373 1 chr7D.!!$R1 545
10 TraesCS7A01G104300 chr4A 676878785 676880161 1376 True 1306.000000 1306 83.936000 1005 2373 1 chr4A.!!$R1 1368
11 TraesCS7A01G104300 chr4A 676931352 676932717 1365 True 1306.000000 1306 84.015000 1005 2366 1 chr4A.!!$R2 1361
12 TraesCS7A01G104300 chr4A 676907388 676910623 3235 True 1047.500000 1860 89.253000 827 2408 2 chr4A.!!$R4 1581
13 TraesCS7A01G104300 chr5A 614952392 614953104 712 True 1230.000000 1230 97.896000 1 710 1 chr5A.!!$R2 709
14 TraesCS7A01G104300 chr5A 614919072 614919784 712 True 1225.000000 1225 97.756000 1 710 1 chr5A.!!$R1 709
15 TraesCS7A01G104300 chr1A 565744667 565745289 622 False 1088.000000 1088 98.234000 1 621 1 chr1A.!!$F1 620
16 TraesCS7A01G104300 chr1A 570237395 570238110 715 False 1064.000000 1064 93.724000 1 707 1 chr1A.!!$F2 706
17 TraesCS7A01G104300 chr5D 95956226 95956906 680 True 1050.000000 1050 94.444000 25 707 1 chr5D.!!$R1 682
18 TraesCS7A01G104300 chr2B 64953064 64953768 704 False 992.000000 992 92.157000 1 706 1 chr2B.!!$F1 705
19 TraesCS7A01G104300 chr3B 743516833 743517338 505 False 656.000000 656 89.866000 2856 3377 1 chr3B.!!$F1 521
20 TraesCS7A01G104300 chr2D 617904209 617905156 947 True 293.000000 368 89.038667 2561 3291 3 chr2D.!!$R1 730
21 TraesCS7A01G104300 chr7B 2749167 2750372 1205 False 344.000000 344 72.617000 1032 2231 1 chr7B.!!$F1 1199

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 996 0.035056 CACAATCCCACTCCCACTCC 60.035 60.000 0.00 0.0 0.0 3.85 F
1563 3258 1.140589 CTGCGAGCCTCTGTTCGAT 59.859 57.895 2.99 0.0 46.7 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 4082 0.032615 AGCTCTCCGGGACATTCTCT 60.033 55.0 0.0 0.0 0.0 3.10 R
2492 4429 0.170116 CACACACAACGCCAACTTGT 59.830 50.0 0.0 0.0 31.8 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 55 0.389948 CTTCCTCGTTTAGCTGCGGT 60.390 55.000 0.00 0.00 0.00 5.68
82 86 2.629656 GCAGCACACCGAGCCAAAT 61.630 57.895 0.00 0.00 0.00 2.32
342 353 5.009854 TGCTGATCGTAATTGTCATCTGA 57.990 39.130 0.00 0.00 0.00 3.27
362 373 5.877564 TCTGACCGATTGTACATTTTATGCA 59.122 36.000 0.00 0.00 0.00 3.96
439 450 6.500751 GGAGGATAGGTTATTGGTGGATAGAA 59.499 42.308 0.00 0.00 0.00 2.10
677 688 0.901580 TCGGGTTCTAGTTTCGCCCT 60.902 55.000 0.00 0.00 37.24 5.19
678 689 0.459759 CGGGTTCTAGTTTCGCCCTC 60.460 60.000 0.00 0.00 37.24 4.30
713 724 4.329545 GACCGGCCCTGCACTTGA 62.330 66.667 0.00 0.00 0.00 3.02
714 725 3.842925 GACCGGCCCTGCACTTGAA 62.843 63.158 0.00 0.00 0.00 2.69
715 726 3.058160 CCGGCCCTGCACTTGAAG 61.058 66.667 0.00 0.00 0.00 3.02
716 727 2.032528 CGGCCCTGCACTTGAAGA 59.967 61.111 0.00 0.00 0.00 2.87
717 728 1.377725 CGGCCCTGCACTTGAAGAT 60.378 57.895 0.00 0.00 0.00 2.40
718 729 1.372087 CGGCCCTGCACTTGAAGATC 61.372 60.000 0.00 0.00 0.00 2.75
719 730 0.322816 GGCCCTGCACTTGAAGATCA 60.323 55.000 0.00 0.00 0.00 2.92
720 731 1.538047 GCCCTGCACTTGAAGATCAA 58.462 50.000 0.00 0.00 34.79 2.57
721 732 2.097825 GCCCTGCACTTGAAGATCAAT 58.902 47.619 0.00 0.00 35.59 2.57
722 733 3.282021 GCCCTGCACTTGAAGATCAATA 58.718 45.455 0.00 0.00 35.59 1.90
723 734 3.696051 GCCCTGCACTTGAAGATCAATAA 59.304 43.478 0.00 0.00 35.59 1.40
724 735 4.439289 GCCCTGCACTTGAAGATCAATAAC 60.439 45.833 0.00 0.00 35.59 1.89
725 736 4.701651 CCCTGCACTTGAAGATCAATAACA 59.298 41.667 0.00 0.00 35.59 2.41
