Multiple sequence alignment - TraesCS7A01G102200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G102200 chr7A 100.000 3989 0 0 1 3989 62849779 62845791 0.000000e+00 7367.0
1 TraesCS7A01G102200 chr7A 98.148 54 1 0 242 295 62849484 62849431 1.180000e-15 95.3
2 TraesCS7A01G102200 chr7A 98.148 54 1 0 296 349 62849538 62849485 1.180000e-15 95.3
3 TraesCS7A01G102200 chr7A 85.185 54 8 0 566 619 43251561 43251508 5.570000e-04 56.5
4 TraesCS7A01G102200 chr7D 95.377 2228 92 6 781 3000 58495225 58493001 0.000000e+00 3533.0
5 TraesCS7A01G102200 chr7D 84.857 350 34 11 3043 3374 58493003 58492655 6.390000e-88 335.0
6 TraesCS7A01G102200 chr7D 89.496 238 22 3 3373 3609 58492605 58492370 8.380000e-77 298.0
7 TraesCS7A01G102200 chr7D 84.639 319 20 12 1 294 58495792 58495478 1.400000e-74 291.0
8 TraesCS7A01G102200 chr7D 92.208 77 6 0 3910 3986 58491912 58491836 4.210000e-20 110.0
9 TraesCS7A01G102200 chr7D 94.915 59 3 0 296 354 58495530 58495472 4.240000e-15 93.5
10 TraesCS7A01G102200 chr4A 94.215 2230 107 11 781 2998 674942932 674940713 0.000000e+00 3384.0
11 TraesCS7A01G102200 chr4A 85.201 946 86 23 3057 3986 674940712 674939805 0.000000e+00 922.0
12 TraesCS7A01G102200 chr4A 92.920 113 8 0 1 113 674943669 674943557 8.870000e-37 165.0
13 TraesCS7A01G102200 chr4D 83.333 912 115 25 2759 3655 432424597 432425486 0.000000e+00 808.0
14 TraesCS7A01G102200 chr4D 83.865 502 44 6 1862 2356 432421284 432421755 1.020000e-120 444.0
15 TraesCS7A01G102200 chr4B 82.580 597 82 16 2759 3344 530199200 530199785 1.280000e-139 507.0
16 TraesCS7A01G102200 chr4B 85.580 319 40 6 3340 3655 530204260 530204575 2.970000e-86 329.0
17 TraesCS7A01G102200 chr4B 92.683 82 6 0 2158 2239 530198808 530198889 7.000000e-23 119.0
18 TraesCS7A01G102200 chr4B 97.959 49 1 0 2308 2356 530198889 530198937 7.100000e-13 86.1
19 TraesCS7A01G102200 chr4B 93.220 59 3 1 564 621 568365708 568365650 7.100000e-13 86.1
20 TraesCS7A01G102200 chr4B 86.441 59 7 1 564 621 673070615 673070557 3.330000e-06 63.9
21 TraesCS7A01G102200 chr1D 89.216 204 16 2 371 568 38563079 38562876 2.380000e-62 250.0
22 TraesCS7A01G102200 chr2A 88.835 206 15 2 371 568 729555242 729555037 3.080000e-61 246.0
23 TraesCS7A01G102200 chr6B 88.725 204 17 2 371 568 68112107 68111904 1.110000e-60 244.0
24 TraesCS7A01G102200 chr6A 88.889 198 20 1 368 565 10703937 10704132 3.980000e-60 243.0
25 TraesCS7A01G102200 chr6A 84.483 58 6 3 564 619 404460753 404460809 2.000000e-03 54.7
26 TraesCS7A01G102200 chr3D 88.350 206 16 2 368 565 590751754 590751959 1.430000e-59 241.0
27 TraesCS7A01G102200 chr5D 87.442 215 17 4 359 565 535008269 535008481 5.150000e-59 239.0
28 TraesCS7A01G102200 chr5D 86.441 59 7 1 564 621 256438372 256438314 3.330000e-06 63.9
29 TraesCS7A01G102200 chr5B 88.384 198 19 1 368 565 696341172 696341365 6.660000e-58 235.0
30 TraesCS7A01G102200 chr1B 88.442 199 18 2 367 565 497823326 497823519 6.660000e-58 235.0
31 TraesCS7A01G102200 chr5A 87.204 211 16 5 363 565 647359550 647359757 3.100000e-56 230.0
32 TraesCS7A01G102200 chr5A 86.792 53 6 1 567 619 426945551 426945602 1.550000e-04 58.4
33 TraesCS7A01G102200 chrUn 89.831 59 5 1 564 621 57369802 57369744 1.540000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G102200 chr7A 62845791 62849779 3988 True 2519.200000 7367 98.765333 1 3989 3 chr7A.!!$R2 3988
1 TraesCS7A01G102200 chr7D 58491836 58495792 3956 True 776.750000 3533 90.248667 1 3986 6 chr7D.!!$R1 3985
2 TraesCS7A01G102200 chr4A 674939805 674943669 3864 True 1490.333333 3384 90.778667 1 3986 3 chr4A.!!$R1 3985
3 TraesCS7A01G102200 chr4D 432421284 432425486 4202 False 626.000000 808 83.599000 1862 3655 2 chr4D.!!$F1 1793
4 TraesCS7A01G102200 chr4B 530198808 530199785 977 False 237.366667 507 91.074000 2158 3344 3 chr4B.!!$F2 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 504 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.0 0.00 0.0 0.00 3.24 F
592 629 0.106167 ACCCTCGTAGGCTGAGCATA 60.106 55.0 6.82 0.0 32.73 3.14 F
1803 2225 0.253160 TGGGAAGGAGGGTGCATAGT 60.253 55.0 0.00 0.0 0.00 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 2107 0.667993 CACCATCCTGCAAAACACGT 59.332 50.0 0.0 0.0 0.00 4.49 R
2127 2550 1.291877 GCACACTCACAAGGGTAGCG 61.292 60.0 0.0 0.0 36.87 4.26 R
3000 6039 0.597568 CAAGGACGAAAGCATTGCCA 59.402 50.0 4.7 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.473080 GCAGCTGGTTCCAAGCAAAAA 60.473 47.619 17.12 0.00 35.79 1.94
58 59 5.184711 TGCTTGCAATCTGTATGTGTCATA 58.815 37.500 0.00 0.00 0.00 2.15
117 118 2.469847 CACAATGGTGCGACGTCG 59.530 61.111 32.57 32.57 38.37 5.12
118 119 2.028484 ACAATGGTGCGACGTCGT 59.972 55.556 35.48 15.78 42.22 4.34
133 134 2.357517 CGTGCTCCGCTCCTGTTT 60.358 61.111 0.00 0.00 0.00 2.83
134 135 2.671177 CGTGCTCCGCTCCTGTTTG 61.671 63.158 0.00 0.00 0.00 2.93
165 190 0.947244 GAGACAAGGCCAGTGTGTTG 59.053 55.000 16.19 7.66 0.00 3.33
171 197 3.072476 ACAAGGCCAGTGTGTTGTATAGT 59.928 43.478 5.01 0.00 31.37 2.12
189 215 8.911918 TGTATAGTCTGTTACACAAACCAAAT 57.088 30.769 0.00 0.00 37.27 2.32
190 216 9.999660 TGTATAGTCTGTTACACAAACCAAATA 57.000 29.630 0.00 0.00 37.27 1.40
230 257 6.949578 TCTTTTGTTGCTGTTGAGAAAAAG 57.050 33.333 0.00 0.00 35.49 2.27
261 298 7.277396 TGTACTGTGATTATTTAAGGGCTACC 58.723 38.462 0.00 0.00 0.00 3.18
262 299 5.365619 ACTGTGATTATTTAAGGGCTACCG 58.634 41.667 0.00 0.00 43.47 4.02
263 300 4.131596 TGTGATTATTTAAGGGCTACCGC 58.868 43.478 0.00 0.00 43.47 5.68
264 301 4.131596 GTGATTATTTAAGGGCTACCGCA 58.868 43.478 0.00 0.00 43.47 5.69
265 302 4.213482 GTGATTATTTAAGGGCTACCGCAG 59.787 45.833 0.00 0.00 43.47 5.18
276 313 2.080286 CTACCGCAGCAACAAGTAGT 57.920 50.000 0.00 0.00 0.00 2.73
277 314 1.726791 CTACCGCAGCAACAAGTAGTG 59.273 52.381 0.00 0.00 0.00 2.74
278 315 0.105964 ACCGCAGCAACAAGTAGTGA 59.894 50.000 0.00 0.00 0.00 3.41
279 316 1.270839 ACCGCAGCAACAAGTAGTGAT 60.271 47.619 0.00 0.00 0.00 3.06
280 317 1.806542 CCGCAGCAACAAGTAGTGATT 59.193 47.619 0.00 0.00 0.00 2.57
281 318 2.226437 CCGCAGCAACAAGTAGTGATTT 59.774 45.455 0.00 0.00 0.00 2.17
282 319 3.482786 CGCAGCAACAAGTAGTGATTTC 58.517 45.455 0.00 0.00 0.00 2.17
283 320 3.187227 CGCAGCAACAAGTAGTGATTTCT 59.813 43.478 0.00 0.00 0.00 2.52
284 321 4.319766 CGCAGCAACAAGTAGTGATTTCTT 60.320 41.667 0.00 0.00 0.00 2.52
285 322 5.523369 GCAGCAACAAGTAGTGATTTCTTT 58.477 37.500 0.00 0.00 0.00 2.52
286 323 5.979517 GCAGCAACAAGTAGTGATTTCTTTT 59.020 36.000 0.00 0.00 0.00 2.27
287 324 6.074676 GCAGCAACAAGTAGTGATTTCTTTTG 60.075 38.462 0.00 0.00 0.00 2.44
288 325 6.418819 CAGCAACAAGTAGTGATTTCTTTTGG 59.581 38.462 0.00 0.00 0.00 3.28
289 326 5.691754 GCAACAAGTAGTGATTTCTTTTGGG 59.308 40.000 0.00 0.00 0.00 4.12
290 327 5.453567 ACAAGTAGTGATTTCTTTTGGGC 57.546 39.130 0.00 0.00 0.00 5.36
291 328 4.892934 ACAAGTAGTGATTTCTTTTGGGCA 59.107 37.500 0.00 0.00 0.00 5.36
292 329 5.539955 ACAAGTAGTGATTTCTTTTGGGCAT 59.460 36.000 0.00 0.00 0.00 4.40
293 330 6.719370 ACAAGTAGTGATTTCTTTTGGGCATA 59.281 34.615 0.00 0.00 0.00 3.14
294 331 7.232534 ACAAGTAGTGATTTCTTTTGGGCATAA 59.767 33.333 0.00 0.00 0.00 1.90
295 332 7.961326 AGTAGTGATTTCTTTTGGGCATAAT 57.039 32.000 0.00 0.00 0.00 1.28
296 333 7.775120 AGTAGTGATTTCTTTTGGGCATAATG 58.225 34.615 0.00 0.00 0.00 1.90
297 334 6.610075 AGTGATTTCTTTTGGGCATAATGT 57.390 33.333 0.00 0.00 0.00 2.71
298 335 6.400568 AGTGATTTCTTTTGGGCATAATGTG 58.599 36.000 0.00 0.00 0.00 3.21
299 336 6.211184 AGTGATTTCTTTTGGGCATAATGTGA 59.789 34.615 0.00 0.00 0.00 3.58
300 337 7.043565 GTGATTTCTTTTGGGCATAATGTGAT 58.956 34.615 0.00 0.00 0.00 3.06
301 338 7.550196 GTGATTTCTTTTGGGCATAATGTGATT 59.450 33.333 0.00 0.00 0.00 2.57
302 339 8.756927 TGATTTCTTTTGGGCATAATGTGATTA 58.243 29.630 0.00 0.00 0.00 1.75
303 340 9.768662 GATTTCTTTTGGGCATAATGTGATTAT 57.231 29.630 0.00 0.00 35.92 1.28
305 342 9.956640 TTTCTTTTGGGCATAATGTGATTATTT 57.043 25.926 0.00 0.00 33.34 1.40
