Multiple sequence alignment - TraesCS7A01G103800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G103800 chr7A 100.000 2526 0 0 1 2526 63399748 63397223 0.000000e+00 4665.0
1 TraesCS7A01G103800 chr7A 88.000 1300 99 35 734 2003 63427839 63426567 0.000000e+00 1483.0
2 TraesCS7A01G103800 chr7A 95.574 836 28 7 1344 2170 63356057 63356892 0.000000e+00 1330.0
3 TraesCS7A01G103800 chr7A 94.309 615 21 8 734 1348 63343450 63344050 0.000000e+00 929.0
4 TraesCS7A01G103800 chr7A 99.183 367 2 1 2161 2526 63357129 63357495 0.000000e+00 660.0
5 TraesCS7A01G103800 chr7A 89.320 103 10 1 1 102 63335456 63335558 7.330000e-26 128.0
6 TraesCS7A01G103800 chr5B 87.699 1317 116 26 734 2025 339101191 339099896 0.000000e+00 1493.0
7 TraesCS7A01G103800 chr5B 95.000 260 12 1 2267 2526 339099278 339099020 8.410000e-110 407.0
8 TraesCS7A01G103800 chr5B 84.034 238 28 8 390 626 585838538 585838310 1.180000e-53 220.0
9 TraesCS7A01G103800 chr5B 76.489 319 47 22 397 708 530646853 530646556 5.630000e-32 148.0
10 TraesCS7A01G103800 chr5B 89.024 82 9 0 1 82 339151213 339151132 4.450000e-18 102.0
11 TraesCS7A01G103800 chr5D 85.070 1286 118 42 942 2169 298123720 298124989 0.000000e+00 1243.0
12 TraesCS7A01G103800 chr5D 95.385 260 11 1 2267 2526 298125348 298125606 1.810000e-111 412.0
13 TraesCS7A01G103800 chr5D 84.549 233 32 3 394 626 478225669 478225441 7.030000e-56 228.0
14 TraesCS7A01G103800 chr5D 82.759 232 31 8 404 629 24133555 24133327 5.510000e-47 198.0
15 TraesCS7A01G103800 chr7D 89.934 914 62 15 734 1634 58863887 58862991 0.000000e+00 1151.0
16 TraesCS7A01G103800 chr7D 86.145 996 95 20 1008 1974 58793630 58794611 0.000000e+00 1035.0
17 TraesCS7A01G103800 chr7D 88.307 573 43 13 999 1550 71812577 71813146 0.000000e+00 665.0
18 TraesCS7A01G103800 chr7D 82.927 246 33 8 391 632 169997634 169997874 1.970000e-51 213.0
19 TraesCS7A01G103800 chr7D 81.159 138 16 7 2363 2499 58824508 58824636 4.450000e-18 102.0
20 TraesCS7A01G103800 chr7D 79.562 137 22 6 2363 2498 58849165 58849034 2.680000e-15 93.5
21 TraesCS7A01G103800 chrUn 88.301 718 68 12 1104 1808 467638637 467639351 0.000000e+00 846.0
22 TraesCS7A01G103800 chrUn 100.000 392 0 0 1779 2170 479691690 479691299 0.000000e+00 725.0
23 TraesCS7A01G103800 chrUn 85.385 260 24 12 850 1102 468331541 468331793 8.970000e-65 257.0
24 TraesCS7A01G103800 chr7B 81.685 1021 112 46 840 1809 63934815 63935811 0.000000e+00 780.0
25 TraesCS7A01G103800 chr2B 86.598 291 29 6 391 678 690720335 690720052 1.890000e-81 313.0
26 TraesCS7A01G103800 chr6A 82.274 299 28 16 212 502 149827185 149827466 4.200000e-58 235.0
27 TraesCS7A01G103800 chr6A 84.416 231 27 7 394 620 60653535 60653310 4.230000e-53 219.0
28 TraesCS7A01G103800 chr3B 82.439 205 22 11 401 601 766888773 766888579 1.550000e-37 167.0
29 TraesCS7A01G103800 chr3D 77.597 308 44 19 384 675 591037229 591037527 2.010000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G103800 chr7A 63397223 63399748 2525 True 4665.0 4665 100.0000 1 2526 1 chr7A.!!$R1 2525
1 TraesCS7A01G103800 chr7A 63426567 63427839 1272 True 1483.0 1483 88.0000 734 2003 1 chr7A.!!$R2 1269
2 TraesCS7A01G103800 chr7A 63356057 63357495 1438 False 995.0 1330 97.3785 1344 2526 2 chr7A.!!$F3 1182
3 TraesCS7A01G103800 chr7A 63343450 63344050 600 False 929.0 929 94.3090 734 1348 1 chr7A.!!$F2 614
4 TraesCS7A01G103800 chr5B 339099020 339101191 2171 True 950.0 1493 91.3495 734 2526 2 chr5B.!!$R4 1792
5 TraesCS7A01G103800 chr5D 298123720 298125606 1886 False 827.5 1243 90.2275 942 2526 2 chr5D.!!$F1 1584
6 TraesCS7A01G103800 chr7D 58862991 58863887 896 True 1151.0 1151 89.9340 734 1634 1 chr7D.!!$R2 900
7 TraesCS7A01G103800 chr7D 58793630 58794611 981 False 1035.0 1035 86.1450 1008 1974 1 chr7D.!!$F1 966
8 TraesCS7A01G103800 chr7D 71812577 71813146 569 False 665.0 665 88.3070 999 1550 1 chr7D.!!$F3 551
9 TraesCS7A01G103800 chrUn 467638637 467639351 714 False 846.0 846 88.3010 1104 1808 1 chrUn.!!$F1 704
10 TraesCS7A01G103800 chr7B 63934815 63935811 996 False 780.0 780 81.6850 840 1809 1 chr7B.!!$F1 969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
737 738 0.036388 TCAACGAGCTTCCATCCCAC 60.036 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2694 2.092429 GGCCTTCACCTTGTGATATCCA 60.092 50.0 0.0 0.0 42.4 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.868757 TGACGGAATAACTCACTGAGG 57.131 47.619 10.86 0.00 33.35 3.86
24 25 3.427573 TGACGGAATAACTCACTGAGGA 58.572 45.455 10.86 0.00 33.35 3.71
25 26 4.023980 TGACGGAATAACTCACTGAGGAT 58.976 43.478 10.86 0.96 33.35 3.24
26 27 5.198207 TGACGGAATAACTCACTGAGGATA 58.802 41.667 10.86 4.01 33.35 2.59
27 28 5.067413 TGACGGAATAACTCACTGAGGATAC 59.933 44.000 10.86 0.00 33.35 2.24
28 29 4.036498 ACGGAATAACTCACTGAGGATACG 59.964 45.833 10.86 12.34 46.39 3.06
29 30 4.299978 GGAATAACTCACTGAGGATACGC 58.700 47.826 10.86 0.57 46.39 4.42
42 43 5.924356 TGAGGATACGCAAGATAAAATCCA 58.076 37.500 0.00 0.00 46.20 3.41
43 44 6.533730 TGAGGATACGCAAGATAAAATCCAT 58.466 36.000 0.00 0.00 46.20 3.41
44 45 6.998074 TGAGGATACGCAAGATAAAATCCATT 59.002 34.615 0.00 0.00 46.20 3.16
45 46 7.173218 TGAGGATACGCAAGATAAAATCCATTC 59.827 37.037 0.00 0.00 46.20 2.67
46 47 6.147821 AGGATACGCAAGATAAAATCCATTCG 59.852 38.462 0.00 0.00 46.39 3.34
47 48 6.147164 GGATACGCAAGATAAAATCCATTCGA 59.853 38.462 0.00 0.00 43.62 3.71
48 49 7.148407 GGATACGCAAGATAAAATCCATTCGAT 60.148 37.037 0.00 0.00 43.62 3.59
49 50 5.990408 ACGCAAGATAAAATCCATTCGATC 58.010 37.500 0.00 0.00 43.62 3.69
50 51 5.049405 ACGCAAGATAAAATCCATTCGATCC 60.049 40.000 0.00 0.00 43.62 3.36
51 52 5.049474 CGCAAGATAAAATCCATTCGATCCA 60.049 40.000 0.00 0.00 43.02 3.41
52 53 6.348786 CGCAAGATAAAATCCATTCGATCCAT 60.349 38.462 0.00 0.00 43.02 3.41
53 54 7.373493 GCAAGATAAAATCCATTCGATCCATT 58.627 34.615 0.00 0.00 0.00 3.16
54 55 7.327761 GCAAGATAAAATCCATTCGATCCATTG 59.672 37.037 0.00 0.00 0.00 2.82
55 56 7.458409 AGATAAAATCCATTCGATCCATTGG 57.542 36.000 0.00 0.00 0.00 3.16
56 57 7.006509 AGATAAAATCCATTCGATCCATTGGT 58.993 34.615 1.86 0.00 0.00 3.67
57 58 4.924305 AAATCCATTCGATCCATTGGTG 57.076 40.909 1.86 0.00 0.00 4.17
58 59 3.862877 ATCCATTCGATCCATTGGTGA 57.137 42.857 1.86 0.00 0.00 4.02
59 60 3.198409 TCCATTCGATCCATTGGTGAG 57.802 47.619 1.86 0.00 0.00 3.51
60 61 2.771372 TCCATTCGATCCATTGGTGAGA 59.229 45.455 1.86 0.00 0.00 3.27
61 62 3.136763 CCATTCGATCCATTGGTGAGAG 58.863 50.000 1.86 0.00 0.00 3.20
62 63 3.181462 CCATTCGATCCATTGGTGAGAGA 60.181 47.826 1.86 0.00 0.00 3.10
63 64 4.445453 CATTCGATCCATTGGTGAGAGAA 58.555 43.478 1.86 3.91 0.00 2.87
64 65 4.551702 TTCGATCCATTGGTGAGAGAAA 57.448 40.909 1.86 0.00 0.00 2.52
65 66 3.861840 TCGATCCATTGGTGAGAGAAAC 58.138 45.455 1.86 0.00 0.00 2.78