726 737 5.359009 CCCTGCACTTGAAGATCAATAACAT 59.641 40.000 0.00 0.00 35.59 2.71
727 738 6.263344 CCTGCACTTGAAGATCAATAACATG 58.737 40.000 0.00 0.00 35.59 3.21
728 739 5.643664 TGCACTTGAAGATCAATAACATGC 58.356 37.500 0.00 0.00 35.59 4.06
729 740 5.416639 TGCACTTGAAGATCAATAACATGCT 59.583 36.000 0.00 0.00 35.59 3.79
730 741 5.970023 GCACTTGAAGATCAATAACATGCTC 59.030 40.000 0.00 0.00 35.59 4.26
731 742 6.190264 CACTTGAAGATCAATAACATGCTCG 58.810 40.000 0.00 0.00 35.59 5.03
732 743 6.036408 CACTTGAAGATCAATAACATGCTCGA 59.964 38.462 0.00 0.00 35.59 4.04
733 744 6.765036 ACTTGAAGATCAATAACATGCTCGAT 59.235 34.615 0.00 0.00 35.59 3.59
734 745 7.281774 ACTTGAAGATCAATAACATGCTCGATT 59.718 33.333 0.00 0.00 35.59 3.34
735 746 7.182361 TGAAGATCAATAACATGCTCGATTC 57.818 36.000 0.00 0.00 0.00 2.52
736 747 6.988580 TGAAGATCAATAACATGCTCGATTCT 59.011 34.615 0.00 0.00 0.00 2.40
737 748 7.496920 TGAAGATCAATAACATGCTCGATTCTT 59.503 33.333 0.00 0.00 0.00 2.52
738 749 7.798596 AGATCAATAACATGCTCGATTCTTT 57.201 32.000 0.00 0.00 0.00 2.52
739 750 7.859598 AGATCAATAACATGCTCGATTCTTTC 58.140 34.615 0.00 0.00 0.00 2.62
740 751 6.983474 TCAATAACATGCTCGATTCTTTCA 57.017 33.333 0.00 0.00 0.00 2.69
741 752 7.008440 TCAATAACATGCTCGATTCTTTCAG 57.992 36.000 0.00 0.00 0.00 3.02
742 753 5.998454 ATAACATGCTCGATTCTTTCAGG 57.002 39.130 0.00 0.00 0.00 3.86
743 754 3.340814 ACATGCTCGATTCTTTCAGGT 57.659 42.857 0.00 0.00 0.00 4.00
744 755 3.005554 ACATGCTCGATTCTTTCAGGTG 58.994 45.455 0.00 0.00 0.00 4.00
745 756 3.264947 CATGCTCGATTCTTTCAGGTGA 58.735 45.455 0.00 0.00 0.00 4.02
746 757 2.964740 TGCTCGATTCTTTCAGGTGAG 58.035 47.619 0.00 0.00 0.00 3.51
747 758 2.562738 TGCTCGATTCTTTCAGGTGAGA 59.437 45.455 0.00 0.00 0.00 3.27
748 759 3.186119 GCTCGATTCTTTCAGGTGAGAG 58.814 50.000 0.00 0.00 0.00 3.20
749 760 3.186119 CTCGATTCTTTCAGGTGAGAGC 58.814 50.000 0.00 0.00 0.00 4.09
750 761 2.093973 TCGATTCTTTCAGGTGAGAGCC 60.094 50.000 0.00 0.00 0.00 4.70
751 762 2.637947 GATTCTTTCAGGTGAGAGCCC 58.362 52.381 0.00 0.00 0.00 5.19
752 763 1.434188 TTCTTTCAGGTGAGAGCCCA 58.566 50.000 0.00 0.00 0.00 5.36
753 764 1.434188 TCTTTCAGGTGAGAGCCCAA 58.566 50.000 0.00 0.00 0.00 4.12
754 765 1.774254 TCTTTCAGGTGAGAGCCCAAA 59.226 47.619 0.00 0.00 0.00 3.28
755 766 1.882623 CTTTCAGGTGAGAGCCCAAAC 59.117 52.381 0.00 0.00 0.00 2.93
756 767 1.140312 TTCAGGTGAGAGCCCAAACT 58.860 50.000 0.00 0.00 0.00 2.66
757 768 1.140312 TCAGGTGAGAGCCCAAACTT 58.860 50.000 0.00 0.00 0.00 2.66
758 769 1.202806 TCAGGTGAGAGCCCAAACTTG 60.203 52.381 0.00 0.00 0.00 3.16
759 770 1.140312 AGGTGAGAGCCCAAACTTGA 58.860 50.000 0.00 0.00 0.00 3.02
760 771 1.494721 AGGTGAGAGCCCAAACTTGAA 59.505 47.619 0.00 0.00 0.00 2.69
761 772 2.108952 AGGTGAGAGCCCAAACTTGAAT 59.891 45.455 0.00 0.00 0.00 2.57
762 773 3.330701 AGGTGAGAGCCCAAACTTGAATA 59.669 43.478 0.00 0.00 0.00 1.75
763 774 4.018050 AGGTGAGAGCCCAAACTTGAATAT 60.018 41.667 0.00 0.00 0.00 1.28
764 775 4.336713 GGTGAGAGCCCAAACTTGAATATC 59.663 45.833 0.00 0.00 0.00 1.63
765 776 4.336713 GTGAGAGCCCAAACTTGAATATCC 59.663 45.833 0.00 0.00 0.00 2.59
766 777 4.018506 TGAGAGCCCAAACTTGAATATCCA 60.019 41.667 0.00 0.00 0.00 3.41
767 778 4.934356 AGAGCCCAAACTTGAATATCCAA 58.066 39.130 0.00 0.00 0.00 3.53
768 779 5.522641 AGAGCCCAAACTTGAATATCCAAT 58.477 37.500 0.00 0.00 0.00 3.16