309 346 9.829507 TTTTGGGCATAATGTGATTATTTAAGG 57.170 29.630 0.00 0.00 33.34 2.69
310 347 7.537596 TGGGCATAATGTGATTATTTAAGGG 57.462 36.000 0.00 0.00 33.34 3.95
311 348 6.014669 TGGGCATAATGTGATTATTTAAGGGC 60.015 38.462 0.00 0.00 33.34 5.19
312 349 6.211384 GGGCATAATGTGATTATTTAAGGGCT 59.789 38.462 0.00 0.00 33.34 5.19
313 350 7.396055 GGGCATAATGTGATTATTTAAGGGCTA 59.604 37.037 0.00 0.00 33.34 3.93
348 385 4.527816 AGCAGTGATTTCTTTTGGGCATAA 59.472 37.500 0.00 0.00 0.00 1.90
357 394 3.255642 TCTTTTGGGCATAACAGCAAGTC 59.744 43.478 0.00 0.00 35.83 3.01
372 409 4.452455 CAGCAAGTCGGTAATCACTTCTTT 59.548 41.667 0.00 0.00 30.06 2.52
373 410 5.049405 CAGCAAGTCGGTAATCACTTCTTTT 60.049 40.000 0.00 0.00 30.06 2.27
374 411 5.531287 AGCAAGTCGGTAATCACTTCTTTTT 59.469 36.000 0.00 0.00 30.06 1.94
375 412 5.625311 GCAAGTCGGTAATCACTTCTTTTTG 59.375 40.000 0.00 0.00 30.06 2.44
377 414 6.787085 AGTCGGTAATCACTTCTTTTTGAG 57.213 37.500 0.00 0.00 0.00 3.02
378 415 5.179555 AGTCGGTAATCACTTCTTTTTGAGC 59.820 40.000 0.00 0.00 0.00 4.26
379 416 5.049680 GTCGGTAATCACTTCTTTTTGAGCA 60.050 40.000 0.00 0.00 0.00 4.26
380 417 5.705441 TCGGTAATCACTTCTTTTTGAGCAT 59.295 36.000 0.00 0.00 0.00 3.79
381 418 6.024049 CGGTAATCACTTCTTTTTGAGCATC 58.976 40.000 0.00 0.00 0.00 3.91
392 429 3.721625 TGAGCATCAGTACAGACGC 57.278 52.632 0.00 0.00 42.56 5.19
393 430 0.887933 TGAGCATCAGTACAGACGCA 59.112 50.000 9.04 0.00 42.56 5.24
394 431 1.272212 TGAGCATCAGTACAGACGCAA 59.728 47.619 9.04 0.00 42.56 4.85
395 432 1.923204 GAGCATCAGTACAGACGCAAG 59.077 52.381 9.04 0.00 38.40 4.01
396 433 0.371645 GCATCAGTACAGACGCAAGC 59.628 55.000 1.11 0.00 45.62 4.01
397 434 0.642291 CATCAGTACAGACGCAAGCG 59.358 55.000 13.50 13.50 46.03 4.68
398 435 1.078759 ATCAGTACAGACGCAAGCGC 61.079 55.000 15.09 0.00 44.19 5.92
399 436 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
400 437 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
401 438 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
402 439 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
403 440 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
404 441 0.803768 ACAGACGCAAGCGCTCATAG 60.804 55.000 12.06 5.40 44.19 2.23
405 442 0.526310 CAGACGCAAGCGCTCATAGA 60.526 55.000 12.06 0.00 44.19 1.98
406 443 0.387202 AGACGCAAGCGCTCATAGAT 59.613 50.000 12.06 0.00 44.19 1.98
407 444 1.609072 AGACGCAAGCGCTCATAGATA 59.391 47.619 12.06 0.00 44.19 1.98
408 445 1.716581 GACGCAAGCGCTCATAGATAC 59.283 52.381 12.06 0.00 44.19 2.24
409 446 1.067060 ACGCAAGCGCTCATAGATACA 59.933 47.619 12.06 0.00 44.19 2.29
410 447 1.453524 CGCAAGCGCTCATAGATACAC 59.546 52.381 12.06 0.00 35.30 2.90
411 448 2.748605 GCAAGCGCTCATAGATACACT 58.251 47.619 12.06 0.00 34.30 3.55
412 449 3.126831 GCAAGCGCTCATAGATACACTT 58.873 45.455 12.06 0.00 34.30 3.16
413 450 4.299155 GCAAGCGCTCATAGATACACTTA 58.701 43.478 12.06 0.00 34.30 2.24
414 451 4.149046 GCAAGCGCTCATAGATACACTTAC 59.851 45.833 12.06 0.00 34.30 2.34
415 452 4.506886 AGCGCTCATAGATACACTTACC 57.493 45.455 2.64 0.00 0.00 2.85
416 453 3.256136 AGCGCTCATAGATACACTTACCC 59.744 47.826 2.64 0.00 0.00 3.69
417 454 3.614390 GCGCTCATAGATACACTTACCCC 60.614 52.174 0.00 0.00 0.00 4.95
418 455 3.827302 CGCTCATAGATACACTTACCCCT 59.173 47.826 0.00 0.00 0.00 4.79
419 456 5.008331 CGCTCATAGATACACTTACCCCTA 58.992 45.833 0.00 0.00 0.00 3.53
420 457 5.652891 CGCTCATAGATACACTTACCCCTAT 59.347 44.000 0.00 0.00 0.00 2.57
421 458 6.404844 CGCTCATAGATACACTTACCCCTATG 60.405 46.154 0.00 0.00 36.48 2.23
422 459 6.663953 GCTCATAGATACACTTACCCCTATGA 59.336 42.308 0.00 0.00 39.72 2.15
423 460 7.178628 GCTCATAGATACACTTACCCCTATGAA 59.821 40.741 0.00 0.00 40.74 2.57
424 461 8.418597 TCATAGATACACTTACCCCTATGAAC 57.581 38.462 0.00 0.00 39.33 3.18
425 462 5.786264 AGATACACTTACCCCTATGAACG 57.214 43.478 0.00 0.00 0.00 3.95
426 463 2.685850 ACACTTACCCCTATGAACGC 57.314 50.000 0.00 0.00 0.00 4.84
427 464 1.903860 ACACTTACCCCTATGAACGCA 59.096 47.619 0.00 0.00 0.00 5.24
428 465 2.277084 CACTTACCCCTATGAACGCAC 58.723 52.381 0.00 0.00 0.00 5.34
429 466 1.903860 ACTTACCCCTATGAACGCACA 59.096 47.619 0.00 0.00 0.00 4.57
430 467 2.277084 CTTACCCCTATGAACGCACAC 58.723 52.381 0.00 0.00 0.00 3.82
431 468 1.268066 TACCCCTATGAACGCACACA 58.732 50.000 0.00 0.00 0.00 3.72
432 469 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
433 470 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
434 471 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
435 472 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
436 473 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
437 474 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
438 475 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
439 476 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
442 479 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
443 480 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
444 481 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
445 482 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
446 483 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
447 484 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
448 485 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
449 486 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
450 487 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
451 488 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
452 489 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
453 490 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
454 491 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
455 492 2.037772 CACACCCTATCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
456 493 1.625818 CACCCTATCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
457 494 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
458 495 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
459 496 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
460 497 1.821753 CTATCCCTATGAGCACCTCCG 59.178 57.143 0.00 0.00 0.00 4.63
461 498 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
462 499 0.468214 TCCCTATGAGCACCTCCGAG 60.468 60.000 0.00 0.00 0.00 4.63
463 500 0.468214 CCCTATGAGCACCTCCGAGA 60.468 60.000 0.00 0.00 0.00 4.04
464 501 0.958091 CCTATGAGCACCTCCGAGAG 59.042 60.000 0.00 0.00 0.00 3.20
465 502 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
466 503 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
467 504 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
468 505 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
469 506 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
470 507 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
471 508 0.963355 GCACCTCCGAGAGACTGAGT 60.963 60.000 0.00 0.00 0.00 3.41
472 509 1.091537 CACCTCCGAGAGACTGAGTC 58.908 60.000 3.98 3.98 0.00 3.36
473 510 0.391927 ACCTCCGAGAGACTGAGTCG 60.392 60.000 6.99 0.00 37.67 4.18
475 512 2.795297 CCGAGAGACTGAGTCGGC 59.205 66.667 6.99 3.72 46.18 5.54
476 513 2.041115 CCGAGAGACTGAGTCGGCA 61.041 63.158 6.99 0.00 46.18 5.69
477 514 1.380403 CCGAGAGACTGAGTCGGCAT 61.380 60.000 6.99 0.00 46.18 4.40
478 515 0.248417 CGAGAGACTGAGTCGGCATG 60.248 60.000 6.99 0.00 37.67 4.06
479 516 0.814457 GAGAGACTGAGTCGGCATGT 59.186 55.000 6.99 0.00 37.67 3.21
480 517 0.814457 AGAGACTGAGTCGGCATGTC 59.186 55.000 6.99 0.00 37.67 3.06
481 518 0.528017 GAGACTGAGTCGGCATGTCA 59.472 55.000 6.99 0.00 37.67 3.58
482 519 1.135915 GAGACTGAGTCGGCATGTCAT 59.864 52.381 6.99 0.00 37.67 3.06
483 520 2.359214 GAGACTGAGTCGGCATGTCATA 59.641 50.000 6.99 0.00 37.67 2.15
484 521 2.961741 AGACTGAGTCGGCATGTCATAT 59.038 45.455 6.99 0.00 37.67 1.78
485 522 3.386078 AGACTGAGTCGGCATGTCATATT 59.614 43.478 6.99 0.00 37.67 1.28
486 523 3.461061 ACTGAGTCGGCATGTCATATTG 58.539 45.455 0.00 0.00 0.00 1.90
487 524 3.132824 ACTGAGTCGGCATGTCATATTGA 59.867 43.478 0.00 0.00 0.00 2.57
