Multiple sequence alignment - TraesCS7A01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G100800 chr7A 100.000 3276 0 0 1 3276 61920262 61916987 0.000000e+00 6050.0
1 TraesCS7A01G100800 chr7A 97.396 384 8 2 2891 3274 61905298 61904917 0.000000e+00 652.0
2 TraesCS7A01G100800 chr7A 84.021 388 52 10 2893 3276 223860164 223859783 6.680000e-97 364.0
3 TraesCS7A01G100800 chr4A 94.713 2705 124 11 1 2700 542251169 542248479 0.000000e+00 4185.0
4 TraesCS7A01G100800 chr4A 92.854 2113 146 3 115 2226 573107189 573109297 0.000000e+00 3061.0
5 TraesCS7A01G100800 chr4A 94.293 1612 73 9 1091 2700 439299279 439300873 0.000000e+00 2449.0
6 TraesCS7A01G100800 chr4A 83.501 697 59 22 2218 2891 573110759 573111422 1.680000e-167 599.0
7 TraesCS7A01G100800 chr4A 90.155 386 34 4 2893 3276 445747697 445747314 1.760000e-137 499.0
8 TraesCS7A01G100800 chr4A 94.118 170 10 0 2723 2892 439300839 439301008 3.240000e-65 259.0
9 TraesCS7A01G100800 chr4A 92.941 170 12 0 2723 2892 542248513 542248344 7.020000e-62 248.0
10 TraesCS7A01G100800 chr6D 91.510 2921 180 39 1 2892 137229334 137232215 0.000000e+00 3958.0
11 TraesCS7A01G100800 chr5D 91.312 2912 209 29 1 2894 166261797 166258912 0.000000e+00 3936.0
12 TraesCS7A01G100800 chr5D 92.511 227 14 2 2666 2892 166258883 166258660 4.080000e-84 322.0
13 TraesCS7A01G100800 chr5D 91.960 199 14 2 2695 2892 88281831 88281634 8.950000e-71 278.0
14 TraesCS7A01G100800 chr5D 95.238 147 6 1 2611 2757 166258994 166258849 7.070000e-57 231.0
15 TraesCS7A01G100800 chr7B 92.607 2624 173 13 1 2618 164832959 164830351 0.000000e+00 3751.0
16 TraesCS7A01G100800 chr7B 80.463 389 63 12 2858 3241 400247114 400246734 5.350000e-73 285.0
17 TraesCS7A01G100800 chr3B 92.487 2622 184 9 1 2618 751582187 751579575 0.000000e+00 3738.0
18 TraesCS7A01G100800 chr3B 93.858 2263 135 3 1 2261 462251241 462253501 0.000000e+00 3406.0
19 TraesCS7A01G100800 chr3B 93.721 1959 121 2 1 1958 79242932 79240975 0.000000e+00 2935.0
20 TraesCS7A01G100800 chr6A 96.017 2159 79 5 1 2158 404885 402733 0.000000e+00 3504.0
21 TraesCS7A01G100800 chr6A 94.761 439 15 4 2458 2892 402602 402168 0.000000e+00 676.0
22 TraesCS7A01G100800 chr6A 96.641 387 13 0 2890 3276 571913597 571913983 0.000000e+00 643.0
23 TraesCS7A01G100800 chr5A 89.355 2048 150 34 870 2892 360014769 360012765 0.000000e+00 2512.0
24 TraesCS7A01G100800 chr5A 97.135 384 11 0 2893 3276 311156264 311155881 0.000000e+00 649.0
25 TraesCS7A01G100800 chr5A 96.875 384 12 0 2893 3276 54499616 54499999 0.000000e+00 643.0
26 TraesCS7A01G100800 chr5A 96.875 384 11 1 2893 3276 54486466 54486848 2.760000e-180 641.0
27 TraesCS7A01G100800 chr6B 94.754 629 25 7 2267 2892 3517672 3517049 0.000000e+00 972.0
28 TraesCS7A01G100800 chr6B 91.818 220 16 2 2674 2892 423108935 423108717 4.110000e-79 305.0
29 TraesCS7A01G100800 chr3A 97.135 384 11 0 2893 3276 661580697 661581080 0.000000e+00 649.0
30 TraesCS7A01G100800 chr2A 96.875 384 12 0 2893 3276 280256060 280255677 0.000000e+00 643.0
31 TraesCS7A01G100800 chr2B 92.952 227 13 3 2666 2892 666046586 666046363 8.760000e-86 327.0
32 TraesCS7A01G100800 chr2B 88.024 167 16 2 2726 2892 666046279 666046117 9.270000e-46 195.0
33 TraesCS7A01G100800 chr3D 86.813 91 6 4 2607 2697 501958117 501958201 2.690000e-16 97.1
34 TraesCS7A01G100800 chr2D 86.022 93 10 3 2605 2696 465845994 465846084 2.690000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G100800 chr7A 61916987 61920262 3275 True 6050.000000 6050 100.000000 1 3276 1 chr7A.!!$R2 3275
1 TraesCS7A01G100800 chr4A 542248344 542251169 2825 True 2216.500000 4185 93.827000 1 2892 2 chr4A.!!$R2 2891
2 TraesCS7A01G100800 chr4A 573107189 573111422 4233 False 1830.000000 3061 88.177500 115 2891 2 chr4A.!!$F2 2776
3 TraesCS7A01G100800 chr4A 439299279 439301008 1729 False 1354.000000 2449 94.205500 1091 2892 2 chr4A.!!$F1 1801
4 TraesCS7A01G100800 chr6D 137229334 137232215 2881 False 3958.000000 3958 91.510000 1 2892 1 chr6D.!!$F1 2891
5 TraesCS7A01G100800 chr5D 166258660 166261797 3137 True 1496.333333 3936 93.020333 1 2894 3 chr5D.!!$R2 2893
6 TraesCS7A01G100800 chr7B 164830351 164832959 2608 True 3751.000000 3751 92.607000 1 2618 1 chr7B.!!$R1 2617
7 TraesCS7A01G100800 chr3B 751579575 751582187 2612 True 3738.000000 3738 92.487000 1 2618 1 chr3B.!!$R2 2617
8 TraesCS7A01G100800 chr3B 462251241 462253501 2260 False 3406.000000 3406 93.858000 1 2261 1 chr3B.!!$F1 2260
9 TraesCS7A01G100800 chr3B 79240975 79242932 1957 True 2935.000000 2935 93.721000 1 1958 1 chr3B.!!$R1 1957
10 TraesCS7A01G100800 chr6A 402168 404885 2717 True 2090.000000 3504 95.389000 1 2892 2 chr6A.!!$R1 2891
11 TraesCS7A01G100800 chr5A 360012765 360014769 2004 True 2512.000000 2512 89.355000 870 2892 1 chr5A.!!$R2 2022
12 TraesCS7A01G100800 chr6B 3517049 3517672 623 True 972.000000 972 94.754000 2267 2892 1 chr6B.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.521242 GTTAAGCAACTGCCGATGCG 60.521 55.0 4.79 0.0 46.98 4.73 F
481 482 1.112315 TGGTCGCATTTGTTGGGCTT 61.112 50.0 0.00 0.0 38.14 4.35 F
1689 1701 0.613260 AAAGGCGCACAGATGGACTA 59.387 50.0 10.83 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1478 0.846693 GGGTATGGGGCACATCTTCT 59.153 55.0 4.97 0.0 41.03 2.85 R
2273 3756 0.532573 CAAGGAGCTCGCCAGTTCTA 59.467 55.0 7.83 0.0 30.68 2.10 R
3134 5123 0.035439 ACCCTTCGTAATGTGGGCTG 60.035 55.0 0.00 0.0 43.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.073314 AGAATTTGGCCAGTGCATTATATCT 58.927 36.000 5.11 0.00 40.13 1.98
130 131 0.521242 GTTAAGCAACTGCCGATGCG 60.521 55.000 4.79 0.00 46.98 4.73
313 314 1.533187 TGGGGTATGCTTCCATGGAT 58.467 50.000 17.06 2.53 32.85 3.41
411 412 2.162681 GACAACAAGTGCCCTATGCTT 58.837 47.619 0.00 0.00 42.00 3.91
477 478 2.514902 CGTATTGGTCGCATTTGTTGG 58.485 47.619 0.00 0.00 0.00 3.77
481 482 1.112315 TGGTCGCATTTGTTGGGCTT 61.112 50.000 0.00 0.00 38.14 4.35
582 584 7.264947 GGTGGGATTTATGAAACCATTAACAG 58.735 38.462 0.00 0.00 31.33 3.16
749 751 4.911522 CCAGGGGTAAGGAGGAACATATTA 59.088 45.833 0.00 0.00 0.00 0.98
752 754 5.974370 AGGGGTAAGGAGGAACATATTACAA 59.026 40.000 0.00 0.00 0.00 2.41
822 824 2.886523 TGTGTGGCTTTCTCTCAAATGG 59.113 45.455 0.00 0.00 0.00 3.16
918 922 6.507023 TGCTCCTTTCTTTGTCTCATTTTTC 58.493 36.000 0.00 0.00 0.00 2.29
930 934 9.838339 TTTGTCTCATTTTTCCTATATCTCCTC 57.162 33.333 0.00 0.00 0.00 3.71
991 995 7.336931 GCTACTCAACCCATGAAATCTAAAGAA 59.663 37.037 0.00 0.00 37.67 2.52
992 996 9.231297 CTACTCAACCCATGAAATCTAAAGAAA 57.769 33.333 0.00 0.00 37.67 2.52
1265 1273 4.400529 AACGCAAACTTGATTTTTCCCT 57.599 36.364 0.00 0.00 0.00 4.20
