Multiple sequence alignment - TraesCS7A01G100300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G100300 chr7A 100.000 3290 0 0 1 3290 61787530 61790819 0.000000e+00 6076.0
1 TraesCS7A01G100300 chr7A 91.045 67 6 0 422 488 409227171 409227105 1.260000e-14 91.6
2 TraesCS7A01G100300 chr7D 93.350 2722 105 22 587 3290 56982641 56985304 0.000000e+00 3954.0
3 TraesCS7A01G100300 chr4A 87.741 1868 134 42 627 2456 674359314 674357504 0.000000e+00 2093.0
4 TraesCS7A01G100300 chr3D 86.421 869 84 9 1481 2340 545221986 545222829 0.000000e+00 920.0
5 TraesCS7A01G100300 chr3D 93.243 444 29 1 1035 1478 545221585 545222027 0.000000e+00 652.0
6 TraesCS7A01G100300 chr3D 88.732 71 7 1 419 488 245476028 245475958 5.850000e-13 86.1
7 TraesCS7A01G100300 chr3D 80.882 68 12 1 215 281 604883965 604883898 6.000000e-03 52.8
8 TraesCS7A01G100300 chr1D 84.454 238 34 3 177 412 78966805 78967041 7.100000e-57 231.0
9 TraesCS7A01G100300 chr6D 79.736 227 39 5 187 407 461385233 461385458 1.220000e-34 158.0
10 TraesCS7A01G100300 chr5A 80.976 205 30 8 186 385 110669315 110669515 1.580000e-33 154.0
11 TraesCS7A01G100300 chr5A 90.000 70 7 0 419 488 700343685 700343616 1.260000e-14 91.6
12 TraesCS7A01G100300 chr5A 89.706 68 7 0 421 488 208094556 208094489 1.630000e-13 87.9
13 TraesCS7A01G100300 chr2B 80.928 194 36 1 220 412 444613023 444613216 5.690000e-33 152.0
14 TraesCS7A01G100300 chr2B 89.706 68 7 0 421 488 433343551 433343484 1.630000e-13 87.9
15 TraesCS7A01G100300 chr2B 89.706 68 6 1 419 485 319932674 319932741 5.850000e-13 86.1
16 TraesCS7A01G100300 chr5D 80.392 204 34 6 186 385 107784582 107784783 2.050000e-32 150.0
17 TraesCS7A01G100300 chr5B 92.208 77 6 0 237 313 117903762 117903838 3.470000e-20 110.0
18 TraesCS7A01G100300 chr4D 89.706 68 7 0 421 488 250270187 250270120 1.630000e-13 87.9
19 TraesCS7A01G100300 chr2A 90.769 65 6 0 421 485 239765252 239765316 1.630000e-13 87.9
20 TraesCS7A01G100300 chr3A 89.552 67 7 0 422 488 181940322 181940388 5.850000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G100300 chr7A 61787530 61790819 3289 False 6076 6076 100.000 1 3290 1 chr7A.!!$F1 3289
1 TraesCS7A01G100300 chr7D 56982641 56985304 2663 False 3954 3954 93.350 587 3290 1 chr7D.!!$F1 2703
2 TraesCS7A01G100300 chr4A 674357504 674359314 1810 True 2093 2093 87.741 627 2456 1 chr4A.!!$R1 1829
3 TraesCS7A01G100300 chr3D 545221585 545222829 1244 False 786 920 89.832 1035 2340 2 chr3D.!!$F1 1305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.249238 CATGCGTAGAGGAGTGGAGC 60.249 60.0 0.0 0.0 0.00 4.70 F
194 195 0.324943 CCATTCTGTTGGACTCCGGT 59.675 55.0 0.0 0.0 39.25 5.28 F
1785 1799 0.329596 ACTTCCTGCCCTCCAATCAC 59.670 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1565 0.672401 CGTGCCCGACCAAGTACAAT 60.672 55.000 0.0 0.0 35.63 2.71 R
2046 2070 0.791422 CGAGAACAGAGTCGAGACGT 59.209 55.000 0.0 0.0 38.50 4.34 R
2886 2938 1.147153 GTCTGGGCTATGCACCTCC 59.853 63.158 0.0 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.758651 CAAAAACTAAGGGCACTTACTAATTTT 57.241 29.630 3.71 6.84 38.14 1.82
34 35 9.628500 AAGGGCACTTACTAATTTTAGATTAGG 57.372 33.333 0.00 0.00 36.26 2.69
35 36 8.779031 AGGGCACTTACTAATTTTAGATTAGGT 58.221 33.333 7.31 0.00 36.26 3.08
36 37 8.837389 GGGCACTTACTAATTTTAGATTAGGTG 58.163 37.037 7.31 6.70 36.26 4.00
37 38 8.837389 GGCACTTACTAATTTTAGATTAGGTGG 58.163 37.037 7.31 0.57 36.26 4.61
38 39 9.609346 GCACTTACTAATTTTAGATTAGGTGGA 57.391 33.333 7.31 0.00 36.26 4.02
44 45 7.873505 ACTAATTTTAGATTAGGTGGATCGAGC 59.126 37.037 7.31 0.00 36.26 5.03
45 46 5.607939 TTTTAGATTAGGTGGATCGAGCA 57.392 39.130 9.66 0.00 0.00 4.26
46 47 4.855715 TTAGATTAGGTGGATCGAGCAG 57.144 45.455 9.66 0.00 0.00 4.24
47 48 2.950781 AGATTAGGTGGATCGAGCAGA 58.049 47.619 9.66 0.00 0.00 4.26
48 49 3.505386 AGATTAGGTGGATCGAGCAGAT 58.495 45.455 9.66 2.63 43.51 2.90
49 50 4.667573 AGATTAGGTGGATCGAGCAGATA 58.332 43.478 9.66 0.00 40.26 1.98
50 51 5.268387 AGATTAGGTGGATCGAGCAGATAT 58.732 41.667 9.66 0.00 40.26 1.63
51 52 4.790765 TTAGGTGGATCGAGCAGATATG 57.209 45.455 9.66 0.00 40.26 1.78
52 53 1.274728 AGGTGGATCGAGCAGATATGC 59.725 52.381 3.54 3.54 40.26 3.14
71 72 9.878667 AGATATGCTCATCTGAAATAAGATCAG 57.121 33.333 0.00 0.00 44.53 2.90
72 73 9.656040 GATATGCTCATCTGAAATAAGATCAGT 57.344 33.333 0.00 0.00 43.77 3.41
73 74 7.966246 ATGCTCATCTGAAATAAGATCAGTC 57.034 36.000 0.00 0.00 43.77 3.51
74 75 6.881570 TGCTCATCTGAAATAAGATCAGTCA 58.118 36.000 0.00 0.00 43.77 3.41
75 76 7.506971 TGCTCATCTGAAATAAGATCAGTCAT 58.493 34.615 0.00 0.00 43.77 3.06
76 77 7.656542 TGCTCATCTGAAATAAGATCAGTCATC 59.343 37.037 0.00 0.00 43.77 2.92
77 78 7.874016 GCTCATCTGAAATAAGATCAGTCATCT 59.126 37.037 0.00 0.00 44.56 2.90
90 91 8.945195 AGATCAGTCATCTTCTCTCATATCTT 57.055 34.615 0.00 0.00 38.95 2.40
91 92 9.370930 AGATCAGTCATCTTCTCTCATATCTTT 57.629 33.333 0.00 0.00 38.95 2.52
92 93 9.414295 GATCAGTCATCTTCTCTCATATCTTTG 57.586 37.037 0.00 0.00 0.00 2.77