488 525 4.122046 CTGAGTCGGCATGTCATATTGAA 58.878 43.478 0.00 0.00 0.00 2.69
489 526 4.512484 TGAGTCGGCATGTCATATTGAAA 58.488 39.130 0.00 0.00 0.00 2.69
490 527 5.125356 TGAGTCGGCATGTCATATTGAAAT 58.875 37.500 0.00 0.00 0.00 2.17
491 528 5.589855 TGAGTCGGCATGTCATATTGAAATT 59.410 36.000 0.00 0.00 0.00 1.82
492 529 6.095300 TGAGTCGGCATGTCATATTGAAATTT 59.905 34.615 0.00 0.00 0.00 1.82
493 530 7.281999 TGAGTCGGCATGTCATATTGAAATTTA 59.718 33.333 0.00 0.00 0.00 1.40
494 531 7.417612 AGTCGGCATGTCATATTGAAATTTAC 58.582 34.615 0.00 0.00 0.00 2.01
495 532 6.356977 GTCGGCATGTCATATTGAAATTTACG 59.643 38.462 0.00 0.00 0.00 3.18
496 533 6.258947 TCGGCATGTCATATTGAAATTTACGA 59.741 34.615 0.00 0.00 0.00 3.43
497 534 6.909895 CGGCATGTCATATTGAAATTTACGAA 59.090 34.615 0.00 0.00 0.00 3.85
498 535 7.112009 CGGCATGTCATATTGAAATTTACGAAG 59.888 37.037 0.00 0.00 0.00 3.79
500 537 8.947940 GCATGTCATATTGAAATTTACGAAGTC 58.052 33.333 0.00 0.00 43.93 3.01
501 538 9.986833 CATGTCATATTGAAATTTACGAAGTCA 57.013 29.630 0.00 0.00 43.93 3.41
511 548 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
512 549 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
513 550 1.141019 GAAGTCATCGTAGGCGCCA 59.859 57.895 31.54 12.31 38.14 5.69
514 551 0.249489 GAAGTCATCGTAGGCGCCAT 60.249 55.000 31.54 16.46 38.14 4.40
515 552 0.530650 AAGTCATCGTAGGCGCCATG 60.531 55.000 31.54 22.92 38.14 3.66
516 553 1.227263 GTCATCGTAGGCGCCATGT 60.227 57.895 31.54 11.17 38.14 3.21
517 554 1.067416 TCATCGTAGGCGCCATGTC 59.933 57.895 31.54 14.27 38.14 3.06
518 555 2.027605 ATCGTAGGCGCCATGTCG 59.972 61.111 31.54 24.74 38.14 4.35
519 556 2.782222 ATCGTAGGCGCCATGTCGT 61.782 57.895 31.54 9.39 38.14 4.34
520 557 2.679132 ATCGTAGGCGCCATGTCGTC 62.679 60.000 31.54 9.13 38.14 4.20
521 558 2.954868 GTAGGCGCCATGTCGTCG 60.955 66.667 31.54 0.00 39.34 5.12
522 559 3.135457 TAGGCGCCATGTCGTCGA 61.135 61.111 31.54 0.00 39.34 4.20
523 560 3.405592 TAGGCGCCATGTCGTCGAC 62.406 63.158 31.54 18.51 39.34 4.20
525 562 3.545481 GCGCCATGTCGTCGACAG 61.545 66.667 29.78 19.57 46.04 3.51
526 563 2.178273 CGCCATGTCGTCGACAGA 59.822 61.111 29.78 10.83 46.04 3.41
527 564 1.443702 CGCCATGTCGTCGACAGAA 60.444 57.895 29.78 10.10 46.04 3.02
528 565 1.006825 CGCCATGTCGTCGACAGAAA 61.007 55.000 29.78 9.74 46.04 2.52
529 566 0.438830 GCCATGTCGTCGACAGAAAC 59.561 55.000 29.78 16.83 46.04 2.78
530 567 1.778334 CCATGTCGTCGACAGAAACA 58.222 50.000 29.78 13.55 46.04 2.83
531 568 2.337583 CCATGTCGTCGACAGAAACAT 58.662 47.619 29.78 15.12 46.04 2.71
532 569 2.345641 CCATGTCGTCGACAGAAACATC 59.654 50.000 29.78 0.63 46.04 3.06
533 570 3.245797 CATGTCGTCGACAGAAACATCT 58.754 45.455 29.78 10.71 46.04 2.90
534 571 2.929960 TGTCGTCGACAGAAACATCTC 58.070 47.619 23.70 1.48 37.67 2.75
535 572 2.251893 GTCGTCGACAGAAACATCTCC 58.748 52.381 20.28 0.00 32.09 3.71
536 573 2.095161 GTCGTCGACAGAAACATCTCCT 60.095 50.000 20.28 0.00 32.09 3.69
537 574 2.161808 TCGTCGACAGAAACATCTCCTC 59.838 50.000 17.16 0.00 0.00 3.71
538 575 2.732597 CGTCGACAGAAACATCTCCTCC 60.733 54.545 17.16 0.00 0.00 4.30
539 576 1.825474 TCGACAGAAACATCTCCTCCC 59.175 52.381 0.00 0.00 0.00 4.30
540 577 1.550524 CGACAGAAACATCTCCTCCCA 59.449 52.381 0.00 0.00 0.00 4.37
541 578 2.675317 CGACAGAAACATCTCCTCCCAC 60.675 54.545 0.00 0.00 0.00 4.61
542 579 2.569404 GACAGAAACATCTCCTCCCACT 59.431 50.000 0.00 0.00 0.00 4.00
543 580 2.304180 ACAGAAACATCTCCTCCCACTG 59.696 50.000 0.00 0.00 0.00 3.66
544 581 2.568956 CAGAAACATCTCCTCCCACTGA 59.431 50.000 0.00 0.00 0.00 3.41
545 582 3.008375 CAGAAACATCTCCTCCCACTGAA 59.992 47.826 0.00 0.00 0.00 3.02
546 583 3.652869 AGAAACATCTCCTCCCACTGAAA 59.347 43.478 0.00 0.00 0.00 2.69
547 584 3.710209 AACATCTCCTCCCACTGAAAG 57.290 47.619 0.00 0.00 42.29 2.62
548 585 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
549 586 1.280133 CATCTCCTCCCACTGAAAGCA 59.720 52.381 0.00 0.00 37.60 3.91
550 587 0.687354 TCTCCTCCCACTGAAAGCAC 59.313 55.000 0.00 0.00 37.60 4.40
551 588 0.397941 CTCCTCCCACTGAAAGCACA 59.602 55.000 0.00 0.00 37.60 4.57
552 589 1.004044 CTCCTCCCACTGAAAGCACAT 59.996 52.381 0.00 0.00 37.60 3.21
553 590 1.003580 TCCTCCCACTGAAAGCACATC 59.996 52.381 0.00 0.00 37.60 3.06
554 591 1.081892 CTCCCACTGAAAGCACATCG 58.918 55.000 0.00 0.00 37.60 3.84
555 592 0.955428 TCCCACTGAAAGCACATCGC 60.955 55.000 0.00 0.00 37.60 4.58
556 593 1.503542 CCACTGAAAGCACATCGCC 59.496 57.895 0.00 0.00 44.04 5.54
557 594 1.133253 CACTGAAAGCACATCGCCG 59.867 57.895 0.00 0.00 44.04 6.46
558 595 1.005037 ACTGAAAGCACATCGCCGA 60.005 52.632 0.00 0.00 44.04 5.54
559 596 0.602638 ACTGAAAGCACATCGCCGAA 60.603 50.000 0.00 0.00 44.04 4.30
560 597 0.516877 CTGAAAGCACATCGCCGAAA 59.483 50.000 0.00 0.00 44.04 3.46
561 598 0.947960 TGAAAGCACATCGCCGAAAA 59.052 45.000 0.00 0.00 44.04 2.29
562 599 1.539388 TGAAAGCACATCGCCGAAAAT 59.461 42.857 0.00 0.00 44.04 1.82
563 600 2.177173 GAAAGCACATCGCCGAAAATC 58.823 47.619 0.00 0.00 44.04 2.17
564 601 0.451783 AAGCACATCGCCGAAAATCC 59.548 50.000 0.00 0.00 44.04 3.01
565 602 0.676466 AGCACATCGCCGAAAATCCA 60.676 50.000 0.00 0.00 44.04 3.41
566 603 0.248215 GCACATCGCCGAAAATCCAG 60.248 55.000 0.00 0.00 32.94 3.86
567 604 1.368641 CACATCGCCGAAAATCCAGA 58.631 50.000 0.00 0.00 0.00 3.86
568 605 1.062587 CACATCGCCGAAAATCCAGAC 59.937 52.381 0.00 0.00 0.00 3.51
569 606 1.066143 ACATCGCCGAAAATCCAGACT 60.066 47.619 0.00 0.00 0.00 3.24
570 607 2.009774 CATCGCCGAAAATCCAGACTT 58.990 47.619 0.00 0.00 0.00 3.01
571 608 1.438651 TCGCCGAAAATCCAGACTTG 58.561 50.000 0.00 0.00 0.00 3.16
572 609 1.001520 TCGCCGAAAATCCAGACTTGA 59.998 47.619 0.00 0.00 0.00 3.02
573 610 1.804151 CGCCGAAAATCCAGACTTGAA 59.196 47.619 0.00 0.00 0.00 2.69
574 611 2.412847 CGCCGAAAATCCAGACTTGAAC 60.413 50.000 0.00 0.00 0.00 3.18
575 612 2.095212 GCCGAAAATCCAGACTTGAACC 60.095 50.000 0.00 0.00 0.00 3.62
576 613 2.488153 CCGAAAATCCAGACTTGAACCC 59.512 50.000 0.00 0.00 0.00 4.11
577 614 3.412386 CGAAAATCCAGACTTGAACCCT 58.588 45.455 0.00 0.00 0.00 4.34
578 615 3.437049 CGAAAATCCAGACTTGAACCCTC 59.563 47.826 0.00 0.00 0.00 4.30
579 616 2.770164 AATCCAGACTTGAACCCTCG 57.230 50.000 0.00 0.00 0.00 4.63
580 617 1.645710 ATCCAGACTTGAACCCTCGT 58.354 50.000 0.00 0.00 0.00 4.18
581 618 2.297698 TCCAGACTTGAACCCTCGTA 57.702 50.000 0.00 0.00 0.00 3.43
582 619 2.168496 TCCAGACTTGAACCCTCGTAG 58.832 52.381 0.00 0.00 0.00 3.51
583 620 1.204941 CCAGACTTGAACCCTCGTAGG 59.795 57.143 0.00 0.00 34.30 3.18
584 621 0.896226 AGACTTGAACCCTCGTAGGC 59.104 55.000 0.00 0.00 32.73 3.93
585 622 0.896226 GACTTGAACCCTCGTAGGCT 59.104 55.000 0.00 0.00 32.73 4.58
586 623 0.608640 ACTTGAACCCTCGTAGGCTG 59.391 55.000 0.00 0.00 32.73 4.85
587 624 0.895530 CTTGAACCCTCGTAGGCTGA 59.104 55.000 0.00 0.00 32.73 4.26
588 625 0.895530 TTGAACCCTCGTAGGCTGAG 59.104 55.000 0.00 0.00 32.73 3.35
589 626 1.142097 GAACCCTCGTAGGCTGAGC 59.858 63.158 0.00 0.00 32.73 4.26
590 627 1.605058 GAACCCTCGTAGGCTGAGCA 61.605 60.000 6.82 0.00 32.73 4.26
591 628 0.978146 AACCCTCGTAGGCTGAGCAT 60.978 55.000 6.82 0.11 32.73 3.79
592 629 0.106167 ACCCTCGTAGGCTGAGCATA 60.106 55.000 6.82 0.00 32.73 3.14
593 630 0.315568 CCCTCGTAGGCTGAGCATAC 59.684 60.000 18.34 18.34 41.53 2.39
594 631 0.315568 CCTCGTAGGCTGAGCATACC 59.684 60.000 21.64 6.22 41.86 2.73
595 632 1.032794 CTCGTAGGCTGAGCATACCA 58.967 55.000 21.64 9.90 41.86 3.25
596 633 0.744874 TCGTAGGCTGAGCATACCAC 59.255 55.000 21.64 2.04 41.86 4.16
597 634 0.747255 CGTAGGCTGAGCATACCACT 59.253 55.000 21.64 3.88 41.86 4.00
598 635 1.536922 CGTAGGCTGAGCATACCACTG 60.537 57.143 21.64 5.68 41.86 3.66
599 636 1.482593 GTAGGCTGAGCATACCACTGT 59.517 52.381 17.61 0.00 39.47 3.55
600 637 0.539051 AGGCTGAGCATACCACTGTC 59.461 55.000 6.82 0.00 0.00 3.51
601 638 0.462759 GGCTGAGCATACCACTGTCC 60.463 60.000 6.82 0.00 0.00 4.02
602 639 0.462759 GCTGAGCATACCACTGTCCC 60.463 60.000 0.00 0.00 0.00 4.46
603 640 1.198713 CTGAGCATACCACTGTCCCT 58.801 55.000 0.00 0.00 0.00 4.20