1328 1336 6.811665 CCGTCATTAGATGTTGAACTCAGTAA 59.188 38.462 0.00 0.00 0.00 2.24
1606 1616 5.611374 TCAAATTCTCACGACTCTTCCTTT 58.389 37.500 0.00 0.00 0.00 3.11
1641 1653 2.154462 CCAAGAAATTCGCCACTCACT 58.846 47.619 0.00 0.00 0.00 3.41
1689 1701 0.613260 AAAGGCGCACAGATGGACTA 59.387 50.000 10.83 0.00 0.00 2.59
1759 1771 0.827368 GAGCCCTCGAAGGACTGAAT 59.173 55.000 3.61 0.00 37.67 2.57
1764 1776 2.234908 CCCTCGAAGGACTGAATGACTT 59.765 50.000 0.00 0.00 37.67 3.01
1876 1888 2.107950 TGTTGGTCGGGCTTATTGAG 57.892 50.000 0.00 0.00 0.00 3.02
2108 2121 5.920273 GCTACTTTGCACAAGCTTAAATTGA 59.080 36.000 0.00 0.00 42.74 2.57
2137 2150 3.736100 CGCCGGCAAGCACATGAA 61.736 61.111 28.98 0.00 0.00 2.57
2141 2154 2.338015 CGGCAAGCACATGAAGCCT 61.338 57.895 0.00 0.00 43.07 4.58
2227 3710 6.603237 AGGCTTGCTGAATTTAAACAAAAC 57.397 33.333 0.00 0.00 0.00 2.43
2273 3756 2.017049 GTCAGCTGTTGAACAACCTGT 58.983 47.619 14.67 0.00 40.46 4.00
2309 3792 2.125202 TTGAGAGCGCGTCGACTTCA 62.125 55.000 14.70 5.03 0.00 3.02
2455 3957 1.227002 GTGCTAGTACGCCAGCCTC 60.227 63.158 12.63 4.92 36.95 4.70
2591 4099 5.790593 ACGGTTTAAGCTTATGAAGTCTGA 58.209 37.500 7.08 0.00 0.00 3.27
2604 4136 8.635765 TTATGAAGTCTGAAGCCTGTTTTATT 57.364 30.769 0.00 0.00 0.00 1.40
2762 4656 7.812648 TCGTAAGTTTATTGGAGTGATTTTGG 58.187 34.615 0.00 0.00 39.48 3.28
2855 4752 4.836125 ACTCGTAAGTCGTTGGAGTAAA 57.164 40.909 0.00 0.00 36.28 2.01
2856 4753 5.186996 ACTCGTAAGTCGTTGGAGTAAAA 57.813 39.130 0.00 0.00 36.28 1.52
2857 4754 5.591099 ACTCGTAAGTCGTTGGAGTAAAAA 58.409 37.500 0.00 0.00 36.28 1.94
2898 4887 1.909376 CTCGTGAGGGTATTGTCGTG 58.091 55.000 0.00 0.00 0.00 4.35
2899 4888 0.528924 TCGTGAGGGTATTGTCGTGG 59.471 55.000 0.00 0.00 0.00 4.94
2900 4889 0.245539 CGTGAGGGTATTGTCGTGGT 59.754 55.000 0.00 0.00 0.00 4.16
2901 4890 1.337447 CGTGAGGGTATTGTCGTGGTT 60.337 52.381 0.00 0.00 0.00 3.67
2902 4891 2.344025 GTGAGGGTATTGTCGTGGTTC 58.656 52.381 0.00 0.00 0.00 3.62
2903 4892 2.028385 GTGAGGGTATTGTCGTGGTTCT 60.028 50.000 0.00 0.00 0.00 3.01
2904 4893 3.194116 GTGAGGGTATTGTCGTGGTTCTA 59.806 47.826 0.00 0.00 0.00 2.10
2905 4894 3.833650 TGAGGGTATTGTCGTGGTTCTAA 59.166 43.478 0.00 0.00 0.00 2.10
2906 4895 4.179298 GAGGGTATTGTCGTGGTTCTAAC 58.821 47.826 0.00 0.00 0.00 2.34
2907 4896 3.836562 AGGGTATTGTCGTGGTTCTAACT 59.163 43.478 0.00 0.00 0.00 2.24
2908 4897 4.081807 AGGGTATTGTCGTGGTTCTAACTC 60.082 45.833 0.00 0.00 0.00 3.01
2909 4898 4.081807 GGGTATTGTCGTGGTTCTAACTCT 60.082 45.833 0.00 0.00 0.00 3.24
2910 4899 4.863131 GGTATTGTCGTGGTTCTAACTCTG 59.137 45.833 0.00 0.00 0.00 3.35
2911 4900 4.866508 ATTGTCGTGGTTCTAACTCTGA 57.133 40.909 0.00 0.00 0.00 3.27
2912 4901 3.637998 TGTCGTGGTTCTAACTCTGAC 57.362 47.619 0.00 0.24 0.00 3.51
2913 4902 2.953648 TGTCGTGGTTCTAACTCTGACA 59.046 45.455 9.09 9.09 33.14 3.58
2914 4903 3.004419 TGTCGTGGTTCTAACTCTGACAG 59.996 47.826 0.00 0.00 31.99 3.51
2915 4904 3.004524 GTCGTGGTTCTAACTCTGACAGT 59.995 47.826 1.59 0.00 36.64 3.55
2916 4905 3.004419 TCGTGGTTCTAACTCTGACAGTG 59.996 47.826 1.59 2.34 34.56 3.66
2917 4906 3.004419 CGTGGTTCTAACTCTGACAGTGA 59.996 47.826 11.37 0.00 34.56 3.41
2918 4907 4.321304 CGTGGTTCTAACTCTGACAGTGAT 60.321 45.833 11.37 2.19 34.56 3.06
2919 4908 4.926238 GTGGTTCTAACTCTGACAGTGATG 59.074 45.833 11.37 1.75 34.56 3.07
2920 4909 4.588951 TGGTTCTAACTCTGACAGTGATGT 59.411 41.667 11.37 0.31 34.56 3.06
2921 4910 5.773176 TGGTTCTAACTCTGACAGTGATGTA 59.227 40.000 11.37 0.74 34.56 2.29
2922 4911 6.071896 TGGTTCTAACTCTGACAGTGATGTAG 60.072 42.308 11.37 9.06 34.56 2.74
2923 4912 6.326375 GTTCTAACTCTGACAGTGATGTAGG 58.674 44.000 11.37 1.06 34.56 3.18
2924 4913 4.950475 TCTAACTCTGACAGTGATGTAGGG 59.050 45.833 11.37 0.00 34.56 3.53
2925 4914 2.461695 ACTCTGACAGTGATGTAGGGG 58.538 52.381 11.37 0.00 32.26 4.79
2926 4915 1.759445 CTCTGACAGTGATGTAGGGGG 59.241 57.143 1.59 0.00 0.00 5.40
2942 4931 1.057471 GGGGGTAAGTATGGAGAGGC 58.943 60.000 0.00 0.00 0.00 4.70
2943 4932 0.680061 GGGGTAAGTATGGAGAGGCG 59.320 60.000 0.00 0.00 0.00 5.52
2944 4933 1.700955 GGGTAAGTATGGAGAGGCGA 58.299 55.000 0.00 0.00 0.00 5.54
2945 4934 1.614413 GGGTAAGTATGGAGAGGCGAG 59.386 57.143 0.00 0.00 0.00 5.03
2946 4935 1.614413 GGTAAGTATGGAGAGGCGAGG 59.386 57.143 0.00 0.00 0.00 4.63
2947 4936 2.308690 GTAAGTATGGAGAGGCGAGGT 58.691 52.381 0.00 0.00 0.00 3.85
2948 4937 1.404843 AAGTATGGAGAGGCGAGGTC 58.595 55.000 0.00 0.00 0.00 3.85
2949 4938 0.553819 AGTATGGAGAGGCGAGGTCT 59.446 55.000 0.00 0.00 0.00 3.85
2950 4939 1.063567 AGTATGGAGAGGCGAGGTCTT 60.064 52.381 0.00 0.00 0.00 3.01
2951 4940 2.175069 AGTATGGAGAGGCGAGGTCTTA 59.825 50.000 0.00 0.00 0.00 2.10
2952 4941 1.698506 ATGGAGAGGCGAGGTCTTAG 58.301 55.000 0.00 0.00 0.00 2.18
2953 4942 1.038130 TGGAGAGGCGAGGTCTTAGC 61.038 60.000 0.00 0.00 0.00 3.09
2954 4943 0.753848 GGAGAGGCGAGGTCTTAGCT 60.754 60.000 0.00 0.00 0.00 3.32
2955 4944 1.477195 GGAGAGGCGAGGTCTTAGCTA 60.477 57.143 0.00 0.00 0.00 3.32
2956 4945 2.510613 GAGAGGCGAGGTCTTAGCTAT 58.489 52.381 0.00 0.00 0.00 2.97
2957 4946 2.227865 GAGAGGCGAGGTCTTAGCTATG 59.772 54.545 0.00 0.00 0.00 2.23
2958 4947 1.271102 GAGGCGAGGTCTTAGCTATGG 59.729 57.143 6.78 0.00 0.00 2.74
2959 4948 1.133450 AGGCGAGGTCTTAGCTATGGA 60.133 52.381 6.78 0.36 0.00 3.41
2960 4949 1.271102 GGCGAGGTCTTAGCTATGGAG 59.729 57.143 6.78 0.00 0.00 3.86
2961 4950 2.231529 GCGAGGTCTTAGCTATGGAGA 58.768 52.381 6.78 0.00 0.00 3.71
2962 4951 2.227865 GCGAGGTCTTAGCTATGGAGAG 59.772 54.545 6.78 0.00 0.00 3.20
2963 4952 2.817258 CGAGGTCTTAGCTATGGAGAGG 59.183 54.545 6.78 0.00 0.00 3.69
2964 4953 3.749310 CGAGGTCTTAGCTATGGAGAGGT 60.749 52.174 6.78 0.00 0.00 3.85
2965 4954 4.219919 GAGGTCTTAGCTATGGAGAGGTT 58.780 47.826 6.78 0.00 0.00 3.50
2966 4955 3.964031 AGGTCTTAGCTATGGAGAGGTTG 59.036 47.826 6.78 0.00 0.00 3.77
2967 4956 3.707102 GGTCTTAGCTATGGAGAGGTTGT 59.293 47.826 6.78 0.00 0.00 3.32
2968 4957 4.894114 GGTCTTAGCTATGGAGAGGTTGTA 59.106 45.833 6.78 0.00 0.00 2.41
2969 4958 5.363005 GGTCTTAGCTATGGAGAGGTTGTAA 59.637 44.000 6.78 0.00 0.00 2.41
2970 4959 6.461788 GGTCTTAGCTATGGAGAGGTTGTAAG 60.462 46.154 6.78 0.00 0.00 2.34
2971 4960 5.598830 TCTTAGCTATGGAGAGGTTGTAAGG 59.401 44.000 6.78 0.00 0.00 2.69
2972 4961 3.995636 AGCTATGGAGAGGTTGTAAGGA 58.004 45.455 0.00 0.00 0.00 3.36
2973 4962 3.707102 AGCTATGGAGAGGTTGTAAGGAC 59.293 47.826 0.00 0.00 0.00 3.85
2974 4963 3.491104 GCTATGGAGAGGTTGTAAGGACG 60.491 52.174 0.00 0.00 0.00 4.79
2975 4964 0.606604 TGGAGAGGTTGTAAGGACGC 59.393 55.000 0.00 0.00 0.00 5.19
2976 4965 0.606604 GGAGAGGTTGTAAGGACGCA 59.393 55.000 0.00 0.00 0.00 5.24