769 780 6.672593 AGAGCCCAAACTTGAATATCCAATA 58.327 36.000 0.00 0.00 0.00 1.90
770 781 7.125391 AGAGCCCAAACTTGAATATCCAATAA 58.875 34.615 0.00 0.00 0.00 1.40
771 782 7.619302 AGAGCCCAAACTTGAATATCCAATAAA 59.381 33.333 0.00 0.00 0.00 1.40
772 783 7.785033 AGCCCAAACTTGAATATCCAATAAAG 58.215 34.615 0.00 0.00 0.00 1.85
773 784 7.400052 AGCCCAAACTTGAATATCCAATAAAGT 59.600 33.333 0.00 0.00 0.00 2.66
774 785 7.492344 GCCCAAACTTGAATATCCAATAAAGTG 59.508 37.037 0.00 0.00 0.00 3.16
775 786 7.981225 CCCAAACTTGAATATCCAATAAAGTGG 59.019 37.037 0.00 0.00 40.33 4.00
807 818 1.064979 AGAGCCATGCATGTGATGTGA 60.065 47.619 24.58 0.00 0.00 3.58
810 821 1.868109 GCCATGCATGTGATGTGATGC 60.868 52.381 24.58 13.57 44.42 3.91
821 832 5.712004 TGTGATGTGATGCGATTCATTTTT 58.288 33.333 0.00 0.00 35.05 1.94
822 833 6.850555 TGTGATGTGATGCGATTCATTTTTA 58.149 32.000 0.00 0.00 35.05 1.52
823 834 6.746822 TGTGATGTGATGCGATTCATTTTTAC 59.253 34.615 0.00 0.00 35.05 2.01
824 835 6.746822 GTGATGTGATGCGATTCATTTTTACA 59.253 34.615 0.00 0.00 35.05 2.41
825 836 7.433131 GTGATGTGATGCGATTCATTTTTACAT 59.567 33.333 0.00 0.00 35.05 2.29
826 837 7.644945 TGATGTGATGCGATTCATTTTTACATC 59.355 33.333 0.00 0.00 39.55 3.06
827 838 6.850555 TGTGATGCGATTCATTTTTACATCA 58.149 32.000 0.00 0.00 39.89 3.07
829 840 6.850555 TGATGCGATTCATTTTTACATCACA 58.149 32.000 0.00 0.00 37.95 3.58
830 841 6.746822 TGATGCGATTCATTTTTACATCACAC 59.253 34.615 0.00 0.00 37.95 3.82
845 856 5.113383 ACATCACACGTGAAACTTCAGTTA 58.887 37.500 25.01 0.00 43.58 2.24
872 883 0.108186 CGAAGCTGTCAGCCCATGTA 60.108 55.000 21.32 0.00 43.77 2.29
873 884 1.373570 GAAGCTGTCAGCCCATGTAC 58.626 55.000 21.32 2.05 43.77 2.90
874 885 0.391661 AAGCTGTCAGCCCATGTACG 60.392 55.000 21.32 0.00 43.77 3.67
875 886 1.079127 GCTGTCAGCCCATGTACGT 60.079 57.895 14.27 0.00 34.48 3.57
890 901 2.096980 TGTACGTACCTTGCTCGATCTG 59.903 50.000 22.43 0.00 0.00 2.90
915 926 5.840243 TCCTACAAATCATGGCATTCTTG 57.160 39.130 0.00 4.37 0.00 3.02
927 943 3.350031 ATTCTTGGCCGGAGCTGGG 62.350 63.158 5.05 0.00 39.73 4.45
978 994 0.772124 ACCACAATCCCACTCCCACT 60.772 55.000 0.00 0.00 0.00 4.00
980 996 0.035056 CACAATCCCACTCCCACTCC 60.035 60.000 0.00 0.00 0.00 3.85
1277 2960 2.367202 GGACCAGCATTCCCGAGGA 61.367 63.158 0.00 0.00 0.00 3.71
1563 3258 1.140589 CTGCGAGCCTCTGTTCGAT 59.859 57.895 2.99 0.00 46.70 3.59
2310 4082 3.000819 CGGCTGGTGGAGGTGGTA 61.001 66.667 0.00 0.00 0.00 3.25
2365 4137 2.783288 GCCGGGAGTCTAGGGTTCG 61.783 68.421 2.18 0.00 0.00 3.95
2366 4138 2.783288 CCGGGAGTCTAGGGTTCGC 61.783 68.421 0.00 0.00 0.00 4.70
2367 4139 2.050350 CGGGAGTCTAGGGTTCGCA 61.050 63.158 0.00 0.00 0.00 5.10
2368 4140 1.817209 GGGAGTCTAGGGTTCGCAG 59.183 63.158 0.00 0.00 0.00 5.18
2369 4141 0.683504 GGGAGTCTAGGGTTCGCAGA 60.684 60.000 0.00 0.00 0.00 4.26
2370 4142 0.456628 GGAGTCTAGGGTTCGCAGAC 59.543 60.000 0.00 0.00 39.19 3.51
2422 4200 2.910479 TGTGAGGTCGCTCCACGT 60.910 61.111 0.00 0.00 44.19 4.49
2463 4400 4.021925 GAGGGCCGAGCTGTTGGT 62.022 66.667 0.00 0.00 0.00 3.67
2464 4401 2.606519 AGGGCCGAGCTGTTGGTA 60.607 61.111 0.00 0.00 0.00 3.25
2470 4407 1.679032 GCCGAGCTGTTGGTAAAGGAT 60.679 52.381 0.00 0.00 0.00 3.24
2471 4408 2.280628 CCGAGCTGTTGGTAAAGGATC 58.719 52.381 0.00 0.00 0.00 3.36