604 641 1.137872 CTGAGCATACCACTGTCCCTC 59.862 57.143 0.00 0.00 0.00 4.30
605 642 1.273267 TGAGCATACCACTGTCCCTCT 60.273 52.381 0.00 0.00 0.00 3.69
606 643 2.024369 TGAGCATACCACTGTCCCTCTA 60.024 50.000 0.00 0.00 0.00 2.43
607 644 3.031736 GAGCATACCACTGTCCCTCTAA 58.968 50.000 0.00 0.00 0.00 2.10
608 645 2.766828 AGCATACCACTGTCCCTCTAAC 59.233 50.000 0.00 0.00 0.00 2.34
609 646 2.158943 GCATACCACTGTCCCTCTAACC 60.159 54.545 0.00 0.00 0.00 2.85
610 647 3.104512 CATACCACTGTCCCTCTAACCA 58.895 50.000 0.00 0.00 0.00 3.67
611 648 2.344093 ACCACTGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
612 649 2.188817 ACCACTGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
613 650 2.225650 ACCACTGTCCCTCTAACCATCT 60.226 50.000 0.00 0.00 0.00 2.90
614 651 3.012502 ACCACTGTCCCTCTAACCATCTA 59.987 47.826 0.00 0.00 0.00 1.98
615 652 4.030913 CCACTGTCCCTCTAACCATCTAA 58.969 47.826 0.00 0.00 0.00 2.10
616 653 4.141914 CCACTGTCCCTCTAACCATCTAAC 60.142 50.000 0.00 0.00 0.00 2.34
617 654 4.031611 ACTGTCCCTCTAACCATCTAACC 58.968 47.826 0.00 0.00 0.00 2.85
618 655 4.030913 CTGTCCCTCTAACCATCTAACCA 58.969 47.826 0.00 0.00 0.00 3.67
619 656 3.773119 TGTCCCTCTAACCATCTAACCAC 59.227 47.826 0.00 0.00 0.00 4.16
620 657 3.773119 GTCCCTCTAACCATCTAACCACA 59.227 47.826 0.00 0.00 0.00 4.17
621 658 3.773119 TCCCTCTAACCATCTAACCACAC 59.227 47.826 0.00 0.00 0.00 3.82
622 659 3.775316 CCCTCTAACCATCTAACCACACT 59.225 47.826 0.00 0.00 0.00 3.55
623 660 4.225267 CCCTCTAACCATCTAACCACACTT 59.775 45.833 0.00 0.00 0.00 3.16
624 661 5.420409 CCTCTAACCATCTAACCACACTTC 58.580 45.833 0.00 0.00 0.00 3.01
625 662 5.187967 CCTCTAACCATCTAACCACACTTCT 59.812 44.000 0.00 0.00 0.00 2.85
626 663 6.295916 CCTCTAACCATCTAACCACACTTCTT 60.296 42.308 0.00 0.00 0.00 2.52
627 664 6.698380 TCTAACCATCTAACCACACTTCTTC 58.302 40.000 0.00 0.00 0.00 2.87
628 665 3.926616 ACCATCTAACCACACTTCTTCG 58.073 45.455 0.00 0.00 0.00 3.79
629 666 2.673368 CCATCTAACCACACTTCTTCGC 59.327 50.000 0.00 0.00 0.00 4.70
635 672 4.385358 AACCACACTTCTTCGCAAAAAT 57.615 36.364 0.00 0.00 0.00 1.82
647 684 6.894828 TCTTCGCAAAAATAGAGTTGGTAAC 58.105 36.000 0.00 0.00 0.00 2.50
650 687 5.531659 TCGCAAAAATAGAGTTGGTAACCAA 59.468 36.000 0.00 0.00 41.69 3.67
657 700 9.802039 AAAATAGAGTTGGTAACCAATACAAGA 57.198 29.630 0.00 0.00 45.80 3.02
666 709 1.285078 ACCAATACAAGAAGGGGAGGC 59.715 52.381 0.00 0.00 0.00 4.70
766 1114 2.229784 CTGAACTGAAGCCCATTTCCAC 59.770 50.000 4.95 0.00 34.61 4.02
785 1151 7.566658 TTCCACCTAAATTGGAATTCCATTT 57.433 32.000 27.53 24.97 46.23 2.32
786 1152 7.181569 TCCACCTAAATTGGAATTCCATTTC 57.818 36.000 27.53 0.00 46.97 2.17
787 1153 6.156083 TCCACCTAAATTGGAATTCCATTTCC 59.844 38.462 27.53 0.05 46.97 3.13
973 1392 3.597728 GCCGGCGAAACCCACAAA 61.598 61.111 12.58 0.00 33.26 2.83
1518 1940 1.003718 CCTCAAGTGGGGGTTCGTC 60.004 63.158 0.00 0.00 0.00 4.20
1685 2107 4.783621 GGCTGACGATGCCTGGCA 62.784 66.667 25.65 25.65 46.38 4.92
1710 2132 3.884704 TTGCAGGATGGTGGTGGCC 62.885 63.158 0.00 0.00 35.86 5.36
1801 2223 1.635817 GCTGGGAAGGAGGGTGCATA 61.636 60.000 0.00 0.00 0.00 3.14
1803 2225 0.253160 TGGGAAGGAGGGTGCATAGT 60.253 55.000 0.00 0.00 0.00 2.12
1824 2246 0.538057 ATGTTGCAGAGGGTGGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
1833 2255 2.763645 GGGTGGTGTGGGTGGAAGT 61.764 63.158 0.00 0.00 0.00 3.01
1906 2328 0.401738 CTCTGCCAGGGAGGTTTTCA 59.598 55.000 8.36 0.00 40.61 2.69
1919 2341 3.565910 TTTTCAACGGCATGGCGGC 62.566 57.895 39.57 0.00 32.02 6.53
1968 2390 5.502153 TGGTTAACGTTTATGCAAAGTGT 57.498 34.783 5.91 0.00 0.00 3.55
1975 2397 3.638484 GTTTATGCAAAGTGTGGTCACC 58.362 45.455 0.00 0.00 44.83 4.02
1992 2414 1.218585 CCTGGAGAGTGCAGCTCAG 59.781 63.158 15.99 11.52 46.47 3.35
2040 2462 2.666619 CGCAGTTTCTTGGAGTTGCATC 60.667 50.000 0.00 0.00 0.00 3.91
2055 2477 0.506080 GCATCATCGCTGCTTACTCG 59.494 55.000 0.00 0.00 36.68 4.18
2127 2550 6.378582 TGAAGAAAATGTTGAGCCGATTAAC 58.621 36.000 0.00 0.00 0.00 2.01
2217 2646 7.969536 ATATGATAACTACATTGTCAGTGGC 57.030 36.000 0.00 0.00 41.22 5.01
2235 2664 1.205417 GGCAAGGCTGTACTTACCGTA 59.795 52.381 0.00 0.00 0.00 4.02
2242 2671 7.201670 GCAAGGCTGTACTTACCGTAAATTTAT 60.202 37.037 0.31 0.00 0.00 1.40
2244 2673 6.259387 AGGCTGTACTTACCGTAAATTTATGC 59.741 38.462 11.32 0.00 0.00 3.14
2298 2727 2.693591 AGATTTGGATGCAGCATCAAGG 59.306 45.455 31.89 0.00 42.13 3.61
2380 2809 0.249447 TGTGCACGGTCAGTCTGAAG 60.249 55.000 13.13 4.62 0.00 3.02
2422 2851 4.762251 AGCAGTTGAAAGGAACAGGTATTC 59.238 41.667 0.00 0.00 0.00 1.75
2562 5601 4.784329 CAGAACACTATGCATGCATGATC 58.216 43.478 37.43 26.71 37.82 2.92
2601 5640 2.439507 TGGACTTCTTGAAGAGGCACTT 59.560 45.455 16.21 0.00 41.55 3.16
2613 5652 2.961062 AGAGGCACTTGAAGTTGCAAAT 59.039 40.909 17.11 0.00 41.55 2.32
2700 5739 4.498682 GGCAATGTAGAGATTGGTGAATGC 60.499 45.833 2.02 0.00 34.42 3.56
2774 5813 8.907885 TGTACTTATGTGCCAAATATATGCAAA 58.092 29.630 0.00 0.00 36.65 3.68
2841 5880 7.366226 TGAGAGATAGAGGGGTAAAGAAGAAT 58.634 38.462 0.00 0.00 0.00 2.40
2891 5930 7.445096 GGATGGAAAATTTCATGAGTTTTTGGT 59.555 33.333 17.45 9.50 0.00 3.67
2913 5952 3.253921 TGGCAGATGTTTCACATGTTCAG 59.746 43.478 0.00 0.00 39.27 3.02
2940 5979 9.074576 TCAGAAGATATTTATGCAGCATTGAAT 57.925 29.630 14.58 15.83 0.00 2.57
2998 6037 5.139435 TCCTCTAACTTGACATGAGTGTG 57.861 43.478 0.00 0.00 39.09 3.82
3000 6039 4.262635 CCTCTAACTTGACATGAGTGTGGT 60.263 45.833 0.00 0.00 39.09 4.16
3001 6040 4.631131 TCTAACTTGACATGAGTGTGGTG 58.369 43.478 0.00 0.00 39.09 4.17
3002 6041 2.260844 ACTTGACATGAGTGTGGTGG 57.739 50.000 0.00 0.00 39.09 4.61
3003 6042 0.877071 CTTGACATGAGTGTGGTGGC 59.123 55.000 0.00 0.00 39.09 5.01
3004 6043 0.182299 TTGACATGAGTGTGGTGGCA 59.818 50.000 0.00 0.00 39.09 4.92
3005 6044 0.182299 TGACATGAGTGTGGTGGCAA 59.818 50.000 0.00 0.00 39.09 4.52
3007 6046 1.200716 GACATGAGTGTGGTGGCAATG 59.799 52.381 0.00 0.00 39.09 2.82
3008 6047 0.108992 CATGAGTGTGGTGGCAATGC 60.109 55.000 0.00 0.00 0.00 3.56
3010 6049 0.467844 TGAGTGTGGTGGCAATGCTT 60.468 50.000 4.82 0.00 0.00 3.91
3012 6051 0.675633 AGTGTGGTGGCAATGCTTTC 59.324 50.000 4.82 0.00 0.00 2.62
3013 6052 0.664166 GTGTGGTGGCAATGCTTTCG 60.664 55.000 4.82 0.00 0.00 3.46
3060 6099 4.199310 GCCATGGCTGTAGATAGAAAACA 58.801 43.478 29.98 0.00 38.26 2.83
3068 6107 8.134895 TGGCTGTAGATAGAAAACAAAAACTTG 58.865 33.333 0.00 0.00 0.00 3.16
3072 6111 8.470805 TGTAGATAGAAAACAAAAACTTGGCAA 58.529 29.630 0.00 0.00 0.00 4.52
3112 6162 4.462394 AAGCTCAGCTTCGTGCAA 57.538 50.000 5.91 0.00 46.77 4.08
3113 6163 2.938354 AAGCTCAGCTTCGTGCAAT 58.062 47.368 5.91 0.00 46.77 3.56
3114 6164 1.242076 AAGCTCAGCTTCGTGCAATT 58.758 45.000 5.91 0.00 46.77 2.32
3115 6165 0.520404 AGCTCAGCTTCGTGCAATTG 59.480 50.000 0.00 0.00 45.94 2.32
3116 6166 0.239347 GCTCAGCTTCGTGCAATTGT 59.761 50.000 7.40 0.00 45.94 2.71
3117 6167 1.959747 CTCAGCTTCGTGCAATTGTG 58.040 50.000 7.40 0.00 45.94 3.33
3154 6210 3.866651 ACCTGCTGTGATACATTCAGTC 58.133 45.455 0.00 0.00 34.17 3.51
3166 6222 8.814553 GTGATACATTCAGTCCATTCAATGGCT 61.815 40.741 12.09 9.36 41.95 4.75
3184 6240 5.892160 TGGCTCAAGAAAGAGATGAATTG 57.108 39.130 0.00 0.00 37.87 2.32
3186 6242 4.439837 GGCTCAAGAAAGAGATGAATTGCC 60.440 45.833 0.00 0.00 37.87 4.52
3187 6243 4.398673 GCTCAAGAAAGAGATGAATTGCCT 59.601 41.667 0.00 0.00 37.87 4.75
3188 6244 5.587844 GCTCAAGAAAGAGATGAATTGCCTA 59.412 40.000 0.00 0.00 37.87 3.93
3215 6272 8.359642 TGTCTTAAAAAGAAATTCATGGACAGG 58.640 33.333 0.00 0.00 39.67 4.00
3283 6347 7.223584 TCAGATTTTGTCATGTGGAGAAACTA 58.776 34.615 0.00 0.00 38.37 2.24
3319 6384 4.312443 GAACTTGATTGACCCACGACTAA 58.688 43.478 0.00 0.00 0.00 2.24
3371 6491 5.753721 ACTCCTTAGCTCTTCTTTGTCAT 57.246 39.130 0.00 0.00 0.00 3.06
3378 6498 7.437862 CCTTAGCTCTTCTTTGTCATGTAGATC 59.562 40.741 0.00 0.00 0.00 2.75
3461 6581 9.461312 AGAGCTTTTACATGGTGAAACATATTA 57.539 29.630 0.00 0.00 39.98 0.98