66 67 2.939103 CGATCCATTGGTGAGAGAAACC 59.061 50.000 1.86 0.00 38.26 3.27
67 68 3.369892 CGATCCATTGGTGAGAGAAACCT 60.370 47.826 1.86 0.00 38.60 3.50
68 69 4.141937 CGATCCATTGGTGAGAGAAACCTA 60.142 45.833 1.86 0.00 38.60 3.08
69 70 5.626809 CGATCCATTGGTGAGAGAAACCTAA 60.627 44.000 1.86 0.00 38.60 2.69
70 71 5.576563 TCCATTGGTGAGAGAAACCTAAA 57.423 39.130 1.86 0.00 38.60 1.85
71 72 5.947663 TCCATTGGTGAGAGAAACCTAAAA 58.052 37.500 1.86 0.00 38.60 1.52
72 73 5.768164 TCCATTGGTGAGAGAAACCTAAAAC 59.232 40.000 1.86 0.00 38.60 2.43
73 74 5.770162 CCATTGGTGAGAGAAACCTAAAACT 59.230 40.000 0.00 0.00 38.60 2.66
74 75 6.265422 CCATTGGTGAGAGAAACCTAAAACTT 59.735 38.462 0.00 0.00 38.60 2.66
75 76 7.201911 CCATTGGTGAGAGAAACCTAAAACTTT 60.202 37.037 0.00 0.00 38.60 2.66
76 77 6.937436 TGGTGAGAGAAACCTAAAACTTTC 57.063 37.500 0.00 0.00 38.60 2.62
77 78 6.419791 TGGTGAGAGAAACCTAAAACTTTCA 58.580 36.000 0.00 0.00 38.60 2.69
78 79 7.060421 TGGTGAGAGAAACCTAAAACTTTCAT 58.940 34.615 0.00 0.00 38.60 2.57
79 80 7.228706 TGGTGAGAGAAACCTAAAACTTTCATC 59.771 37.037 0.00 0.00 38.60 2.92
80 81 7.228706 GGTGAGAGAAACCTAAAACTTTCATCA 59.771 37.037 0.00 0.00 34.66 3.07
81 82 8.787852 GTGAGAGAAACCTAAAACTTTCATCAT 58.212 33.333 0.00 0.00 32.03 2.45
89 90 9.753674 AACCTAAAACTTTCATCATATTCTCCA 57.246 29.630 0.00 0.00 0.00 3.86
90 91 9.753674 ACCTAAAACTTTCATCATATTCTCCAA 57.246 29.630 0.00 0.00 0.00 3.53
95 96 9.525826 AAACTTTCATCATATTCTCCAAGAAGT 57.474 29.630 0.00 0.00 37.69 3.01
96 97 9.525826 AACTTTCATCATATTCTCCAAGAAGTT 57.474 29.630 0.00 0.00 37.69 2.66
97 98 9.171877 ACTTTCATCATATTCTCCAAGAAGTTC 57.828 33.333 0.00 0.00 37.69 3.01
98 99 8.511604 TTTCATCATATTCTCCAAGAAGTTCC 57.488 34.615 0.00 0.00 37.69 3.62
99 100 7.199167 TCATCATATTCTCCAAGAAGTTCCA 57.801 36.000 0.00 0.00 37.69 3.53
100 101 7.632861 TCATCATATTCTCCAAGAAGTTCCAA 58.367 34.615 0.00 0.00 37.69 3.53
101 102 8.277197 TCATCATATTCTCCAAGAAGTTCCAAT 58.723 33.333 0.00 0.00 37.69 3.16
102 103 8.910944 CATCATATTCTCCAAGAAGTTCCAATT 58.089 33.333 0.00 0.00 37.69 2.32
103 104 8.511604 TCATATTCTCCAAGAAGTTCCAATTC 57.488 34.615 0.00 0.00 37.69 2.17
104 105 8.108999 TCATATTCTCCAAGAAGTTCCAATTCA 58.891 33.333 0.00 0.00 37.69 2.57
105 106 6.830873 ATTCTCCAAGAAGTTCCAATTCAG 57.169 37.500 0.00 0.00 37.69 3.02
106 107 5.567037 TCTCCAAGAAGTTCCAATTCAGA 57.433 39.130 0.00 0.00 0.00 3.27
107 108 5.940617 TCTCCAAGAAGTTCCAATTCAGAA 58.059 37.500 0.00 0.00 0.00 3.02
108 109 6.000219 TCTCCAAGAAGTTCCAATTCAGAAG 59.000 40.000 0.00 0.00 0.00 2.85
109 110 5.694995 TCCAAGAAGTTCCAATTCAGAAGT 58.305 37.500 0.00 0.00 0.00 3.01
110 111 5.532406 TCCAAGAAGTTCCAATTCAGAAGTG 59.468 40.000 3.48 3.48 0.00 3.16
112 113 3.823304 AGAAGTTCCAATTCAGAAGTGGC 59.177 43.478 22.61 11.21 45.84 5.01
113 114 3.515602 AGTTCCAATTCAGAAGTGGCT 57.484 42.857 22.61 13.16 45.84 4.75
114 115 3.837355 AGTTCCAATTCAGAAGTGGCTT 58.163 40.909 22.61 9.14 45.84 4.35
115 116 4.218312 AGTTCCAATTCAGAAGTGGCTTT 58.782 39.130 22.61 8.82 45.84 3.51
116 117 4.038402 AGTTCCAATTCAGAAGTGGCTTTG 59.962 41.667 22.61 5.03 45.84 2.77
117 118 3.565307 TCCAATTCAGAAGTGGCTTTGT 58.435 40.909 22.61 0.00 45.84 2.83
118 119 4.724399 TCCAATTCAGAAGTGGCTTTGTA 58.276 39.130 22.61 3.76 45.84 2.41
119 120 4.518970 TCCAATTCAGAAGTGGCTTTGTAC 59.481 41.667 22.61 0.00 45.84 2.90
120 121 4.321230 CCAATTCAGAAGTGGCTTTGTACC 60.321 45.833 16.50 0.00 40.04 3.34
121 122 2.561478 TCAGAAGTGGCTTTGTACCC 57.439 50.000 0.00 0.00 0.00 3.69
122 123 1.073284 TCAGAAGTGGCTTTGTACCCC 59.927 52.381 0.00 0.00 0.00 4.95
123 124 1.073923 CAGAAGTGGCTTTGTACCCCT 59.926 52.381 0.00 0.00 0.00 4.79
124 125 1.780919 AGAAGTGGCTTTGTACCCCTT 59.219 47.619 0.00 0.00 0.00 3.95
125 126 2.177016 AGAAGTGGCTTTGTACCCCTTT 59.823 45.455 0.00 0.00 0.00 3.11
126 127 2.287977 AGTGGCTTTGTACCCCTTTC 57.712 50.000 0.00 0.00 0.00 2.62
127 128 1.203013 AGTGGCTTTGTACCCCTTTCC 60.203 52.381 0.00 0.00 0.00 3.13
128 129 1.154430 TGGCTTTGTACCCCTTTCCT 58.846 50.000 0.00 0.00 0.00 3.36
129 130 1.501604 TGGCTTTGTACCCCTTTCCTT 59.498 47.619 0.00 0.00 0.00 3.36
130 131 2.168496 GGCTTTGTACCCCTTTCCTTC 58.832 52.381 0.00 0.00 0.00 3.46
131 132 2.225041 GGCTTTGTACCCCTTTCCTTCT 60.225 50.000 0.00 0.00 0.00 2.85
132 133 3.082548 GCTTTGTACCCCTTTCCTTCTC 58.917 50.000 0.00 0.00 0.00 2.87
133 134 3.497942 GCTTTGTACCCCTTTCCTTCTCA 60.498 47.826 0.00 0.00 0.00 3.27
134 135 4.327680 CTTTGTACCCCTTTCCTTCTCAG 58.672 47.826 0.00 0.00 0.00 3.35
135 136 1.628846 TGTACCCCTTTCCTTCTCAGC 59.371 52.381 0.00 0.00 0.00 4.26
136 137 0.902531 TACCCCTTTCCTTCTCAGCG 59.097 55.000 0.00 0.00 0.00 5.18
137 138 0.836400 ACCCCTTTCCTTCTCAGCGA 60.836 55.000 0.00 0.00 0.00 4.93
138 139 0.543749 CCCCTTTCCTTCTCAGCGAT 59.456 55.000 0.00 0.00 0.00 4.58
139 140 1.661341 CCCTTTCCTTCTCAGCGATG 58.339 55.000 0.00 0.00 0.00 3.84
140 141 1.661341 CCTTTCCTTCTCAGCGATGG 58.339 55.000 0.00 0.00 38.09 3.51
141 142 1.661341 CTTTCCTTCTCAGCGATGGG 58.339 55.000 0.00 0.00 37.50 4.00
142 143 1.208052 CTTTCCTTCTCAGCGATGGGA 59.792 52.381 0.00 0.00 37.50 4.37
143 144 1.500474 TTCCTTCTCAGCGATGGGAT 58.500 50.000 3.00 0.00 37.50 3.85
144 145 0.755079 TCCTTCTCAGCGATGGGATG 59.245 55.000 3.00 6.79 37.50 3.51
145 146 0.883814 CCTTCTCAGCGATGGGATGC 60.884 60.000 3.00 0.00 34.21 3.91
146 147 0.106335 CTTCTCAGCGATGGGATGCT 59.894 55.000 3.00 0.00 43.58 3.79
147 148 0.543277 TTCTCAGCGATGGGATGCTT 59.457 50.000 3.00 0.00 40.03 3.91
148 149 0.543277 TCTCAGCGATGGGATGCTTT 59.457 50.000 0.00 0.00 40.03 3.51
149 150 1.762370 TCTCAGCGATGGGATGCTTTA 59.238 47.619 0.00 0.00 40.03 1.85
150 151 2.170397 TCTCAGCGATGGGATGCTTTAA 59.830 45.455 0.00 0.00 40.03 1.52
151 152 3.144506 CTCAGCGATGGGATGCTTTAAT 58.855 45.455 0.00 0.00 40.03 1.40
152 153 2.880268 TCAGCGATGGGATGCTTTAATG 59.120 45.455 0.00 0.00 40.03 1.90
153 154 2.880268 CAGCGATGGGATGCTTTAATGA 59.120 45.455 0.00 0.00 40.03 2.57
154 155 3.058432 CAGCGATGGGATGCTTTAATGAG 60.058 47.826 0.00 0.00 40.03 2.90
155 156 2.351157 GCGATGGGATGCTTTAATGAGC 60.351 50.000 0.00 0.00 43.00 4.26
156 157 3.144506 CGATGGGATGCTTTAATGAGCT 58.855 45.455 1.10 0.00 43.11 4.09
157 158 4.318332 CGATGGGATGCTTTAATGAGCTA 58.682 43.478 1.10 0.00 43.11 3.32
158 159 4.153117 CGATGGGATGCTTTAATGAGCTAC 59.847 45.833 1.10 0.00 43.11 3.58
159 160 3.466836 TGGGATGCTTTAATGAGCTACG 58.533 45.455 1.10 0.00 43.11 3.51
160 161 2.224314 GGGATGCTTTAATGAGCTACGC 59.776 50.000 1.10 0.83 43.11 4.42
161 162 3.134458 GGATGCTTTAATGAGCTACGCT 58.866 45.455 1.10 0.00 43.11 5.07
162 163 4.307432 GGATGCTTTAATGAGCTACGCTA 58.693 43.478 1.10 0.00 43.11 4.26
163 164 4.387256 GGATGCTTTAATGAGCTACGCTAG 59.613 45.833 1.10 0.00 43.11 3.42
171 172 2.026301 GCTACGCTAGCCACTCCG 59.974 66.667 9.66 0.00 45.95 4.63