2472 4409 1.927174 CGAGCTGTTGGTAAAGGATCG 59.073 52.381 0.00 0.00 0.00 3.69
2473 4410 2.674177 CGAGCTGTTGGTAAAGGATCGT 60.674 50.000 0.00 0.00 0.00 3.73
2474 4411 3.428452 CGAGCTGTTGGTAAAGGATCGTA 60.428 47.826 0.00 0.00 0.00 3.43
2476 4413 3.514309 AGCTGTTGGTAAAGGATCGTAGT 59.486 43.478 0.00 0.00 0.00 2.73
2478 4415 4.619863 GCTGTTGGTAAAGGATCGTAGTGA 60.620 45.833 0.00 0.00 0.00 3.41
2480 4417 4.525487 TGTTGGTAAAGGATCGTAGTGAGT 59.475 41.667 0.00 0.00 0.00 3.41
2481 4418 4.713824 TGGTAAAGGATCGTAGTGAGTG 57.286 45.455 0.00 0.00 0.00 3.51
2482 4419 4.084287 TGGTAAAGGATCGTAGTGAGTGT 58.916 43.478 0.00 0.00 0.00 3.55
2483 4420 5.255687 TGGTAAAGGATCGTAGTGAGTGTA 58.744 41.667 0.00 0.00 0.00 2.90
2484 4421 5.124457 TGGTAAAGGATCGTAGTGAGTGTAC 59.876 44.000 0.00 0.00 0.00 2.90
2487 4424 1.268437 GGATCGTAGTGAGTGTACGCC 60.268 57.143 1.98 0.00 42.42 5.68
2489 4426 0.606130 TCGTAGTGAGTGTACGCCCA 60.606 55.000 1.98 0.00 42.42 5.36
2490 4427 0.179171 CGTAGTGAGTGTACGCCCAG 60.179 60.000 1.98 0.00 37.10 4.45
2492 4429 2.086869 GTAGTGAGTGTACGCCCAGTA 58.913 52.381 1.98 1.81 0.00 2.74
2500 4437 3.919163 TACGCCCAGTACAAGTTGG 57.081 52.632 7.96 0.00 0.00 3.77
2502 4439 3.263941 GCCCAGTACAAGTTGGCG 58.736 61.111 7.96 0.00 32.98 5.69
2504 4441 1.170290 GCCCAGTACAAGTTGGCGTT 61.170 55.000 7.96 0.00 32.98 4.84
2519 4456 1.460542 GCGTTGTGTGTGTTCGTTGC 61.461 55.000 0.00 0.00 0.00 4.17
2525 4462 0.660488 TGTGTGTTCGTTGCATGGAC 59.340 50.000 0.00 0.00 0.00 4.02
2541 4486 2.217750 TGGACAACTGGAACATGTTCG 58.782 47.619 27.69 19.07 40.37 3.95
2578 4523 4.054780 TGGAACTTGTATACGATCAGGC 57.945 45.455 0.00 0.00 0.00 4.85
2762 4710 3.259123 ACACCAAAATCAAGCCATTCTCC 59.741 43.478 0.00 0.00 0.00 3.71
2763 4711 3.258872 CACCAAAATCAAGCCATTCTCCA 59.741 43.478 0.00 0.00 0.00 3.86
2764 4712 4.081309 CACCAAAATCAAGCCATTCTCCAT 60.081 41.667 0.00 0.00 0.00 3.41
2766 4714 5.361857 ACCAAAATCAAGCCATTCTCCATAG 59.638 40.000 0.00 0.00 0.00 2.23
2822 4777 3.121030 GCGCCACTGACATCGCTT 61.121 61.111 0.00 0.00 43.70 4.68
2823 4778 3.084579 CGCCACTGACATCGCTTC 58.915 61.111 0.00 0.00 0.00 3.86
2824 4779 1.446792 CGCCACTGACATCGCTTCT 60.447 57.895 0.00 0.00 0.00 2.85
2836 4791 0.036732 TCGCTTCTTCAACCATGCCT 59.963 50.000 0.00 0.00 0.00 4.75
2846 4801 1.495579 AACCATGCCTGAGCCTCACT 61.496 55.000 0.00 0.00 38.69 3.41
2847 4802 0.618680 ACCATGCCTGAGCCTCACTA 60.619 55.000 0.00 0.00 38.69 2.74
2848 4803 0.543277 CCATGCCTGAGCCTCACTAA 59.457 55.000 0.00 0.00 38.69 2.24
2849 4804 1.142465 CCATGCCTGAGCCTCACTAAT 59.858 52.381 0.00 0.00 38.69 1.73
2850 4805 2.492012 CATGCCTGAGCCTCACTAATC 58.508 52.381 0.00 0.00 38.69 1.75
2851 4806 1.871418 TGCCTGAGCCTCACTAATCT 58.129 50.000 0.00 0.00 38.69 2.40
2852 4807 1.483827 TGCCTGAGCCTCACTAATCTG 59.516 52.381 0.00 0.00 38.69 2.90
2853 4808 1.759445 GCCTGAGCCTCACTAATCTGA 59.241 52.381 0.00 0.00 0.00 3.27
2854 4809 2.368221 GCCTGAGCCTCACTAATCTGAT 59.632 50.000 0.00 0.00 0.00 2.90
2859 5007 2.104451 AGCCTCACTAATCTGATGCTGG 59.896 50.000 0.00 0.00 39.74 4.85
2860 5008 2.158842 GCCTCACTAATCTGATGCTGGT 60.159 50.000 0.00 0.00 31.21 4.00
2870 5018 1.225426 GATGCTGGTGATCTGGCCA 59.775 57.895 4.71 4.71 0.00 5.36
2976 5124 2.662006 TGATGCTTTCTCTCGTCCAG 57.338 50.000 0.00 0.00 0.00 3.86
3039 5187 4.944962 TCTTTGCTTGTACATCCAATCG 57.055 40.909 0.00 0.00 0.00 3.34