2977 4966 1.001633 GGAGAGGTTGTAAGGACGCAA 59.998 52.381 0.00 0.00 0.00 4.85
2979 4968 1.002087 AGAGGTTGTAAGGACGCAAGG 59.998 52.381 0.00 0.00 46.39 3.61
2980 4969 0.763035 AGGTTGTAAGGACGCAAGGT 59.237 50.000 0.00 0.00 46.39 3.50
2981 4970 1.142262 AGGTTGTAAGGACGCAAGGTT 59.858 47.619 0.00 0.00 46.39 3.50
2982 4971 1.951602 GGTTGTAAGGACGCAAGGTTT 59.048 47.619 0.00 0.00 46.39 3.27
2983 4972 3.140623 GGTTGTAAGGACGCAAGGTTTA 58.859 45.455 0.00 0.00 46.39 2.01
2984 4973 3.058708 GGTTGTAAGGACGCAAGGTTTAC 60.059 47.826 0.00 0.00 46.39 2.01
2985 4974 2.406130 TGTAAGGACGCAAGGTTTACG 58.594 47.619 0.00 0.00 46.39 3.18
2986 4975 2.035704 TGTAAGGACGCAAGGTTTACGA 59.964 45.455 0.00 0.00 46.39 3.43
2987 4976 1.792006 AAGGACGCAAGGTTTACGAG 58.208 50.000 0.00 0.00 46.39 4.18
2988 4977 0.677842 AGGACGCAAGGTTTACGAGT 59.322 50.000 0.00 0.00 46.39 4.18
2989 4978 1.069668 AGGACGCAAGGTTTACGAGTT 59.930 47.619 0.00 0.00 46.39 3.01
2990 4979 1.458445 GGACGCAAGGTTTACGAGTTC 59.542 52.381 0.00 0.00 46.39 3.01
2991 4980 2.129607 GACGCAAGGTTTACGAGTTCA 58.870 47.619 0.00 0.00 46.39 3.18
2992 4981 2.132762 ACGCAAGGTTTACGAGTTCAG 58.867 47.619 0.00 0.00 46.39 3.02
2993 4982 1.459592 CGCAAGGTTTACGAGTTCAGG 59.540 52.381 0.00 0.00 0.00 3.86
2994 4983 1.197036 GCAAGGTTTACGAGTTCAGGC 59.803 52.381 0.00 0.00 0.00 4.85
2995 4984 1.804748 CAAGGTTTACGAGTTCAGGCC 59.195 52.381 0.00 0.00 0.00 5.19
2996 4985 0.323957 AGGTTTACGAGTTCAGGCCC 59.676 55.000 0.00 0.00 0.00 5.80
2997 4986 0.323957 GGTTTACGAGTTCAGGCCCT 59.676 55.000 0.00 0.00 0.00 5.19
2998 4987 1.271217 GGTTTACGAGTTCAGGCCCTT 60.271 52.381 0.00 0.00 0.00 3.95
2999 4988 2.074576 GTTTACGAGTTCAGGCCCTTC 58.925 52.381 0.00 0.00 0.00 3.46
3000 4989 1.640917 TTACGAGTTCAGGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
3001 4990 1.183549 TACGAGTTCAGGCCCTTCTC 58.816 55.000 0.00 1.73 0.00 2.87
3002 4991 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
3003 4992 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
3004 4993 1.229209 AGTTCAGGCCCTTCTCGGA 60.229 57.895 0.00 0.00 33.16 4.55
3005 4994 0.836400 AGTTCAGGCCCTTCTCGGAA 60.836 55.000 0.00 0.00 33.16 4.30
3006 4995 0.391793 GTTCAGGCCCTTCTCGGAAG 60.392 60.000 0.00 6.66 33.16 3.46
3007 4996 0.544357 TTCAGGCCCTTCTCGGAAGA 60.544 55.000 13.28 0.00 39.12 2.87
3008 4997 0.544357 TCAGGCCCTTCTCGGAAGAA 60.544 55.000 13.28 1.41 41.32 2.52
3018 5007 3.329929 TCTCGGAAGAAGTAAAAGCCC 57.670 47.619 0.00 0.00 41.32 5.19
3019 5008 2.904434 TCTCGGAAGAAGTAAAAGCCCT 59.096 45.455 0.00 0.00 41.32 5.19
3020 5009 4.091549 TCTCGGAAGAAGTAAAAGCCCTA 58.908 43.478 0.00 0.00 41.32 3.53
3021 5010 4.081807 TCTCGGAAGAAGTAAAAGCCCTAC 60.082 45.833 0.00 0.00 41.32 3.18
3022 5011 2.928116 CGGAAGAAGTAAAAGCCCTACG 59.072 50.000 0.00 0.00 0.00 3.51
3023 5012 3.615834 CGGAAGAAGTAAAAGCCCTACGT 60.616 47.826 0.00 0.00 0.00 3.57
3024 5013 3.931468 GGAAGAAGTAAAAGCCCTACGTC 59.069 47.826 0.00 0.00 0.00 4.34
3025 5014 4.322574 GGAAGAAGTAAAAGCCCTACGTCT 60.323 45.833 0.00 1.70 39.01 4.18
3026 5015 4.453177 AGAAGTAAAAGCCCTACGTCTC 57.547 45.455 0.00 0.00 34.34 3.36
3027 5016 2.935481 AGTAAAAGCCCTACGTCTCG 57.065 50.000 0.00 0.00 0.00 4.04
3028 5017 1.475682 AGTAAAAGCCCTACGTCTCGG 59.524 52.381 0.00 0.00 0.00 4.63
3029 5018 1.474077 GTAAAAGCCCTACGTCTCGGA 59.526 52.381 0.00 0.00 0.00 4.55
3030 5019 0.531200 AAAAGCCCTACGTCTCGGAG 59.469 55.000 0.00 0.00 37.59 4.63
3031 5020 1.946475 AAAGCCCTACGTCTCGGAGC 61.946 60.000 0.00 0.00 36.34 4.70
3032 5021 3.902086 GCCCTACGTCTCGGAGCC 61.902 72.222 0.00 0.00 36.34 4.70
3033 5022 3.217743 CCCTACGTCTCGGAGCCC 61.218 72.222 0.00 0.00 36.34 5.19
3051 5040 3.148279 GGAGGCGGTCGACTGGAT 61.148 66.667 25.20 5.10 30.74 3.41
3052 5041 2.722201 GGAGGCGGTCGACTGGATT 61.722 63.158 25.20 3.32 30.74 3.01
3053 5042 1.389609 GGAGGCGGTCGACTGGATTA 61.390 60.000 25.20 0.00 30.74 1.75
3054 5043 0.674534 GAGGCGGTCGACTGGATTAT 59.325 55.000 25.20 0.92 30.74 1.28
3055 5044 0.389391 AGGCGGTCGACTGGATTATG 59.611 55.000 25.20 2.50 28.47 1.90
3056 5045 0.104304 GGCGGTCGACTGGATTATGT 59.896 55.000 25.20 0.00 0.00 2.29
3057 5046 1.209128 GCGGTCGACTGGATTATGTG 58.791 55.000 25.20 0.09 0.00 3.21
3058 5047 1.470979 GCGGTCGACTGGATTATGTGT 60.471 52.381 25.20 0.00 0.00 3.72
3059 5048 2.193447 CGGTCGACTGGATTATGTGTG 58.807 52.381 16.99 0.00 0.00 3.82
3060 5049 2.416836 CGGTCGACTGGATTATGTGTGT 60.417 50.000 16.99 0.00 0.00 3.72
3061 5050 3.181494 CGGTCGACTGGATTATGTGTGTA 60.181 47.826 16.99 0.00 0.00 2.90
3062 5051 4.499188 CGGTCGACTGGATTATGTGTGTAT 60.499 45.833 16.99 0.00 0.00 2.29
3063 5052 4.745125 GGTCGACTGGATTATGTGTGTATG 59.255 45.833 16.46 0.00 0.00 2.39
3064 5053 5.451381 GGTCGACTGGATTATGTGTGTATGA 60.451 44.000 16.46 0.00 0.00 2.15
3065 5054 5.687730 GTCGACTGGATTATGTGTGTATGAG 59.312 44.000 8.70 0.00 0.00 2.90
3066 5055 5.359860 TCGACTGGATTATGTGTGTATGAGT 59.640 40.000 0.00 0.00 0.00 3.41
3067 5056 6.042777 CGACTGGATTATGTGTGTATGAGTT 58.957 40.000 0.00 0.00 0.00 3.01
3068 5057 7.067737 TCGACTGGATTATGTGTGTATGAGTTA 59.932 37.037 0.00 0.00 0.00 2.24
3069 5058 7.167635 CGACTGGATTATGTGTGTATGAGTTAC 59.832 40.741 0.00 0.00 0.00 2.50
3070 5059 7.847096 ACTGGATTATGTGTGTATGAGTTACA 58.153 34.615 0.00 0.00 38.50 2.41
3071 5060 7.981789 ACTGGATTATGTGTGTATGAGTTACAG 59.018 37.037 0.00 0.00 41.45 2.74
3072 5061 8.073467 TGGATTATGTGTGTATGAGTTACAGA 57.927 34.615 0.00 0.00 41.45 3.41
3073 5062 8.197439 TGGATTATGTGTGTATGAGTTACAGAG 58.803 37.037 0.00 0.00 41.45 3.35
3074 5063 7.653713 GGATTATGTGTGTATGAGTTACAGAGG 59.346 40.741 0.00 0.00 41.45 3.69
3075 5064 7.476540 TTATGTGTGTATGAGTTACAGAGGT 57.523 36.000 0.00 0.00 41.45 3.85
3076 5065 5.386958 TGTGTGTATGAGTTACAGAGGTC 57.613 43.478 0.00 0.00 41.45 3.85
3077 5066 4.219944 TGTGTGTATGAGTTACAGAGGTCC 59.780 45.833 0.00 0.00 41.45 4.46
3078 5067 3.442625 TGTGTATGAGTTACAGAGGTCCG 59.557 47.826 0.00 0.00 41.45 4.79
3079 5068 3.693085 GTGTATGAGTTACAGAGGTCCGA 59.307 47.826 0.00 0.00 41.45 4.55
3080 5069 4.157289 GTGTATGAGTTACAGAGGTCCGAA 59.843 45.833 0.00 0.00 41.45 4.30
3081 5070 3.870633 ATGAGTTACAGAGGTCCGAAC 57.129 47.619 0.00 0.00 0.00 3.95
3082 5071 1.891150 TGAGTTACAGAGGTCCGAACC 59.109 52.381 0.00 0.00 46.87 3.62
3083 5072 8.943302 TGTATGAGTTACAGAGGTCCGAACCT 62.943 46.154 0.00 0.00 46.13 3.50
3091 5080 2.823628 GGTCCGAACCTTTGTCTCG 58.176 57.895 0.00 0.00 42.80 4.04
3095 5084 3.123674 CGAACCTTTGTCTCGGAGG 57.876 57.895 4.96 0.00 36.62 4.30
3096 5085 0.601558 CGAACCTTTGTCTCGGAGGA 59.398 55.000 4.96 0.00 34.61 3.71
3097 5086 1.402984 CGAACCTTTGTCTCGGAGGAG 60.403 57.143 4.96 0.00 41.89 3.69