93 94 7.724287 TCAGTCATCTTCTCTCATATCTTTGG 58.276 38.462 0.00 0.00 0.00 3.28
94 95 6.930164 CAGTCATCTTCTCTCATATCTTTGGG 59.070 42.308 0.00 0.00 0.00 4.12
95 96 6.843333 AGTCATCTTCTCTCATATCTTTGGGA 59.157 38.462 0.00 0.00 0.00 4.37
96 97 6.928492 GTCATCTTCTCTCATATCTTTGGGAC 59.072 42.308 0.00 0.00 0.00 4.46
97 98 6.612863 TCATCTTCTCTCATATCTTTGGGACA 59.387 38.462 0.00 0.00 0.00 4.02
98 99 6.227298 TCTTCTCTCATATCTTTGGGACAC 57.773 41.667 0.00 0.00 39.29 3.67
99 100 5.129485 TCTTCTCTCATATCTTTGGGACACC 59.871 44.000 0.00 0.00 39.29 4.16
100 101 3.711704 TCTCTCATATCTTTGGGACACCC 59.288 47.826 0.00 0.00 45.71 4.61
110 111 3.430473 GGGACACCCATGAACAACA 57.570 52.632 0.00 0.00 44.65 3.33
111 112 1.698506 GGGACACCCATGAACAACAA 58.301 50.000 0.00 0.00 44.65 2.83
112 113 2.247358 GGGACACCCATGAACAACAAT 58.753 47.619 0.00 0.00 44.65 2.71
113 114 3.426615 GGGACACCCATGAACAACAATA 58.573 45.455 0.00 0.00 44.65 1.90
114 115 3.443681 GGGACACCCATGAACAACAATAG 59.556 47.826 0.00 0.00 44.65 1.73
115 116 4.079253 GGACACCCATGAACAACAATAGT 58.921 43.478 0.00 0.00 0.00 2.12
116 117 5.250200 GGACACCCATGAACAACAATAGTA 58.750 41.667 0.00 0.00 0.00 1.82
117 118 5.885912 GGACACCCATGAACAACAATAGTAT 59.114 40.000 0.00 0.00 0.00 2.12
118 119 6.377146 GGACACCCATGAACAACAATAGTATT 59.623 38.462 0.00 0.00 0.00 1.89
119 120 7.391148 ACACCCATGAACAACAATAGTATTC 57.609 36.000 0.00 0.00 0.00 1.75
120 121 6.945435 ACACCCATGAACAACAATAGTATTCA 59.055 34.615 0.00 0.00 34.03 2.57
121 122 7.615365 ACACCCATGAACAACAATAGTATTCAT 59.385 33.333 0.00 0.00 39.90 2.57
124 125 7.599054 CATGAACAACAATAGTATTCATGCG 57.401 36.000 16.11 0.00 45.57 4.73
125 126 6.735678 TGAACAACAATAGTATTCATGCGT 57.264 33.333 0.00 0.00 0.00 5.24
126 127 7.835634 TGAACAACAATAGTATTCATGCGTA 57.164 32.000 0.00 0.00 0.00 4.42
127 128 7.905126 TGAACAACAATAGTATTCATGCGTAG 58.095 34.615 0.00 0.00 0.00 3.51
128 129 7.762159 TGAACAACAATAGTATTCATGCGTAGA 59.238 33.333 0.00 0.00 0.00 2.59
129 130 7.700322 ACAACAATAGTATTCATGCGTAGAG 57.300 36.000 0.00 0.00 0.00 2.43
130 131 6.701841 ACAACAATAGTATTCATGCGTAGAGG 59.298 38.462 0.00 0.00 0.00 3.69
131 132 6.650427 ACAATAGTATTCATGCGTAGAGGA 57.350 37.500 0.00 0.00 0.00 3.71
132 133 6.682746 ACAATAGTATTCATGCGTAGAGGAG 58.317 40.000 0.00 0.00 0.00 3.69
133 134 6.265649 ACAATAGTATTCATGCGTAGAGGAGT 59.734 38.462 0.00 0.00 0.00 3.85
134 135 4.576216 AGTATTCATGCGTAGAGGAGTG 57.424 45.455 0.00 0.00 0.00 3.51
135 136 2.898729 ATTCATGCGTAGAGGAGTGG 57.101 50.000 0.00 0.00 0.00 4.00
136 137 1.847328 TTCATGCGTAGAGGAGTGGA 58.153 50.000 0.00 0.00 0.00 4.02
137 138 1.393603 TCATGCGTAGAGGAGTGGAG 58.606 55.000 0.00 0.00 0.00 3.86
138 139 0.249238 CATGCGTAGAGGAGTGGAGC 60.249 60.000 0.00 0.00 0.00 4.70
139 140 0.684479 ATGCGTAGAGGAGTGGAGCA 60.684 55.000 0.00 0.00 37.54 4.26
140 141 1.139947 GCGTAGAGGAGTGGAGCAC 59.860 63.158 0.00 0.00 34.10 4.40
142 143 2.017623 GCGTAGAGGAGTGGAGCACTA 61.018 57.143 0.00 0.00 45.44 2.74
143 144 1.944024 CGTAGAGGAGTGGAGCACTAG 59.056 57.143 0.00 0.00 45.44 2.57
144 145 2.681390 CGTAGAGGAGTGGAGCACTAGT 60.681 54.545 0.00 0.00 45.44 2.57
145 146 2.614134 AGAGGAGTGGAGCACTAGTT 57.386 50.000 0.00 0.00 45.44 2.24
146 147 2.175202 AGAGGAGTGGAGCACTAGTTG 58.825 52.381 0.00 0.00 45.44 3.16
154 155 4.988065 GCACTAGTTGCCTCGACA 57.012 55.556 0.00 0.00 46.63 4.35
155 156 3.210857 GCACTAGTTGCCTCGACAA 57.789 52.632 0.00 0.00 46.63 3.18
156 157 1.726853 GCACTAGTTGCCTCGACAAT 58.273 50.000 0.00 0.00 46.63 2.71
157 158 1.394917 GCACTAGTTGCCTCGACAATG 59.605 52.381 0.00 0.00 46.63 2.82
158 159 2.688507 CACTAGTTGCCTCGACAATGT 58.311 47.619 0.00 0.00 0.00 2.71
159 160 3.067106 CACTAGTTGCCTCGACAATGTT 58.933 45.455 0.00 0.00 0.00 2.71
160 161 3.498397 CACTAGTTGCCTCGACAATGTTT 59.502 43.478 0.00 0.00 0.00 2.83
161 162 4.024048 CACTAGTTGCCTCGACAATGTTTT 60.024 41.667 0.00 0.00 0.00 2.43
162 163 5.178623 CACTAGTTGCCTCGACAATGTTTTA 59.821 40.000 0.00 0.00 0.00 1.52
163 164 4.749245 AGTTGCCTCGACAATGTTTTAG 57.251 40.909 0.00 0.00 0.00 1.85
164 165 4.134563 AGTTGCCTCGACAATGTTTTAGT 58.865 39.130 0.00 0.00 0.00 2.24
165 166 4.024048 AGTTGCCTCGACAATGTTTTAGTG 60.024 41.667 0.00 0.00 0.00 2.74
166 167 2.225491 TGCCTCGACAATGTTTTAGTGC 59.775 45.455 0.00 0.00 0.00 4.40
167 168 2.225491 GCCTCGACAATGTTTTAGTGCA 59.775 45.455 0.00 0.00 0.00 4.57
168 169 3.667960 GCCTCGACAATGTTTTAGTGCAG 60.668 47.826 0.00 0.00 0.00 4.41
169 170 3.498397 CCTCGACAATGTTTTAGTGCAGT 59.502 43.478 0.00 0.00 0.00 4.40
170 171 4.688879 CCTCGACAATGTTTTAGTGCAGTA 59.311 41.667 0.00 0.00 0.00 2.74
171 172 5.389516 CCTCGACAATGTTTTAGTGCAGTAC 60.390 44.000 0.00 0.00 0.00 2.73
172 173 5.294356 TCGACAATGTTTTAGTGCAGTACT 58.706 37.500 0.00 0.00 43.56 2.73
173 174 5.404366 TCGACAATGTTTTAGTGCAGTACTC 59.596 40.000 0.00 0.00 40.89 2.59
174 175 5.389516 CGACAATGTTTTAGTGCAGTACTCC 60.390 44.000 0.00 0.00 40.89 3.85
175 176 4.760204 ACAATGTTTTAGTGCAGTACTCCC 59.240 41.667 0.00 0.00 40.89 4.30
176 177 3.412237 TGTTTTAGTGCAGTACTCCCC 57.588 47.619 0.00 0.00 40.89 4.81