172 173 2.026301 CTACGCTAGCCACTCCGC 59.974 66.667 9.66 0.00 0.00 5.54
173 174 3.486252 CTACGCTAGCCACTCCGCC 62.486 68.421 9.66 0.00 0.00 6.13
176 177 3.866582 GCTAGCCACTCCGCCCAT 61.867 66.667 2.29 0.00 0.00 4.00
177 178 2.109799 CTAGCCACTCCGCCCATG 59.890 66.667 0.00 0.00 0.00 3.66
178 179 2.687200 TAGCCACTCCGCCCATGT 60.687 61.111 0.00 0.00 0.00 3.21
179 180 2.650813 CTAGCCACTCCGCCCATGTC 62.651 65.000 0.00 0.00 0.00 3.06
180 181 4.101448 GCCACTCCGCCCATGTCT 62.101 66.667 0.00 0.00 0.00 3.41
181 182 2.671070 CCACTCCGCCCATGTCTT 59.329 61.111 0.00 0.00 0.00 3.01
182 183 1.746615 CCACTCCGCCCATGTCTTG 60.747 63.158 0.00 0.00 0.00 3.02
183 184 2.045926 ACTCCGCCCATGTCTTGC 60.046 61.111 0.00 0.00 0.00 4.01
184 185 2.270205 CTCCGCCCATGTCTTGCT 59.730 61.111 0.00 0.00 0.00 3.91
185 186 1.817099 CTCCGCCCATGTCTTGCTC 60.817 63.158 0.00 0.00 0.00 4.26
186 187 3.197790 CCGCCCATGTCTTGCTCG 61.198 66.667 0.00 0.00 0.00 5.03
187 188 2.434884 CGCCCATGTCTTGCTCGT 60.435 61.111 0.00 0.00 0.00 4.18
188 189 2.743752 CGCCCATGTCTTGCTCGTG 61.744 63.158 0.00 0.00 0.00 4.35
189 190 1.375908 GCCCATGTCTTGCTCGTGA 60.376 57.895 0.00 0.00 0.00 4.35
190 191 0.745845 GCCCATGTCTTGCTCGTGAT 60.746 55.000 0.00 0.00 0.00 3.06
191 192 1.012086 CCCATGTCTTGCTCGTGATG 58.988 55.000 0.00 0.00 0.00 3.07
192 193 1.405933 CCCATGTCTTGCTCGTGATGA 60.406 52.381 0.00 0.00 0.00 2.92
204 205 2.735823 TCGTGATGAGAATGAGATGCG 58.264 47.619 0.00 0.00 0.00 4.73
205 206 2.099756 TCGTGATGAGAATGAGATGCGT 59.900 45.455 0.00 0.00 0.00 5.24
206 207 2.470628 CGTGATGAGAATGAGATGCGTC 59.529 50.000 0.00 0.00 0.00 5.19
207 208 3.715495 GTGATGAGAATGAGATGCGTCT 58.285 45.455 8.55 8.55 37.42 4.18
208 209 4.118410 GTGATGAGAATGAGATGCGTCTT 58.882 43.478 10.42 0.00 33.97 3.01
209 210 4.569966 GTGATGAGAATGAGATGCGTCTTT 59.430 41.667 10.42 0.68 33.97 2.52
210 211 5.750547 GTGATGAGAATGAGATGCGTCTTTA 59.249 40.000 10.42 3.05 33.97 1.85
211 212 5.981915 TGATGAGAATGAGATGCGTCTTTAG 59.018 40.000 10.42 0.00 33.97 1.85
212 213 5.330455 TGAGAATGAGATGCGTCTTTAGT 57.670 39.130 10.42 1.77 33.97 2.24
213 214 5.724328 TGAGAATGAGATGCGTCTTTAGTT 58.276 37.500 10.42 3.09 33.97 2.24
214 215 5.578336 TGAGAATGAGATGCGTCTTTAGTTG 59.422 40.000 10.42 0.00 33.97 3.16
215 216 5.724328 AGAATGAGATGCGTCTTTAGTTGA 58.276 37.500 10.42 0.00 33.97 3.18
216 217 5.809562 AGAATGAGATGCGTCTTTAGTTGAG 59.190 40.000 10.42 0.00 33.97 3.02
217 218 3.849911 TGAGATGCGTCTTTAGTTGAGG 58.150 45.455 10.42 0.00 33.97 3.86
218 219 2.605366 GAGATGCGTCTTTAGTTGAGGC 59.395 50.000 10.42 0.00 43.17 4.70
219 220 1.324736 GATGCGTCTTTAGTTGAGGCG 59.675 52.381 0.00 0.00 45.01 5.52
220 221 0.315886 TGCGTCTTTAGTTGAGGCGA 59.684 50.000 1.98 0.00 44.48 5.54
221 222 0.992802 GCGTCTTTAGTTGAGGCGAG 59.007 55.000 1.98 0.00 44.48 5.03
222 223 1.669211 GCGTCTTTAGTTGAGGCGAGT 60.669 52.381 1.98 0.00 44.48 4.18
223 224 1.986378 CGTCTTTAGTTGAGGCGAGTG 59.014 52.381 0.00 0.00 44.48 3.51
224 225 2.351447 CGTCTTTAGTTGAGGCGAGTGA 60.351 50.000 0.00 0.00 44.48 3.41
225 226 3.650139 GTCTTTAGTTGAGGCGAGTGAA 58.350 45.455 0.00 0.00 0.00 3.18
226 227 3.675698 GTCTTTAGTTGAGGCGAGTGAAG 59.324 47.826 0.00 0.00 0.00 3.02
227 228 2.080286 TTAGTTGAGGCGAGTGAAGC 57.920 50.000 0.00 0.00 0.00 3.86
233 234 2.499685 GGCGAGTGAAGCCGGTAT 59.500 61.111 1.90 0.00 45.58 2.73
234 235 1.153429 GGCGAGTGAAGCCGGTATT 60.153 57.895 1.90 0.00 45.58 1.89
235 236 1.152383 GGCGAGTGAAGCCGGTATTC 61.152 60.000 1.90 9.00 45.58 1.75
236 237 1.152383 GCGAGTGAAGCCGGTATTCC 61.152 60.000 16.03 9.35 0.00 3.01
237 238 0.174845 CGAGTGAAGCCGGTATTCCA 59.825 55.000 16.03 4.94 0.00 3.53
238 239 1.202533 CGAGTGAAGCCGGTATTCCAT 60.203 52.381 16.03 7.05 0.00 3.41
239 240 2.741878 CGAGTGAAGCCGGTATTCCATT 60.742 50.000 16.03 4.79 0.00 3.16
240 241 3.279434 GAGTGAAGCCGGTATTCCATTT 58.721 45.455 16.03 2.83 0.00 2.32
241 242 3.016736 AGTGAAGCCGGTATTCCATTTG 58.983 45.455 16.03 0.00 0.00 2.32
242 243 2.752903 GTGAAGCCGGTATTCCATTTGT 59.247 45.455 16.03 0.00 0.00 2.83
243 244 3.192633 GTGAAGCCGGTATTCCATTTGTT 59.807 43.478 16.03 0.00 0.00 2.83
244 245 3.829601 TGAAGCCGGTATTCCATTTGTTT 59.170 39.130 16.03 0.00 0.00 2.83
245 246 4.282195 TGAAGCCGGTATTCCATTTGTTTT 59.718 37.500 16.03 0.00 0.00 2.43
246 247 4.450082 AGCCGGTATTCCATTTGTTTTC 57.550 40.909 1.90 0.00 0.00 2.29
247 248 3.829601 AGCCGGTATTCCATTTGTTTTCA 59.170 39.130 1.90 0.00 0.00 2.69
248 249 3.924073 GCCGGTATTCCATTTGTTTTCAC 59.076 43.478 1.90 0.00 0.00 3.18
249 250 4.162812 CCGGTATTCCATTTGTTTTCACG 58.837 43.478 0.00 0.00 0.00 4.35
250 251 4.320641 CCGGTATTCCATTTGTTTTCACGT 60.321 41.667 0.00 0.00 0.00 4.49
251 252 5.216648 CGGTATTCCATTTGTTTTCACGTT 58.783 37.500 0.00 0.00 0.00 3.99
252 253 5.688176 CGGTATTCCATTTGTTTTCACGTTT 59.312 36.000 0.00 0.00 0.00 3.60
253 254 6.199342 CGGTATTCCATTTGTTTTCACGTTTT 59.801 34.615 0.00 0.00 0.00 2.43
254 255 7.254151 CGGTATTCCATTTGTTTTCACGTTTTT 60.254 33.333 0.00 0.00 0.00 1.94
302 303 8.757164 TTTTTGTTTTCTTTCTTCTTCTCCAC 57.243 30.769 0.00 0.00 0.00 4.02
303 304 7.703058 TTTGTTTTCTTTCTTCTTCTCCACT 57.297 32.000 0.00 0.00 0.00 4.00
304 305 7.703058 TTGTTTTCTTTCTTCTTCTCCACTT 57.297 32.000 0.00 0.00 0.00 3.16
305 306 8.801882 TTGTTTTCTTTCTTCTTCTCCACTTA 57.198 30.769 0.00 0.00 0.00 2.24
306 307 8.980481 TGTTTTCTTTCTTCTTCTCCACTTAT 57.020 30.769 0.00 0.00 0.00 1.73
307 308 9.408648 TGTTTTCTTTCTTCTTCTCCACTTATT 57.591 29.630 0.00 0.00 0.00 1.40
308 309 9.670719 GTTTTCTTTCTTCTTCTCCACTTATTG 57.329 33.333 0.00 0.00 0.00 1.90
309 310 8.980481 TTTCTTTCTTCTTCTCCACTTATTGT 57.020 30.769 0.00 0.00 0.00 2.71
310 311 8.980481 TTCTTTCTTCTTCTCCACTTATTGTT 57.020 30.769 0.00 0.00 0.00 2.83
311 312 8.980481 TCTTTCTTCTTCTCCACTTATTGTTT 57.020 30.769 0.00 0.00 0.00 2.83
314 315 9.847224 TTTCTTCTTCTCCACTTATTGTTTAGT 57.153 29.630 0.00 0.00 0.00 2.24
315 316 9.847224 TTCTTCTTCTCCACTTATTGTTTAGTT 57.153 29.630 0.00 0.00 0.00 2.24
316 317 9.847224 TCTTCTTCTCCACTTATTGTTTAGTTT 57.153 29.630 0.00 0.00 0.00 2.66
319 320 9.063615 TCTTCTCCACTTATTGTTTAGTTTTCC 57.936 33.333 0.00 0.00 0.00 3.13
320 321 8.990163 TTCTCCACTTATTGTTTAGTTTTCCT 57.010 30.769 0.00 0.00 0.00 3.36
321 322 8.990163 TCTCCACTTATTGTTTAGTTTTCCTT 57.010 30.769 0.00 0.00 0.00 3.36
322 323 9.416284 TCTCCACTTATTGTTTAGTTTTCCTTT 57.584 29.630 0.00 0.00 0.00 3.11
325 326 9.256477 CCACTTATTGTTTAGTTTTCCTTTTCC 57.744 33.333 0.00 0.00 0.00 3.13
326 327 9.810545 CACTTATTGTTTAGTTTTCCTTTTCCA 57.189 29.630 0.00 0.00 0.00 3.53
332 333 9.952030 TTGTTTAGTTTTCCTTTTCCATCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
333 334 9.952030 TGTTTAGTTTTCCTTTTCCATCTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