3599 6719 6.665992 TGTAGTGAAATCTAACCACTGAGT 57.334 37.500 0.00 0.00 40.86 3.41
3651 6771 7.350744 TGAATAAATGAAATGCTATGCTGGT 57.649 32.000 0.00 0.00 0.00 4.00
3652 6772 8.462589 TGAATAAATGAAATGCTATGCTGGTA 57.537 30.769 0.00 0.00 0.00 3.25
3653 6773 9.081204 TGAATAAATGAAATGCTATGCTGGTAT 57.919 29.630 0.00 0.00 0.00 2.73
3654 6774 9.918630 GAATAAATGAAATGCTATGCTGGTATT 57.081 29.630 0.00 0.00 0.00 1.89
3691 6811 7.675062 AGCTAGATATTATTGTGGAAGTGGAG 58.325 38.462 0.00 0.00 0.00 3.86
3755 6875 4.510167 ATTACTCTGGGAAATGGGAGTG 57.490 45.455 0.00 0.00 39.09 3.51
3763 6883 2.949644 GGGAAATGGGAGTGAATTACGG 59.050 50.000 0.00 0.00 0.00 4.02
3767 6887 5.359860 GGAAATGGGAGTGAATTACGGAAAT 59.640 40.000 0.00 0.00 0.00 2.17
3773 6893 5.884232 GGGAGTGAATTACGGAAATTTAGGT 59.116 40.000 0.00 0.00 37.93 3.08
3807 6927 9.900710 AACTCTTATTCTGTATACGCTAAGATG 57.099 33.333 12.65 10.56 0.00 2.90
3809 6929 7.882179 TCTTATTCTGTATACGCTAAGATGCA 58.118 34.615 0.00 0.00 0.00 3.96
3846 6966 6.831868 AGTTTCCTTCTACTAGTCTCTCATCC 59.168 42.308 0.00 0.00 0.00 3.51
3888 7212 9.099454 GAATACTAGGTGAAATGACCTTAACTG 57.901 37.037 0.00 0.00 44.53 3.16
3891 7215 7.331791 ACTAGGTGAAATGACCTTAACTGATC 58.668 38.462 0.00 0.00 44.53 2.92
3892 7216 6.380079 AGGTGAAATGACCTTAACTGATCT 57.620 37.500 0.00 0.00 44.53 2.75
3894 7218 7.918076 AGGTGAAATGACCTTAACTGATCTTA 58.082 34.615 0.00 0.00 44.53 2.10
3895 7219 8.383175 AGGTGAAATGACCTTAACTGATCTTAA 58.617 33.333 0.00 0.00 44.53 1.85
3944 7268 6.128418 GCAGAATCAGAGTTTCCAGAGTTTAC 60.128 42.308 0.00 0.00 0.00 2.01
3962 7286 5.186797 AGTTTACCTCAGTCCATCTTGAGAG 59.813 44.000 3.22 0.00 0.00 3.20
3966 7290 2.759535 CTCAGTCCATCTTGAGAGCAGA 59.240 50.000 0.00 0.00 0.00 4.26
3974 7298 1.133216 TCTTGAGAGCAGACCGATTCG 59.867 52.381 0.00 0.00 0.00 3.34
3987 7311 2.757686 CGATTCGGATTCGACTCAGA 57.242 50.000 13.53 3.28 45.92 3.27
3988 7312 3.275400 CGATTCGGATTCGACTCAGAT 57.725 47.619 13.53 0.00 45.92 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.183101 TGCTGAAAGGAAGTTTTTGCTTG 58.817 39.130 0.00 0.00 43.19 4.01
20 21 3.655276 CAAGCAATGCTGAAAGGAAGT 57.345 42.857 9.14 0.00 38.32 3.01
58 59 2.289195 CCATCACCAAGCAGCAAAACAT 60.289 45.455 0.00 0.00 0.00 2.71
133 134 1.349026 CTTGTCTCAGCCTTCCCTTCA 59.651 52.381 0.00 0.00 0.00 3.02
134 135 1.339535 CCTTGTCTCAGCCTTCCCTTC 60.340 57.143 0.00 0.00 0.00 3.46
191 217 9.760660 GCAACAAAAGAACAGATATTGTAGTAG 57.239 33.333 0.00 0.00 39.73 2.57
204 231 5.384063 TTCTCAACAGCAACAAAAGAACA 57.616 34.783 0.00 0.00 0.00 3.18
205 232 6.704512 TTTTCTCAACAGCAACAAAAGAAC 57.295 33.333 0.00 0.00 0.00 3.01
206 233 6.128580 GCTTTTTCTCAACAGCAACAAAAGAA 60.129 34.615 5.82 0.00 33.48 2.52
208 235 5.120519 TGCTTTTTCTCAACAGCAACAAAAG 59.879 36.000 0.00 0.00 39.32 2.27
230 257 7.134815 CCTTAAATAATCACAGTACATGCTGC 58.865 38.462 0.00 0.00 39.96 5.25
261 298 3.187227 AGAAATCACTACTTGTTGCTGCG 59.813 43.478 0.00 0.00 0.00 5.18
262 299 4.756084 AGAAATCACTACTTGTTGCTGC 57.244 40.909 0.00 0.00 0.00 5.25
263 300 6.418819 CCAAAAGAAATCACTACTTGTTGCTG 59.581 38.462 0.00 0.00 0.00 4.41
264 301 6.461509 CCCAAAAGAAATCACTACTTGTTGCT 60.462 38.462 0.00 0.00 0.00 3.91
265 302 5.691754 CCCAAAAGAAATCACTACTTGTTGC 59.308 40.000 0.00 0.00 0.00 4.17
266 303 5.691754 GCCCAAAAGAAATCACTACTTGTTG 59.308 40.000 0.00 0.00 0.00 3.33
267 304 5.362430 TGCCCAAAAGAAATCACTACTTGTT 59.638 36.000 0.00 0.00 0.00 2.83
268 305 4.892934 TGCCCAAAAGAAATCACTACTTGT 59.107 37.500 0.00 0.00 0.00 3.16
269 306 5.452078 TGCCCAAAAGAAATCACTACTTG 57.548 39.130 0.00 0.00 0.00 3.16
270 307 7.775053 TTATGCCCAAAAGAAATCACTACTT 57.225 32.000 0.00 0.00 0.00 2.24
271 308 7.397192 ACATTATGCCCAAAAGAAATCACTACT 59.603 33.333 0.00 0.00 0.00 2.57
272 309 7.489113 CACATTATGCCCAAAAGAAATCACTAC 59.511 37.037 0.00 0.00 0.00 2.73
273 310 7.395772 TCACATTATGCCCAAAAGAAATCACTA 59.604 33.333 0.00 0.00 0.00 2.74
274 311 6.211184 TCACATTATGCCCAAAAGAAATCACT 59.789 34.615 0.00 0.00 0.00 3.41
275 312 6.397272 TCACATTATGCCCAAAAGAAATCAC 58.603 36.000 0.00 0.00 0.00 3.06
276 313 6.602410 TCACATTATGCCCAAAAGAAATCA 57.398 33.333 0.00 0.00 0.00 2.57
277 314 9.768662 ATAATCACATTATGCCCAAAAGAAATC 57.231 29.630 0.00 0.00 34.32 2.17
279 316 9.956640 AAATAATCACATTATGCCCAAAAGAAA 57.043 25.926 0.00 0.00 35.71 2.52
283 320 9.829507 CCTTAAATAATCACATTATGCCCAAAA 57.170 29.630 0.00 0.00 35.71 2.44
284 321 8.428063 CCCTTAAATAATCACATTATGCCCAAA 58.572 33.333 0.00 0.00 35.71 3.28
285 322 7.472663 GCCCTTAAATAATCACATTATGCCCAA 60.473 37.037 0.00 0.00 35.71 4.12
286 323 6.014669 GCCCTTAAATAATCACATTATGCCCA 60.015 38.462 0.00 0.00 35.71 5.36
287 324 6.211384 AGCCCTTAAATAATCACATTATGCCC 59.789 38.462 0.00 0.00 35.71 5.36
288 325 7.232118 AGCCCTTAAATAATCACATTATGCC 57.768 36.000 0.00 0.00 35.71 4.40
289 326 8.244113 GGTAGCCCTTAAATAATCACATTATGC 58.756 37.037 0.00 0.00 35.71 3.14
290 327 8.450964 CGGTAGCCCTTAAATAATCACATTATG 58.549 37.037 0.00 0.00 35.71 1.90
291 328 7.120726 GCGGTAGCCCTTAAATAATCACATTAT 59.879 37.037 0.00 0.00 35.73 1.28
292 329 6.428771 GCGGTAGCCCTTAAATAATCACATTA 59.571 38.462 0.00 0.00 37.42 1.90
293 330 5.240844 GCGGTAGCCCTTAAATAATCACATT 59.759 40.000 0.00 0.00 37.42 2.71
294 331 4.760204 GCGGTAGCCCTTAAATAATCACAT 59.240 41.667 0.00 0.00 37.42 3.21
295 332 4.131596 GCGGTAGCCCTTAAATAATCACA 58.868 43.478 0.00 0.00 37.42 3.58
296 333 4.131596 TGCGGTAGCCCTTAAATAATCAC 58.868 43.478 0.00 0.00 44.33 3.06
297 334 4.385825 CTGCGGTAGCCCTTAAATAATCA 58.614 43.478 0.00 0.00 44.33 2.57
311 348 1.230635 ACTGCTTGTTGCTGCGGTAG 61.231 55.000 0.00 0.00 45.67 3.18
312 349 1.227823 ACTGCTTGTTGCTGCGGTA 60.228 52.632 0.00 0.00 45.67 4.02
313 350 2.516930 ACTGCTTGTTGCTGCGGT 60.517 55.556 0.00 0.00 43.25 5.68
348 385 3.006967 AGAAGTGATTACCGACTTGCTGT 59.993 43.478 0.00 0.00 32.47 4.40
357 394 5.356882 TGCTCAAAAAGAAGTGATTACCG 57.643 39.130 0.00 0.00 0.00 4.02
372 409 2.288763 TGCGTCTGTACTGATGCTCAAA 60.289 45.455 33.39 19.16 46.05 2.69
373 410 1.272212 TGCGTCTGTACTGATGCTCAA 59.728 47.619 33.39 19.43 46.05 3.02
374 411 0.887933 TGCGTCTGTACTGATGCTCA 59.112 50.000 33.39 19.99 46.05 4.26
375 412 1.923204 CTTGCGTCTGTACTGATGCTC 59.077 52.381 33.39 16.33 46.05 4.26
377 414 0.371645 GCTTGCGTCTGTACTGATGC 59.628 55.000 29.84 29.84 46.07 3.91
378 415 0.642291 CGCTTGCGTCTGTACTGATG 59.358 55.000 15.57 15.57 0.00 3.07
379 416 1.078759 GCGCTTGCGTCTGTACTGAT 61.079 55.000 16.38 0.00 0.00 2.90
380 417 1.733041 GCGCTTGCGTCTGTACTGA 60.733 57.895 16.38 0.00 0.00 3.41
381 418 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
382 419 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
383 420 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
384 421 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
385 422 0.803768 CTATGAGCGCTTGCGTCTGT 60.804 55.000 13.26 7.66 45.69 3.41
386 423 0.526310 TCTATGAGCGCTTGCGTCTG 60.526 55.000 13.26 0.00 45.69 3.51
387 424 0.387202 ATCTATGAGCGCTTGCGTCT 59.613 50.000 13.26 13.17 45.69 4.18
388 425 1.716581 GTATCTATGAGCGCTTGCGTC 59.283 52.381 13.26 12.36 45.69 5.19
389 426 1.067060 TGTATCTATGAGCGCTTGCGT 59.933 47.619 13.26 3.24 45.69 5.24
390 427 1.453524 GTGTATCTATGAGCGCTTGCG 59.546 52.381 13.26 10.90 45.69 4.85
391 428 2.748605 AGTGTATCTATGAGCGCTTGC 58.251 47.619 13.26 0.00 39.58 4.01
392 429 4.681942 GGTAAGTGTATCTATGAGCGCTTG 59.318 45.833 13.26 2.57 34.20 4.01
393 430 4.262079 GGGTAAGTGTATCTATGAGCGCTT 60.262 45.833 13.26 0.00 36.01 4.68
394 431 3.256136 GGGTAAGTGTATCTATGAGCGCT 59.744 47.826 11.27 11.27 0.00 5.92
395 432 3.576648 GGGTAAGTGTATCTATGAGCGC 58.423 50.000 0.00 0.00 0.00 5.92
396 433 3.827302 AGGGGTAAGTGTATCTATGAGCG 59.173 47.826 0.00 0.00 0.00 5.03
397 434 6.663953 TCATAGGGGTAAGTGTATCTATGAGC 59.336 42.308 0.00 0.00 38.50 4.26
398 435 8.524487 GTTCATAGGGGTAAGTGTATCTATGAG 58.476 40.741 0.00 0.00 41.88 2.90
399 436 7.176165 CGTTCATAGGGGTAAGTGTATCTATGA 59.824 40.741 0.00 0.00 40.36 2.15
400 437 7.313646 CGTTCATAGGGGTAAGTGTATCTATG 58.686 42.308 0.00 0.00 36.86 2.23