177 178 2.706723 TGTTTTAGTGCAGTACTCCCCA 59.293 45.455 0.00 0.00 40.89 4.96
178 179 3.329520 TGTTTTAGTGCAGTACTCCCCAT 59.670 43.478 0.00 0.00 40.89 4.00
179 180 4.202524 TGTTTTAGTGCAGTACTCCCCATT 60.203 41.667 0.00 0.00 40.89 3.16
180 181 3.906720 TTAGTGCAGTACTCCCCATTC 57.093 47.619 0.00 0.00 40.89 2.67
181 182 1.958288 AGTGCAGTACTCCCCATTCT 58.042 50.000 0.00 0.00 33.17 2.40
182 183 1.556911 AGTGCAGTACTCCCCATTCTG 59.443 52.381 0.00 0.00 33.17 3.02
183 184 1.279271 GTGCAGTACTCCCCATTCTGT 59.721 52.381 0.00 0.00 0.00 3.41
184 185 1.985159 TGCAGTACTCCCCATTCTGTT 59.015 47.619 0.00 0.00 0.00 3.16
185 186 2.290260 TGCAGTACTCCCCATTCTGTTG 60.290 50.000 0.00 0.00 0.00 3.33
186 187 2.941415 GCAGTACTCCCCATTCTGTTGG 60.941 54.545 0.00 0.00 36.46 3.77
187 188 2.571653 CAGTACTCCCCATTCTGTTGGA 59.428 50.000 0.00 0.00 39.25 3.53
188 189 2.572104 AGTACTCCCCATTCTGTTGGAC 59.428 50.000 0.00 0.00 39.25 4.02
189 190 1.747444 ACTCCCCATTCTGTTGGACT 58.253 50.000 0.00 0.00 39.25 3.85
190 191 1.630878 ACTCCCCATTCTGTTGGACTC 59.369 52.381 0.00 0.00 39.25 3.36
191 192 0.991920 TCCCCATTCTGTTGGACTCC 59.008 55.000 0.00 0.00 39.25 3.85
192 193 0.392998 CCCCATTCTGTTGGACTCCG 60.393 60.000 0.00 0.00 39.25 4.63
193 194 0.392998 CCCATTCTGTTGGACTCCGG 60.393 60.000 0.00 0.00 39.25 5.14
194 195 0.324943 CCATTCTGTTGGACTCCGGT 59.675 55.000 0.00 0.00 39.25 5.28
195 196 1.553248 CCATTCTGTTGGACTCCGGTA 59.447 52.381 0.00 0.00 39.25 4.02
196 197 2.618053 CATTCTGTTGGACTCCGGTAC 58.382 52.381 0.00 0.00 0.00 3.34
197 198 1.707106 TTCTGTTGGACTCCGGTACA 58.293 50.000 0.00 0.00 33.91 2.90
198 199 1.707106 TCTGTTGGACTCCGGTACAA 58.293 50.000 0.00 0.00 43.32 2.41
199 200 2.040939 TCTGTTGGACTCCGGTACAAA 58.959 47.619 0.00 0.00 46.49 2.83
200 201 2.635915 TCTGTTGGACTCCGGTACAAAT 59.364 45.455 0.00 0.00 46.49 2.32
201 202 3.000727 CTGTTGGACTCCGGTACAAATC 58.999 50.000 0.00 0.00 46.49 2.17
202 203 2.635915 TGTTGGACTCCGGTACAAATCT 59.364 45.455 0.00 0.00 46.49 2.40
203 204 3.000727 GTTGGACTCCGGTACAAATCTG 58.999 50.000 0.00 0.00 46.49 2.90
204 205 2.531771 TGGACTCCGGTACAAATCTGA 58.468 47.619 0.00 0.00 32.59 3.27
205 206 2.901192 TGGACTCCGGTACAAATCTGAA 59.099 45.455 0.00 0.00 32.59 3.02
206 207 3.056107 TGGACTCCGGTACAAATCTGAAG 60.056 47.826 0.00 0.00 32.59 3.02
207 208 3.056035 GGACTCCGGTACAAATCTGAAGT 60.056 47.826 0.00 0.00 0.00 3.01
208 209 4.159135 GGACTCCGGTACAAATCTGAAGTA 59.841 45.833 0.00 0.00 0.00 2.24
209 210 5.326200 ACTCCGGTACAAATCTGAAGTAG 57.674 43.478 0.00 0.00 0.00 2.57
210 211 4.159879 ACTCCGGTACAAATCTGAAGTAGG 59.840 45.833 0.00 0.00 0.00 3.18
211 212 4.346730 TCCGGTACAAATCTGAAGTAGGA 58.653 43.478 0.00 0.00 0.00 2.94
212 213 4.960469 TCCGGTACAAATCTGAAGTAGGAT 59.040 41.667 0.00 0.00 0.00 3.24
213 214 5.050490 CCGGTACAAATCTGAAGTAGGATG 58.950 45.833 0.00 0.00 0.00 3.51
214 215 5.395324 CCGGTACAAATCTGAAGTAGGATGT 60.395 44.000 0.00 0.00 0.00 3.06
215 216 6.106673 CGGTACAAATCTGAAGTAGGATGTT 58.893 40.000 0.00 0.00 0.00 2.71
216 217 6.594159 CGGTACAAATCTGAAGTAGGATGTTT 59.406 38.462 0.00 0.00 0.00 2.83
217 218 7.413000 CGGTACAAATCTGAAGTAGGATGTTTG 60.413 40.741 0.00 0.00 0.00 2.93
218 219 7.606456 GGTACAAATCTGAAGTAGGATGTTTGA 59.394 37.037 0.00 0.00 0.00 2.69
219 220 7.440523 ACAAATCTGAAGTAGGATGTTTGAC 57.559 36.000 0.00 0.00 0.00 3.18
220 221 6.431234 ACAAATCTGAAGTAGGATGTTTGACC 59.569 38.462 0.00 0.00 0.00 4.02
221 222 5.762179 ATCTGAAGTAGGATGTTTGACCA 57.238 39.130 0.00 0.00 0.00 4.02
222 223 5.762179 TCTGAAGTAGGATGTTTGACCAT 57.238 39.130 0.00 0.00 0.00 3.55
223 224 5.491070 TCTGAAGTAGGATGTTTGACCATG 58.509 41.667 0.00 0.00 0.00 3.66
224 225 4.588899 TGAAGTAGGATGTTTGACCATGG 58.411 43.478 11.19 11.19 0.00 3.66
225 226 4.288366 TGAAGTAGGATGTTTGACCATGGA 59.712 41.667 21.47 0.00 0.00 3.41
226 227 4.927267 AGTAGGATGTTTGACCATGGAA 57.073 40.909 21.47 2.77 0.00 3.53
227 228 5.255397 AGTAGGATGTTTGACCATGGAAA 57.745 39.130 21.47 9.75 0.00 3.13
228 229 5.640147 AGTAGGATGTTTGACCATGGAAAA 58.360 37.500 21.47 15.45 0.00 2.29
229 230 6.256053 AGTAGGATGTTTGACCATGGAAAAT 58.744 36.000 21.47 2.43 0.00 1.82
230 231 5.665916 AGGATGTTTGACCATGGAAAATC 57.334 39.130 21.47 12.21 0.00 2.17
231 232 4.158394 AGGATGTTTGACCATGGAAAATCG 59.842 41.667 21.47 0.00 0.00 3.34
232 233 4.157656 GGATGTTTGACCATGGAAAATCGA 59.842 41.667 21.47 1.79 0.00 3.59
233 234 5.336372 GGATGTTTGACCATGGAAAATCGAA 60.336 40.000 21.47 8.74 0.00 3.71
234 235 5.720371 TGTTTGACCATGGAAAATCGAAT 57.280 34.783 21.47 0.00 0.00 3.34
235 236 5.468592 TGTTTGACCATGGAAAATCGAATG 58.531 37.500 21.47 0.00 0.00 2.67
236 237 5.010516 TGTTTGACCATGGAAAATCGAATGT 59.989 36.000 21.47 0.00 0.00 2.71
237 238 5.720371 TTGACCATGGAAAATCGAATGTT 57.280 34.783 21.47 0.00 0.00 2.71
238 239 5.720371 TGACCATGGAAAATCGAATGTTT 57.280 34.783 21.47 0.00 0.00 2.83
239 240 6.095432 TGACCATGGAAAATCGAATGTTTT 57.905 33.333 21.47 0.00 0.00 2.43
240 241 6.155827 TGACCATGGAAAATCGAATGTTTTC 58.844 36.000 21.47 12.30 42.17 2.29