3098 5087 0.977395 AACCTTTGTCTCGGAGGAGG 59.023 55.000 4.96 9.94 40.85 4.30
3099 5088 0.905337 ACCTTTGTCTCGGAGGAGGG 60.905 60.000 4.96 4.65 40.85 4.30
3100 5089 1.617947 CCTTTGTCTCGGAGGAGGGG 61.618 65.000 4.96 0.00 40.85 4.79
3101 5090 1.612442 TTTGTCTCGGAGGAGGGGG 60.612 63.158 4.96 0.00 40.85 5.40
3118 5107 3.983044 GGGGGTGGCTTATATAGAGTG 57.017 52.381 0.00 0.00 0.00 3.51
3119 5108 2.027100 GGGGGTGGCTTATATAGAGTGC 60.027 54.545 0.00 0.00 0.00 4.40
3120 5109 2.353803 GGGGTGGCTTATATAGAGTGCG 60.354 54.545 0.00 0.00 0.00 5.34
3121 5110 2.338500 GGTGGCTTATATAGAGTGCGC 58.662 52.381 0.00 0.00 0.00 6.09
3122 5111 2.338500 GTGGCTTATATAGAGTGCGCC 58.662 52.381 4.18 0.00 36.64 6.53
3123 5112 1.967779 TGGCTTATATAGAGTGCGCCA 59.032 47.619 4.18 0.00 43.12 5.69
3124 5113 2.029020 TGGCTTATATAGAGTGCGCCAG 60.029 50.000 4.18 0.00 40.76 4.85
3125 5114 2.611518 GCTTATATAGAGTGCGCCAGG 58.388 52.381 4.18 0.00 0.00 4.45
3126 5115 2.231478 GCTTATATAGAGTGCGCCAGGA 59.769 50.000 4.18 0.00 0.00 3.86
3127 5116 3.839293 CTTATATAGAGTGCGCCAGGAC 58.161 50.000 4.18 0.00 39.15 3.85
3128 5117 0.969894 ATATAGAGTGCGCCAGGACC 59.030 55.000 4.18 0.00 39.75 4.46
3129 5118 1.113517 TATAGAGTGCGCCAGGACCC 61.114 60.000 4.18 0.00 39.75 4.46
3145 5134 4.122149 CCCGGCCAGCCCACATTA 62.122 66.667 2.24 0.00 0.00 1.90
3146 5135 2.828549 CCGGCCAGCCCACATTAC 60.829 66.667 2.24 0.00 0.00 1.89
3147 5136 3.202001 CGGCCAGCCCACATTACG 61.202 66.667 2.24 0.00 0.00 3.18
3148 5137 2.270850 GGCCAGCCCACATTACGA 59.729 61.111 0.00 0.00 0.00 3.43
3149 5138 1.377987 GGCCAGCCCACATTACGAA 60.378 57.895 0.00 0.00 0.00 3.85
3150 5139 1.376609 GGCCAGCCCACATTACGAAG 61.377 60.000 0.00 0.00 0.00 3.79
3151 5140 1.376609 GCCAGCCCACATTACGAAGG 61.377 60.000 0.00 0.00 0.00 3.46
3152 5141 0.748005 CCAGCCCACATTACGAAGGG 60.748 60.000 0.00 0.00 44.37 3.95
3153 5142 0.035439 CAGCCCACATTACGAAGGGT 60.035 55.000 0.00 0.00 43.42 4.34
3154 5143 0.696501 AGCCCACATTACGAAGGGTT 59.303 50.000 0.00 0.00 43.42 4.11
3155 5144 1.092348 GCCCACATTACGAAGGGTTC 58.908 55.000 0.00 0.00 43.42 3.62
3156 5145 1.612199 GCCCACATTACGAAGGGTTCA 60.612 52.381 0.00 0.00 43.42 3.18
3157 5146 2.785562 CCCACATTACGAAGGGTTCAA 58.214 47.619 0.00 0.00 36.52 2.69
3158 5147 3.352648 CCCACATTACGAAGGGTTCAAT 58.647 45.455 0.00 0.00 36.52 2.57
3159 5148 3.128589 CCCACATTACGAAGGGTTCAATG 59.871 47.826 0.00 0.00 36.52 2.82
3160 5149 3.756434 CCACATTACGAAGGGTTCAATGT 59.244 43.478 0.00 0.00 36.99 2.71
3161 5150 4.938832 CCACATTACGAAGGGTTCAATGTA 59.061 41.667 0.00 0.00 35.41 2.29
3162 5151 5.163794 CCACATTACGAAGGGTTCAATGTAC 60.164 44.000 0.00 0.00 35.41 2.90
3163 5152 5.410132 CACATTACGAAGGGTTCAATGTACA 59.590 40.000 0.00 0.00 35.41 2.90
3164 5153 6.093495 CACATTACGAAGGGTTCAATGTACAT 59.907 38.462 1.41 1.41 35.41 2.29
3165 5154 6.657541 ACATTACGAAGGGTTCAATGTACATT 59.342 34.615 15.47 15.47 35.67 2.71
3166 5155 7.825270 ACATTACGAAGGGTTCAATGTACATTA 59.175 33.333 20.39 3.83 35.67 1.90
3167 5156 8.670135 CATTACGAAGGGTTCAATGTACATTAA 58.330 33.333 20.39 3.73 0.00 1.40
3168 5157 6.737254 ACGAAGGGTTCAATGTACATTAAG 57.263 37.500 20.39 9.88 0.00 1.85
3169 5158 5.646360 ACGAAGGGTTCAATGTACATTAAGG 59.354 40.000 20.39 9.18 0.00 2.69
3170 5159 5.646360 CGAAGGGTTCAATGTACATTAAGGT 59.354 40.000 20.39 0.00 0.00 3.50
3171 5160 6.819649 CGAAGGGTTCAATGTACATTAAGGTA 59.180 38.462 20.39 0.00 0.00 3.08
3172 5161 7.011109 CGAAGGGTTCAATGTACATTAAGGTAG 59.989 40.741 20.39 7.78 0.00 3.18
3173 5162 6.659824 AGGGTTCAATGTACATTAAGGTAGG 58.340 40.000 20.39 7.09 0.00 3.18
3174 5163 5.826208 GGGTTCAATGTACATTAAGGTAGGG 59.174 44.000 20.39 6.39 0.00 3.53
3175 5164 5.298527 GGTTCAATGTACATTAAGGTAGGGC 59.701 44.000 20.39 4.70 0.00 5.19
3176 5165 5.702065 TCAATGTACATTAAGGTAGGGCA 57.298 39.130 20.39 0.00 0.00 5.36
3177 5166 6.260700 TCAATGTACATTAAGGTAGGGCAT 57.739 37.500 20.39 0.00 0.00 4.40
3178 5167 6.668645 TCAATGTACATTAAGGTAGGGCATT 58.331 36.000 20.39 4.77 0.00 3.56
3179 5168 7.807198 TCAATGTACATTAAGGTAGGGCATTA 58.193 34.615 20.39 2.95 0.00 1.90
3180 5169 7.717875 TCAATGTACATTAAGGTAGGGCATTAC 59.282 37.037 20.39 0.00 0.00 1.89
3181 5170 6.818281 TGTACATTAAGGTAGGGCATTACT 57.182 37.500 0.00 0.00 0.00 2.24
3182 5171 6.588204 TGTACATTAAGGTAGGGCATTACTG 58.412 40.000 0.00 0.00 32.60 2.74
3183 5172 5.968676 ACATTAAGGTAGGGCATTACTGA 57.031 39.130 0.00 0.00 31.41 3.41
3184 5173 6.515512 ACATTAAGGTAGGGCATTACTGAT 57.484 37.500 0.00 0.00 31.41 2.90
3185 5174 7.626999 ACATTAAGGTAGGGCATTACTGATA 57.373 36.000 0.00 0.00 31.41 2.15
3186 5175 8.041143 ACATTAAGGTAGGGCATTACTGATAA 57.959 34.615 0.00 0.00 31.41 1.75
3187 5176 8.669571 ACATTAAGGTAGGGCATTACTGATAAT 58.330 33.333 0.00 0.00 31.41 1.28
3203 5192 7.721286 ACTGATAATGCTAGTAATGAAGTGC 57.279 36.000 0.00 0.00 0.00 4.40
3204 5193 7.504403 ACTGATAATGCTAGTAATGAAGTGCT 58.496 34.615 0.00 0.00 0.00 4.40
3205 5194 8.642432 ACTGATAATGCTAGTAATGAAGTGCTA 58.358 33.333 0.00 0.00 0.00 3.49
3206 5195 9.650539 CTGATAATGCTAGTAATGAAGTGCTAT 57.349 33.333 0.00 0.00 0.00 2.97
3207 5196 9.428097 TGATAATGCTAGTAATGAAGTGCTATG 57.572 33.333 0.00 0.00 0.00 2.23
3208 5197 9.645059 GATAATGCTAGTAATGAAGTGCTATGA 57.355 33.333 0.00 0.00 0.00 2.15
3210 5199 7.902387 ATGCTAGTAATGAAGTGCTATGATG 57.098 36.000 0.00 0.00 0.00 3.07
3211 5200 7.054491 TGCTAGTAATGAAGTGCTATGATGA 57.946 36.000 0.00 0.00 0.00 2.92
3212 5201 6.925718 TGCTAGTAATGAAGTGCTATGATGAC 59.074 38.462 0.00 0.00 0.00 3.06
3213 5202 6.367422 GCTAGTAATGAAGTGCTATGATGACC 59.633 42.308 0.00 0.00 0.00 4.02
3214 5203 6.239217 AGTAATGAAGTGCTATGATGACCA 57.761 37.500 0.00 0.00 0.00 4.02
3215 5204 6.835174 AGTAATGAAGTGCTATGATGACCAT 58.165 36.000 0.00 0.00 39.25 3.55
3216 5205 7.966812 AGTAATGAAGTGCTATGATGACCATA 58.033 34.615 0.00 0.00 36.71 2.74
3217 5206 8.432013 AGTAATGAAGTGCTATGATGACCATAA 58.568 33.333 0.00 0.00 37.30 1.90
3218 5207 9.056005 GTAATGAAGTGCTATGATGACCATAAA 57.944 33.333 0.00 0.00 37.30 1.40
3219 5208 8.523915 AATGAAGTGCTATGATGACCATAAAA 57.476 30.769 0.00 0.00 37.30 1.52
3220 5209 7.558161 TGAAGTGCTATGATGACCATAAAAG 57.442 36.000 0.00 0.00 37.30 2.27
3221 5210 6.038603 TGAAGTGCTATGATGACCATAAAAGC 59.961 38.462 0.00 0.00 37.30 3.51
3222 5211 5.688807 AGTGCTATGATGACCATAAAAGCT 58.311 37.500 9.70 0.00 37.30 3.74
3223 5212 6.830912 AGTGCTATGATGACCATAAAAGCTA 58.169 36.000 0.00 0.00 37.30 3.32
3224 5213 6.708054 AGTGCTATGATGACCATAAAAGCTAC 59.292 38.462 0.00 7.38 37.30 3.58
3225 5214 6.708054 GTGCTATGATGACCATAAAAGCTACT 59.292 38.462 0.00 0.00 37.30 2.57
3226 5215 7.227512 GTGCTATGATGACCATAAAAGCTACTT 59.772 37.037 0.00 0.00 37.30 2.24
3227 5216 8.428852 TGCTATGATGACCATAAAAGCTACTTA 58.571 33.333 0.00 0.00 37.30 2.24