335 336 8.956533 TTAGTTTTCCTTTTCCATCTTTTTGG 57.043 30.769 0.00 0.00 38.18 3.28
336 337 5.822519 AGTTTTCCTTTTCCATCTTTTTGGC 59.177 36.000 0.00 0.00 36.66 4.52
337 338 5.628797 TTTCCTTTTCCATCTTTTTGGCT 57.371 34.783 0.00 0.00 36.66 4.75
338 339 5.628797 TTCCTTTTCCATCTTTTTGGCTT 57.371 34.783 0.00 0.00 36.66 4.35
339 340 5.628797 TCCTTTTCCATCTTTTTGGCTTT 57.371 34.783 0.00 0.00 36.66 3.51
340 341 5.610398 TCCTTTTCCATCTTTTTGGCTTTC 58.390 37.500 0.00 0.00 36.66 2.62
341 342 5.366477 TCCTTTTCCATCTTTTTGGCTTTCT 59.634 36.000 0.00 0.00 36.66 2.52
342 343 6.057533 CCTTTTCCATCTTTTTGGCTTTCTT 58.942 36.000 0.00 0.00 36.66 2.52
343 344 6.543465 CCTTTTCCATCTTTTTGGCTTTCTTT 59.457 34.615 0.00 0.00 36.66 2.52
344 345 7.067372 CCTTTTCCATCTTTTTGGCTTTCTTTT 59.933 33.333 0.00 0.00 36.66 2.27
345 346 6.923928 TTCCATCTTTTTGGCTTTCTTTTG 57.076 33.333 0.00 0.00 36.66 2.44
346 347 5.988287 TCCATCTTTTTGGCTTTCTTTTGT 58.012 33.333 0.00 0.00 36.66 2.83
347 348 6.413892 TCCATCTTTTTGGCTTTCTTTTGTT 58.586 32.000 0.00 0.00 36.66 2.83
348 349 6.883756 TCCATCTTTTTGGCTTTCTTTTGTTT 59.116 30.769 0.00 0.00 36.66 2.83
349 350 7.392953 TCCATCTTTTTGGCTTTCTTTTGTTTT 59.607 29.630 0.00 0.00 36.66 2.43
350 351 8.672815 CCATCTTTTTGGCTTTCTTTTGTTTTA 58.327 29.630 0.00 0.00 0.00 1.52
359 360 9.665719 TGGCTTTCTTTTGTTTTATTTTCTTCT 57.334 25.926 0.00 0.00 0.00 2.85
407 408 6.660887 TTTTCCTTCAAATGCTTGTTCAAC 57.339 33.333 0.00 0.00 33.94 3.18
408 409 4.998671 TCCTTCAAATGCTTGTTCAACA 57.001 36.364 0.00 0.00 33.94 3.33
409 410 5.534207 TCCTTCAAATGCTTGTTCAACAT 57.466 34.783 0.00 0.00 33.94 2.71
410 411 5.916318 TCCTTCAAATGCTTGTTCAACATT 58.084 33.333 0.00 7.18 35.59 2.71
411 412 6.347696 TCCTTCAAATGCTTGTTCAACATTT 58.652 32.000 14.15 14.15 43.01 2.32
412 413 6.822676 TCCTTCAAATGCTTGTTCAACATTTT 59.177 30.769 15.80 0.00 40.94 1.82
413 414 7.336427 TCCTTCAAATGCTTGTTCAACATTTTT 59.664 29.630 15.80 0.00 40.94 1.94
437 438 9.598517 TTTTCAAATACTTGTTCAGCATTTTCT 57.401 25.926 0.00 0.00 27.19 2.52
438 439 9.598517 TTTCAAATACTTGTTCAGCATTTTCTT 57.401 25.926 0.00 0.00 27.19 2.52
503 504 9.688592 TTTTTCAAATGCTTGTTCAACATTTTT 57.311 22.222 15.80 0.00 40.94 1.94
513 514 9.777843 GCTTGTTCAACATTTTTAAAATAGTCG 57.222 29.630 0.55 0.00 0.00 4.18
517 518 9.968620 GTTCAACATTTTTAAAATAGTCGTTCG 57.031 29.630 0.55 0.67 0.00 3.95
518 519 9.719279 TTCAACATTTTTAAAATAGTCGTTCGT 57.281 25.926 0.55 0.00 0.00 3.85
519 520 9.160576 TCAACATTTTTAAAATAGTCGTTCGTG 57.839 29.630 0.55 0.00 0.00 4.35
520 521 9.160576 CAACATTTTTAAAATAGTCGTTCGTGA 57.839 29.630 0.55 0.00 0.00 4.35
521 522 9.719279 AACATTTTTAAAATAGTCGTTCGTGAA 57.281 25.926 0.55 0.00 0.00 3.18
522 523 9.887406 ACATTTTTAAAATAGTCGTTCGTGAAT 57.113 25.926 0.55 0.00 0.00 2.57
527 528 9.932699 TTTAAAATAGTCGTTCGTGAATTTTCA 57.067 25.926 12.79 0.00 31.21 2.69
531 532 9.702726 AAATAGTCGTTCGTGAATTTTCATATG 57.297 29.630 0.00 0.00 39.73 1.78
532 533 6.721571 AGTCGTTCGTGAATTTTCATATGT 57.278 33.333 1.90 0.00 39.73 2.29
533 534 7.129109 AGTCGTTCGTGAATTTTCATATGTT 57.871 32.000 1.90 0.00 39.73 2.71
534 535 8.246908 AGTCGTTCGTGAATTTTCATATGTTA 57.753 30.769 1.90 0.00 39.73 2.41
535 536 8.879759 AGTCGTTCGTGAATTTTCATATGTTAT 58.120 29.630 1.90 0.00 39.73 1.89
536 537 9.485591 GTCGTTCGTGAATTTTCATATGTTATT 57.514 29.630 1.90 1.52 39.73 1.40
537 538 9.484326 TCGTTCGTGAATTTTCATATGTTATTG 57.516 29.630 1.90 0.00 39.73 1.90
538 539 8.733128 CGTTCGTGAATTTTCATATGTTATTGG 58.267 33.333 1.90 0.00 39.73 3.16
539 540 9.781834 GTTCGTGAATTTTCATATGTTATTGGA 57.218 29.630 1.90 0.00 39.73 3.53
650 651 7.814264 AAAATATAGAGAATGTGCCTTCCAG 57.186 36.000 0.00 0.00 0.00 3.86
651 652 2.698855 TAGAGAATGTGCCTTCCAGC 57.301 50.000 0.00 0.00 0.00 4.85
652 653 0.392193 AGAGAATGTGCCTTCCAGCG 60.392 55.000 0.00 0.00 34.65 5.18
653 654 0.391661 GAGAATGTGCCTTCCAGCGA 60.392 55.000 0.00 0.00 34.65 4.93
654 655 0.036732 AGAATGTGCCTTCCAGCGAA 59.963 50.000 0.00 0.00 34.65 4.70
655 656 0.169009 GAATGTGCCTTCCAGCGAAC 59.831 55.000 0.00 0.00 34.65 3.95
656 657 1.244019 AATGTGCCTTCCAGCGAACC 61.244 55.000 0.00 0.00 34.65 3.62
657 658 2.032681 GTGCCTTCCAGCGAACCT 59.967 61.111 0.00 0.00 34.65 3.50
658 659 2.032528 TGCCTTCCAGCGAACCTG 59.967 61.111 0.00 0.00 41.41 4.00
680 681 3.446570 GGCCCATGTGCTGCTGAC 61.447 66.667 0.00 0.00 0.00 3.51
681 682 2.360852 GCCCATGTGCTGCTGACT 60.361 61.111 0.00 0.00 0.00 3.41
682 683 2.404995 GCCCATGTGCTGCTGACTC 61.405 63.158 0.00 0.00 0.00 3.36
683 684 1.298993 CCCATGTGCTGCTGACTCT 59.701 57.895 0.00 0.00 0.00 3.24
684 685 0.743701 CCCATGTGCTGCTGACTCTC 60.744 60.000 0.00 0.00 0.00 3.20
685 686 0.249676 CCATGTGCTGCTGACTCTCT 59.750 55.000 0.00 0.00 0.00 3.10
686 687 1.642728 CATGTGCTGCTGACTCTCTC 58.357 55.000 0.00 0.00 0.00 3.20
687 688 1.205179 CATGTGCTGCTGACTCTCTCT 59.795 52.381 0.00 0.00 0.00 3.10
688 689 0.887247 TGTGCTGCTGACTCTCTCTC 59.113 55.000 0.00 0.00 0.00 3.20
689 690 1.176527 GTGCTGCTGACTCTCTCTCT 58.823 55.000 0.00 0.00 0.00 3.10
690 691 1.135315 GTGCTGCTGACTCTCTCTCTG 60.135 57.143 0.00 0.00 0.00 3.35
691 692 0.457035 GCTGCTGACTCTCTCTCTGG 59.543 60.000 0.00 0.00 0.00 3.86
692 693 1.954733 GCTGCTGACTCTCTCTCTGGA 60.955 57.143 0.00 0.00 0.00 3.86
693 694 1.745087 CTGCTGACTCTCTCTCTGGAC 59.255 57.143 0.00 0.00 0.00 4.02
694 695 0.732571 GCTGACTCTCTCTCTGGACG 59.267 60.000 0.00 0.00 0.00 4.79
695 696 0.732571 CTGACTCTCTCTCTGGACGC 59.267 60.000 0.00 0.00 0.00 5.19
696 697 1.021920 TGACTCTCTCTCTGGACGCG 61.022 60.000 3.53 3.53 0.00 6.01
697 698 0.741574 GACTCTCTCTCTGGACGCGA 60.742 60.000 15.93 0.00 0.00 5.87
698 699 0.742990 ACTCTCTCTCTGGACGCGAG 60.743 60.000 15.93 0.00 0.00 5.03
699 700 2.047151 CTCTCTCTCTGGACGCGAGC 62.047 65.000 15.93 3.71 0.00 5.03
700 701 3.447634 CTCTCTCTGGACGCGAGCG 62.448 68.421 15.93 16.38 46.03 5.03
721 722 4.738998 CCCCACCCGCAGCATCAA 62.739 66.667 0.00 0.00 0.00 2.57
722 723 3.443045 CCCACCCGCAGCATCAAC 61.443 66.667 0.00 0.00 0.00 3.18
723 724 3.803082 CCACCCGCAGCATCAACG 61.803 66.667 0.00 0.00 0.00 4.10
724 725 2.741985 CACCCGCAGCATCAACGA 60.742 61.111 0.00 0.00 0.00 3.85
725 726 2.434884 ACCCGCAGCATCAACGAG 60.435 61.111 0.00 0.00 0.00 4.18
726 727 3.869272 CCCGCAGCATCAACGAGC 61.869 66.667 0.00 0.00 0.00 5.03
727 728 2.816958 CCGCAGCATCAACGAGCT 60.817 61.111 0.00 0.00 42.94 4.09
728 729 2.393768 CCGCAGCATCAACGAGCTT 61.394 57.895 0.00 0.00 39.50 3.74
729 730 1.059994 CGCAGCATCAACGAGCTTC 59.940 57.895 0.00 0.00 39.50 3.86
730 731 1.427020 GCAGCATCAACGAGCTTCC 59.573 57.895 0.00 0.00 39.50 3.46
731 732 1.300971 GCAGCATCAACGAGCTTCCA 61.301 55.000 0.00 0.00 39.50 3.53
732 733 1.376543 CAGCATCAACGAGCTTCCAT 58.623 50.000 0.00 0.00 39.50 3.41
733 734 1.329906 CAGCATCAACGAGCTTCCATC 59.670 52.381 0.00 0.00 39.50 3.51