241 242 6.095432 ACCATGGAAAATCGAATGTTTTCA 57.905 33.333 21.47 12.04 43.78 2.69
242 243 6.700352 ACCATGGAAAATCGAATGTTTTCAT 58.300 32.000 21.47 13.41 43.78 2.57
257 258 7.945033 ATGTTTTCATTGCAAATTACGTTCT 57.055 28.000 1.71 0.00 37.19 3.01
258 259 7.388290 TGTTTTCATTGCAAATTACGTTCTC 57.612 32.000 1.71 0.00 0.00 2.87
259 260 6.419413 TGTTTTCATTGCAAATTACGTTCTCC 59.581 34.615 1.71 0.00 0.00 3.71
260 261 4.335082 TCATTGCAAATTACGTTCTCCG 57.665 40.909 1.71 0.00 44.03 4.63
261 262 3.997681 TCATTGCAAATTACGTTCTCCGA 59.002 39.130 1.71 0.00 40.70 4.55
262 263 4.092821 TCATTGCAAATTACGTTCTCCGAG 59.907 41.667 1.71 0.00 40.70 4.63
263 264 2.343101 TGCAAATTACGTTCTCCGAGG 58.657 47.619 0.00 0.00 40.70 4.63
264 265 2.028839 TGCAAATTACGTTCTCCGAGGA 60.029 45.455 0.00 0.00 40.70 3.71
265 266 3.195661 GCAAATTACGTTCTCCGAGGAT 58.804 45.455 0.00 0.00 40.70 3.24
266 267 3.001330 GCAAATTACGTTCTCCGAGGATG 59.999 47.826 0.00 0.00 40.70 3.51
267 268 4.181578 CAAATTACGTTCTCCGAGGATGT 58.818 43.478 6.77 6.77 40.70 3.06
268 269 3.712091 ATTACGTTCTCCGAGGATGTC 57.288 47.619 4.70 0.00 40.70 3.06
269 270 2.118313 TACGTTCTCCGAGGATGTCA 57.882 50.000 4.70 0.00 40.70 3.58
270 271 1.254026 ACGTTCTCCGAGGATGTCAA 58.746 50.000 0.00 0.00 40.70 3.18
271 272 1.202582 ACGTTCTCCGAGGATGTCAAG 59.797 52.381 0.00 0.00 40.70 3.02
272 273 1.202582 CGTTCTCCGAGGATGTCAAGT 59.797 52.381 0.00 0.00 39.56 3.16
273 274 2.352814 CGTTCTCCGAGGATGTCAAGTT 60.353 50.000 0.00 0.00 39.56 2.66
274 275 3.665190 GTTCTCCGAGGATGTCAAGTTT 58.335 45.455 0.00 0.00 0.00 2.66
275 276 4.617530 CGTTCTCCGAGGATGTCAAGTTTA 60.618 45.833 0.00 0.00 39.56 2.01
276 277 4.720649 TCTCCGAGGATGTCAAGTTTAG 57.279 45.455 0.00 0.00 0.00 1.85
277 278 4.087182 TCTCCGAGGATGTCAAGTTTAGT 58.913 43.478 0.00 0.00 0.00 2.24
278 279 4.527038 TCTCCGAGGATGTCAAGTTTAGTT 59.473 41.667 0.00 0.00 0.00 2.24
279 280 4.566004 TCCGAGGATGTCAAGTTTAGTTG 58.434 43.478 0.00 0.00 0.00 3.16
280 281 3.684788 CCGAGGATGTCAAGTTTAGTTGG 59.315 47.826 0.00 0.00 0.00 3.77
281 282 3.125316 CGAGGATGTCAAGTTTAGTTGGC 59.875 47.826 0.00 0.00 32.36 4.52
282 283 3.074412 AGGATGTCAAGTTTAGTTGGCG 58.926 45.455 0.00 0.00 34.60 5.69
283 284 3.071479 GGATGTCAAGTTTAGTTGGCGA 58.929 45.455 0.00 0.00 34.60 5.54
284 285 3.125316 GGATGTCAAGTTTAGTTGGCGAG 59.875 47.826 0.00 0.00 34.60 5.03
285 286 3.188159 TGTCAAGTTTAGTTGGCGAGT 57.812 42.857 0.00 0.00 34.60 4.18
286 287 4.325028 TGTCAAGTTTAGTTGGCGAGTA 57.675 40.909 0.00 0.00 34.60 2.59
287 288 4.890088 TGTCAAGTTTAGTTGGCGAGTAT 58.110 39.130 0.00 0.00 34.60 2.12
288 289 4.688879 TGTCAAGTTTAGTTGGCGAGTATG 59.311 41.667 0.00 0.00 34.60 2.39
289 290 4.092968 GTCAAGTTTAGTTGGCGAGTATGG 59.907 45.833 0.00 0.00 0.00 2.74
290 291 2.629051 AGTTTAGTTGGCGAGTATGGC 58.371 47.619 0.00 0.00 40.04 4.40
291 292 2.027561 AGTTTAGTTGGCGAGTATGGCA 60.028 45.455 0.00 0.00 43.90 4.92
296 297 3.094386 TGGCGAGTATGGCAAATCC 57.906 52.632 0.00 0.00 43.90 3.01
297 298 0.813610 TGGCGAGTATGGCAAATCCG 60.814 55.000 0.00 0.00 43.90 4.18
298 299 1.279840 GCGAGTATGGCAAATCCGC 59.720 57.895 10.77 10.77 40.68 5.54
309 310 3.782889 GCAAATCCGCCTCAGTTTATT 57.217 42.857 0.00 0.00 0.00 1.40
310 311 4.110036 GCAAATCCGCCTCAGTTTATTT 57.890 40.909 0.00 0.00 0.00 1.40
311 312 4.494484 GCAAATCCGCCTCAGTTTATTTT 58.506 39.130 0.00 0.00 0.00 1.82
312 313 4.929211 GCAAATCCGCCTCAGTTTATTTTT 59.071 37.500 0.00 0.00 0.00 1.94
313 314 5.062183 GCAAATCCGCCTCAGTTTATTTTTC 59.938 40.000 0.00 0.00 0.00 2.29
314 315 4.616181 ATCCGCCTCAGTTTATTTTTCG 57.384 40.909 0.00 0.00 0.00 3.46
315 316 3.404899 TCCGCCTCAGTTTATTTTTCGT 58.595 40.909 0.00 0.00 0.00 3.85
316 317 3.187637 TCCGCCTCAGTTTATTTTTCGTG 59.812 43.478 0.00 0.00 0.00 4.35
317 318 3.187637 CCGCCTCAGTTTATTTTTCGTGA 59.812 43.478 0.00 0.00 0.00 4.35
318 319 4.394795 CGCCTCAGTTTATTTTTCGTGAG 58.605 43.478 0.00 0.00 32.81 3.51
319 320 4.151689 CGCCTCAGTTTATTTTTCGTGAGA 59.848 41.667 0.00 0.00 34.57 3.27
332 333 3.380479 TCGTGAGAAAATTGTCGTCCT 57.620 42.857 0.00 0.00 37.03 3.85
333 334 3.724374 TCGTGAGAAAATTGTCGTCCTT 58.276 40.909 0.00 0.00 37.03 3.36
334 335 3.493129 TCGTGAGAAAATTGTCGTCCTTG 59.507 43.478 0.00 0.00 37.03 3.61
335 336 3.555518 GTGAGAAAATTGTCGTCCTTGC 58.444 45.455 0.00 0.00 0.00 4.01
336 337 3.003275 GTGAGAAAATTGTCGTCCTTGCA 59.997 43.478 0.00 0.00 0.00 4.08
337 338 3.629855 TGAGAAAATTGTCGTCCTTGCAA 59.370 39.130 0.00 0.00 0.00 4.08
338 339 4.097135 TGAGAAAATTGTCGTCCTTGCAAA 59.903 37.500 0.00 0.00 0.00 3.68
339 340 4.359706 AGAAAATTGTCGTCCTTGCAAAC 58.640 39.130 0.00 0.00 0.00 2.93
340 341 4.097892 AGAAAATTGTCGTCCTTGCAAACT 59.902 37.500 0.00 0.00 0.00 2.66
341 342 5.298276 AGAAAATTGTCGTCCTTGCAAACTA 59.702 36.000 0.00 0.00 0.00 2.24
342 343 5.508200 AAATTGTCGTCCTTGCAAACTAA 57.492 34.783 0.00 0.00 0.00 2.24
343 344 5.508200 AATTGTCGTCCTTGCAAACTAAA 57.492 34.783 0.00 0.00 0.00 1.85
344 345 5.705609 ATTGTCGTCCTTGCAAACTAAAT 57.294 34.783 0.00 0.00 0.00 1.40
345 346 5.508200 TTGTCGTCCTTGCAAACTAAATT 57.492 34.783 0.00 0.00 0.00 1.82