3228 5217 9.273016 GCTATGATGACCATAAAAGCTACTTAA 57.727 33.333 0.00 0.00 37.30 1.85
3231 5220 9.851686 ATGATGACCATAAAAGCTACTTAATGA 57.148 29.630 0.00 0.00 32.72 2.57
3232 5221 9.109393 TGATGACCATAAAAGCTACTTAATGAC 57.891 33.333 0.00 0.00 0.00 3.06
3233 5222 7.859325 TGACCATAAAAGCTACTTAATGACC 57.141 36.000 0.00 0.00 0.00 4.02
3234 5223 6.537301 TGACCATAAAAGCTACTTAATGACCG 59.463 38.462 0.00 0.00 0.00 4.79
3235 5224 6.646267 ACCATAAAAGCTACTTAATGACCGA 58.354 36.000 0.00 0.00 0.00 4.69
3236 5225 6.537660 ACCATAAAAGCTACTTAATGACCGAC 59.462 38.462 0.00 0.00 0.00 4.79
3237 5226 6.018180 CCATAAAAGCTACTTAATGACCGACC 60.018 42.308 0.00 0.00 0.00 4.79
3238 5227 2.865343 AGCTACTTAATGACCGACCG 57.135 50.000 0.00 0.00 0.00 4.79
3239 5228 2.097825 AGCTACTTAATGACCGACCGT 58.902 47.619 0.00 0.00 0.00 4.83
3240 5229 2.494870 AGCTACTTAATGACCGACCGTT 59.505 45.455 0.00 0.00 0.00 4.44
3241 5230 3.696051 AGCTACTTAATGACCGACCGTTA 59.304 43.478 0.00 0.00 0.00 3.18
3242 5231 4.158394 AGCTACTTAATGACCGACCGTTAA 59.842 41.667 0.00 0.00 0.00 2.01
3243 5232 5.045872 GCTACTTAATGACCGACCGTTAAT 58.954 41.667 0.00 0.00 30.03 1.40
3244 5233 5.051240 GCTACTTAATGACCGACCGTTAATG 60.051 44.000 0.00 0.00 30.03 1.90
3245 5234 4.824289 ACTTAATGACCGACCGTTAATGT 58.176 39.130 0.00 0.00 30.03 2.71
3246 5235 4.628333 ACTTAATGACCGACCGTTAATGTG 59.372 41.667 0.00 0.00 30.03 3.21
3247 5236 1.365699 ATGACCGACCGTTAATGTGC 58.634 50.000 0.00 0.00 0.00 4.57
3248 5237 1.009903 TGACCGACCGTTAATGTGCG 61.010 55.000 0.00 0.00 0.00 5.34
3256 5245 1.710013 CGTTAATGTGCGGAGTGACT 58.290 50.000 0.00 0.00 0.00 3.41
3257 5246 2.066262 CGTTAATGTGCGGAGTGACTT 58.934 47.619 0.00 0.00 0.00 3.01
3258 5247 2.478894 CGTTAATGTGCGGAGTGACTTT 59.521 45.455 0.00 0.00 0.00 2.66
3259 5248 3.676172 CGTTAATGTGCGGAGTGACTTTA 59.324 43.478 0.00 0.00 0.00 1.85
3260 5249 4.201589 CGTTAATGTGCGGAGTGACTTTAG 60.202 45.833 0.00 0.00 0.00 1.85
3261 5250 2.386661 ATGTGCGGAGTGACTTTAGG 57.613 50.000 0.00 0.00 0.00 2.69
3262 5251 1.045407 TGTGCGGAGTGACTTTAGGT 58.955 50.000 0.00 0.00 0.00 3.08
3263 5252 1.000506 TGTGCGGAGTGACTTTAGGTC 59.999 52.381 0.00 0.00 44.70 3.85
3264 5253 1.272769 GTGCGGAGTGACTTTAGGTCT 59.727 52.381 0.00 0.00 44.74 3.85
3265 5254 1.544691 TGCGGAGTGACTTTAGGTCTC 59.455 52.381 0.00 0.00 44.74 3.36
3266 5255 1.135053 GCGGAGTGACTTTAGGTCTCC 60.135 57.143 0.00 0.00 44.74 3.71
3267 5256 2.448453 CGGAGTGACTTTAGGTCTCCT 58.552 52.381 0.00 0.00 44.74 3.69
3268 5257 3.618351 CGGAGTGACTTTAGGTCTCCTA 58.382 50.000 0.00 0.00 44.74 2.94
3269 5258 3.628487 CGGAGTGACTTTAGGTCTCCTAG 59.372 52.174 0.00 0.00 44.74 3.02
3270 5259 3.382227 GGAGTGACTTTAGGTCTCCTAGC 59.618 52.174 0.00 0.00 44.74 3.42
3271 5260 4.274978 GAGTGACTTTAGGTCTCCTAGCT 58.725 47.826 0.00 0.00 44.74 3.32
3272 5261 4.020543 AGTGACTTTAGGTCTCCTAGCTG 58.979 47.826 0.00 0.00 44.74 4.24
3273 5262 3.764972 GTGACTTTAGGTCTCCTAGCTGT 59.235 47.826 0.00 0.00 44.74 4.40
3274 5263 4.017808 TGACTTTAGGTCTCCTAGCTGTC 58.982 47.826 0.00 12.89 44.74 3.51
3275 5264 3.018149 ACTTTAGGTCTCCTAGCTGTCG 58.982 50.000 0.00 0.00 37.42 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.252789 TAAAGACCCATCCACCCCGA 60.253 55.000 0.00 0.00 0.00 5.14
130 131 6.584185 ACATAGTTTTAACCATGGTTGGAC 57.416 37.500 35.49 27.85 46.92 4.02
313 314 2.001872 CATCAACATCAGTAGCACGCA 58.998 47.619 0.00 0.00 0.00 5.24
411 412 0.595567 GTGTACACGCTGACCAACGA 60.596 55.000 10.84 0.00 0.00 3.85
444 445 1.264020 CCAATACGCATATGCAACGCT 59.736 47.619 26.52 4.62 42.21 5.07
476 477 1.301293 CTCTCCTTGGTCCAAGCCC 59.699 63.158 24.19 0.00 39.85 5.19
477 478 0.402121 AACTCTCCTTGGTCCAAGCC 59.598 55.000 24.19 0.00 39.85 4.35
481 482 1.352083 CTGGAACTCTCCTTGGTCCA 58.648 55.000 0.42 0.42 42.94 4.02
582 584 4.386049 CCGGACGAAGAGTATTGAATATGC 59.614 45.833 0.00 0.00 0.00 3.14
749 751 7.015487 TCTCTTTCCATTCAATTTGATGGTTGT 59.985 33.333 18.90 0.00 35.74 3.32
752 754 7.543359 TTCTCTTTCCATTCAATTTGATGGT 57.457 32.000 18.90 2.35 35.74 3.55
822 824 9.678941 CCTTTTTAGAGTTGATTAAAGGTTCAC 57.321 33.333 0.00 0.00 37.76 3.18
884 886 6.739112 ACAAAGAAAGGAGCAAATGAACTAC 58.261 36.000 0.00 0.00 0.00 2.73
930 934 8.604890 CCTTAACCTTTCGCTTCTTCTATTAAG 58.395 37.037 0.00 0.00 0.00 1.85
991 995 4.827692 TGTACGCAGACCATTAACTCATT 58.172 39.130 0.00 0.00 0.00 2.57
992 996 4.465632 TGTACGCAGACCATTAACTCAT 57.534 40.909 0.00 0.00 0.00 2.90
1245 1253 5.523438 TTAGGGAAAAATCAAGTTTGCGT 57.477 34.783 0.00 0.00 0.00 5.24
1328 1336 7.099120 GCCAAAATCTTCATCATTAACAAGGT 58.901 34.615 0.00 0.00 0.00 3.50
1470 1478 0.846693 GGGTATGGGGCACATCTTCT 59.153 55.000 4.97 0.00 41.03 2.85
1689 1701 3.194005 ACGTGTCCTTGATGAAACTGT 57.806 42.857 0.00 0.00 0.00 3.55
1759 1771 2.307686 GGGATCACCAAGGGTAAAGTCA 59.692 50.000 0.00 0.00 39.85 3.41
1764 1776 1.200519 CTCGGGATCACCAAGGGTAA 58.799 55.000 0.00 0.00 40.22 2.85
2108 2121 1.006688 GCCGGCGTTGTTCCATTTT 60.007 52.632 12.58 0.00 0.00 1.82
2137 2150 5.946942 TCTTCTGTTCAGATTGATAGGCT 57.053 39.130 3.28 0.00 0.00 4.58
2141 2154 7.118825 CAGCAACTTCTTCTGTTCAGATTGATA 59.881 37.037 13.69 0.00 0.00 2.15
2227 3710 5.147162 GCTTCGGTCTTTAAATCTGTTGTG 58.853 41.667 0.00 0.00 0.00 3.33
2273 3756 0.532573 CAAGGAGCTCGCCAGTTCTA 59.467 55.000 7.83 0.00 30.68 2.10
2297 3780 3.700130 AAACTAAATGAAGTCGACGCG 57.300 42.857 10.46 3.53 0.00 6.01
2320 3803 5.430007 GAATGATGGATTGAAATGGCCAAA 58.570 37.500 10.96 0.00 33.51 3.28
2455 3957 4.600012 AAATAAGGATGCTTCAACGTCG 57.400 40.909 1.37 0.00 0.00 5.12
2762 4656 1.660167 GAGTATAAACCGGGGCACAC 58.340 55.000 6.32 0.00 0.00 3.82
2855 4752 7.847096 AGTCTAAACTGGGACACAAAATTTTT 58.153 30.769 0.00 0.00 33.32 1.94
2856 4753 7.418337 AGTCTAAACTGGGACACAAAATTTT 57.582 32.000 0.00 0.00 33.32 1.82
2857 4754 6.238648 CGAGTCTAAACTGGGACACAAAATTT 60.239 38.462 0.00 0.00 35.28 1.82
2858 4755 5.238650 CGAGTCTAAACTGGGACACAAAATT 59.761 40.000 0.00 0.00 35.28 1.82
2859 4756 4.755123 CGAGTCTAAACTGGGACACAAAAT 59.245 41.667 0.00 0.00 35.28 1.82
2892 4881 2.953648 TGTCAGAGTTAGAACCACGACA 59.046 45.455 0.00 0.00 0.00 4.35
2893 4882 3.004524 ACTGTCAGAGTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
2894 4883 3.004419 CACTGTCAGAGTTAGAACCACGA 59.996 47.826 6.91 0.00 29.75 4.35
2895 4884 3.004419 TCACTGTCAGAGTTAGAACCACG 59.996 47.826 6.91 0.00 29.75 4.94
2896 4885 4.585955 TCACTGTCAGAGTTAGAACCAC 57.414 45.455 6.91 0.00 29.75 4.16
2897 4886 4.588951 ACATCACTGTCAGAGTTAGAACCA 59.411 41.667 6.91 0.00 29.75 3.67
2898 4887 5.140747 ACATCACTGTCAGAGTTAGAACC 57.859 43.478 6.91 0.00 29.75 3.62
2899 4888 6.326375 CCTACATCACTGTCAGAGTTAGAAC 58.674 44.000 6.91 0.00 36.79 3.01