734 735 0.659957 GCATCAACGAGCTTCCATCC 59.340 55.000 0.00 0.00 0.00 3.51
735 736 1.303309 CATCAACGAGCTTCCATCCC 58.697 55.000 0.00 0.00 0.00 3.85
736 737 0.911769 ATCAACGAGCTTCCATCCCA 59.088 50.000 0.00 0.00 0.00 4.37
737 738 0.036388 TCAACGAGCTTCCATCCCAC 60.036 55.000 0.00 0.00 0.00 4.61
738 739 1.079127 AACGAGCTTCCATCCCACG 60.079 57.895 0.00 0.00 0.00 4.94
763 764 2.430367 GTGCTCACCCCCGAAACT 59.570 61.111 0.00 0.00 0.00 2.66
816 817 0.620556 GCTCCAAACCTCATCTCCCA 59.379 55.000 0.00 0.00 0.00 4.37
1179 1196 0.889306 AGTACCAGAAGAGCACGGAC 59.111 55.000 0.00 0.00 0.00 4.79
1553 1613 6.317857 GCAGTGAAAAGTTCAGTTATCATCC 58.682 40.000 0.00 0.00 41.24 3.51
1555 1615 6.368791 CAGTGAAAAGTTCAGTTATCATCCGA 59.631 38.462 0.00 0.00 41.24 4.55
2221 2721 2.452600 TCACAAGGTGAAGGCCTTTT 57.547 45.000 21.54 6.92 45.91 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.046591 TCCTCAGTGAGTTATTCCGTCAAAT 60.047 40.000 18.74 0.00 0.00 2.32
1 2 4.282449 TCCTCAGTGAGTTATTCCGTCAAA 59.718 41.667 18.74 0.00 0.00 2.69
2 3 3.830178 TCCTCAGTGAGTTATTCCGTCAA 59.170 43.478 18.74 0.00 0.00 3.18
3 4 3.427573 TCCTCAGTGAGTTATTCCGTCA 58.572 45.455 18.74 0.00 0.00 4.35
4 5 4.657436 ATCCTCAGTGAGTTATTCCGTC 57.343 45.455 18.74 0.00 0.00 4.79
5 6 4.036498 CGTATCCTCAGTGAGTTATTCCGT 59.964 45.833 18.74 0.00 0.00 4.69
6 7 4.537965 CGTATCCTCAGTGAGTTATTCCG 58.462 47.826 18.74 12.49 0.00 4.30
7 8 4.202121 TGCGTATCCTCAGTGAGTTATTCC 60.202 45.833 18.74 4.13 0.00 3.01
8 9 4.933330 TGCGTATCCTCAGTGAGTTATTC 58.067 43.478 18.74 8.81 0.00 1.75
9 10 5.127194 TCTTGCGTATCCTCAGTGAGTTATT 59.873 40.000 18.74 3.42 0.00 1.40
10 11 4.645136 TCTTGCGTATCCTCAGTGAGTTAT 59.355 41.667 18.74 13.54 0.00 1.89
11 12 4.014406 TCTTGCGTATCCTCAGTGAGTTA 58.986 43.478 18.74 7.11 0.00 2.24
12 13 2.826128 TCTTGCGTATCCTCAGTGAGTT 59.174 45.455 18.74 8.52 0.00 3.01
13 14 2.447443 TCTTGCGTATCCTCAGTGAGT 58.553 47.619 18.74 3.98 0.00 3.41
14 15 3.724508 ATCTTGCGTATCCTCAGTGAG 57.275 47.619 13.56 13.56 0.00 3.51
15 16 5.592104 TTTATCTTGCGTATCCTCAGTGA 57.408 39.130 0.00 0.00 0.00 3.41
16 17 6.073548 GGATTTTATCTTGCGTATCCTCAGTG 60.074 42.308 0.00 0.00 31.11 3.66
17 18 5.992217 GGATTTTATCTTGCGTATCCTCAGT 59.008 40.000 0.00 0.00 31.11 3.41
18 19 5.991606 TGGATTTTATCTTGCGTATCCTCAG 59.008 40.000 0.00 0.00 34.13 3.35
19 20 5.924356 TGGATTTTATCTTGCGTATCCTCA 58.076 37.500 0.00 0.00 34.13 3.86
20 21 7.440523 AATGGATTTTATCTTGCGTATCCTC 57.559 36.000 0.00 0.00 34.13 3.71
21 22 6.147821 CGAATGGATTTTATCTTGCGTATCCT 59.852 38.462 0.00 0.00 34.13 3.24
22 23 6.147164 TCGAATGGATTTTATCTTGCGTATCC 59.853 38.462 0.00 0.00 33.71 2.59
23 24 7.117241 TCGAATGGATTTTATCTTGCGTATC 57.883 36.000 0.00 0.00 0.00 2.24
24 25 7.148407 GGATCGAATGGATTTTATCTTGCGTAT 60.148 37.037 0.00 0.00 34.82 3.06
25 26 6.147164 GGATCGAATGGATTTTATCTTGCGTA 59.853 38.462 0.00 0.00 34.82 4.42
26 27 5.049405 GGATCGAATGGATTTTATCTTGCGT 60.049 40.000 0.00 0.00 34.82 5.24
27 28 5.049474 TGGATCGAATGGATTTTATCTTGCG 60.049 40.000 0.00 0.00 34.82 4.85
28 29 6.317789 TGGATCGAATGGATTTTATCTTGC 57.682 37.500 0.00 0.00 34.82 4.01
29 30 7.811236 CCAATGGATCGAATGGATTTTATCTTG 59.189 37.037 5.94 0.00 34.82 3.02
30 31 7.506938 ACCAATGGATCGAATGGATTTTATCTT 59.493 33.333 17.79 0.00 34.82 2.40
31 32 7.006509 ACCAATGGATCGAATGGATTTTATCT 58.993 34.615 17.79 0.00 34.82 1.98
32 33 7.040478 TCACCAATGGATCGAATGGATTTTATC 60.040 37.037 17.79 0.00 34.82 1.75
33 34 6.777091 TCACCAATGGATCGAATGGATTTTAT 59.223 34.615 17.79 0.00 34.82 1.40
34 35 6.125719 TCACCAATGGATCGAATGGATTTTA 58.874 36.000 17.79 0.00 34.82 1.52
35 36 4.955450 TCACCAATGGATCGAATGGATTTT 59.045 37.500 17.79 0.00 34.82 1.82
36 37 4.535781 TCACCAATGGATCGAATGGATTT 58.464 39.130 17.79 0.00 34.82 2.17
37 38 4.139786 CTCACCAATGGATCGAATGGATT 58.860 43.478 17.79 0.00 34.82 3.01
38 39 3.392285 TCTCACCAATGGATCGAATGGAT 59.608 43.478 17.79 0.70 38.35 3.41
39 40 2.771372 TCTCACCAATGGATCGAATGGA 59.229 45.455 17.79 0.00 36.75 3.41
40 41 3.136763 CTCTCACCAATGGATCGAATGG 58.863 50.000 6.16 10.07 38.91 3.16
41 42 4.063998 TCTCTCACCAATGGATCGAATG 57.936 45.455 6.16 0.00 0.00 2.67
42 43 4.760530 TTCTCTCACCAATGGATCGAAT 57.239 40.909 6.16 0.00 0.00 3.34
43 44 4.253685 GTTTCTCTCACCAATGGATCGAA 58.746 43.478 6.16 0.00 0.00 3.71
44 45 3.369471 GGTTTCTCTCACCAATGGATCGA 60.369 47.826 6.16 0.00 34.04 3.59
45 46 2.939103 GGTTTCTCTCACCAATGGATCG 59.061 50.000 6.16 0.00 34.04 3.69
46 47 4.227864 AGGTTTCTCTCACCAATGGATC 57.772 45.455 6.16 0.00 36.67 3.36
47 48 5.779241 TTAGGTTTCTCTCACCAATGGAT 57.221 39.130 6.16 0.00 36.67 3.41
48 49 5.576563 TTTAGGTTTCTCTCACCAATGGA 57.423 39.130 6.16 0.00 36.67 3.41
49 50 5.770162 AGTTTTAGGTTTCTCTCACCAATGG 59.230 40.000 0.00 0.00 36.67 3.16
50 51 6.884280 AGTTTTAGGTTTCTCTCACCAATG 57.116 37.500 0.00 0.00 36.67 2.82
51 52 7.559897 TGAAAGTTTTAGGTTTCTCTCACCAAT 59.440 33.333 0.00 0.00 36.67 3.16
52 53 6.887545 TGAAAGTTTTAGGTTTCTCTCACCAA 59.112 34.615 0.00 0.00 36.67 3.67
53 54 6.419791 TGAAAGTTTTAGGTTTCTCTCACCA 58.580 36.000 0.00 0.00 36.67 4.17
54 55 6.937436 TGAAAGTTTTAGGTTTCTCTCACC 57.063 37.500 0.00 0.00 34.37 4.02
55 56 8.154649 TGATGAAAGTTTTAGGTTTCTCTCAC 57.845 34.615 0.00 0.00 34.37 3.51
56 57 8.924511 ATGATGAAAGTTTTAGGTTTCTCTCA 57.075 30.769 0.00 0.00 34.37 3.27
63 64 9.753674 TGGAGAATATGATGAAAGTTTTAGGTT 57.246 29.630 0.00 0.00 0.00 3.50
64 65 9.753674 TTGGAGAATATGATGAAAGTTTTAGGT 57.246 29.630 0.00 0.00 0.00 3.08
69 70 9.525826 ACTTCTTGGAGAATATGATGAAAGTTT 57.474 29.630 0.00 0.00 33.13 2.66
70 71 9.525826 AACTTCTTGGAGAATATGATGAAAGTT 57.474 29.630 0.00 0.00 33.13 2.66
71 72 9.171877 GAACTTCTTGGAGAATATGATGAAAGT 57.828 33.333 0.00 0.00 33.13 2.66
72 73 8.619546 GGAACTTCTTGGAGAATATGATGAAAG 58.380 37.037 0.00 0.00 33.13 2.62
73 74 8.108999 TGGAACTTCTTGGAGAATATGATGAAA 58.891 33.333 0.00 0.00 33.13 2.69
74 75 7.632861 TGGAACTTCTTGGAGAATATGATGAA 58.367 34.615 0.00 0.00 33.13 2.57
75 76 7.199167 TGGAACTTCTTGGAGAATATGATGA 57.801 36.000 0.00 0.00 33.13 2.92
76 77 7.870509 TTGGAACTTCTTGGAGAATATGATG 57.129 36.000 0.00 0.00 33.13 3.07
77 78 9.129532 GAATTGGAACTTCTTGGAGAATATGAT 57.870 33.333 0.00 0.00 33.13 2.45
78 79 8.108999 TGAATTGGAACTTCTTGGAGAATATGA 58.891 33.333 0.00 0.00 33.13 2.15
79 80 8.284945 TGAATTGGAACTTCTTGGAGAATATG 57.715 34.615 0.00 0.00 33.13 1.78
80 81 8.331740 TCTGAATTGGAACTTCTTGGAGAATAT 58.668 33.333 0.00 0.00 33.13 1.28
81 82 7.689299 TCTGAATTGGAACTTCTTGGAGAATA 58.311 34.615 0.00 0.00 33.13 1.75
82 83 6.546484 TCTGAATTGGAACTTCTTGGAGAAT 58.454 36.000 0.00 0.00 33.13 2.40
83 84 5.940617 TCTGAATTGGAACTTCTTGGAGAA 58.059 37.500 0.00 0.00 32.50 2.87
84 85 5.567037 TCTGAATTGGAACTTCTTGGAGA 57.433 39.130 0.00 0.00 0.00 3.71
85 86 5.767168 ACTTCTGAATTGGAACTTCTTGGAG 59.233 40.000 0.00 0.00 0.00 3.86