346 347 5.508200 TGTCGTCCTTGCAAACTAAATTT 57.492 34.783 0.00 0.00 0.00 1.82
357 358 5.379757 CAAACTAAATTTGCCATCATCGC 57.620 39.130 0.00 0.00 41.30 4.58
358 359 3.338818 ACTAAATTTGCCATCATCGCG 57.661 42.857 0.00 0.00 0.00 5.87
359 360 2.046313 CTAAATTTGCCATCATCGCGC 58.954 47.619 0.00 0.00 0.00 6.86
360 361 0.528249 AAATTTGCCATCATCGCGCC 60.528 50.000 0.00 0.00 0.00 6.53
361 362 1.665264 AATTTGCCATCATCGCGCCA 61.665 50.000 0.00 0.00 0.00 5.69
362 363 1.665264 ATTTGCCATCATCGCGCCAA 61.665 50.000 0.00 0.00 0.00 4.52
363 364 2.540736 TTTGCCATCATCGCGCCAAC 62.541 55.000 0.00 0.00 0.00 3.77
364 365 3.507924 GCCATCATCGCGCCAACA 61.508 61.111 0.00 0.00 0.00 3.33
365 366 2.837883 GCCATCATCGCGCCAACAT 61.838 57.895 0.00 0.00 0.00 2.71
366 367 1.506309 GCCATCATCGCGCCAACATA 61.506 55.000 0.00 0.00 0.00 2.29
367 368 0.943673 CCATCATCGCGCCAACATAA 59.056 50.000 0.00 0.00 0.00 1.90
368 369 1.333308 CCATCATCGCGCCAACATAAA 59.667 47.619 0.00 0.00 0.00 1.40
369 370 2.030893 CCATCATCGCGCCAACATAAAT 60.031 45.455 0.00 0.00 0.00 1.40
370 371 3.550639 CCATCATCGCGCCAACATAAATT 60.551 43.478 0.00 0.00 0.00 1.82
371 372 3.773860 TCATCGCGCCAACATAAATTT 57.226 38.095 0.00 0.00 0.00 1.82
372 373 3.690422 TCATCGCGCCAACATAAATTTC 58.310 40.909 0.00 0.00 0.00 2.17
373 374 2.553079 TCGCGCCAACATAAATTTCC 57.447 45.000 0.00 0.00 0.00 3.13
374 375 1.813178 TCGCGCCAACATAAATTTCCA 59.187 42.857 0.00 0.00 0.00 3.53
375 376 2.425312 TCGCGCCAACATAAATTTCCAT 59.575 40.909 0.00 0.00 0.00 3.41
376 377 2.788786 CGCGCCAACATAAATTTCCATC 59.211 45.455 0.00 0.00 0.00 3.51
377 378 3.733380 CGCGCCAACATAAATTTCCATCA 60.733 43.478 0.00 0.00 0.00 3.07
378 379 4.180057 GCGCCAACATAAATTTCCATCAA 58.820 39.130 0.00 0.00 0.00 2.57
379 380 4.810491 GCGCCAACATAAATTTCCATCAAT 59.190 37.500 0.00 0.00 0.00 2.57
380 381 5.982516 GCGCCAACATAAATTTCCATCAATA 59.017 36.000 0.00 0.00 0.00 1.90
381 382 6.478344 GCGCCAACATAAATTTCCATCAATAA 59.522 34.615 0.00 0.00 0.00 1.40
382 383 7.516627 GCGCCAACATAAATTTCCATCAATAAC 60.517 37.037 0.00 0.00 0.00 1.89
383 384 7.305935 CGCCAACATAAATTTCCATCAATAACG 60.306 37.037 0.00 0.00 0.00 3.18
384 385 7.491048 GCCAACATAAATTTCCATCAATAACGT 59.509 33.333 0.00 0.00 0.00 3.99
385 386 9.364989 CCAACATAAATTTCCATCAATAACGTT 57.635 29.630 5.88 5.88 0.00 3.99
398 399 8.745837 CCATCAATAACGTTAAATTCTTCATGC 58.254 33.333 12.81 0.00 0.00 4.06
399 400 9.507280 CATCAATAACGTTAAATTCTTCATGCT 57.493 29.630 12.81 0.00 0.00 3.79
412 413 9.985730 AAATTCTTCATGCTTAAAAATCTGACA 57.014 25.926 0.00 0.00 0.00 3.58
413 414 9.635520 AATTCTTCATGCTTAAAAATCTGACAG 57.364 29.630 0.00 0.00 0.00 3.51
414 415 7.750229 TCTTCATGCTTAAAAATCTGACAGT 57.250 32.000 1.59 0.00 0.00 3.55
415 416 7.587629 TCTTCATGCTTAAAAATCTGACAGTG 58.412 34.615 1.59 0.00 0.00 3.66
416 417 6.882610 TCATGCTTAAAAATCTGACAGTGT 57.117 33.333 0.00 0.00 0.00 3.55
417 418 7.275888 TCATGCTTAAAAATCTGACAGTGTT 57.724 32.000 0.00 0.00 0.00 3.32
418 419 7.715657 TCATGCTTAAAAATCTGACAGTGTTT 58.284 30.769 0.00 2.90 0.00 2.83
419 420 8.196771 TCATGCTTAAAAATCTGACAGTGTTTT 58.803 29.630 17.15 17.15 0.00 2.43
420 421 7.985634 TGCTTAAAAATCTGACAGTGTTTTC 57.014 32.000 16.74 8.81 0.00 2.29
421 422 6.690957 TGCTTAAAAATCTGACAGTGTTTTCG 59.309 34.615 16.74 12.45 0.00 3.46
422 423 6.691388 GCTTAAAAATCTGACAGTGTTTTCGT 59.309 34.615 16.74 8.85 0.00 3.85
423 424 7.220108 GCTTAAAAATCTGACAGTGTTTTCGTT 59.780 33.333 16.74 8.37 0.00 3.85
424 425 8.973835 TTAAAAATCTGACAGTGTTTTCGTTT 57.026 26.923 16.74 8.13 0.00 3.60
425 426 7.506296 AAAAATCTGACAGTGTTTTCGTTTC 57.494 32.000 16.17 0.00 0.00 2.78
426 427 6.436843 AAATCTGACAGTGTTTTCGTTTCT 57.563 33.333 0.00 0.00 0.00 2.52
427 428 6.436843 AATCTGACAGTGTTTTCGTTTCTT 57.563 33.333 0.00 0.00 0.00 2.52
428 429 5.873179 TCTGACAGTGTTTTCGTTTCTTT 57.127 34.783 0.00 0.00 0.00 2.52
429 430 6.249035 TCTGACAGTGTTTTCGTTTCTTTT 57.751 33.333 0.00 0.00 0.00 2.27
430 431 6.674066 TCTGACAGTGTTTTCGTTTCTTTTT 58.326 32.000 0.00 0.00 0.00 1.94
431 432 7.808672 TCTGACAGTGTTTTCGTTTCTTTTTA 58.191 30.769 0.00 0.00 0.00 1.52
432 433 7.747357 TCTGACAGTGTTTTCGTTTCTTTTTAC 59.253 33.333 0.00 0.00 0.00 2.01
433 434 7.586747 TGACAGTGTTTTCGTTTCTTTTTACT 58.413 30.769 0.00 0.00 0.00 2.24
434 435 8.077386 TGACAGTGTTTTCGTTTCTTTTTACTT 58.923 29.630 0.00 0.00 0.00 2.24
435 436 8.806177 ACAGTGTTTTCGTTTCTTTTTACTTT 57.194 26.923 0.00 0.00 0.00 2.66
436 437 8.696175 ACAGTGTTTTCGTTTCTTTTTACTTTG 58.304 29.630 0.00 0.00 0.00 2.77
437 438 8.696175 CAGTGTTTTCGTTTCTTTTTACTTTGT 58.304 29.630 0.00 0.00 0.00 2.83
438 439 8.696175 AGTGTTTTCGTTTCTTTTTACTTTGTG 58.304 29.630 0.00 0.00 0.00 3.33
439 440 8.481641 GTGTTTTCGTTTCTTTTTACTTTGTGT 58.518 29.630 0.00 0.00 0.00 3.72
440 441 9.674824 TGTTTTCGTTTCTTTTTACTTTGTGTA 57.325 25.926 0.00 0.00 0.00 2.90
446 447 8.898792 CGTTTCTTTTTACTTTGTGTATTAGGC 58.101 33.333 0.00 0.00 0.00 3.93
447 448 9.961265 GTTTCTTTTTACTTTGTGTATTAGGCT 57.039 29.630 0.00 0.00 0.00 4.58