2900 4889 5.419155 CCCTACATCACTGTCAGAGTTAGAA 59.581 44.000 6.91 0.00 36.79 2.10
2901 4890 4.950475 CCCTACATCACTGTCAGAGTTAGA 59.050 45.833 6.91 0.00 36.79 2.10
2902 4891 4.098654 CCCCTACATCACTGTCAGAGTTAG 59.901 50.000 6.91 2.37 36.79 2.34
2903 4892 4.023980 CCCCTACATCACTGTCAGAGTTA 58.976 47.826 6.91 0.00 36.79 2.24
2904 4893 2.834549 CCCCTACATCACTGTCAGAGTT 59.165 50.000 6.91 0.00 36.79 3.01
2905 4894 2.461695 CCCCTACATCACTGTCAGAGT 58.538 52.381 6.91 2.40 36.79 3.24
2906 4895 1.759445 CCCCCTACATCACTGTCAGAG 59.241 57.143 6.91 0.00 36.79 3.35
2907 4896 1.866015 CCCCCTACATCACTGTCAGA 58.134 55.000 6.91 0.00 36.79 3.27
2923 4912 1.057471 GCCTCTCCATACTTACCCCC 58.943 60.000 0.00 0.00 0.00 5.40
2924 4913 0.680061 CGCCTCTCCATACTTACCCC 59.320 60.000 0.00 0.00 0.00 4.95
2925 4914 1.614413 CTCGCCTCTCCATACTTACCC 59.386 57.143 0.00 0.00 0.00 3.69
2926 4915 1.614413 CCTCGCCTCTCCATACTTACC 59.386 57.143 0.00 0.00 0.00 2.85
2927 4916 2.293955 GACCTCGCCTCTCCATACTTAC 59.706 54.545 0.00 0.00 0.00 2.34
2928 4917 2.175069 AGACCTCGCCTCTCCATACTTA 59.825 50.000 0.00 0.00 0.00 2.24
2929 4918 1.063567 AGACCTCGCCTCTCCATACTT 60.064 52.381 0.00 0.00 0.00 2.24
2930 4919 0.553819 AGACCTCGCCTCTCCATACT 59.446 55.000 0.00 0.00 0.00 2.12
2931 4920 1.404843 AAGACCTCGCCTCTCCATAC 58.595 55.000 0.00 0.00 0.00 2.39
2932 4921 2.865079 CTAAGACCTCGCCTCTCCATA 58.135 52.381 0.00 0.00 0.00 2.74
2933 4922 1.698506 CTAAGACCTCGCCTCTCCAT 58.301 55.000 0.00 0.00 0.00 3.41
2934 4923 1.038130 GCTAAGACCTCGCCTCTCCA 61.038 60.000 0.00 0.00 0.00 3.86
2935 4924 0.753848 AGCTAAGACCTCGCCTCTCC 60.754 60.000 0.00 0.00 0.00 3.71
2936 4925 1.970092 TAGCTAAGACCTCGCCTCTC 58.030 55.000 0.00 0.00 0.00 3.20
2937 4926 2.235016 CATAGCTAAGACCTCGCCTCT 58.765 52.381 0.00 0.00 0.00 3.69
2938 4927 1.271102 CCATAGCTAAGACCTCGCCTC 59.729 57.143 0.00 0.00 0.00 4.70
2939 4928 1.133450 TCCATAGCTAAGACCTCGCCT 60.133 52.381 0.00 0.00 0.00 5.52
2940 4929 1.271102 CTCCATAGCTAAGACCTCGCC 59.729 57.143 0.00 0.00 0.00 5.54
2941 4930 2.227865 CTCTCCATAGCTAAGACCTCGC 59.772 54.545 0.00 0.00 0.00 5.03
2942 4931 2.817258 CCTCTCCATAGCTAAGACCTCG 59.183 54.545 0.00 0.00 0.00 4.63
2943 4932 3.839778 ACCTCTCCATAGCTAAGACCTC 58.160 50.000 0.00 0.00 0.00 3.85
2944 4933 3.964031 CAACCTCTCCATAGCTAAGACCT 59.036 47.826 0.00 0.00 0.00 3.85
2945 4934 3.707102 ACAACCTCTCCATAGCTAAGACC 59.293 47.826 0.00 0.00 0.00 3.85
2946 4935 6.461788 CCTTACAACCTCTCCATAGCTAAGAC 60.462 46.154 0.00 0.00 0.00 3.01
2947 4936 5.598830 CCTTACAACCTCTCCATAGCTAAGA 59.401 44.000 0.00 0.00 0.00 2.10
2948 4937 5.598830 TCCTTACAACCTCTCCATAGCTAAG 59.401 44.000 0.00 0.00 0.00 2.18
2949 4938 5.363005 GTCCTTACAACCTCTCCATAGCTAA 59.637 44.000 0.00 0.00 0.00 3.09
2950 4939 4.894114 GTCCTTACAACCTCTCCATAGCTA 59.106 45.833 0.00 0.00 0.00 3.32
2951 4940 3.707102 GTCCTTACAACCTCTCCATAGCT 59.293 47.826 0.00 0.00 0.00 3.32
2952 4941 3.491104 CGTCCTTACAACCTCTCCATAGC 60.491 52.174 0.00 0.00 0.00 2.97
2953 4942 3.491104 GCGTCCTTACAACCTCTCCATAG 60.491 52.174 0.00 0.00 0.00 2.23
2954 4943 2.429610 GCGTCCTTACAACCTCTCCATA 59.570 50.000 0.00 0.00 0.00 2.74
2955 4944 1.207329 GCGTCCTTACAACCTCTCCAT 59.793 52.381 0.00 0.00 0.00 3.41
2956 4945 0.606604 GCGTCCTTACAACCTCTCCA 59.393 55.000 0.00 0.00 0.00 3.86
2957 4946 0.606604 TGCGTCCTTACAACCTCTCC 59.393 55.000 0.00 0.00 0.00 3.71
2958 4947 2.338500 CTTGCGTCCTTACAACCTCTC 58.662 52.381 0.00 0.00 0.00 3.20
2959 4948 1.002087 CCTTGCGTCCTTACAACCTCT 59.998 52.381 0.00 0.00 0.00 3.69
2960 4949 1.270678 ACCTTGCGTCCTTACAACCTC 60.271 52.381 0.00 0.00 0.00 3.85
2961 4950 0.763035 ACCTTGCGTCCTTACAACCT 59.237 50.000 0.00 0.00 0.00 3.50
2962 4951 1.601166 AACCTTGCGTCCTTACAACC 58.399 50.000 0.00 0.00 0.00 3.77
2963 4952 3.363280 CGTAAACCTTGCGTCCTTACAAC 60.363 47.826 0.00 0.00 33.98 3.32
2964 4953 2.801679 CGTAAACCTTGCGTCCTTACAA 59.198 45.455 0.00 0.00 33.98 2.41
2965 4954 2.035704 TCGTAAACCTTGCGTCCTTACA 59.964 45.455 0.00 0.00 39.81 2.41
2966 4955 2.665052 CTCGTAAACCTTGCGTCCTTAC 59.335 50.000 0.00 0.00 39.81 2.34
2967 4956 2.297033 ACTCGTAAACCTTGCGTCCTTA 59.703 45.455 0.00 0.00 39.81 2.69
2968 4957 1.069668 ACTCGTAAACCTTGCGTCCTT 59.930 47.619 0.00 0.00 39.81 3.36
2969 4958 0.677842 ACTCGTAAACCTTGCGTCCT 59.322 50.000 0.00 0.00 39.81 3.85
2970 4959 1.458445 GAACTCGTAAACCTTGCGTCC 59.542 52.381 0.00 0.00 39.81 4.79
2971 4960 2.129607 TGAACTCGTAAACCTTGCGTC 58.870 47.619 0.00 0.00 39.81 5.19
2972 4961 2.132762 CTGAACTCGTAAACCTTGCGT 58.867 47.619 0.00 0.00 39.81 5.24
2973 4962 1.459592 CCTGAACTCGTAAACCTTGCG 59.540 52.381 0.00 0.00 40.22 4.85
2974 4963 1.197036 GCCTGAACTCGTAAACCTTGC 59.803 52.381 0.00 0.00 0.00 4.01
2975 4964 1.804748 GGCCTGAACTCGTAAACCTTG 59.195 52.381 0.00 0.00 0.00 3.61
2976 4965 1.271217 GGGCCTGAACTCGTAAACCTT 60.271 52.381 0.84 0.00 0.00 3.50
2977 4966 0.323957 GGGCCTGAACTCGTAAACCT 59.676 55.000 0.84 0.00 0.00 3.50
2978 4967 0.323957 AGGGCCTGAACTCGTAAACC 59.676 55.000 4.50 0.00 0.00 3.27
2979 4968 2.074576 GAAGGGCCTGAACTCGTAAAC 58.925 52.381 6.92 0.00 0.00 2.01
2980 4969 1.975680 AGAAGGGCCTGAACTCGTAAA 59.024 47.619 6.92 0.00 0.00 2.01
2981 4970 1.549170 GAGAAGGGCCTGAACTCGTAA 59.451 52.381 6.92 0.00 0.00 3.18
2982 4971 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
2983 4972 1.878656 CGAGAAGGGCCTGAACTCGT 61.879 60.000 31.25 9.99 43.19 4.18
2984 4973 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
2985 4974 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
2986 4975 0.836400 TTCCGAGAAGGGCCTGAACT 60.836 55.000 6.92 7.41 41.52 3.01
2987 4976 0.391793 CTTCCGAGAAGGGCCTGAAC 60.392 60.000 6.92 1.62 41.52 3.18
2988 4977 0.544357 TCTTCCGAGAAGGGCCTGAA 60.544 55.000 6.92 4.77 41.52 3.02
2989 4978 0.544357 TTCTTCCGAGAAGGGCCTGA 60.544 55.000 6.92 0.00 41.52 3.86
2990 4979 1.983224 TTCTTCCGAGAAGGGCCTG 59.017 57.895 6.92 0.00 41.52 4.85
2991 4980 4.561155 TTCTTCCGAGAAGGGCCT 57.439 55.556 0.00 0.00 41.52 5.19
2997 4986 3.326880 AGGGCTTTTACTTCTTCCGAGAA 59.673 43.478 0.00 0.00 39.54 2.87
2998 4987 2.904434 AGGGCTTTTACTTCTTCCGAGA 59.096 45.455 0.00 0.00 0.00 4.04
2999 4988 3.336138 AGGGCTTTTACTTCTTCCGAG 57.664 47.619 0.00 0.00 0.00 4.63
3000 4989 3.367703 CGTAGGGCTTTTACTTCTTCCGA 60.368 47.826 0.00 0.00 0.00 4.55
3001 4990 2.928116 CGTAGGGCTTTTACTTCTTCCG 59.072 50.000 0.00 0.00 0.00 4.30
3002 4991 3.931468 GACGTAGGGCTTTTACTTCTTCC 59.069 47.826 0.00 0.00 0.00 3.46
3003 4992 4.818642 AGACGTAGGGCTTTTACTTCTTC 58.181 43.478 0.00 0.00 28.63 2.87
3004 4993 4.617762 CGAGACGTAGGGCTTTTACTTCTT 60.618 45.833 0.00 0.00 31.98 2.52