86 87 5.532406 CACTTCTGAATTGGAACTTCTTGGA 59.468 40.000 0.18 0.00 0.00 3.53
87 88 5.278660 CCACTTCTGAATTGGAACTTCTTGG 60.279 44.000 18.93 0.00 33.32 3.61
88 89 5.766222 CCACTTCTGAATTGGAACTTCTTG 58.234 41.667 18.93 0.00 33.32 3.02
89 90 4.279420 GCCACTTCTGAATTGGAACTTCTT 59.721 41.667 25.61 0.00 33.32 2.52
90 91 3.823304 GCCACTTCTGAATTGGAACTTCT 59.177 43.478 25.61 0.00 33.32 2.85
91 92 3.823304 AGCCACTTCTGAATTGGAACTTC 59.177 43.478 25.61 10.85 33.32 3.01
92 93 3.837355 AGCCACTTCTGAATTGGAACTT 58.163 40.909 25.61 8.66 33.32 2.66
93 94 3.515602 AGCCACTTCTGAATTGGAACT 57.484 42.857 25.61 13.80 33.32 3.01
94 95 4.202151 ACAAAGCCACTTCTGAATTGGAAC 60.202 41.667 25.61 12.05 33.32 3.62
95 96 3.960102 ACAAAGCCACTTCTGAATTGGAA 59.040 39.130 25.61 0.00 33.32 3.53
96 97 3.565307 ACAAAGCCACTTCTGAATTGGA 58.435 40.909 25.61 0.00 33.32 3.53
97 98 4.321230 GGTACAAAGCCACTTCTGAATTGG 60.321 45.833 19.27 19.27 34.56 3.16
98 99 4.321230 GGGTACAAAGCCACTTCTGAATTG 60.321 45.833 0.00 1.11 43.18 2.32
99 100 3.826729 GGGTACAAAGCCACTTCTGAATT 59.173 43.478 0.00 0.00 43.18 2.17
100 101 3.421844 GGGTACAAAGCCACTTCTGAAT 58.578 45.455 0.00 0.00 43.18 2.57
101 102 2.488347 GGGGTACAAAGCCACTTCTGAA 60.488 50.000 0.00 0.00 45.66 3.02
102 103 1.073284 GGGGTACAAAGCCACTTCTGA 59.927 52.381 0.00 0.00 45.66 3.27
103 104 1.073923 AGGGGTACAAAGCCACTTCTG 59.926 52.381 0.00 0.00 45.66 3.02
104 105 1.446016 AGGGGTACAAAGCCACTTCT 58.554 50.000 0.00 0.00 45.66 2.85
105 106 2.287977 AAGGGGTACAAAGCCACTTC 57.712 50.000 0.00 0.00 45.96 3.01
107 108 1.203013 GGAAAGGGGTACAAAGCCACT 60.203 52.381 0.00 0.00 45.66 4.00
108 109 1.203013 AGGAAAGGGGTACAAAGCCAC 60.203 52.381 0.00 0.00 45.66 5.01
109 110 1.154430 AGGAAAGGGGTACAAAGCCA 58.846 50.000 0.00 0.00 45.66 4.75
110 111 2.168496 GAAGGAAAGGGGTACAAAGCC 58.832 52.381 0.00 0.00 42.94 4.35
111 112 3.082548 GAGAAGGAAAGGGGTACAAAGC 58.917 50.000 0.00 0.00 0.00 3.51
112 113 4.327680 CTGAGAAGGAAAGGGGTACAAAG 58.672 47.826 0.00 0.00 0.00 2.77
113 114 3.497942 GCTGAGAAGGAAAGGGGTACAAA 60.498 47.826 0.00 0.00 0.00 2.83
114 115 2.039879 GCTGAGAAGGAAAGGGGTACAA 59.960 50.000 0.00 0.00 0.00 2.41
115 116 1.628846 GCTGAGAAGGAAAGGGGTACA 59.371 52.381 0.00 0.00 0.00 2.90
116 117 1.405661 CGCTGAGAAGGAAAGGGGTAC 60.406 57.143 0.00 0.00 0.00 3.34
117 118 0.902531 CGCTGAGAAGGAAAGGGGTA 59.097 55.000 0.00 0.00 0.00 3.69
118 119 0.836400 TCGCTGAGAAGGAAAGGGGT 60.836 55.000 0.00 0.00 0.00 4.95
119 120 0.543749 ATCGCTGAGAAGGAAAGGGG 59.456 55.000 0.00 0.00 0.00 4.79
120 121 1.661341 CATCGCTGAGAAGGAAAGGG 58.339 55.000 0.00 0.00 0.00 3.95
121 122 1.661341 CCATCGCTGAGAAGGAAAGG 58.339 55.000 0.00 0.00 40.01 3.11
122 123 1.208052 TCCCATCGCTGAGAAGGAAAG 59.792 52.381 4.18 0.00 40.01 2.62
123 124 1.275666 TCCCATCGCTGAGAAGGAAA 58.724 50.000 4.18 0.00 40.01 3.13
124 125 1.139654 CATCCCATCGCTGAGAAGGAA 59.860 52.381 4.18 0.00 40.01 3.36
125 126 0.755079 CATCCCATCGCTGAGAAGGA 59.245 55.000 4.18 5.25 40.01 3.36
126 127 0.883814 GCATCCCATCGCTGAGAAGG 60.884 60.000 0.00 0.00 37.46 3.46
127 128 0.106335 AGCATCCCATCGCTGAGAAG 59.894 55.000 0.00 0.00 37.02 2.85
128 129 0.543277 AAGCATCCCATCGCTGAGAA 59.457 50.000 0.00 0.00 38.82 2.87
129 130 0.543277 AAAGCATCCCATCGCTGAGA 59.457 50.000 0.00 0.00 38.82 3.27
130 131 2.245159 TAAAGCATCCCATCGCTGAG 57.755 50.000 0.00 0.00 38.82 3.35
131 132 2.708216 TTAAAGCATCCCATCGCTGA 57.292 45.000 0.00 0.00 38.82 4.26
132 133 2.880268 TCATTAAAGCATCCCATCGCTG 59.120 45.455 0.00 0.00 38.82 5.18
133 134 3.144506 CTCATTAAAGCATCCCATCGCT 58.855 45.455 0.00 0.00 41.20 4.93
134 135 2.351157 GCTCATTAAAGCATCCCATCGC 60.351 50.000 0.00 0.00 42.05 4.58
135 136 3.144506 AGCTCATTAAAGCATCCCATCG 58.855 45.455 2.15 0.00 45.00 3.84
136 137 4.153117 CGTAGCTCATTAAAGCATCCCATC 59.847 45.833 0.00 0.00 45.00 3.51
137 138 4.067896 CGTAGCTCATTAAAGCATCCCAT 58.932 43.478 0.00 0.00 45.00 4.00
138 139 3.466836 CGTAGCTCATTAAAGCATCCCA 58.533 45.455 0.00 0.00 45.00 4.37
155 156 2.026301 GCGGAGTGGCTAGCGTAG 59.974 66.667 9.00 0.00 0.00 3.51
156 157 3.524606 GGCGGAGTGGCTAGCGTA 61.525 66.667 9.00 0.00 40.72 4.42
159 160 3.866582 ATGGGCGGAGTGGCTAGC 61.867 66.667 6.04 6.04 44.11 3.42
160 161 2.109799 CATGGGCGGAGTGGCTAG 59.890 66.667 0.00 0.00 44.11 3.42
161 162 2.687200 ACATGGGCGGAGTGGCTA 60.687 61.111 0.00 0.00 44.11 3.93
162 163 4.101448 GACATGGGCGGAGTGGCT 62.101 66.667 0.00 0.00 44.11 4.75
163 164 3.628646 AAGACATGGGCGGAGTGGC 62.629 63.158 0.00 0.00 43.88 5.01
164 165 1.746615 CAAGACATGGGCGGAGTGG 60.747 63.158 0.00 0.00 0.00 4.00
165 166 2.401766 GCAAGACATGGGCGGAGTG 61.402 63.158 0.00 0.00 0.00 3.51
166 167 2.045926 GCAAGACATGGGCGGAGT 60.046 61.111 0.00 0.00 0.00 3.85
167 168 1.817099 GAGCAAGACATGGGCGGAG 60.817 63.158 0.00 0.00 0.00 4.63
168 169 2.268920 GAGCAAGACATGGGCGGA 59.731 61.111 0.00 0.00 0.00 5.54
169 170 3.197790 CGAGCAAGACATGGGCGG 61.198 66.667 0.00 0.00 0.00 6.13
170 171 2.434884 ACGAGCAAGACATGGGCG 60.435 61.111 0.00 0.00 0.00 6.13
171 172 0.745845 ATCACGAGCAAGACATGGGC 60.746 55.000 0.00 0.00 0.00 5.36
172 173 1.012086 CATCACGAGCAAGACATGGG 58.988 55.000 0.00 0.00 0.00 4.00
173 174 1.931841 CTCATCACGAGCAAGACATGG 59.068 52.381 0.00 0.00 34.18 3.66
174 175 2.884827 TCTCATCACGAGCAAGACATG 58.115 47.619 0.00 0.00 41.98 3.21
175 176 3.599730 TTCTCATCACGAGCAAGACAT 57.400 42.857 0.00 0.00 41.98 3.06
176 177 3.056607 TCATTCTCATCACGAGCAAGACA 60.057 43.478 0.00 0.00 41.98 3.41
177 178 3.515630 TCATTCTCATCACGAGCAAGAC 58.484 45.455 0.00 0.00 41.98 3.01
178 179 3.445096 TCTCATTCTCATCACGAGCAAGA 59.555 43.478 0.00 0.00 41.98 3.02
179 180 3.778618 TCTCATTCTCATCACGAGCAAG 58.221 45.455 0.00 0.00 41.98 4.01
180 181 3.874392 TCTCATTCTCATCACGAGCAA 57.126 42.857 0.00 0.00 41.98 3.91
181 182 3.714391 CATCTCATTCTCATCACGAGCA 58.286 45.455 0.00 0.00 41.98 4.26
182 183 2.475864 GCATCTCATTCTCATCACGAGC 59.524 50.000 0.00 0.00 41.98 5.03
183 184 2.725206 CGCATCTCATTCTCATCACGAG 59.275 50.000 0.00 0.00 43.80 4.18
184 185 2.099756 ACGCATCTCATTCTCATCACGA 59.900 45.455 0.00 0.00 0.00 4.35
185 186 2.467838 ACGCATCTCATTCTCATCACG 58.532 47.619 0.00 0.00 0.00 4.35
186 187 3.715495 AGACGCATCTCATTCTCATCAC 58.285 45.455 0.00 0.00 0.00 3.06
187 188 4.397481 AAGACGCATCTCATTCTCATCA 57.603 40.909 0.00 0.00 32.34 3.07
188 189 5.982516 ACTAAAGACGCATCTCATTCTCATC 59.017 40.000 0.00 0.00 32.34 2.92
189 190 5.911752 ACTAAAGACGCATCTCATTCTCAT 58.088 37.500 0.00 0.00 32.34 2.90
190 191 5.330455 ACTAAAGACGCATCTCATTCTCA 57.670 39.130 0.00 0.00 32.34 3.27
191 192 5.807520 TCAACTAAAGACGCATCTCATTCTC 59.192 40.000 0.00 0.00 32.34 2.87
192 193 5.724328 TCAACTAAAGACGCATCTCATTCT 58.276 37.500 0.00 0.00 32.34 2.40