449 450 9.959749 TTCTTTTTACTTTGTGTATTAGGCTTG 57.040 29.630 0.00 0.00 0.00 4.01
450 451 9.127277 TCTTTTTACTTTGTGTATTAGGCTTGT 57.873 29.630 0.00 0.00 0.00 3.16
451 452 9.394477 CTTTTTACTTTGTGTATTAGGCTTGTC 57.606 33.333 0.00 0.00 0.00 3.18
452 453 8.685838 TTTTACTTTGTGTATTAGGCTTGTCT 57.314 30.769 0.00 0.00 0.00 3.41
453 454 7.667043 TTACTTTGTGTATTAGGCTTGTCTG 57.333 36.000 0.00 0.00 0.00 3.51
454 455 5.865085 ACTTTGTGTATTAGGCTTGTCTGA 58.135 37.500 0.00 0.00 0.00 3.27
455 456 6.296026 ACTTTGTGTATTAGGCTTGTCTGAA 58.704 36.000 0.00 0.00 0.00 3.02
456 457 6.428159 ACTTTGTGTATTAGGCTTGTCTGAAG 59.572 38.462 0.00 0.00 0.00 3.02
457 458 5.483685 TGTGTATTAGGCTTGTCTGAAGT 57.516 39.130 0.00 0.00 0.00 3.01
458 459 5.479306 TGTGTATTAGGCTTGTCTGAAGTC 58.521 41.667 0.00 0.00 0.00 3.01
459 460 5.011635 TGTGTATTAGGCTTGTCTGAAGTCA 59.988 40.000 0.00 0.00 0.00 3.41
460 461 5.932303 GTGTATTAGGCTTGTCTGAAGTCAA 59.068 40.000 0.00 0.00 0.00 3.18
461 462 6.426937 GTGTATTAGGCTTGTCTGAAGTCAAA 59.573 38.462 0.00 0.00 0.00 2.69
462 463 5.948992 ATTAGGCTTGTCTGAAGTCAAAC 57.051 39.130 0.00 0.00 0.00 2.93
463 464 3.567478 AGGCTTGTCTGAAGTCAAACT 57.433 42.857 0.00 0.00 0.00 2.66
464 465 3.891049 AGGCTTGTCTGAAGTCAAACTT 58.109 40.909 0.00 0.00 41.95 2.66
493 494 6.994421 AATTTGACCAAATTTGTACTCCCT 57.006 33.333 16.73 0.00 45.67 4.20
494 495 6.590234 ATTTGACCAAATTTGTACTCCCTC 57.410 37.500 16.73 1.25 37.74 4.30
495 496 4.028993 TGACCAAATTTGTACTCCCTCC 57.971 45.455 16.73 0.00 0.00 4.30
496 497 3.245122 TGACCAAATTTGTACTCCCTCCC 60.245 47.826 16.73 0.00 0.00 4.30
497 498 2.993863 ACCAAATTTGTACTCCCTCCCT 59.006 45.455 16.73 0.00 0.00 4.20
498 499 4.180723 ACCAAATTTGTACTCCCTCCCTA 58.819 43.478 16.73 0.00 0.00 3.53
499 500 4.794067 ACCAAATTTGTACTCCCTCCCTAT 59.206 41.667 16.73 0.00 0.00 2.57
500 501 5.104067 ACCAAATTTGTACTCCCTCCCTATC 60.104 44.000 16.73 0.00 0.00 2.08
501 502 5.104109 CCAAATTTGTACTCCCTCCCTATCA 60.104 44.000 16.73 0.00 0.00 2.15
502 503 6.423182 CAAATTTGTACTCCCTCCCTATCAA 58.577 40.000 10.15 0.00 0.00 2.57
503 504 6.652205 AATTTGTACTCCCTCCCTATCAAA 57.348 37.500 0.00 0.00 0.00 2.69
504 505 6.652205 ATTTGTACTCCCTCCCTATCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
505 506 6.652205 TTTGTACTCCCTCCCTATCAAAAT 57.348 37.500 0.00 0.00 0.00 1.82
506 507 7.758820 TTTGTACTCCCTCCCTATCAAAATA 57.241 36.000 0.00 0.00 0.00 1.40
507 508 7.947782 TTGTACTCCCTCCCTATCAAAATAT 57.052 36.000 0.00 0.00 0.00 1.28
508 509 9.455144 TTTGTACTCCCTCCCTATCAAAATATA 57.545 33.333 0.00 0.00 0.00 0.86
509 510 9.455144 TTGTACTCCCTCCCTATCAAAATATAA 57.545 33.333 0.00 0.00 0.00 0.98
510 511 9.101325 TGTACTCCCTCCCTATCAAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
511 512 7.575499 ACTCCCTCCCTATCAAAATATAAGG 57.425 40.000 0.00 0.00 0.00 2.69
512 513 6.012421 ACTCCCTCCCTATCAAAATATAAGGC 60.012 42.308 0.00 0.00 0.00 4.35
513 514 5.045869 TCCCTCCCTATCAAAATATAAGGCG 60.046 44.000 0.00 0.00 0.00 5.52
514 515 5.280521 CCCTCCCTATCAAAATATAAGGCGT 60.281 44.000 0.00 0.00 0.00 5.68
515 516 6.238648 CCTCCCTATCAAAATATAAGGCGTT 58.761 40.000 0.00 0.00 0.00 4.84
516 517 6.715264 CCTCCCTATCAAAATATAAGGCGTTT 59.285 38.462 0.00 0.00 0.00 3.60
517 518 7.230712 CCTCCCTATCAAAATATAAGGCGTTTT 59.769 37.037 0.00 0.00 0.00 2.43
518 519 8.528044 TCCCTATCAAAATATAAGGCGTTTTT 57.472 30.769 0.00 0.00 0.00 1.94
613 614 9.439500 TTTAGTATAAAGCGTATTTCCAAGTGT 57.561 29.630 0.00 0.00 0.00 3.55
620 621 8.959734 AAAGCGTATTTCCAAGTGTTTTATAC 57.040 30.769 0.00 0.00 0.00 1.47
621 622 7.916914 AGCGTATTTCCAAGTGTTTTATACT 57.083 32.000 0.00 0.00 0.00 2.12
622 623 8.331730 AGCGTATTTCCAAGTGTTTTATACTT 57.668 30.769 0.00 0.00 38.84 2.24
623 624 9.439500 AGCGTATTTCCAAGTGTTTTATACTTA 57.561 29.630 0.00 0.00 36.29 2.24
699 700 1.002403 TGGACTCCGATTGGCCCTA 59.998 57.895 0.00 0.00 34.14 3.53
731 735 1.043116 TCGGCTATGTCTCCCCAGTG 61.043 60.000 0.00 0.00 0.00 3.66
732 736 1.832912 GGCTATGTCTCCCCAGTGG 59.167 63.158 0.63 0.63 0.00 4.00
733 737 1.147153 GCTATGTCTCCCCAGTGGC 59.853 63.158 2.61 0.00 0.00 5.01
734 738 1.832912 CTATGTCTCCCCAGTGGCC 59.167 63.158 2.61 0.00 0.00 5.36
735 739 1.692749 TATGTCTCCCCAGTGGCCC 60.693 63.158 2.61 0.00 0.00 5.80
736 740 2.484868 TATGTCTCCCCAGTGGCCCA 62.485 60.000 2.61 0.00 0.00 5.36
737 741 3.721706 GTCTCCCCAGTGGCCCAG 61.722 72.222 2.61 0.00 0.00 4.45
738 742 4.270153 TCTCCCCAGTGGCCCAGT 62.270 66.667 2.61 0.00 0.00 4.00
791 795 2.550606 TGTCCGTGTTTGTTTGATAGCC 59.449 45.455 0.00 0.00 0.00 3.93
792 796 2.550606 GTCCGTGTTTGTTTGATAGCCA 59.449 45.455 0.00 0.00 0.00 4.75
793 797 3.190535 GTCCGTGTTTGTTTGATAGCCAT 59.809 43.478 0.00 0.00 0.00 4.40
794 798 3.823873 TCCGTGTTTGTTTGATAGCCATT 59.176 39.130 0.00 0.00 0.00 3.16
795 799 5.004448 TCCGTGTTTGTTTGATAGCCATTA 58.996 37.500 0.00 0.00 0.00 1.90
796 800 5.092781 CCGTGTTTGTTTGATAGCCATTAC 58.907 41.667 0.00 0.00 0.00 1.89
797 801 5.092781 CGTGTTTGTTTGATAGCCATTACC 58.907 41.667 0.00 0.00 0.00 2.85
798 802 5.106317 CGTGTTTGTTTGATAGCCATTACCT 60.106 40.000 0.00 0.00 0.00 3.08