3063 5211 4.035324 ACTCTTCTCGGATGTACGTGTATG 59.965 45.833 0.00 0.00 34.94 2.39
3064 5212 3.943381 TCTTCTCGGATGTACGTGTATGT 59.057 43.478 0.00 0.00 34.94 2.29
3075 5248 7.436970 GGATGTACGTGTATGTGTATTCATCAA 59.563 37.037 0.00 0.00 32.47 2.57
3148 5321 6.725834 TCTTTTTGGGCATATTTCTTCTTCCT 59.274 34.615 0.00 0.00 0.00 3.36
3152 5325 4.228210 TGGGCATATTTCTTCTTCCTGACT 59.772 41.667 0.00 0.00 0.00 3.41
3161 5334 3.711704 TCTTCTTCCTGACTTGTCAAGGT 59.288 43.478 16.85 2.75 0.00 3.50
3185 5358 3.421352 TGTTATTGCGACGTAAACACG 57.579 42.857 1.63 0.00 39.31 4.49
3186 5359 2.155347 TGTTATTGCGACGTAAACACGG 59.845 45.455 1.63 0.00 37.45 4.94
3260 5433 5.362556 ACACTTAGATGATGTTGTTGTGC 57.637 39.130 0.00 0.00 0.00 4.57
3409 5583 3.925090 CCCTAACCCTAGGCGCCG 61.925 72.222 23.20 9.47 43.25 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 55 3.673484 GCTGCTGCTTTTCGGCCA 61.673 61.111 8.53 0.00 46.56 5.36
82 86 7.076983 CGCCGTTTTATTTTACTTTGTTAGGA 58.923 34.615 0.00 0.00 0.00 2.94
342 353 6.096141 TCCATTGCATAAAATGTACAATCGGT 59.904 34.615 0.00 0.00 36.06 4.69
362 373 3.763360 TGACGGCATGAGAAAATTCCATT 59.237 39.130 0.00 0.00 0.00 3.16
439 450 6.777580 CCATATATTAGGTGGGCAAGAAGTTT 59.222 38.462 0.00 0.00 0.00 2.66
707 718 6.036408 TCGAGCATGTTATTGATCTTCAAGTG 59.964 38.462 0.00 0.00 40.05 3.16
708 719 6.108687 TCGAGCATGTTATTGATCTTCAAGT 58.891 36.000 0.00 0.00 40.05 3.16
709 720 6.594284 TCGAGCATGTTATTGATCTTCAAG 57.406 37.500 0.00 0.00 40.05 3.02
710 721 7.496920 AGAATCGAGCATGTTATTGATCTTCAA 59.503 33.333 0.00 0.00 41.09 2.69
711 722 6.988580 AGAATCGAGCATGTTATTGATCTTCA 59.011 34.615 0.00 0.00 29.89 3.02
712 723 7.418840 AGAATCGAGCATGTTATTGATCTTC 57.581 36.000 0.00 0.00 29.89 2.87
713 724 7.798596 AAGAATCGAGCATGTTATTGATCTT 57.201 32.000 0.00 0.00 29.89 2.40
714 725 7.496920 TGAAAGAATCGAGCATGTTATTGATCT 59.503 33.333 0.00 0.00 29.89 2.75
715 726 7.633621 TGAAAGAATCGAGCATGTTATTGATC 58.366 34.615 0.00 0.00 0.00 2.92
716 727 7.255035 CCTGAAAGAATCGAGCATGTTATTGAT 60.255 37.037 0.00 0.00 34.07 2.57
717 728 6.037500 CCTGAAAGAATCGAGCATGTTATTGA 59.962 38.462 0.00 0.00 34.07 2.57
718 729 6.183360 ACCTGAAAGAATCGAGCATGTTATTG 60.183 38.462 0.00 0.00 34.07 1.90
719 730 5.882557 ACCTGAAAGAATCGAGCATGTTATT 59.117 36.000 0.00 0.00 34.07 1.40
720 731 5.295292 CACCTGAAAGAATCGAGCATGTTAT 59.705 40.000 0.00 0.00 34.07 1.89
721 732 4.631377 CACCTGAAAGAATCGAGCATGTTA 59.369 41.667 0.00 0.00 34.07 2.41
722 733 3.438087 CACCTGAAAGAATCGAGCATGTT 59.562 43.478 0.00 0.00 34.07 2.71
723 734 3.005554 CACCTGAAAGAATCGAGCATGT 58.994 45.455 0.00 0.00 34.07 3.21
724 735 3.264947 TCACCTGAAAGAATCGAGCATG 58.735 45.455 0.00 0.00 34.07 4.06
725 736 3.196469 TCTCACCTGAAAGAATCGAGCAT 59.804 43.478 0.00 0.00 34.07 3.79
726 737 2.562738 TCTCACCTGAAAGAATCGAGCA 59.437 45.455 0.00 0.00 34.07 4.26
727 738 3.186119 CTCTCACCTGAAAGAATCGAGC 58.814 50.000 0.00 0.00 34.07 5.03
728 739 3.186119 GCTCTCACCTGAAAGAATCGAG 58.814 50.000 0.00 0.00 34.07 4.04
729 740 2.093973 GGCTCTCACCTGAAAGAATCGA 60.094 50.000 0.00 0.00 34.07 3.59
730 741 2.275318 GGCTCTCACCTGAAAGAATCG 58.725 52.381 0.00 0.00 34.07 3.34
731 742 2.026822 TGGGCTCTCACCTGAAAGAATC 60.027 50.000 0.00 0.00 34.07 2.52
732 743 1.988107 TGGGCTCTCACCTGAAAGAAT 59.012 47.619 0.00 0.00 34.07 2.40