401 438 6.071503 GCGTTCATAGGGGTAAGTGTATCTAT 60.072 42.308 0.00 0.00 0.00 1.98
402 439 5.242393 GCGTTCATAGGGGTAAGTGTATCTA 59.758 44.000 0.00 0.00 0.00 1.98
403 440 4.038883 GCGTTCATAGGGGTAAGTGTATCT 59.961 45.833 0.00 0.00 0.00 1.98
404 441 4.202182 TGCGTTCATAGGGGTAAGTGTATC 60.202 45.833 0.00 0.00 0.00 2.24
405 442 3.707611 TGCGTTCATAGGGGTAAGTGTAT 59.292 43.478 0.00 0.00 0.00 2.29
406 443 3.098377 TGCGTTCATAGGGGTAAGTGTA 58.902 45.455 0.00 0.00 0.00 2.90
407 444 1.903860 TGCGTTCATAGGGGTAAGTGT 59.096 47.619 0.00 0.00 0.00 3.55
408 445 2.277084 GTGCGTTCATAGGGGTAAGTG 58.723 52.381 0.00 0.00 0.00 3.16
409 446 1.903860 TGTGCGTTCATAGGGGTAAGT 59.096 47.619 0.00 0.00 0.00 2.24
410 447 2.277084 GTGTGCGTTCATAGGGGTAAG 58.723 52.381 0.00 0.00 0.00 2.34
411 448 1.624312 TGTGTGCGTTCATAGGGGTAA 59.376 47.619 0.00 0.00 0.00 2.85
412 449 1.066716 GTGTGTGCGTTCATAGGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
413 450 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
414 451 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
415 452 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
416 453 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
417 454 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
418 455 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
419 456 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
420 457 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
421 458 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
422 459 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
425 462 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
426 463 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
427 464 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
428 465 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
429 466 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
430 467 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
431 468 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
432 469 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
433 470 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
434 471 2.037772 GTGCTCATAGGGATAGGGTGTG 59.962 54.545 0.00 0.00 0.00 3.82
435 472 2.330216 GTGCTCATAGGGATAGGGTGT 58.670 52.381 0.00 0.00 0.00 4.16
436 473 1.625818 GGTGCTCATAGGGATAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
437 474 1.509961 AGGTGCTCATAGGGATAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
438 475 2.183679 GAGGTGCTCATAGGGATAGGG 58.816 57.143 0.00 0.00 0.00 3.53
439 476 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
440 477 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
441 478 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
442 479 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
443 480 0.468214 CTCGGAGGTGCTCATAGGGA 60.468 60.000 0.00 0.00 31.08 4.20
444 481 0.468214 TCTCGGAGGTGCTCATAGGG 60.468 60.000 4.96 0.00 31.08 3.53
445 482 0.958091 CTCTCGGAGGTGCTCATAGG 59.042 60.000 4.96 0.00 31.08 2.57
446 483 1.606668 GTCTCTCGGAGGTGCTCATAG 59.393 57.143 4.96 0.00 31.08 2.23
447 484 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
448 485 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
449 486 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
450 487 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
451 488 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
452 489 0.963355 ACTCAGTCTCTCGGAGGTGC 60.963 60.000 4.96 0.00 41.46 5.01
453 490 1.091537 GACTCAGTCTCTCGGAGGTG 58.908 60.000 4.96 0.00 41.46 4.00
454 491 0.391927 CGACTCAGTCTCTCGGAGGT 60.392 60.000 2.61 0.00 41.46 3.85
455 492 2.389386 CGACTCAGTCTCTCGGAGG 58.611 63.158 2.61 0.00 41.46 4.30
459 496 0.248417 CATGCCGACTCAGTCTCTCG 60.248 60.000 2.61 0.00 0.00 4.04
460 497 0.814457 ACATGCCGACTCAGTCTCTC 59.186 55.000 2.61 0.00 0.00 3.20
461 498 0.814457 GACATGCCGACTCAGTCTCT 59.186 55.000 2.61 0.00 0.00 3.10
462 499 0.528017 TGACATGCCGACTCAGTCTC 59.472 55.000 2.61 0.00 0.00 3.36
463 500 1.189752 ATGACATGCCGACTCAGTCT 58.810 50.000 2.61 0.00 0.00 3.24
464 501 2.871182 TATGACATGCCGACTCAGTC 57.129 50.000 0.00 0.00 0.00 3.51
465 502 3.132824 TCAATATGACATGCCGACTCAGT 59.867 43.478 0.00 0.00 0.00 3.41
466 503 3.721035 TCAATATGACATGCCGACTCAG 58.279 45.455 0.00 0.00 0.00 3.35
467 504 3.817709 TCAATATGACATGCCGACTCA 57.182 42.857 0.00 0.00 0.00 3.41
468 505 5.679734 ATTTCAATATGACATGCCGACTC 57.320 39.130 0.00 0.00 0.00 3.36
469 506 6.455360 AAATTTCAATATGACATGCCGACT 57.545 33.333 0.00 0.00 0.00 4.18
470 507 6.356977 CGTAAATTTCAATATGACATGCCGAC 59.643 38.462 0.00 0.00 0.00 4.79
471 508 6.258947 TCGTAAATTTCAATATGACATGCCGA 59.741 34.615 0.00 0.00 0.00 5.54
472 509 6.426327 TCGTAAATTTCAATATGACATGCCG 58.574 36.000 0.00 0.00 0.00 5.69
473 510 7.915397 ACTTCGTAAATTTCAATATGACATGCC 59.085 33.333 0.00 0.00 0.00 4.40
474 511 8.841444 ACTTCGTAAATTTCAATATGACATGC 57.159 30.769 0.00 0.00 0.00 4.06
475 512 9.986833 TGACTTCGTAAATTTCAATATGACATG 57.013 29.630 0.00 0.00 0.00 3.21
478 515 9.358123 CGATGACTTCGTAAATTTCAATATGAC 57.642 33.333 0.00 0.00 43.01 3.06
495 532 0.249489 ATGGCGCCTACGATGACTTC 60.249 55.000 29.70 0.00 43.93 3.01
496 533 0.530650 CATGGCGCCTACGATGACTT 60.531 55.000 29.70 0.00 43.93 3.01
497 534 1.068083 CATGGCGCCTACGATGACT 59.932 57.895 29.70 0.00 43.93 3.41
498 535 1.215655 GACATGGCGCCTACGATGAC 61.216 60.000 29.70 18.46 43.93 3.06
499 536 1.067416 GACATGGCGCCTACGATGA 59.933 57.895 29.70 5.17 43.93 2.92
500 537 2.302952 CGACATGGCGCCTACGATG 61.303 63.158 29.70 24.03 43.93 3.84
501 538 2.027605 CGACATGGCGCCTACGAT 59.972 61.111 29.70 9.98 43.93 3.73
502 539 3.405592 GACGACATGGCGCCTACGA 62.406 63.158 29.70 7.47 43.93 3.43
503 540 2.954868 GACGACATGGCGCCTACG 60.955 66.667 29.70 26.23 44.07 3.51
504 541 2.954868 CGACGACATGGCGCCTAC 60.955 66.667 29.70 14.59 33.86 3.18
505 542 3.135457 TCGACGACATGGCGCCTA 61.135 61.111 29.70 14.84 33.86 3.93
506 543 4.796231 GTCGACGACATGGCGCCT 62.796 66.667 29.70 7.33 32.09 5.52
508 545 3.545481 CTGTCGACGACATGGCGC 61.545 66.667 29.29 13.28 41.94 6.53
509 546 1.006825 TTTCTGTCGACGACATGGCG 61.007 55.000 29.29 21.98 41.94 5.69
510 547 0.438830 GTTTCTGTCGACGACATGGC 59.561 55.000 29.29 16.28 41.94 4.40
511 548 1.778334 TGTTTCTGTCGACGACATGG 58.222 50.000 29.29 19.21 41.94 3.66
512 549 3.245797 AGATGTTTCTGTCGACGACATG 58.754 45.455 29.29 21.90 41.94 3.21
513 550 3.502920 GAGATGTTTCTGTCGACGACAT 58.497 45.455 29.29 14.75 41.94 3.06
514 551 2.351447 GGAGATGTTTCTGTCGACGACA 60.351 50.000 27.61 27.61 40.50 4.35
515 552 2.095161 AGGAGATGTTTCTGTCGACGAC 60.095 50.000 20.97 20.97 30.30 4.34
516 553 2.160205 AGGAGATGTTTCTGTCGACGA 58.840 47.619 11.62 8.49 30.30 4.20
517 554 2.520979 GAGGAGATGTTTCTGTCGACG 58.479 52.381 11.62 6.07 30.30 5.12
518 555 2.417515 GGGAGGAGATGTTTCTGTCGAC 60.418 54.545 9.11 9.11 30.30 4.20
519 556 1.825474 GGGAGGAGATGTTTCTGTCGA 59.175 52.381 0.00 0.00 30.30 4.20
520 557 1.550524 TGGGAGGAGATGTTTCTGTCG 59.449 52.381 0.00 0.00 30.30 4.35
521 558 2.569404 AGTGGGAGGAGATGTTTCTGTC 59.431 50.000 0.00 0.00 30.30 3.51
522 559 2.304180 CAGTGGGAGGAGATGTTTCTGT 59.696 50.000 0.00 0.00 30.30 3.41
523 560 2.568956 TCAGTGGGAGGAGATGTTTCTG 59.431 50.000 0.00 0.00 30.30 3.02
524 561 2.907892 TCAGTGGGAGGAGATGTTTCT 58.092 47.619 0.00 0.00 33.88 2.52
525 562 3.703001 TTCAGTGGGAGGAGATGTTTC 57.297 47.619 0.00 0.00 0.00 2.78
526 563 3.812167 GCTTTCAGTGGGAGGAGATGTTT 60.812 47.826 0.00 0.00 0.00 2.83
527 564 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
528 565 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
529 566 1.280133 TGCTTTCAGTGGGAGGAGATG 59.720 52.381 0.00 0.00 0.00 2.90
530 567 1.280421 GTGCTTTCAGTGGGAGGAGAT 59.720 52.381 0.00 0.00 0.00 2.75
531 568 0.687354 GTGCTTTCAGTGGGAGGAGA 59.313 55.000 0.00 0.00 0.00 3.71
532 569 0.397941 TGTGCTTTCAGTGGGAGGAG 59.602 55.000 0.00 0.00 0.00 3.69