977 987 6.270815 GTGAGCTTGATTCGTTGGTATACTA 58.729 40.000 2.25 0.00 0.00 1.82
1139 1150 1.347817 CTGCCGTCAAAGTCTCTCGC 61.348 60.000 0.00 0.00 0.00 5.03
1388 1402 1.404315 CCTCTGTTTCGTGGAGCCTAC 60.404 57.143 0.00 0.00 0.00 3.18
1455 1469 4.309950 GCCACCACCGACGTCCTT 62.310 66.667 10.58 0.00 0.00 3.36
1487 1501 2.032528 CACAGACGGTGGCACCAT 59.967 61.111 34.11 22.75 44.04 3.55
1504 1518 0.736325 CATGACCGACGTCCTCCAAC 60.736 60.000 10.58 0.00 38.32 3.77
1536 1550 1.372872 GGCGCCACAAATTCACACC 60.373 57.895 24.80 0.00 0.00 4.16
1650 1664 1.945354 GCGAGGTCTTCACCATCGGA 61.945 60.000 12.07 0.00 46.68 4.55
1655 1669 2.892425 CTTCACCATCGGAGCCGC 60.892 66.667 3.59 0.00 39.59 6.53
1656 1670 4.467084 TTCACCATCGGAGCCGCC 62.467 66.667 3.59 0.00 39.59 6.13
1737 1751 2.515523 GTCGACTCGATCCCCCGA 60.516 66.667 8.70 0.00 38.42 5.14
1780 1794 1.995626 GCCTACTTCCTGCCCTCCA 60.996 63.158 0.00 0.00 0.00 3.86
1782 1796 1.216990 CCTACTTCCTGCCCTCCAAT 58.783 55.000 0.00 0.00 0.00 3.16
1785 1799 0.329596 ACTTCCTGCCCTCCAATCAC 59.670 55.000 0.00 0.00 0.00 3.06
2046 2070 1.152525 GTCGAGGGGGCCATCTCTA 60.153 63.158 19.34 9.55 0.00 2.43
2058 2082 2.828877 CCATCTCTACGTCTCGACTCT 58.171 52.381 0.00 0.00 0.00 3.24
2099 2123 0.178990 GGGGAAACTCTGGCACAACT 60.179 55.000 0.00 0.00 38.70 3.16
2101 2125 2.152016 GGGAAACTCTGGCACAACTAC 58.848 52.381 0.00 0.00 38.70 2.73
2112 2136 2.005451 GCACAACTACTGATGGAGCTG 58.995 52.381 0.00 0.00 0.00 4.24
2148 2172 1.348036 GTGCTCTTTGTACCAGGGACT 59.652 52.381 2.57 0.00 43.88 3.85
2212 2242 1.826024 GTGATGGAGATGCCTCGGT 59.174 57.895 0.00 0.00 40.33 4.69
2215 2245 0.531532 GATGGAGATGCCTCGGTGTG 60.532 60.000 0.00 0.00 40.33 3.82
2216 2246 1.976132 ATGGAGATGCCTCGGTGTGG 61.976 60.000 0.00 0.00 40.33 4.17
2258 2291 1.301479 GCCTCCTTCCGTTTCGTGT 60.301 57.895 0.00 0.00 0.00 4.49
2373 2406 3.857052 TCATGGTTTGTCTGTATCCGTC 58.143 45.455 0.00 0.00 0.00 4.79
2467 2519 3.932822 TCTTCCAATAAGTAGTTGCGCA 58.067 40.909 5.66 5.66 0.00 6.09
2620 2672 5.221244 GCACTTGGGTCTTAACATGAAAAGT 60.221 40.000 0.00 0.00 0.00 2.66
2753 2805 4.642437 TGATTAGTCCATTAAAATGCCGCA 59.358 37.500 0.00 0.00 35.08 5.69
2756 2808 3.023119 AGTCCATTAAAATGCCGCATCA 58.977 40.909 6.27 0.00 35.08 3.07
2760 2812 3.243805 CCATTAAAATGCCGCATCATGGA 60.244 43.478 19.78 4.29 33.08 3.41
2770 2822 2.415893 CCGCATCATGGAAAGAACCAAC 60.416 50.000 0.00 0.00 43.47 3.77
2886 2938 3.125829 CGTGACTCAAGGAATTGACATGG 59.874 47.826 0.00 0.00 0.00 3.66
2921 2973 1.889829 AGACGGTTGTGGAGAGAGAAG 59.110 52.381 0.00 0.00 0.00 2.85
2927 2979 4.023291 GGTTGTGGAGAGAGAAGAGAGAT 58.977 47.826 0.00 0.00 0.00 2.75
2985 3037 1.086696 ATTGGATTGACGTGGCTTCG 58.913 50.000 0.00 1.70 0.00 3.79
2994 3046 2.288579 TGACGTGGCTTCGACTTACAAT 60.289 45.455 0.00 0.00 34.70 2.71
3064 3116 1.448119 TATCTGTCGCAGCCTCCTCG 61.448 60.000 2.45 0.00 0.00 4.63
3070 3122 2.757917 GCAGCCTCCTCGACCTCT 60.758 66.667 0.00 0.00 0.00 3.69
3119 3171 1.754803 CTTCCAGCACACTCGGGTATA 59.245 52.381 0.00 0.00 0.00 1.47
3154 3209 3.901797 CTGGACCACGCCAACCCTC 62.902 68.421 0.00 0.00 37.52 4.30
3177 3232 2.677228 CCATCTCCACCCCACCAC 59.323 66.667 0.00 0.00 0.00 4.16
3196 3251 1.004745 ACCCACCACCATCTCAATGTC 59.995 52.381 0.00 0.00 0.00 3.06
3197 3252 1.683011 CCCACCACCATCTCAATGTCC 60.683 57.143 0.00 0.00 0.00 4.02
3284 3339 8.502161 AATAACAAAGACGAACAAGCATAAAC 57.498 30.769 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.758651 AAAATTAGTAAGTGCCCTTAGTTTTTG 57.241 29.630 1.43 0.00 37.81 2.44
9 10 8.779031 ACCTAATCTAAAATTAGTAAGTGCCCT 58.221 33.333 0.46 0.00 31.47 5.19
10 11 8.837389 CACCTAATCTAAAATTAGTAAGTGCCC 58.163 37.037 0.46 0.00 31.47 5.36
11 12 8.837389 CCACCTAATCTAAAATTAGTAAGTGCC 58.163 37.037 0.46 0.00 31.47 5.01
12 13 9.609346 TCCACCTAATCTAAAATTAGTAAGTGC 57.391 33.333 0.46 0.00 31.47 4.40
18 19 7.873505 GCTCGATCCACCTAATCTAAAATTAGT 59.126 37.037 0.46 0.00 31.47 2.24
19 20 7.872993 TGCTCGATCCACCTAATCTAAAATTAG 59.127 37.037 0.00 0.00 0.00 1.73
20 21 7.732025 TGCTCGATCCACCTAATCTAAAATTA 58.268 34.615 0.00 0.00 0.00 1.40
21 22 6.591935 TGCTCGATCCACCTAATCTAAAATT 58.408 36.000 0.00 0.00 0.00 1.82
22 23 6.042093 TCTGCTCGATCCACCTAATCTAAAAT 59.958 38.462 0.00 0.00 0.00 1.82
23 24 5.362717 TCTGCTCGATCCACCTAATCTAAAA 59.637 40.000 0.00 0.00 0.00 1.52
24 25 4.893524 TCTGCTCGATCCACCTAATCTAAA 59.106 41.667 0.00 0.00 0.00 1.85
25 26 4.470602 TCTGCTCGATCCACCTAATCTAA 58.529 43.478 0.00 0.00 0.00 2.10
26 27 4.100279 TCTGCTCGATCCACCTAATCTA 57.900 45.455 0.00 0.00 0.00 1.98
27 28 2.950781 TCTGCTCGATCCACCTAATCT 58.049 47.619 0.00 0.00 0.00 2.40
28 29 3.951775 ATCTGCTCGATCCACCTAATC 57.048 47.619 0.00 0.00 0.00 1.75
29 30 4.382470 GCATATCTGCTCGATCCACCTAAT 60.382 45.833 0.00 0.00 45.32 1.73
30 31 3.056536 GCATATCTGCTCGATCCACCTAA 60.057 47.826 0.00 0.00 45.32 2.69
31 32 2.493675 GCATATCTGCTCGATCCACCTA 59.506 50.000 0.00 0.00 45.32 3.08
32 33 1.274728 GCATATCTGCTCGATCCACCT 59.725 52.381 0.00 0.00 45.32 4.00