733 744 1.434188 TGGGCTCTCACCTGAAAGAA 58.566 50.000 0.00 0.00 34.07 2.52
734 745 1.434188 TTGGGCTCTCACCTGAAAGA 58.566 50.000 0.00 0.00 34.07 2.52
735 746 1.882623 GTTTGGGCTCTCACCTGAAAG 59.117 52.381 0.00 0.00 0.00 2.62
736 747 1.494721 AGTTTGGGCTCTCACCTGAAA 59.505 47.619 0.00 0.00 0.00 2.69
737 748 1.140312 AGTTTGGGCTCTCACCTGAA 58.860 50.000 0.00 0.00 0.00 3.02
738 749 1.140312 AAGTTTGGGCTCTCACCTGA 58.860 50.000 0.00 0.00 0.00 3.86
739 750 1.202806 TCAAGTTTGGGCTCTCACCTG 60.203 52.381 0.00 0.00 0.00 4.00
740 751 1.140312 TCAAGTTTGGGCTCTCACCT 58.860 50.000 0.00 0.00 0.00 4.00
741 752 1.981256 TTCAAGTTTGGGCTCTCACC 58.019 50.000 0.00 0.00 0.00 4.02
742 753 4.336713 GGATATTCAAGTTTGGGCTCTCAC 59.663 45.833 0.00 0.00 0.00 3.51
743 754 4.018506 TGGATATTCAAGTTTGGGCTCTCA 60.019 41.667 0.00 0.00 0.00 3.27
744 755 4.526970 TGGATATTCAAGTTTGGGCTCTC 58.473 43.478 0.00 0.00 0.00 3.20
745 756 4.591321 TGGATATTCAAGTTTGGGCTCT 57.409 40.909 0.00 0.00 0.00 4.09
746 757 5.859205 ATTGGATATTCAAGTTTGGGCTC 57.141 39.130 2.23 0.00 0.00 4.70
747 758 7.400052 ACTTTATTGGATATTCAAGTTTGGGCT 59.600 33.333 2.23 0.00 0.00 5.19
748 759 7.492344 CACTTTATTGGATATTCAAGTTTGGGC 59.508 37.037 2.23 0.00 0.00 5.36
749 760 7.981225 CCACTTTATTGGATATTCAAGTTTGGG 59.019 37.037 2.23 0.00 39.24 4.12
750 761 8.748412 TCCACTTTATTGGATATTCAAGTTTGG 58.252 33.333 2.23 4.81 41.00 3.28
751 762 9.793252 CTCCACTTTATTGGATATTCAAGTTTG 57.207 33.333 2.23 0.00 44.97 2.93
752 763 9.533831 ACTCCACTTTATTGGATATTCAAGTTT 57.466 29.630 2.23 0.00 44.97 2.66
754 765 9.614792 GTACTCCACTTTATTGGATATTCAAGT 57.385 33.333 2.23 0.00 44.97 3.16
755 766 9.613428 TGTACTCCACTTTATTGGATATTCAAG 57.387 33.333 2.23 0.00 44.97 3.02
756 767 9.391006 GTGTACTCCACTTTATTGGATATTCAA 57.609 33.333 0.00 0.00 44.97 2.69
757 768 8.958119 GTGTACTCCACTTTATTGGATATTCA 57.042 34.615 0.00 0.00 44.97 2.57
772 783 2.037251 TGGCTCTTCAAGTGTACTCCAC 59.963 50.000 0.00 0.00 44.89 4.02
773 784 2.325484 TGGCTCTTCAAGTGTACTCCA 58.675 47.619 0.00 0.00 0.00 3.86
774 785 3.265791 CATGGCTCTTCAAGTGTACTCC 58.734 50.000 0.00 0.00 0.00 3.85
775 786 2.675348 GCATGGCTCTTCAAGTGTACTC 59.325 50.000 0.00 0.00 0.00 2.59
776 787 2.038952 TGCATGGCTCTTCAAGTGTACT 59.961 45.455 0.00 0.00 0.00 2.73
777 788 2.426522 TGCATGGCTCTTCAAGTGTAC 58.573 47.619 0.00 0.00 0.00 2.90
778 789 2.857186 TGCATGGCTCTTCAAGTGTA 57.143 45.000 0.00 0.00 0.00 2.90
779 790 1.816835 CATGCATGGCTCTTCAAGTGT 59.183 47.619 19.40 0.00 0.00 3.55
780 791 1.816835 ACATGCATGGCTCTTCAAGTG 59.183 47.619 29.41 2.46 0.00 3.16
781 792 1.816835 CACATGCATGGCTCTTCAAGT 59.183 47.619 29.41 2.39 0.00 3.16
782 793 2.089201 TCACATGCATGGCTCTTCAAG 58.911 47.619 29.41 8.43 0.00 3.02
783 794 2.203470 TCACATGCATGGCTCTTCAA 57.797 45.000 29.41 3.89 0.00 2.69
784 795 2.021457 CATCACATGCATGGCTCTTCA 58.979 47.619 29.41 6.31 0.00 3.02
785 796 2.022195 ACATCACATGCATGGCTCTTC 58.978 47.619 29.41 0.00 0.00 2.87
786 797 1.749063 CACATCACATGCATGGCTCTT 59.251 47.619 29.41 6.27 0.00 2.85
807 818 5.738693 CGTGTGATGTAAAAATGAATCGCAT 59.261 36.000 0.00 0.00 40.51 4.73
810 821 6.303370 TCACGTGTGATGTAAAAATGAATCG 58.697 36.000 16.51 0.00 34.14 3.34
821 832 4.689071 ACTGAAGTTTCACGTGTGATGTA 58.311 39.130 16.51 0.00 39.64 2.29