3005 4994 3.119566 CGAGACGTAGGGCTTTTACTTCT 60.120 47.826 0.00 4.15 33.78 2.85
3006 4995 3.177487 CGAGACGTAGGGCTTTTACTTC 58.823 50.000 0.00 0.00 0.00 3.01
3007 4996 2.094338 CCGAGACGTAGGGCTTTTACTT 60.094 50.000 0.00 0.00 0.00 2.24
3008 4997 1.475682 CCGAGACGTAGGGCTTTTACT 59.524 52.381 0.00 0.00 0.00 2.24
3009 4998 1.474077 TCCGAGACGTAGGGCTTTTAC 59.526 52.381 0.00 0.00 0.00 2.01
3010 4999 1.747355 CTCCGAGACGTAGGGCTTTTA 59.253 52.381 0.00 0.00 0.00 1.52
3011 5000 0.531200 CTCCGAGACGTAGGGCTTTT 59.469 55.000 0.00 0.00 0.00 2.27
3012 5001 1.946475 GCTCCGAGACGTAGGGCTTT 61.946 60.000 0.00 0.00 0.00 3.51
3013 5002 2.416432 GCTCCGAGACGTAGGGCTT 61.416 63.158 0.00 0.00 0.00 4.35
3014 5003 2.829458 GCTCCGAGACGTAGGGCT 60.829 66.667 0.00 0.00 0.00 5.19
3015 5004 3.902086 GGCTCCGAGACGTAGGGC 61.902 72.222 0.00 0.00 0.00 5.19
3016 5005 3.217743 GGGCTCCGAGACGTAGGG 61.218 72.222 0.00 0.00 0.00 3.53
3034 5023 1.389609 TAATCCAGTCGACCGCCTCC 61.390 60.000 13.01 0.00 0.00 4.30
3035 5024 0.674534 ATAATCCAGTCGACCGCCTC 59.325 55.000 13.01 0.00 0.00 4.70
3036 5025 0.389391 CATAATCCAGTCGACCGCCT 59.611 55.000 13.01 0.00 0.00 5.52
3037 5026 0.104304 ACATAATCCAGTCGACCGCC 59.896 55.000 13.01 0.00 0.00 6.13
3038 5027 1.209128 CACATAATCCAGTCGACCGC 58.791 55.000 13.01 0.00 0.00 5.68
3039 5028 2.193447 CACACATAATCCAGTCGACCG 58.807 52.381 13.01 0.70 0.00 4.79
3040 5029 3.247006 ACACACATAATCCAGTCGACC 57.753 47.619 13.01 0.00 0.00 4.79
3041 5030 5.588240 TCATACACACATAATCCAGTCGAC 58.412 41.667 7.70 7.70 0.00 4.20
3042 5031 5.359860 ACTCATACACACATAATCCAGTCGA 59.640 40.000 0.00 0.00 0.00 4.20
3043 5032 5.592054 ACTCATACACACATAATCCAGTCG 58.408 41.667 0.00 0.00 0.00 4.18
3044 5033 7.979537 TGTAACTCATACACACATAATCCAGTC 59.020 37.037 0.00 0.00 39.60 3.51
3045 5034 7.847096 TGTAACTCATACACACATAATCCAGT 58.153 34.615 0.00 0.00 39.60 4.00
3046 5035 8.197439 TCTGTAACTCATACACACATAATCCAG 58.803 37.037 0.00 0.00 39.60 3.86
3047 5036 8.073467 TCTGTAACTCATACACACATAATCCA 57.927 34.615 0.00 0.00 39.60 3.41
3048 5037 7.653713 CCTCTGTAACTCATACACACATAATCC 59.346 40.741 0.00 0.00 39.60 3.01
3049 5038 8.198109 ACCTCTGTAACTCATACACACATAATC 58.802 37.037 0.00 0.00 39.60 1.75
3050 5039 8.079211 ACCTCTGTAACTCATACACACATAAT 57.921 34.615 0.00 0.00 39.60 1.28
3051 5040 7.363530 GGACCTCTGTAACTCATACACACATAA 60.364 40.741 0.00 0.00 39.60 1.90
3052 5041 6.096423 GGACCTCTGTAACTCATACACACATA 59.904 42.308 0.00 0.00 39.60 2.29
3053 5042 5.105310 GGACCTCTGTAACTCATACACACAT 60.105 44.000 0.00 0.00 39.60 3.21
3054 5043 4.219944 GGACCTCTGTAACTCATACACACA 59.780 45.833 0.00 0.00 39.60 3.72
3055 5044 4.674623 CGGACCTCTGTAACTCATACACAC 60.675 50.000 0.00 0.00 39.60 3.82
3056 5045 3.442625 CGGACCTCTGTAACTCATACACA 59.557 47.826 0.00 0.00 39.60 3.72
3057 5046 3.693085 TCGGACCTCTGTAACTCATACAC 59.307 47.826 0.00 0.00 39.60 2.90
3058 5047 3.959293 TCGGACCTCTGTAACTCATACA 58.041 45.455 0.00 0.00 42.22 2.29
3059 5048 4.439837 GGTTCGGACCTCTGTAACTCATAC 60.440 50.000 5.31 0.00 42.99 2.39
3060 5049 3.698040 GGTTCGGACCTCTGTAACTCATA 59.302 47.826 5.31 0.00 42.99 2.15
3061 5050 2.496470 GGTTCGGACCTCTGTAACTCAT 59.504 50.000 5.31 0.00 42.99 2.90
3062 5051 1.891150 GGTTCGGACCTCTGTAACTCA 59.109 52.381 5.31 0.00 42.99 3.41
3063 5052 2.651135 GGTTCGGACCTCTGTAACTC 57.349 55.000 5.31 0.00 42.99 3.01
3073 5062 2.823628 CGAGACAAAGGTTCGGACC 58.176 57.895 4.03 4.03 46.92 4.46
3077 5066 0.601558 TCCTCCGAGACAAAGGTTCG 59.398 55.000 0.00 0.00 0.00 3.95
3078 5067 1.066787 CCTCCTCCGAGACAAAGGTTC 60.067 57.143 0.00 0.00 38.52 3.62
3079 5068 0.977395 CCTCCTCCGAGACAAAGGTT 59.023 55.000 0.00 0.00 38.52 3.50
3080 5069 0.905337 CCCTCCTCCGAGACAAAGGT 60.905 60.000 0.00 0.00 38.52 3.50
3081 5070 1.617947 CCCCTCCTCCGAGACAAAGG 61.618 65.000 0.00 0.00 38.52 3.11
3082 5071 1.617947 CCCCCTCCTCCGAGACAAAG 61.618 65.000 0.00 0.00 38.52 2.77
3083 5072 1.612442 CCCCCTCCTCCGAGACAAA 60.612 63.158 0.00 0.00 38.52 2.83
3084 5073 2.038975 CCCCCTCCTCCGAGACAA 59.961 66.667 0.00 0.00 38.52 3.18
3098 5087 2.027100 GCACTCTATATAAGCCACCCCC 60.027 54.545 0.00 0.00 0.00 5.40
3099 5088 2.353803 CGCACTCTATATAAGCCACCCC 60.354 54.545 0.00 0.00 0.00 4.95
3100 5089 2.931320 GCGCACTCTATATAAGCCACCC 60.931 54.545 0.30 0.00 0.00 4.61
3101 5090 2.338500 GCGCACTCTATATAAGCCACC 58.662 52.381 0.30 0.00 0.00 4.61
3102 5091 2.288825 TGGCGCACTCTATATAAGCCAC 60.289 50.000 10.83 0.00 46.73 5.01
3103 5092 2.743636 GGCGCACTCTATATAAGCCA 57.256 50.000 10.83 0.00 42.37 4.75
3104 5093 2.611518 CTGGCGCACTCTATATAAGCC 58.388 52.381 10.83 0.00 43.05 4.35
3105 5094 2.231478 TCCTGGCGCACTCTATATAAGC 59.769 50.000 10.83 0.00 0.00 3.09
3106 5095 3.367498 GGTCCTGGCGCACTCTATATAAG 60.367 52.174 10.83 0.00 0.00 1.73
3107 5096 2.561419 GGTCCTGGCGCACTCTATATAA 59.439 50.000 10.83 0.00 0.00 0.98
3108 5097 2.168496 GGTCCTGGCGCACTCTATATA 58.832 52.381 10.83 0.00 0.00 0.86
3109 5098 0.969894 GGTCCTGGCGCACTCTATAT 59.030 55.000 10.83 0.00 0.00 0.86
3110 5099 1.113517 GGGTCCTGGCGCACTCTATA 61.114 60.000 10.83 0.00 0.00 1.31
3111 5100 2.435693 GGGTCCTGGCGCACTCTAT 61.436 63.158 10.83 0.00 0.00 1.98
3112 5101 3.075005 GGGTCCTGGCGCACTCTA 61.075 66.667 10.83 0.00 0.00 2.43
3128 5117 4.122149 TAATGTGGGCTGGCCGGG 62.122 66.667 15.02 1.86 36.85 5.73
3129 5118 2.828549 GTAATGTGGGCTGGCCGG 60.829 66.667 16.08 7.41 36.85 6.13
3130 5119 3.202001 CGTAATGTGGGCTGGCCG 61.202 66.667 16.08 0.00 36.85 6.13
3131 5120 1.376609 CTTCGTAATGTGGGCTGGCC 61.377 60.000 14.23 14.23 0.00 5.36
3132 5121 1.376609 CCTTCGTAATGTGGGCTGGC 61.377 60.000 0.00 0.00 0.00 4.85
3133 5122 0.748005 CCCTTCGTAATGTGGGCTGG 60.748 60.000 0.00 0.00 32.49 4.85
3134 5123 0.035439 ACCCTTCGTAATGTGGGCTG 60.035 55.000 0.00 0.00 43.25 4.85
3135 5124 0.696501 AACCCTTCGTAATGTGGGCT 59.303 50.000 0.00 0.00 43.25 5.19
3136 5125 1.092348 GAACCCTTCGTAATGTGGGC 58.908 55.000 0.00 0.00 43.25 5.36
3137 5126 2.483014 TGAACCCTTCGTAATGTGGG 57.517 50.000 0.00 0.00 44.89 4.61
3138 5127 3.756434 ACATTGAACCCTTCGTAATGTGG 59.244 43.478 0.00 0.00 39.65 4.17
3139 5128 5.410132 TGTACATTGAACCCTTCGTAATGTG 59.590 40.000 10.22 0.00 40.83 3.21
3140 5129 5.553123 TGTACATTGAACCCTTCGTAATGT 58.447 37.500 0.00 0.00 42.59 2.71
3141 5130 6.677781 ATGTACATTGAACCCTTCGTAATG 57.322 37.500 1.41 0.00 35.47 1.90
3142 5131 8.795842 TTAATGTACATTGAACCCTTCGTAAT 57.204 30.769 27.62 1.45 32.50 1.89
3143 5132 7.334921 CCTTAATGTACATTGAACCCTTCGTAA 59.665 37.037 27.62 10.65 32.50 3.18
3144 5133 6.819649 CCTTAATGTACATTGAACCCTTCGTA 59.180 38.462 27.62 3.52 32.50 3.43
3145 5134 5.646360 CCTTAATGTACATTGAACCCTTCGT 59.354 40.000 27.62 2.70 32.50 3.85