533 570 1.003580 GATGTGCTTTCAGTGGGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
534 571 1.457346 GATGTGCTTTCAGTGGGAGG 58.543 55.000 0.00 0.00 0.00 4.30
535 572 1.081892 CGATGTGCTTTCAGTGGGAG 58.918 55.000 0.00 0.00 0.00 4.30
536 573 0.955428 GCGATGTGCTTTCAGTGGGA 60.955 55.000 0.00 0.00 41.73 4.37
537 574 1.503542 GCGATGTGCTTTCAGTGGG 59.496 57.895 0.00 0.00 41.73 4.61
538 575 1.503542 GGCGATGTGCTTTCAGTGG 59.496 57.895 0.00 0.00 45.43 4.00
539 576 1.133253 CGGCGATGTGCTTTCAGTG 59.867 57.895 0.00 0.00 45.43 3.66
540 577 0.602638 TTCGGCGATGTGCTTTCAGT 60.603 50.000 11.76 0.00 45.43 3.41
541 578 0.516877 TTTCGGCGATGTGCTTTCAG 59.483 50.000 11.76 0.00 45.43 3.02
542 579 0.947960 TTTTCGGCGATGTGCTTTCA 59.052 45.000 11.76 0.00 45.43 2.69
543 580 2.177173 GATTTTCGGCGATGTGCTTTC 58.823 47.619 11.76 0.00 45.43 2.62
544 581 1.135402 GGATTTTCGGCGATGTGCTTT 60.135 47.619 11.76 0.00 45.43 3.51
545 582 0.451783 GGATTTTCGGCGATGTGCTT 59.548 50.000 11.76 0.00 45.43 3.91
546 583 0.676466 TGGATTTTCGGCGATGTGCT 60.676 50.000 11.76 0.00 45.43 4.40
547 584 0.248215 CTGGATTTTCGGCGATGTGC 60.248 55.000 11.76 5.82 45.38 4.57
548 585 1.062587 GTCTGGATTTTCGGCGATGTG 59.937 52.381 11.76 0.00 0.00 3.21
549 586 1.066143 AGTCTGGATTTTCGGCGATGT 60.066 47.619 11.76 0.00 0.00 3.06
550 587 1.656652 AGTCTGGATTTTCGGCGATG 58.343 50.000 11.76 0.00 0.00 3.84
551 588 2.009774 CAAGTCTGGATTTTCGGCGAT 58.990 47.619 11.76 0.00 0.00 4.58
552 589 1.001520 TCAAGTCTGGATTTTCGGCGA 59.998 47.619 4.99 4.99 0.00 5.54
553 590 1.438651 TCAAGTCTGGATTTTCGGCG 58.561 50.000 0.00 0.00 0.00 6.46
554 591 2.095212 GGTTCAAGTCTGGATTTTCGGC 60.095 50.000 0.00 0.00 0.00 5.54
555 592 2.488153 GGGTTCAAGTCTGGATTTTCGG 59.512 50.000 0.00 0.00 0.00 4.30
556 593 3.412386 AGGGTTCAAGTCTGGATTTTCG 58.588 45.455 0.00 0.00 0.00 3.46
557 594 3.437049 CGAGGGTTCAAGTCTGGATTTTC 59.563 47.826 0.00 0.00 0.00 2.29
558 595 3.181443 ACGAGGGTTCAAGTCTGGATTTT 60.181 43.478 0.00 0.00 0.00 1.82
559 596 2.372172 ACGAGGGTTCAAGTCTGGATTT 59.628 45.455 0.00 0.00 0.00 2.17
560 597 1.978580 ACGAGGGTTCAAGTCTGGATT 59.021 47.619 0.00 0.00 0.00 3.01
561 598 1.645710 ACGAGGGTTCAAGTCTGGAT 58.354 50.000 0.00 0.00 0.00 3.41
562 599 2.168496 CTACGAGGGTTCAAGTCTGGA 58.832 52.381 0.00 0.00 0.00 3.86
563 600 1.204941 CCTACGAGGGTTCAAGTCTGG 59.795 57.143 0.00 0.00 0.00 3.86
564 601 1.404315 GCCTACGAGGGTTCAAGTCTG 60.404 57.143 0.00 0.00 35.37 3.51
565 602 0.896226 GCCTACGAGGGTTCAAGTCT 59.104 55.000 0.00 0.00 35.37 3.24
566 603 0.896226 AGCCTACGAGGGTTCAAGTC 59.104 55.000 0.00 0.00 45.25 3.01
567 604 0.608640 CAGCCTACGAGGGTTCAAGT 59.391 55.000 3.30 0.00 45.25 3.16
568 605 0.895530 TCAGCCTACGAGGGTTCAAG 59.104 55.000 3.30 0.00 45.25 3.02
569 606 0.895530 CTCAGCCTACGAGGGTTCAA 59.104 55.000 3.30 0.00 45.25 2.69
570 607 1.605058 GCTCAGCCTACGAGGGTTCA 61.605 60.000 3.30 0.00 45.25 3.18
571 608 1.142097 GCTCAGCCTACGAGGGTTC 59.858 63.158 3.30 0.00 45.25 3.62
572 609 0.978146 ATGCTCAGCCTACGAGGGTT 60.978 55.000 0.00 0.00 45.25 4.11
574 611 0.315568 GTATGCTCAGCCTACGAGGG 59.684 60.000 0.00 0.00 35.37 4.30
575 612 0.315568 GGTATGCTCAGCCTACGAGG 59.684 60.000 6.06 0.00 38.80 4.63
576 613 1.032794 TGGTATGCTCAGCCTACGAG 58.967 55.000 6.06 0.00 32.01 4.18
577 614 0.744874 GTGGTATGCTCAGCCTACGA 59.255 55.000 6.06 0.00 32.01 3.43
578 615 0.747255 AGTGGTATGCTCAGCCTACG 59.253 55.000 6.06 0.00 32.01 3.51
579 616 1.482593 ACAGTGGTATGCTCAGCCTAC 59.517 52.381 3.57 3.57 0.00 3.18
580 617 1.757118 GACAGTGGTATGCTCAGCCTA 59.243 52.381 0.00 0.00 0.00 3.93
581 618 0.539051 GACAGTGGTATGCTCAGCCT 59.461 55.000 0.00 0.00 0.00 4.58
582 619 0.462759 GGACAGTGGTATGCTCAGCC 60.463 60.000 0.00 0.00 0.00 4.85
583 620 0.462759 GGGACAGTGGTATGCTCAGC 60.463 60.000 0.00 0.00 0.00 4.26
584 621 1.137872 GAGGGACAGTGGTATGCTCAG 59.862 57.143 0.00 0.00 0.00 3.35
585 622 1.195115 GAGGGACAGTGGTATGCTCA 58.805 55.000 0.00 0.00 0.00 4.26
586 623 1.490574 AGAGGGACAGTGGTATGCTC 58.509 55.000 0.00 0.00 0.00 4.26
587 624 2.766828 GTTAGAGGGACAGTGGTATGCT 59.233 50.000 0.00 0.00 0.00 3.79
588 625 2.158943 GGTTAGAGGGACAGTGGTATGC 60.159 54.545 0.00 0.00 0.00 3.14
589 626 3.104512 TGGTTAGAGGGACAGTGGTATG 58.895 50.000 0.00 0.00 0.00 2.39
590 627 3.484953 TGGTTAGAGGGACAGTGGTAT 57.515 47.619 0.00 0.00 0.00 2.73
591 628 3.012502 AGATGGTTAGAGGGACAGTGGTA 59.987 47.826 0.00 0.00 0.00 3.25
592 629 2.188817 GATGGTTAGAGGGACAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
593 630 2.472029 AGATGGTTAGAGGGACAGTGG 58.528 52.381 0.00 0.00 0.00 4.00
594 631 4.141914 GGTTAGATGGTTAGAGGGACAGTG 60.142 50.000 0.00 0.00 0.00 3.66
595 632 4.031611 GGTTAGATGGTTAGAGGGACAGT 58.968 47.826 0.00 0.00 0.00 3.55
596 633 4.030913 TGGTTAGATGGTTAGAGGGACAG 58.969 47.826 0.00 0.00 0.00 3.51
597 634 3.773119 GTGGTTAGATGGTTAGAGGGACA 59.227 47.826 0.00 0.00 0.00 4.02
598 635 3.773119 TGTGGTTAGATGGTTAGAGGGAC 59.227 47.826 0.00 0.00 0.00 4.46
599 636 3.773119 GTGTGGTTAGATGGTTAGAGGGA 59.227 47.826 0.00 0.00 0.00 4.20
600 637 3.775316 AGTGTGGTTAGATGGTTAGAGGG 59.225 47.826 0.00 0.00 0.00 4.30
601 638 5.187967 AGAAGTGTGGTTAGATGGTTAGAGG 59.812 44.000 0.00 0.00 0.00 3.69
602 639 6.287589 AGAAGTGTGGTTAGATGGTTAGAG 57.712 41.667 0.00 0.00 0.00 2.43
603 640 6.571731 CGAAGAAGTGTGGTTAGATGGTTAGA 60.572 42.308 0.00 0.00 0.00 2.10
604 641 5.577164 CGAAGAAGTGTGGTTAGATGGTTAG 59.423 44.000 0.00 0.00 0.00 2.34
605 642 5.475719 CGAAGAAGTGTGGTTAGATGGTTA 58.524 41.667 0.00 0.00 0.00 2.85
606 643 4.315803 CGAAGAAGTGTGGTTAGATGGTT 58.684 43.478 0.00 0.00 0.00 3.67
607 644 3.864921 GCGAAGAAGTGTGGTTAGATGGT 60.865 47.826 0.00 0.00 0.00 3.55
608 645 2.673368 GCGAAGAAGTGTGGTTAGATGG 59.327 50.000 0.00 0.00 0.00 3.51
609 646 3.325870 TGCGAAGAAGTGTGGTTAGATG 58.674 45.455 0.00 0.00 0.00 2.90
610 647 3.678056 TGCGAAGAAGTGTGGTTAGAT 57.322 42.857 0.00 0.00 0.00 1.98
611 648 3.462483 TTGCGAAGAAGTGTGGTTAGA 57.538 42.857 0.00 0.00 0.00 2.10
612 649 4.545823 TTTTGCGAAGAAGTGTGGTTAG 57.454 40.909 0.00 0.00 0.00 2.34
613 650 4.966965 TTTTTGCGAAGAAGTGTGGTTA 57.033 36.364 0.00 0.00 0.00 2.85
614 651 3.859411 TTTTTGCGAAGAAGTGTGGTT 57.141 38.095 0.00 0.00 0.00 3.67
615 652 4.819630 TCTATTTTTGCGAAGAAGTGTGGT 59.180 37.500 0.00 0.00 0.00 4.16
616 653 5.049405 ACTCTATTTTTGCGAAGAAGTGTGG 60.049 40.000 0.00 0.00 0.00 4.17
617 654 5.990408 ACTCTATTTTTGCGAAGAAGTGTG 58.010 37.500 0.00 0.00 0.00 3.82
618 655 6.430451 CAACTCTATTTTTGCGAAGAAGTGT 58.570 36.000 0.00 0.00 0.00 3.55
619 656 5.853282 CCAACTCTATTTTTGCGAAGAAGTG 59.147 40.000 0.00 0.00 0.00 3.16
620 657 5.531287 ACCAACTCTATTTTTGCGAAGAAGT 59.469 36.000 0.00 0.00 0.00 3.01
621 658 6.002062 ACCAACTCTATTTTTGCGAAGAAG 57.998 37.500 0.00 0.00 0.00 2.85
622 659 7.357303 GTTACCAACTCTATTTTTGCGAAGAA 58.643 34.615 0.00 0.00 0.00 2.52
623 660 6.072893 GGTTACCAACTCTATTTTTGCGAAGA 60.073 38.462 0.00 0.00 0.00 2.87
624 661 6.084277 GGTTACCAACTCTATTTTTGCGAAG 58.916 40.000 0.00 0.00 0.00 3.79
625 662 5.531659 TGGTTACCAACTCTATTTTTGCGAA 59.468 36.000 0.00 0.00 0.00 4.70
626 663 5.064558 TGGTTACCAACTCTATTTTTGCGA 58.935 37.500 0.00 0.00 0.00 5.10
627 664 5.365403 TGGTTACCAACTCTATTTTTGCG 57.635 39.130 0.00 0.00 0.00 4.85
628 665 8.301002 TGTATTGGTTACCAACTCTATTTTTGC 58.699 33.333 19.93 4.48 46.95 3.68
635 672 7.391620 CCTTCTTGTATTGGTTACCAACTCTA 58.608 38.462 19.93 5.39 46.95 2.43
647 684 1.566231 AGCCTCCCCTTCTTGTATTGG 59.434 52.381 0.00 0.00 0.00 3.16
650 687 0.548510 GCAGCCTCCCCTTCTTGTAT 59.451 55.000 0.00 0.00 0.00 2.29
657 700 1.228675 CAAACAGCAGCCTCCCCTT 60.229 57.895 0.00 0.00 0.00 3.95
666 709 4.454678 TCCAATATAGCTCCAAACAGCAG 58.545 43.478 0.00 0.00 42.40 4.24
717 765 2.315176 TCCAATCTAGCTCAGCTCTCC 58.685 52.381 0.00 0.00 40.44 3.71
722 770 3.813443 TGGAATTCCAATCTAGCTCAGC 58.187 45.455 25.13 0.00 44.35 4.26
729 818 5.045651 TCAGTTCAGCTGGAATTCCAATCTA 60.046 40.000 26.87 11.25 46.97 1.98
731 1063 4.012374 TCAGTTCAGCTGGAATTCCAATC 58.988 43.478 26.87 20.38 46.97 2.67