193 194 5.006165 CCTCAACTAAAGACGCATCTCATTC 59.994 44.000 0.00 0.00 32.34 2.67
194 195 4.872691 CCTCAACTAAAGACGCATCTCATT 59.127 41.667 0.00 0.00 32.34 2.57
195 196 4.437239 CCTCAACTAAAGACGCATCTCAT 58.563 43.478 0.00 0.00 32.34 2.90
196 197 3.849911 CCTCAACTAAAGACGCATCTCA 58.150 45.455 0.00 0.00 32.34 3.27
197 198 2.605366 GCCTCAACTAAAGACGCATCTC 59.395 50.000 0.00 0.00 32.34 2.75
198 199 2.622436 GCCTCAACTAAAGACGCATCT 58.378 47.619 0.00 0.00 36.42 2.90
199 200 1.324736 CGCCTCAACTAAAGACGCATC 59.675 52.381 0.00 0.00 0.00 3.91
200 201 1.067142 TCGCCTCAACTAAAGACGCAT 60.067 47.619 0.00 0.00 0.00 4.73
201 202 0.315886 TCGCCTCAACTAAAGACGCA 59.684 50.000 0.00 0.00 0.00 5.24
202 203 0.992802 CTCGCCTCAACTAAAGACGC 59.007 55.000 0.00 0.00 0.00 5.19
203 204 1.986378 CACTCGCCTCAACTAAAGACG 59.014 52.381 0.00 0.00 0.00 4.18
204 205 3.299340 TCACTCGCCTCAACTAAAGAC 57.701 47.619 0.00 0.00 0.00 3.01
205 206 3.861131 GCTTCACTCGCCTCAACTAAAGA 60.861 47.826 0.00 0.00 0.00 2.52
206 207 2.413453 GCTTCACTCGCCTCAACTAAAG 59.587 50.000 0.00 0.00 0.00 1.85
207 208 2.413837 GCTTCACTCGCCTCAACTAAA 58.586 47.619 0.00 0.00 0.00 1.85
208 209 1.337823 GGCTTCACTCGCCTCAACTAA 60.338 52.381 0.00 0.00 44.17 2.24
209 210 0.246635 GGCTTCACTCGCCTCAACTA 59.753 55.000 0.00 0.00 44.17 2.24
210 211 1.004440 GGCTTCACTCGCCTCAACT 60.004 57.895 0.00 0.00 44.17 3.16
211 212 2.383527 CGGCTTCACTCGCCTCAAC 61.384 63.158 0.00 0.00 45.37 3.18
212 213 2.048222 CGGCTTCACTCGCCTCAA 60.048 61.111 0.00 0.00 45.37 3.02
213 214 4.069232 CCGGCTTCACTCGCCTCA 62.069 66.667 0.00 0.00 45.37 3.86
214 215 2.017559 ATACCGGCTTCACTCGCCTC 62.018 60.000 0.00 0.00 45.37 4.70
215 216 1.614241 AATACCGGCTTCACTCGCCT 61.614 55.000 0.00 0.00 45.37 5.52
216 217 1.152383 GAATACCGGCTTCACTCGCC 61.152 60.000 0.00 0.00 44.11 5.54
217 218 1.152383 GGAATACCGGCTTCACTCGC 61.152 60.000 16.64 0.00 0.00 5.03
218 219 0.174845 TGGAATACCGGCTTCACTCG 59.825 55.000 16.64 0.00 39.42 4.18
219 220 2.622064 ATGGAATACCGGCTTCACTC 57.378 50.000 16.64 3.37 39.42 3.51
220 221 3.016736 CAAATGGAATACCGGCTTCACT 58.983 45.455 16.64 3.31 39.42 3.41
221 222 2.752903 ACAAATGGAATACCGGCTTCAC 59.247 45.455 16.64 8.54 39.42 3.18
222 223 3.080300 ACAAATGGAATACCGGCTTCA 57.920 42.857 16.64 1.37 39.42 3.02
223 224 4.450082 AAACAAATGGAATACCGGCTTC 57.550 40.909 0.00 4.90 39.42 3.86
224 225 4.282195 TGAAAACAAATGGAATACCGGCTT 59.718 37.500 0.00 0.00 39.42 4.35
225 226 3.829601 TGAAAACAAATGGAATACCGGCT 59.170 39.130 0.00 0.00 39.42 5.52
226 227 3.924073 GTGAAAACAAATGGAATACCGGC 59.076 43.478 0.00 0.00 39.42 6.13
227 228 4.162812 CGTGAAAACAAATGGAATACCGG 58.837 43.478 0.00 0.00 39.42 5.28
228 229 4.789784 ACGTGAAAACAAATGGAATACCG 58.210 39.130 0.00 0.00 39.42 4.02
229 230 7.471657 AAAACGTGAAAACAAATGGAATACC 57.528 32.000 0.00 0.00 0.00 2.73
277 278 8.585018 AGTGGAGAAGAAGAAAGAAAACAAAAA 58.415 29.630 0.00 0.00 0.00 1.94
278 279 8.122472 AGTGGAGAAGAAGAAAGAAAACAAAA 57.878 30.769 0.00 0.00 0.00 2.44
279 280 7.703058 AGTGGAGAAGAAGAAAGAAAACAAA 57.297 32.000 0.00 0.00 0.00 2.83
280 281 7.703058 AAGTGGAGAAGAAGAAAGAAAACAA 57.297 32.000 0.00 0.00 0.00 2.83
281 282 8.980481 ATAAGTGGAGAAGAAGAAAGAAAACA 57.020 30.769 0.00 0.00 0.00 2.83
282 283 9.670719 CAATAAGTGGAGAAGAAGAAAGAAAAC 57.329 33.333 0.00 0.00 0.00 2.43
283 284 9.408648 ACAATAAGTGGAGAAGAAGAAAGAAAA 57.591 29.630 0.00 0.00 0.00 2.29
284 285 8.980481 ACAATAAGTGGAGAAGAAGAAAGAAA 57.020 30.769 0.00 0.00 0.00 2.52
285 286 8.980481 AACAATAAGTGGAGAAGAAGAAAGAA 57.020 30.769 0.00 0.00 0.00 2.52
286 287 8.980481 AAACAATAAGTGGAGAAGAAGAAAGA 57.020 30.769 0.00 0.00 0.00 2.52
288 289 9.847224 ACTAAACAATAAGTGGAGAAGAAGAAA 57.153 29.630 0.00 0.00 0.00 2.52
289 290 9.847224 AACTAAACAATAAGTGGAGAAGAAGAA 57.153 29.630 0.00 0.00 0.00 2.52
290 291 9.847224 AAACTAAACAATAAGTGGAGAAGAAGA 57.153 29.630 0.00 0.00 0.00 2.87
293 294 9.063615 GGAAAACTAAACAATAAGTGGAGAAGA 57.936 33.333 0.00 0.00 0.00 2.87
294 295 9.067986 AGGAAAACTAAACAATAAGTGGAGAAG 57.932 33.333 0.00 0.00 0.00 2.85
295 296 8.990163 AGGAAAACTAAACAATAAGTGGAGAA 57.010 30.769 0.00 0.00 0.00 2.87
296 297 8.990163 AAGGAAAACTAAACAATAAGTGGAGA 57.010 30.769 0.00 0.00 0.00 3.71
299 300 9.256477 GGAAAAGGAAAACTAAACAATAAGTGG 57.744 33.333 0.00 0.00 0.00 4.00
300 301 9.810545 TGGAAAAGGAAAACTAAACAATAAGTG 57.189 29.630 0.00 0.00 0.00 3.16
306 307 9.952030 AAAAGATGGAAAAGGAAAACTAAACAA 57.048 25.926 0.00 0.00 0.00 2.83
307 308 9.952030 AAAAAGATGGAAAAGGAAAACTAAACA 57.048 25.926 0.00 0.00 0.00 2.83
309 310 9.389755 CCAAAAAGATGGAAAAGGAAAACTAAA 57.610 29.630 0.00 0.00 43.54 1.85
310 311 7.497579 GCCAAAAAGATGGAAAAGGAAAACTAA 59.502 33.333 0.00 0.00 43.54 2.24
311 312 6.989759 GCCAAAAAGATGGAAAAGGAAAACTA 59.010 34.615 0.00 0.00 43.54 2.24
312 313 5.822519 GCCAAAAAGATGGAAAAGGAAAACT 59.177 36.000 0.00 0.00 43.54 2.66
313 314 5.822519 AGCCAAAAAGATGGAAAAGGAAAAC 59.177 36.000 0.00 0.00 43.54 2.43
314 315 6.000246 AGCCAAAAAGATGGAAAAGGAAAA 58.000 33.333 0.00 0.00 43.54 2.29
315 316 5.628797 AGCCAAAAAGATGGAAAAGGAAA 57.371 34.783 0.00 0.00 43.54 3.13
316 317 5.628797 AAGCCAAAAAGATGGAAAAGGAA 57.371 34.783 0.00 0.00 43.54 3.36
317 318 5.366477 AGAAAGCCAAAAAGATGGAAAAGGA 59.634 36.000 0.00 0.00 43.54 3.36
318 319 5.614308 AGAAAGCCAAAAAGATGGAAAAGG 58.386 37.500 0.00 0.00 43.54 3.11
319 320 7.558161 AAAGAAAGCCAAAAAGATGGAAAAG 57.442 32.000 0.00 0.00 43.54 2.27
320 321 7.392953 ACAAAAGAAAGCCAAAAAGATGGAAAA 59.607 29.630 0.00 0.00 43.54 2.29
321 322 6.883756 ACAAAAGAAAGCCAAAAAGATGGAAA 59.116 30.769 0.00 0.00 43.54 3.13
322 323 6.413892 ACAAAAGAAAGCCAAAAAGATGGAA 58.586 32.000 0.00 0.00 43.54 3.53
323 324 5.988287 ACAAAAGAAAGCCAAAAAGATGGA 58.012 33.333 0.00 0.00 43.54 3.41
324 325 6.682423 AACAAAAGAAAGCCAAAAAGATGG 57.318 33.333 0.00 0.00 43.70 3.51
333 334 9.665719 AGAAGAAAATAAAACAAAAGAAAGCCA 57.334 25.926 0.00 0.00 0.00 4.75
383 384 6.652481 TGTTGAACAAGCATTTGAAGGAAAAA 59.348 30.769 0.00 0.00 37.73 1.94
384 385 6.169094 TGTTGAACAAGCATTTGAAGGAAAA 58.831 32.000 0.00 0.00 37.73 2.29
385 386 5.728471 TGTTGAACAAGCATTTGAAGGAAA 58.272 33.333 0.00 0.00 37.73 3.13
386 387 5.336150 TGTTGAACAAGCATTTGAAGGAA 57.664 34.783 0.00 0.00 37.73 3.36
387 388 4.998671 TGTTGAACAAGCATTTGAAGGA 57.001 36.364 0.00 0.00 37.73 3.36
388 389 6.607735 AAATGTTGAACAAGCATTTGAAGG 57.392 33.333 0.62 0.00 40.14 3.46
411 412 9.598517 AGAAAATGCTGAACAAGTATTTGAAAA 57.401 25.926 4.81 0.00 46.69 2.29
412 413 9.598517 AAGAAAATGCTGAACAAGTATTTGAAA 57.401 25.926 4.81 0.00 46.69 2.69
477 478 9.688592 AAAAATGTTGAACAAGCATTTGAAAAA 57.311 22.222 0.62 0.00 40.58 1.94
487 488 9.777843 CGACTATTTTAAAAATGTTGAACAAGC 57.222 29.630 0.62 0.00 0.00 4.01
491 492 9.968620 CGAACGACTATTTTAAAAATGTTGAAC 57.031 29.630 21.02 15.26 0.00 3.18