3146 5135 5.646360 ACCTTAATGTACATTGAACCCTTCG 59.354 40.000 27.62 8.53 32.50 3.79
3147 5136 7.282450 CCTACCTTAATGTACATTGAACCCTTC 59.718 40.741 27.62 0.00 32.50 3.46
3148 5137 7.116736 CCTACCTTAATGTACATTGAACCCTT 58.883 38.462 27.62 5.42 32.50 3.95
3149 5138 6.353602 CCCTACCTTAATGTACATTGAACCCT 60.354 42.308 27.62 5.35 32.50 4.34
3150 5139 5.826208 CCCTACCTTAATGTACATTGAACCC 59.174 44.000 27.62 0.00 32.50 4.11
3151 5140 5.298527 GCCCTACCTTAATGTACATTGAACC 59.701 44.000 27.62 5.86 32.50 3.62
3152 5141 5.883673 TGCCCTACCTTAATGTACATTGAAC 59.116 40.000 27.62 9.55 32.50 3.18
3153 5142 6.068461 TGCCCTACCTTAATGTACATTGAA 57.932 37.500 27.62 16.94 32.50 2.69
3154 5143 5.702065 TGCCCTACCTTAATGTACATTGA 57.298 39.130 27.62 19.92 32.50 2.57
3155 5144 6.959639 AATGCCCTACCTTAATGTACATTG 57.040 37.500 27.62 15.39 32.50 2.82
3156 5145 7.719633 CAGTAATGCCCTACCTTAATGTACATT 59.280 37.037 23.80 23.80 34.93 2.71
3157 5146 7.071950 TCAGTAATGCCCTACCTTAATGTACAT 59.928 37.037 1.41 1.41 0.00 2.29
3158 5147 6.384595 TCAGTAATGCCCTACCTTAATGTACA 59.615 38.462 0.00 0.00 0.00 2.90
3159 5148 6.823497 TCAGTAATGCCCTACCTTAATGTAC 58.177 40.000 0.00 0.00 0.00 2.90
3160 5149 7.626999 ATCAGTAATGCCCTACCTTAATGTA 57.373 36.000 0.00 0.00 0.00 2.29
3161 5150 5.968676 TCAGTAATGCCCTACCTTAATGT 57.031 39.130 0.00 0.00 0.00 2.71
3162 5151 8.950210 CATTATCAGTAATGCCCTACCTTAATG 58.050 37.037 0.00 0.00 40.36 1.90
3177 5166 9.261180 GCACTTCATTACTAGCATTATCAGTAA 57.739 33.333 0.00 0.00 38.68 2.24
3178 5167 8.642432 AGCACTTCATTACTAGCATTATCAGTA 58.358 33.333 0.00 0.00 0.00 2.74
3179 5168 7.504403 AGCACTTCATTACTAGCATTATCAGT 58.496 34.615 0.00 0.00 0.00 3.41
3180 5169 7.959689 AGCACTTCATTACTAGCATTATCAG 57.040 36.000 0.00 0.00 0.00 2.90
3181 5170 9.428097 CATAGCACTTCATTACTAGCATTATCA 57.572 33.333 0.00 0.00 0.00 2.15
3182 5171 9.645059 TCATAGCACTTCATTACTAGCATTATC 57.355 33.333 0.00 0.00 0.00 1.75
3184 5173 9.428097 CATCATAGCACTTCATTACTAGCATTA 57.572 33.333 0.00 0.00 0.00 1.90
3185 5174 8.152898 TCATCATAGCACTTCATTACTAGCATT 58.847 33.333 0.00 0.00 0.00 3.56
3186 5175 7.601886 GTCATCATAGCACTTCATTACTAGCAT 59.398 37.037 0.00 0.00 0.00 3.79
3187 5176 6.925718 GTCATCATAGCACTTCATTACTAGCA 59.074 38.462 0.00 0.00 0.00 3.49
3188 5177 6.367422 GGTCATCATAGCACTTCATTACTAGC 59.633 42.308 0.00 0.00 0.00 3.42
3189 5178 7.436933 TGGTCATCATAGCACTTCATTACTAG 58.563 38.462 0.00 0.00 0.00 2.57
3190 5179 7.360113 TGGTCATCATAGCACTTCATTACTA 57.640 36.000 0.00 0.00 0.00 1.82
3191 5180 6.239217 TGGTCATCATAGCACTTCATTACT 57.761 37.500 0.00 0.00 0.00 2.24
3192 5181 8.607441 TTATGGTCATCATAGCACTTCATTAC 57.393 34.615 0.00 0.00 39.29 1.89
3193 5182 9.625747 TTTTATGGTCATCATAGCACTTCATTA 57.374 29.630 0.00 0.00 39.29 1.90
3194 5183 8.523915 TTTTATGGTCATCATAGCACTTCATT 57.476 30.769 0.00 0.00 39.29 2.57
3195 5184 7.255381 GCTTTTATGGTCATCATAGCACTTCAT 60.255 37.037 0.00 0.00 39.29 2.57
3196 5185 6.038603 GCTTTTATGGTCATCATAGCACTTCA 59.961 38.462 0.00 0.00 39.29 3.02
3197 5186 6.261826 AGCTTTTATGGTCATCATAGCACTTC 59.738 38.462 9.16 0.00 39.29 3.01
3198 5187 6.125029 AGCTTTTATGGTCATCATAGCACTT 58.875 36.000 9.16 0.00 39.29 3.16
3199 5188 5.688807 AGCTTTTATGGTCATCATAGCACT 58.311 37.500 9.16 0.00 39.29 4.40
3200 5189 6.708054 AGTAGCTTTTATGGTCATCATAGCAC 59.292 38.462 0.00 6.36 39.29 4.40
3201 5190 6.830912 AGTAGCTTTTATGGTCATCATAGCA 58.169 36.000 0.00 0.00 39.29 3.49
3202 5191 7.736447 AAGTAGCTTTTATGGTCATCATAGC 57.264 36.000 0.00 0.00 39.29 2.97
3205 5194 9.851686 TCATTAAGTAGCTTTTATGGTCATCAT 57.148 29.630 0.00 0.00 39.78 2.45
3206 5195 9.109393 GTCATTAAGTAGCTTTTATGGTCATCA 57.891 33.333 0.00 0.00 0.00 3.07
3207 5196 8.560374 GGTCATTAAGTAGCTTTTATGGTCATC 58.440 37.037 0.00 0.00 0.00 2.92
3208 5197 7.226720 CGGTCATTAAGTAGCTTTTATGGTCAT 59.773 37.037 0.00 0.00 0.00 3.06
3209 5198 6.537301 CGGTCATTAAGTAGCTTTTATGGTCA 59.463 38.462 0.00 0.00 0.00 4.02
3210 5199 6.759827 TCGGTCATTAAGTAGCTTTTATGGTC 59.240 38.462 0.00 0.00 0.00 4.02
3211 5200 6.537660 GTCGGTCATTAAGTAGCTTTTATGGT 59.462 38.462 0.00 0.00 0.00 3.55
3212 5201 6.018180 GGTCGGTCATTAAGTAGCTTTTATGG 60.018 42.308 0.00 0.00 0.00 2.74
3213 5202 6.292168 CGGTCGGTCATTAAGTAGCTTTTATG 60.292 42.308 0.00 0.00 0.00 1.90
3214 5203 5.751990 CGGTCGGTCATTAAGTAGCTTTTAT 59.248 40.000 0.00 0.00 0.00 1.40
3215 5204 5.104374 CGGTCGGTCATTAAGTAGCTTTTA 58.896 41.667 0.00 0.00 0.00 1.52
3216 5205 3.930848 CGGTCGGTCATTAAGTAGCTTTT 59.069 43.478 0.00 0.00 0.00 2.27
3217 5206 3.056322 ACGGTCGGTCATTAAGTAGCTTT 60.056 43.478 0.00 0.00 0.00 3.51
3218 5207 2.494870 ACGGTCGGTCATTAAGTAGCTT 59.505 45.455 0.00 0.00 0.00 3.74
3219 5208 2.097825 ACGGTCGGTCATTAAGTAGCT 58.902 47.619 0.00 0.00 0.00 3.32
3220 5209 2.573941 ACGGTCGGTCATTAAGTAGC 57.426 50.000 0.00 0.00 0.00 3.58
3221 5210 6.020121 CACATTAACGGTCGGTCATTAAGTAG 60.020 42.308 0.00 0.00 0.00 2.57
3222 5211 5.806502 CACATTAACGGTCGGTCATTAAGTA 59.193 40.000 0.00 0.00 0.00 2.24
3223 5212 4.628333 CACATTAACGGTCGGTCATTAAGT 59.372 41.667 0.00 0.00 0.00 2.24
3224 5213 4.493545 GCACATTAACGGTCGGTCATTAAG 60.494 45.833 0.00 0.00 0.00 1.85
3225 5214 3.371591 GCACATTAACGGTCGGTCATTAA 59.628 43.478 0.00 0.00 0.00 1.40
3226 5215 2.931325 GCACATTAACGGTCGGTCATTA 59.069 45.455 0.00 0.00 0.00 1.90
3227 5216 1.735571 GCACATTAACGGTCGGTCATT 59.264 47.619 0.00 0.00 0.00 2.57
3228 5217 1.365699 GCACATTAACGGTCGGTCAT 58.634 50.000 0.00 0.00 0.00 3.06
3229 5218 1.009903 CGCACATTAACGGTCGGTCA 61.010 55.000 0.00 0.00 0.00 4.02
3230 5219 1.689352 CCGCACATTAACGGTCGGTC 61.689 60.000 0.00 0.00 44.46 4.79
3231 5220 1.738830 CCGCACATTAACGGTCGGT 60.739 57.895 0.00 0.00 44.46 4.69
3232 5221 3.086309 CCGCACATTAACGGTCGG 58.914 61.111 0.00 0.00 44.46 4.79
3237 5226 1.710013 AGTCACTCCGCACATTAACG 58.290 50.000 0.00 0.00 0.00 3.18
3238 5227 4.092968 CCTAAAGTCACTCCGCACATTAAC 59.907 45.833 0.00 0.00 0.00 2.01
3239 5228 4.250464 CCTAAAGTCACTCCGCACATTAA 58.750 43.478 0.00 0.00 0.00 1.40
3240 5229 3.259876 ACCTAAAGTCACTCCGCACATTA 59.740 43.478 0.00 0.00 0.00 1.90
3241 5230 2.038557 ACCTAAAGTCACTCCGCACATT 59.961 45.455 0.00 0.00 0.00 2.71
3242 5231 1.623811 ACCTAAAGTCACTCCGCACAT 59.376 47.619 0.00 0.00 0.00 3.21
3243 5232 1.000506 GACCTAAAGTCACTCCGCACA 59.999 52.381 0.00 0.00 45.55 4.57
3244 5233 1.711206 GACCTAAAGTCACTCCGCAC 58.289 55.000 0.00 0.00 45.55 5.34
3253 5242 3.065648 CGACAGCTAGGAGACCTAAAGTC 59.934 52.174 0.00 0.00 46.71 3.01
3254 5243 3.018149 CGACAGCTAGGAGACCTAAAGT 58.982 50.000 0.00 0.00 35.49 2.66
3255 5244 3.701532 CGACAGCTAGGAGACCTAAAG 57.298 52.381 0.00 0.00 35.49 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.