790 1156 6.264088 GCTTCAATTCCAATTCTAGCTCAAG 58.736 40.000 0.00 0.00 32.92 3.02
1125 1547 3.134792 GAGGCGCAGGACTCGAGA 61.135 66.667 21.68 0.00 38.87 4.04
1302 1724 1.227147 GGCGAGCATGTAGGCGTTA 60.227 57.895 0.00 0.00 39.27 3.18
1555 1977 4.189188 CCCGTGGTCCGCGTAGAG 62.189 72.222 22.66 7.86 35.46 2.43
1662 2084 2.507944 GCATCGTCAGCCATCCCT 59.492 61.111 0.00 0.00 0.00 4.20
1685 2107 0.667993 CACCATCCTGCAAAACACGT 59.332 50.000 0.00 0.00 0.00 4.49
1801 2223 1.705186 ACCACCCTCTGCAACATAACT 59.295 47.619 0.00 0.00 0.00 2.24
1803 2225 1.423541 ACACCACCCTCTGCAACATAA 59.576 47.619 0.00 0.00 0.00 1.90
1824 2246 1.534729 CCAAGCTAACACTTCCACCC 58.465 55.000 0.00 0.00 0.00 4.61
1833 2255 1.793581 CGCATTCGCCAAGCTAACA 59.206 52.632 0.00 0.00 33.11 2.41
1919 2341 2.093447 GTCCAGGAGTACACATCCTTGG 60.093 54.545 0.00 5.84 45.13 3.61
1968 2390 1.459348 TGCACTCTCCAGGTGACCA 60.459 57.895 3.63 0.00 36.89 4.02
1975 2397 1.448189 GCTGAGCTGCACTCTCCAG 60.448 63.158 14.60 10.15 46.41 3.86
1992 2414 3.071602 TCCTAGGCATATCCTCAAACAGC 59.928 47.826 2.96 0.00 43.20 4.40
2040 2462 4.093115 TGCGAGTAAGCAGCGATG 57.907 55.556 0.00 0.00 42.92 3.84
2127 2550 1.291877 GCACACTCACAAGGGTAGCG 61.292 60.000 0.00 0.00 36.87 4.26
2217 2646 6.490566 AAATTTACGGTAAGTACAGCCTTG 57.509 37.500 0.33 0.00 34.56 3.61
2298 2727 5.028549 TCTCTCCCATCTCAGCAAATAAC 57.971 43.478 0.00 0.00 0.00 1.89
2380 2809 4.573900 TGCTCAAAGAGATGAAGGACTTC 58.426 43.478 5.14 5.14 39.91 3.01
2422 2851 3.139850 GGAATGTGATCTCATCAGGCAG 58.860 50.000 10.54 0.00 40.53 4.85
2601 5640 2.896044 TGGCATACCATTTGCAACTTCA 59.104 40.909 0.00 0.00 42.67 3.02
2676 5715 3.281727 TCACCAATCTCTACATTGCCC 57.718 47.619 0.00 0.00 33.08 5.36
2700 5739 4.806247 AGTTTTACTAGCTTATCTGCAGCG 59.194 41.667 9.47 0.00 42.55 5.18
2774 5813 8.336235 TCTTCACCTGATCCCATTTACTTTTAT 58.664 33.333 0.00 0.00 0.00 1.40
2841 5880 8.010697 TCCACTTCAATAGAACTATATCCAGGA 58.989 37.037 0.00 0.00 0.00 3.86
2862 5901 6.923199 AACTCATGAAATTTTCCATCCACT 57.077 33.333 6.68 0.00 0.00 4.00
2913 5952 7.868775 TCAATGCTGCATAAATATCTTCTGAC 58.131 34.615 16.58 0.00 0.00 3.51
2998 6037 1.212751 GGACGAAAGCATTGCCACC 59.787 57.895 4.70 0.00 0.00 4.61
3000 6039 0.597568 CAAGGACGAAAGCATTGCCA 59.402 50.000 4.70 0.00 0.00 4.92
3001 6040 0.598065 ACAAGGACGAAAGCATTGCC 59.402 50.000 4.70 0.00 34.15 4.52
3002 6041 2.287547 TGAACAAGGACGAAAGCATTGC 60.288 45.455 0.00 0.00 34.15 3.56
3003 6042 3.624326 TGAACAAGGACGAAAGCATTG 57.376 42.857 0.00 0.00 35.89 2.82
3004 6043 3.612479 GCATGAACAAGGACGAAAGCATT 60.612 43.478 0.00 0.00 0.00 3.56
3005 6044 2.095059 GCATGAACAAGGACGAAAGCAT 60.095 45.455 0.00 0.00 0.00 3.79
3007 6046 1.266718 TGCATGAACAAGGACGAAAGC 59.733 47.619 0.00 0.00 0.00 3.51
3008 6047 2.350772 GGTGCATGAACAAGGACGAAAG 60.351 50.000 6.08 0.00 0.00 2.62
3010 6049 1.202758 AGGTGCATGAACAAGGACGAA 60.203 47.619 6.08 0.00 0.00 3.85
3012 6051 0.798776 GAGGTGCATGAACAAGGACG 59.201 55.000 6.08 0.00 0.00 4.79
3013 6052 1.896220 TGAGGTGCATGAACAAGGAC 58.104 50.000 6.08 0.00 0.00 3.85
3060 6099 2.233431 TGCTGTCTGTTGCCAAGTTTTT 59.767 40.909 0.00 0.00 0.00 1.94
3068 6107 4.644103 ATATGAAATGCTGTCTGTTGCC 57.356 40.909 0.00 0.00 0.00 4.52
3072 6111 9.956720 GCTTTAAATATATGAAATGCTGTCTGT 57.043 29.630 9.30 0.00 0.00 3.41
3111 6161 6.490040 AGGTCAAAACTATGTACAGCACAATT 59.510 34.615 0.33 0.00 41.55 2.32
3112 6162 6.003950 AGGTCAAAACTATGTACAGCACAAT 58.996 36.000 0.33 0.00 41.55 2.71
3113 6163 5.238432 CAGGTCAAAACTATGTACAGCACAA 59.762 40.000 0.33 0.00 41.55 3.33
3114 6164 4.754618 CAGGTCAAAACTATGTACAGCACA 59.245 41.667 0.33 0.00 42.69 4.57
3115 6165 4.378459 GCAGGTCAAAACTATGTACAGCAC 60.378 45.833 0.33 0.00 0.00 4.40
3116 6166 3.751175 GCAGGTCAAAACTATGTACAGCA 59.249 43.478 0.33 0.00 0.00 4.41
3117 6167 4.003648 AGCAGGTCAAAACTATGTACAGC 58.996 43.478 0.33 0.00 0.00 4.40
3118 6168 4.997395 ACAGCAGGTCAAAACTATGTACAG 59.003 41.667 0.33 0.00 0.00 2.74
3166 6222 7.114754 ACATAGGCAATTCATCTCTTTCTTGA 58.885 34.615 0.00 0.00 0.00 3.02
3173 6229 9.466497 TTTTTAAGACATAGGCAATTCATCTCT 57.534 29.630 0.00 0.00 0.00 3.10
3184 6240 9.305925 CCATGAATTTCTTTTTAAGACATAGGC 57.694 33.333 0.00 0.00 37.23 3.93
3188 6244 9.918630 CTGTCCATGAATTTCTTTTTAAGACAT 57.081 29.630 0.00 0.00 37.23 3.06
3215 6272 4.541973 ACAAATCAGAATGGCCCTTTTC 57.458 40.909 0.00 0.61 36.16 2.29
3297 6361 2.767505 AGTCGTGGGTCAATCAAGTTC 58.232 47.619 0.00 0.00 0.00 3.01
3302 6366 4.221924 TCAGAATTAGTCGTGGGTCAATCA 59.778 41.667 0.00 0.00 0.00 2.57
3312 6377 4.957296 ACAGTTTGGTCAGAATTAGTCGT 58.043 39.130 0.00 0.00 0.00 4.34
3313 6378 6.645415 ACTTACAGTTTGGTCAGAATTAGTCG 59.355 38.462 0.00 0.00 0.00 4.18
3319 6384 7.170998 CGTAAGAACTTACAGTTTGGTCAGAAT 59.829 37.037 19.94 0.00 44.12 2.40
3352 6420 6.634805 TCTACATGACAAAGAAGAGCTAAGG 58.365 40.000 0.00 0.00 0.00 2.69
3396 6516 7.350110 GCACATGTTTGCATAACAACTTAAT 57.650 32.000 15.21 0.20 42.49 1.40
3461 6581 5.127682 GCATTTTGGATACTGGAATGGAAGT 59.872 40.000 0.00 0.00 34.01 3.01
3528 6648 8.324163 ACCAACATAGTAACAGAAAGTCAATC 57.676 34.615 0.00 0.00 0.00 2.67
3535 6655 9.226606 CCTTGATAACCAACATAGTAACAGAAA 57.773 33.333 0.00 0.00 0.00 2.52
3548 6668 6.773976 TGATTTCCATCCTTGATAACCAAC 57.226 37.500 0.00 0.00 0.00 3.77
3599 6719 2.174639 CCCCAACCATTGCTGGAGTATA 59.825 50.000 0.00 0.00 46.37 1.47
3661 6781 9.905713 ACTTCCACAATAATATCTAGCTTTCAA 57.094 29.630 0.00 0.00 0.00 2.69
3662 6782 9.330063 CACTTCCACAATAATATCTAGCTTTCA 57.670 33.333 0.00 0.00 0.00 2.69
3663 6783 8.778358 CCACTTCCACAATAATATCTAGCTTTC 58.222 37.037 0.00 0.00 0.00 2.62
3664 6784 8.494433 TCCACTTCCACAATAATATCTAGCTTT 58.506 33.333 0.00 0.00 0.00 3.51
3665 6785 8.034313 TCCACTTCCACAATAATATCTAGCTT 57.966 34.615 0.00 0.00 0.00 3.74
3666 6786 7.256475 CCTCCACTTCCACAATAATATCTAGCT 60.256 40.741 0.00 0.00 0.00 3.32
3667 6787 6.876257 CCTCCACTTCCACAATAATATCTAGC 59.124 42.308 0.00 0.00 0.00 3.42
3668 6788 6.876257 GCCTCCACTTCCACAATAATATCTAG 59.124 42.308 0.00 0.00 0.00 2.43
3669 6789 6.328934 TGCCTCCACTTCCACAATAATATCTA 59.671 38.462 0.00 0.00 0.00 1.98
3670 6790 5.132648 TGCCTCCACTTCCACAATAATATCT 59.867 40.000 0.00 0.00 0.00 1.98
3671 6791 5.376625 TGCCTCCACTTCCACAATAATATC 58.623 41.667 0.00 0.00 0.00 1.63
3672 6792 5.387113 TGCCTCCACTTCCACAATAATAT 57.613 39.130 0.00 0.00 0.00 1.28
3673 6793 4.853468 TGCCTCCACTTCCACAATAATA 57.147 40.909 0.00 0.00 0.00 0.98
3674 6794 3.737559 TGCCTCCACTTCCACAATAAT 57.262 42.857 0.00 0.00 0.00 1.28
3675 6795 3.355378 CATGCCTCCACTTCCACAATAA 58.645 45.455 0.00 0.00 0.00 1.40
3746 6866 6.850752 AAATTTCCGTAATTCACTCCCATT 57.149 33.333 0.00 0.00 35.39 3.16
3797 6917 9.658799 ACTATTCATATTAATGCATCTTAGCGT 57.341 29.630 0.00 0.00 37.31 5.07
3846 6966 3.449018 AGTATTCCTGTAGGAGTGCACTG 59.551 47.826 27.27 8.50 46.36 3.66
3891 7215 3.254657 TGTTTGGCCGTTTGATCCTTAAG 59.745 43.478 0.00 0.00 0.00 1.85
3892 7216 3.223435 TGTTTGGCCGTTTGATCCTTAA 58.777 40.909 0.00 0.00 0.00 1.85
3894 7218 1.613437 CTGTTTGGCCGTTTGATCCTT 59.387 47.619 0.00 0.00 0.00 3.36
3895 7219 1.247567 CTGTTTGGCCGTTTGATCCT 58.752 50.000 0.00 0.00 0.00 3.24
3897 7221 0.958822 ACCTGTTTGGCCGTTTGATC 59.041 50.000 0.00 0.00 40.22 2.92
3898 7222 0.673437 CACCTGTTTGGCCGTTTGAT 59.327 50.000 0.00 0.00 40.22 2.57
3899 7223 0.394488 TCACCTGTTTGGCCGTTTGA 60.394 50.000 0.00 0.00 40.22 2.69
3901 7225 1.734388 GCTCACCTGTTTGGCCGTTT 61.734 55.000 0.00 0.00 40.22 3.60
3903 7227 2.594592 GCTCACCTGTTTGGCCGT 60.595 61.111 0.00 0.00 40.22 5.68
3905 7229 0.823356 TTCTGCTCACCTGTTTGGCC 60.823 55.000 0.00 0.00 40.22 5.36
3906 7230 1.200948 GATTCTGCTCACCTGTTTGGC 59.799 52.381 0.00 0.00 40.22 4.52
3907 7231 2.486982 CTGATTCTGCTCACCTGTTTGG 59.513 50.000 0.00 0.00 42.93 3.28
3908 7232 3.405831 TCTGATTCTGCTCACCTGTTTG 58.594 45.455 0.00 0.00 0.00 2.93
3944 7268 1.829849 TGCTCTCAAGATGGACTGAGG 59.170 52.381 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.