492 493 9.719279 ACGAACGACTATTTTAAAAATGTTGAA 57.281 25.926 21.02 0.00 0.00 2.69
493 494 9.160576 CACGAACGACTATTTTAAAAATGTTGA 57.839 29.630 21.02 0.00 0.00 3.18
494 495 9.160576 TCACGAACGACTATTTTAAAAATGTTG 57.839 29.630 4.44 12.11 0.00 3.33
495 496 9.719279 TTCACGAACGACTATTTTAAAAATGTT 57.281 25.926 4.44 5.69 0.00 2.71
496 497 9.887406 ATTCACGAACGACTATTTTAAAAATGT 57.113 25.926 4.44 6.79 0.00 2.71
501 502 9.932699 TGAAAATTCACGAACGACTATTTTAAA 57.067 25.926 0.14 0.00 31.01 1.52
505 506 9.702726 CATATGAAAATTCACGAACGACTATTT 57.297 29.630 0.00 1.32 40.49 1.40
506 507 8.879759 ACATATGAAAATTCACGAACGACTATT 58.120 29.630 10.38 0.00 40.49 1.73
507 508 8.420374 ACATATGAAAATTCACGAACGACTAT 57.580 30.769 10.38 0.00 40.49 2.12
508 509 7.821595 ACATATGAAAATTCACGAACGACTA 57.178 32.000 10.38 0.00 40.49 2.59
509 510 6.721571 ACATATGAAAATTCACGAACGACT 57.278 33.333 10.38 0.00 40.49 4.18
510 511 9.485591 AATAACATATGAAAATTCACGAACGAC 57.514 29.630 10.38 0.00 40.49 4.34
511 512 9.484326 CAATAACATATGAAAATTCACGAACGA 57.516 29.630 10.38 0.00 40.49 3.85
512 513 8.733128 CCAATAACATATGAAAATTCACGAACG 58.267 33.333 10.38 0.00 40.49 3.95
513 514 9.781834 TCCAATAACATATGAAAATTCACGAAC 57.218 29.630 10.38 0.00 40.49 3.95
625 626 7.201857 GCTGGAAGGCACATTCTCTATATTTTT 60.202 37.037 0.00 0.00 0.00 1.94
626 627 6.264067 GCTGGAAGGCACATTCTCTATATTTT 59.736 38.462 0.00 0.00 0.00 1.82
627 628 5.767168 GCTGGAAGGCACATTCTCTATATTT 59.233 40.000 0.00 0.00 0.00 1.40
628 629 5.312079 GCTGGAAGGCACATTCTCTATATT 58.688 41.667 0.00 0.00 0.00 1.28
629 630 4.562347 CGCTGGAAGGCACATTCTCTATAT 60.562 45.833 0.00 0.00 0.00 0.86
630 631 3.243873 CGCTGGAAGGCACATTCTCTATA 60.244 47.826 0.00 0.00 0.00 1.31
631 632 2.484417 CGCTGGAAGGCACATTCTCTAT 60.484 50.000 0.00 0.00 0.00 1.98
632 633 1.134699 CGCTGGAAGGCACATTCTCTA 60.135 52.381 0.00 0.00 0.00 2.43
633 634 0.392193 CGCTGGAAGGCACATTCTCT 60.392 55.000 0.00 0.00 0.00 3.10
634 635 0.391661 TCGCTGGAAGGCACATTCTC 60.392 55.000 0.00 0.00 0.00 2.87
635 636 0.036732 TTCGCTGGAAGGCACATTCT 59.963 50.000 0.00 0.00 0.00 2.40
636 637 0.169009 GTTCGCTGGAAGGCACATTC 59.831 55.000 0.00 0.00 31.49 2.67
637 638 1.244019 GGTTCGCTGGAAGGCACATT 61.244 55.000 0.00 0.00 31.49 2.71
638 639 1.675641 GGTTCGCTGGAAGGCACAT 60.676 57.895 0.00 0.00 31.49 3.21
639 640 2.281484 GGTTCGCTGGAAGGCACA 60.281 61.111 0.00 0.00 31.49 4.57
640 641 2.032681 AGGTTCGCTGGAAGGCAC 59.967 61.111 0.00 0.00 31.49 5.01
641 642 2.032528 CAGGTTCGCTGGAAGGCA 59.967 61.111 0.00 0.00 31.49 4.75
642 643 2.747855 CCAGGTTCGCTGGAAGGC 60.748 66.667 1.59 0.00 44.39 4.35
643 644 2.045926 CCCAGGTTCGCTGGAAGG 60.046 66.667 8.95 0.00 44.39 3.46
644 645 2.747855 GCCCAGGTTCGCTGGAAG 60.748 66.667 8.95 0.00 44.39 3.46
645 646 4.344865 GGCCCAGGTTCGCTGGAA 62.345 66.667 8.95 0.00 44.39 3.53
663 664 3.446570 GTCAGCAGCACATGGGCC 61.447 66.667 18.42 1.33 0.00 5.80
664 665 2.360852 AGTCAGCAGCACATGGGC 60.361 61.111 13.49 13.49 0.00 5.36
665 666 0.743701 GAGAGTCAGCAGCACATGGG 60.744 60.000 0.00 0.00 0.00 4.00
666 667 0.249676 AGAGAGTCAGCAGCACATGG 59.750 55.000 0.00 0.00 0.00 3.66
667 668 1.205179 AGAGAGAGTCAGCAGCACATG 59.795 52.381 0.00 0.00 0.00 3.21
668 669 1.477700 GAGAGAGAGTCAGCAGCACAT 59.522 52.381 0.00 0.00 0.00 3.21
669 670 0.887247 GAGAGAGAGTCAGCAGCACA 59.113 55.000 0.00 0.00 0.00 4.57
670 671 1.135315 CAGAGAGAGAGTCAGCAGCAC 60.135 57.143 0.00 0.00 0.00 4.40
671 672 1.175654 CAGAGAGAGAGTCAGCAGCA 58.824 55.000 0.00 0.00 0.00 4.41
672 673 0.457035 CCAGAGAGAGAGTCAGCAGC 59.543 60.000 0.00 0.00 0.00 5.25
673 674 1.745087 GTCCAGAGAGAGAGTCAGCAG 59.255 57.143 0.00 0.00 0.00 4.24
674 675 1.832883 GTCCAGAGAGAGAGTCAGCA 58.167 55.000 0.00 0.00 0.00 4.41
675 676 0.732571 CGTCCAGAGAGAGAGTCAGC 59.267 60.000 0.00 0.00 0.00 4.26
676 677 0.732571 GCGTCCAGAGAGAGAGTCAG 59.267 60.000 0.00 0.00 0.00 3.51
677 678 1.021920 CGCGTCCAGAGAGAGAGTCA 61.022 60.000 0.00 0.00 0.00 3.41
678 679 0.741574 TCGCGTCCAGAGAGAGAGTC 60.742 60.000 5.77 0.00 0.00 3.36
679 680 1.297039 TCGCGTCCAGAGAGAGAGT 59.703 57.895 5.77 0.00 0.00 3.24
680 681 4.210307 TCGCGTCCAGAGAGAGAG 57.790 61.111 5.77 0.00 0.00 3.20
704 705 4.738998 TTGATGCTGCGGGTGGGG 62.739 66.667 0.00 0.00 0.00 4.96
705 706 3.443045 GTTGATGCTGCGGGTGGG 61.443 66.667 0.00 0.00 0.00 4.61
706 707 3.803082 CGTTGATGCTGCGGGTGG 61.803 66.667 0.00 0.00 0.00 4.61
707 708 2.741985 TCGTTGATGCTGCGGGTG 60.742 61.111 0.00 0.00 0.00 4.61
708 709 2.434884 CTCGTTGATGCTGCGGGT 60.435 61.111 0.00 0.00 0.00 5.28
709 710 3.869272 GCTCGTTGATGCTGCGGG 61.869 66.667 0.00 0.00 0.00 6.13
710 711 2.301902 GAAGCTCGTTGATGCTGCGG 62.302 60.000 0.00 0.00 39.71 5.69
711 712 1.059994 GAAGCTCGTTGATGCTGCG 59.940 57.895 0.00 0.00 39.71 5.18
712 713 1.300971 TGGAAGCTCGTTGATGCTGC 61.301 55.000 0.00 0.00 39.71 5.25
713 714 1.329906 GATGGAAGCTCGTTGATGCTG 59.670 52.381 0.00 0.00 39.71 4.41
714 715 1.661341 GATGGAAGCTCGTTGATGCT 58.339 50.000 0.00 0.00 41.82 3.79
715 716 0.659957 GGATGGAAGCTCGTTGATGC 59.340 55.000 0.00 0.00 0.00 3.91
716 717 1.303309 GGGATGGAAGCTCGTTGATG 58.697 55.000 0.00 0.00 0.00 3.07
717 718 0.911769 TGGGATGGAAGCTCGTTGAT 59.088 50.000 0.00 0.00 0.00 2.57
718 719 0.036388 GTGGGATGGAAGCTCGTTGA 60.036 55.000 0.00 0.00 0.00 3.18
719 720 1.361668 CGTGGGATGGAAGCTCGTTG 61.362 60.000 0.00 0.00 0.00 4.10
720 721 1.079127 CGTGGGATGGAAGCTCGTT 60.079 57.895 0.00 0.00 0.00 3.85
721 722 2.579201 CGTGGGATGGAAGCTCGT 59.421 61.111 0.00 0.00 0.00 4.18
722 723 2.032860 ATCCGTGGGATGGAAGCTCG 62.033 60.000 0.00 0.00 41.43 5.03
723 724 0.250081 GATCCGTGGGATGGAAGCTC 60.250 60.000 1.07 0.00 43.27 4.09
724 725 1.700042 GGATCCGTGGGATGGAAGCT 61.700 60.000 1.07 0.00 43.27 3.74
725 726 1.227973 GGATCCGTGGGATGGAAGC 60.228 63.158 1.07 0.00 43.27 3.86
726 727 1.069765 CGGATCCGTGGGATGGAAG 59.930 63.158 26.35 0.00 43.27 3.46
727 728 3.101796 GCGGATCCGTGGGATGGAA 62.102 63.158 33.33 0.00 43.27 3.53
728 729 3.546543 GCGGATCCGTGGGATGGA 61.547 66.667 33.33 0.00 43.27 3.41
729 730 4.969196 CGCGGATCCGTGGGATGG 62.969 72.222 34.87 13.08 43.27 3.51
736 737 4.796231 GTGAGCACGCGGATCCGT 62.796 66.667 33.33 15.12 43.11 4.69
763 764 3.165875 GAGAATGGACGGATGGGATCTA 58.834 50.000 0.00 0.00 0.00 1.98
864 871 1.021968 GGATCGGGAATTTTCGTGGG 58.978 55.000 2.24 0.00 0.00 4.61
867 874 0.106868 GGGGGATCGGGAATTTTCGT 60.107 55.000 2.24 0.00 0.00 3.85
1553 1613 5.551760 AACAGAGGACAAAATTAGCATCG 57.448 39.130 0.00 0.00 0.00 3.84
1555 1615 5.244626 AGCAAACAGAGGACAAAATTAGCAT 59.755 36.000 0.00 0.00 0.00 3.79
2196 2694 2.092429 GGCCTTCACCTTGTGATATCCA 60.092 50.000 0.00 0.00 42.40 3.41
2221 2721 7.765695 AAGGAAAAGCTCATTTGTATCAGAA 57.234 32.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.