822 833 3.531538 ACTGAAGTTTCACGTGTGATGT 58.468 40.909 16.51 0.00 39.64 3.06
823 834 4.536364 AACTGAAGTTTCACGTGTGATG 57.464 40.909 16.51 2.05 39.64 3.07
824 835 5.357257 AGTAACTGAAGTTTCACGTGTGAT 58.643 37.500 16.51 0.00 39.64 3.06
825 836 4.751060 AGTAACTGAAGTTTCACGTGTGA 58.249 39.130 16.51 2.64 39.31 3.58
826 837 5.464965 AAGTAACTGAAGTTTCACGTGTG 57.535 39.130 16.51 0.00 39.31 3.82
827 838 7.599630 TTAAAGTAACTGAAGTTTCACGTGT 57.400 32.000 16.51 0.00 39.31 4.49
828 839 7.526186 CGATTAAAGTAACTGAAGTTTCACGTG 59.474 37.037 9.94 9.94 39.31 4.49
829 840 7.436080 TCGATTAAAGTAACTGAAGTTTCACGT 59.564 33.333 0.21 0.00 39.31 4.49
830 841 7.780313 TCGATTAAAGTAACTGAAGTTTCACG 58.220 34.615 0.21 0.00 39.31 4.35
845 856 3.003480 GGCTGACAGCTTCGATTAAAGT 58.997 45.455 25.92 0.00 41.99 2.66
872 883 0.179134 GCAGATCGAGCAAGGTACGT 60.179 55.000 2.38 0.00 0.00 3.57
873 884 0.101399 AGCAGATCGAGCAAGGTACG 59.899 55.000 2.38 0.00 0.00 3.67
874 885 2.197577 GAAGCAGATCGAGCAAGGTAC 58.802 52.381 2.38 0.00 0.00 3.34
875 886 1.137086 GGAAGCAGATCGAGCAAGGTA 59.863 52.381 2.38 0.00 0.00 3.08
890 901 4.340381 AGAATGCCATGATTTGTAGGAAGC 59.660 41.667 0.00 0.00 0.00 3.86
915 926 3.081409 TTCTACCCAGCTCCGGCC 61.081 66.667 0.00 0.00 39.73 6.13
927 943 3.426963 CGACTTCTCTGTGGCTCTTCTAC 60.427 52.174 0.00 0.00 0.00 2.59
1208 2891 1.134371 GGAAGAAGCGGCAGAGGTATT 60.134 52.381 1.45 0.00 0.00 1.89
1563 3258 1.967535 CGGGCTGAACAGAGACTGA 59.032 57.895 5.97 0.00 35.18 3.41
1725 3423 4.406173 CTGACTGTCGACGCCGCT 62.406 66.667 11.62 0.00 35.37 5.52
1999 3739 1.354040 CTGTCCTTCGTCATCACAGC 58.646 55.000 0.00 0.00 0.00 4.40
2001 3741 1.338107 ACCTGTCCTTCGTCATCACA 58.662 50.000 0.00 0.00 0.00 3.58
2247 4019 4.838152 CACGACCCATCCCCGCTG 62.838 72.222 0.00 0.00 0.00 5.18
2310 4082 0.032615 AGCTCTCCGGGACATTCTCT 60.033 55.000 0.00 0.00 0.00 3.10
2422 4200 4.451150 GCCATGGTCCGTGCGAGA 62.451 66.667 14.67 0.00 0.00 4.04
2431 4368 1.450312 CCTCGTCCTTGCCATGGTC 60.450 63.158 14.67 6.41 0.00 4.02
2434 4371 2.825836 GCCCTCGTCCTTGCCATG 60.826 66.667 0.00 0.00 0.00 3.66
2462 4399 5.261661 CGTACACTCACTACGATCCTTTAC 58.738 45.833 0.00 0.00 39.50 2.01
2463 4400 4.201851 GCGTACACTCACTACGATCCTTTA 60.202 45.833 2.28 0.00 39.50 1.85
2464 4401 3.427233 GCGTACACTCACTACGATCCTTT 60.427 47.826 2.28 0.00 39.50 3.11
2470 4407 0.606130 TGGGCGTACACTCACTACGA 60.606 55.000 2.28 0.00 39.50 3.43
2471 4408 0.179171 CTGGGCGTACACTCACTACG 60.179 60.000 0.00 0.00 40.00 3.51
2472 4409 0.886563 ACTGGGCGTACACTCACTAC 59.113 55.000 0.00 0.00 0.00 2.73
2473 4410 2.086869 GTACTGGGCGTACACTCACTA 58.913 52.381 0.00 0.00 46.21 2.74
2474 4411 0.886563 GTACTGGGCGTACACTCACT 59.113 55.000 0.00 0.00 46.21 3.41
2481 4418 1.435577 CCAACTTGTACTGGGCGTAC 58.564 55.000 0.00 0.00 46.94 3.67
2482 4419 0.320946 GCCAACTTGTACTGGGCGTA 60.321 55.000 1.45 0.00 34.56 4.42
2483 4420 1.599797 GCCAACTTGTACTGGGCGT 60.600 57.895 1.45 0.00 34.56 5.68
2484 4421 3.263941 GCCAACTTGTACTGGGCG 58.736 61.111 1.45 0.00 34.56 6.13
2487 4424 1.002900 CACAACGCCAACTTGTACTGG 60.003 52.381 0.00 0.00 35.67 4.00
2489 4426 1.668751 CACACAACGCCAACTTGTACT 59.331 47.619 0.00 0.00 30.48 2.73
2490 4427 1.399089 ACACACAACGCCAACTTGTAC 59.601 47.619 0.00 0.00 30.48 2.90
2492 4429 0.170116 CACACACAACGCCAACTTGT 59.830 50.000 0.00 0.00 31.80 3.16
2493 4430 0.170116 ACACACACAACGCCAACTTG 59.830 50.000 0.00 0.00 0.00 3.16
2494 4431 0.885196 AACACACACAACGCCAACTT 59.115 45.000 0.00 0.00 0.00 2.66
2495 4432 0.450184 GAACACACACAACGCCAACT 59.550 50.000 0.00 0.00 0.00 3.16
2496 4433 0.859788 CGAACACACACAACGCCAAC 60.860 55.000 0.00 0.00 0.00 3.77
2497 4434 1.299562 ACGAACACACACAACGCCAA 61.300 50.000 0.00 0.00 0.00 4.52
2499 4436 0.859788 CAACGAACACACACAACGCC 60.860 55.000 0.00 0.00 0.00 5.68
2500 4437 1.460542 GCAACGAACACACACAACGC 61.461 55.000 0.00 0.00 0.00 4.84
2502 4439 1.845568 CATGCAACGAACACACACAAC 59.154 47.619 0.00 0.00 0.00 3.32
2504 4441 0.380024 CCATGCAACGAACACACACA 59.620 50.000 0.00 0.00 0.00 3.72
2519 4456 3.365264 CGAACATGTTCCAGTTGTCCATG 60.365 47.826 28.40 9.58 39.00 3.66
2525 4462 0.586319 ACGCGAACATGTTCCAGTTG 59.414 50.000 28.40 17.06 36.27 3.16
2578 4523 0.880278 CGTACCATCGCATCCCAAGG 60.880 60.000 0.00 0.00 0.00 3.61
2743 4691 4.748277 ATGGAGAATGGCTTGATTTTGG 57.252 40.909 0.00 0.00 0.00 3.28
2762 4710 1.068753 CACTCCGGCTGCTCCTATG 59.931 63.158 0.00 0.00 0.00 2.23
2763 4711 2.801631 GCACTCCGGCTGCTCCTAT 61.802 63.158 14.83 0.00 0.00 2.57
2764 4712 3.461773 GCACTCCGGCTGCTCCTA 61.462 66.667 14.83 0.00 0.00 2.94
2766 4714 4.479993 ATGCACTCCGGCTGCTCC 62.480 66.667 20.66 0.00 35.53 4.70
2810 4765 2.224281 TGGTTGAAGAAGCGATGTCAGT 60.224 45.455 0.00 0.00 31.82 3.41
2816 4771 1.098050 GGCATGGTTGAAGAAGCGAT 58.902 50.000 0.00 0.00 31.82 4.58
2822 4777 0.322816 GGCTCAGGCATGGTTGAAGA 60.323 55.000 0.00 0.00 40.87 2.87
2823 4778 0.323178 AGGCTCAGGCATGGTTGAAG 60.323 55.000 0.00 0.00 40.87 3.02
2824 4779 0.322816 GAGGCTCAGGCATGGTTGAA 60.323 55.000 10.25 0.00 40.87 2.69
2846 4801 3.495629 GCCAGATCACCAGCATCAGATTA 60.496 47.826 0.00 0.00 0.00 1.75
2847 4802 2.748798 GCCAGATCACCAGCATCAGATT 60.749 50.000 0.00 0.00 0.00 2.40
2848 4803 1.202782 GCCAGATCACCAGCATCAGAT 60.203 52.381 0.00 0.00 0.00 2.90
2849 4804 0.179702 GCCAGATCACCAGCATCAGA 59.820 55.000 0.00 0.00 0.00 3.27
2850 4805 0.818445 GGCCAGATCACCAGCATCAG 60.818 60.000 0.00 0.00 0.00 2.90
2851 4806 1.225426 GGCCAGATCACCAGCATCA 59.775 57.895 0.00 0.00 0.00 3.07
2852 4807 1.099879 GTGGCCAGATCACCAGCATC 61.100 60.000 5.11 0.00 36.38 3.91
2853 4808 1.077212 GTGGCCAGATCACCAGCAT 60.077 57.895 5.11 0.00 36.38 3.79
2854 4809 2.352422 GTGGCCAGATCACCAGCA 59.648 61.111 5.11 0.00 36.38 4.41
2976 5124 4.754322 AGTGAACAACAAAAACATGGGAC 58.246 39.130 0.00 0.00 0.00 4.46
3039 5187 2.419324 ACACGTACATCCGAGAAGAGTC 59.581 50.000 0.00 0.00 0.00 3.36
3133 5306 7.912056 TGACAAGTCAGGAAGAAGAAATATG 57.088 36.000 0.00 0.00 34.14 1.78
3148 5321 6.559810 CAATAACAACAACCTTGACAAGTCA 58.440 36.000 14.03 0.00 37.91 3.41
3152 5325 4.096532 TCGCAATAACAACAACCTTGACAA 59.903 37.500 0.00 0.00 0.00 3.18
3161 5334 4.962751 GTGTTTACGTCGCAATAACAACAA 59.037 37.500 0.00 0.00 31.29 2.83
3202 5375 6.959639 AAGATCTTCTTTGGCTACAACAAA 57.040 33.333 0.88 0.00 31.57 2.83
3203 5376 6.959639 AAAGATCTTCTTTGGCTACAACAA 57.040 33.333 8.78 0.00 44.34 2.83
3204 5377 6.959639 AAAAGATCTTCTTTGGCTACAACA 57.040 33.333 8.78 0.00 45.19 3.33
3260 5433 7.547370 TGTTTTCAAAACCTGGAAATTGTACTG 59.453 33.333 10.56 0.00 34.91 2.74
3329 5503 8.722480 TGTACTGAATCCATTATCAAGAACAG 57.278 34.615 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.