33 34 1.719600 GCATATCTGCTCGATCCACC 58.280 55.000 0.00 0.00 45.32 4.61
45 46 9.878667 CTGATCTTATTTCAGATGAGCATATCT 57.121 33.333 0.00 0.00 42.63 1.98
46 47 9.656040 ACTGATCTTATTTCAGATGAGCATATC 57.344 33.333 7.63 0.00 42.63 1.63
47 48 9.656040 GACTGATCTTATTTCAGATGAGCATAT 57.344 33.333 7.63 0.00 42.63 1.78
48 49 8.645110 TGACTGATCTTATTTCAGATGAGCATA 58.355 33.333 7.63 0.00 42.63 3.14
49 50 7.506971 TGACTGATCTTATTTCAGATGAGCAT 58.493 34.615 7.63 0.00 42.63 3.79
50 51 6.881570 TGACTGATCTTATTTCAGATGAGCA 58.118 36.000 7.63 0.00 42.63 4.26
51 52 7.874016 AGATGACTGATCTTATTTCAGATGAGC 59.126 37.037 7.63 0.00 42.63 4.26
65 66 8.945195 AAGATATGAGAGAAGATGACTGATCT 57.055 34.615 0.00 0.00 43.91 2.75
66 67 9.414295 CAAAGATATGAGAGAAGATGACTGATC 57.586 37.037 0.00 0.00 0.00 2.92
67 68 8.369424 CCAAAGATATGAGAGAAGATGACTGAT 58.631 37.037 0.00 0.00 0.00 2.90
68 69 7.201983 CCCAAAGATATGAGAGAAGATGACTGA 60.202 40.741 0.00 0.00 0.00 3.41
69 70 6.930164 CCCAAAGATATGAGAGAAGATGACTG 59.070 42.308 0.00 0.00 0.00 3.51
70 71 6.843333 TCCCAAAGATATGAGAGAAGATGACT 59.157 38.462 0.00 0.00 0.00 3.41
71 72 6.928492 GTCCCAAAGATATGAGAGAAGATGAC 59.072 42.308 0.00 0.00 0.00 3.06
72 73 6.612863 TGTCCCAAAGATATGAGAGAAGATGA 59.387 38.462 0.00 0.00 0.00 2.92
73 74 6.705381 GTGTCCCAAAGATATGAGAGAAGATG 59.295 42.308 0.00 0.00 0.00 2.90
74 75 6.183361 GGTGTCCCAAAGATATGAGAGAAGAT 60.183 42.308 0.00 0.00 0.00 2.40
75 76 5.129485 GGTGTCCCAAAGATATGAGAGAAGA 59.871 44.000 0.00 0.00 0.00 2.87
76 77 5.363939 GGTGTCCCAAAGATATGAGAGAAG 58.636 45.833 0.00 0.00 0.00 2.85
77 78 4.164221 GGGTGTCCCAAAGATATGAGAGAA 59.836 45.833 0.00 0.00 44.65 2.87
78 79 3.711704 GGGTGTCCCAAAGATATGAGAGA 59.288 47.826 0.00 0.00 44.65 3.10
79 80 4.078639 GGGTGTCCCAAAGATATGAGAG 57.921 50.000 0.00 0.00 44.65 3.20
92 93 1.698506 TTGTTGTTCATGGGTGTCCC 58.301 50.000 0.00 0.00 45.71 4.46
93 94 4.079253 ACTATTGTTGTTCATGGGTGTCC 58.921 43.478 0.00 0.00 0.00 4.02
94 95 7.120579 TGAATACTATTGTTGTTCATGGGTGTC 59.879 37.037 0.00 0.00 30.29 3.67
95 96 6.945435 TGAATACTATTGTTGTTCATGGGTGT 59.055 34.615 0.00 0.00 30.29 4.16
96 97 7.389803 TGAATACTATTGTTGTTCATGGGTG 57.610 36.000 0.00 0.00 30.29 4.61
97 98 7.416664 GCATGAATACTATTGTTGTTCATGGGT 60.417 37.037 27.93 9.57 45.48 4.51
98 99 6.919662 GCATGAATACTATTGTTGTTCATGGG 59.080 38.462 27.93 16.56 45.48 4.00
99 100 6.634035 CGCATGAATACTATTGTTGTTCATGG 59.366 38.462 27.93 20.83 45.48 3.66
100 101 7.188834 ACGCATGAATACTATTGTTGTTCATG 58.811 34.615 25.63 25.63 46.50 3.07
101 102 7.320443 ACGCATGAATACTATTGTTGTTCAT 57.680 32.000 0.00 11.80 39.07 2.57
102 103 6.735678 ACGCATGAATACTATTGTTGTTCA 57.264 33.333 0.00 9.11 35.57 3.18
103 104 8.126871 TCTACGCATGAATACTATTGTTGTTC 57.873 34.615 0.00 0.00 0.00 3.18
104 105 7.224753 CCTCTACGCATGAATACTATTGTTGTT 59.775 37.037 0.00 0.00 0.00 2.83
105 106 6.701841 CCTCTACGCATGAATACTATTGTTGT 59.298 38.462 0.00 0.00 0.00 3.32
106 107 6.923508 TCCTCTACGCATGAATACTATTGTTG 59.076 38.462 0.00 0.00 0.00 3.33
107 108 7.050970 TCCTCTACGCATGAATACTATTGTT 57.949 36.000 0.00 0.00 0.00 2.83
108 109 6.265649 ACTCCTCTACGCATGAATACTATTGT 59.734 38.462 0.00 0.00 0.00 2.71
109 110 6.584184 CACTCCTCTACGCATGAATACTATTG 59.416 42.308 0.00 0.00 0.00 1.90
110 111 6.294787 CCACTCCTCTACGCATGAATACTATT 60.295 42.308 0.00 0.00 0.00 1.73
111 112 5.184096 CCACTCCTCTACGCATGAATACTAT 59.816 44.000 0.00 0.00 0.00 2.12
112 113 4.519350 CCACTCCTCTACGCATGAATACTA 59.481 45.833 0.00 0.00 0.00 1.82
113 114 3.319405 CCACTCCTCTACGCATGAATACT 59.681 47.826 0.00 0.00 0.00 2.12
114 115 3.318275 TCCACTCCTCTACGCATGAATAC 59.682 47.826 0.00 0.00 0.00 1.89
115 116 3.562182 TCCACTCCTCTACGCATGAATA 58.438 45.455 0.00 0.00 0.00 1.75
116 117 2.363680 CTCCACTCCTCTACGCATGAAT 59.636 50.000 0.00 0.00 0.00 2.57
117 118 1.751351 CTCCACTCCTCTACGCATGAA 59.249 52.381 0.00 0.00 0.00 2.57
118 119 1.393603 CTCCACTCCTCTACGCATGA 58.606 55.000 0.00 0.00 0.00 3.07
119 120 0.249238 GCTCCACTCCTCTACGCATG 60.249 60.000 0.00 0.00 0.00 4.06
120 121 0.684479 TGCTCCACTCCTCTACGCAT 60.684 55.000 0.00 0.00 0.00 4.73
121 122 1.304134 TGCTCCACTCCTCTACGCA 60.304 57.895 0.00 0.00 0.00 5.24
122 123 1.139947 GTGCTCCACTCCTCTACGC 59.860 63.158 0.00 0.00 0.00 4.42
123 124 1.944024 CTAGTGCTCCACTCCTCTACG 59.056 57.143 0.48 0.00 41.21 3.51
124 125 3.007473 ACTAGTGCTCCACTCCTCTAC 57.993 52.381 0.48 0.00 41.21 2.59
125 126 3.357203 CAACTAGTGCTCCACTCCTCTA 58.643 50.000 0.00 0.00 41.21 2.43
126 127 2.175202 CAACTAGTGCTCCACTCCTCT 58.825 52.381 0.00 0.00 41.21 3.69
127 128 2.663826 CAACTAGTGCTCCACTCCTC 57.336 55.000 0.00 0.00 41.21 3.71
143 144 4.219033 CACTAAAACATTGTCGAGGCAAC 58.781 43.478 0.00 0.00 0.00 4.17
144 145 3.304391 GCACTAAAACATTGTCGAGGCAA 60.304 43.478 0.00 0.00 0.00 4.52
145 146 2.225491 GCACTAAAACATTGTCGAGGCA 59.775 45.455 0.00 0.00 0.00 4.75
146 147 2.225491 TGCACTAAAACATTGTCGAGGC 59.775 45.455 0.00 0.00 0.00 4.70
147 148 3.498397 ACTGCACTAAAACATTGTCGAGG 59.502 43.478 0.00 0.00 0.00 4.63
148 149 4.732285 ACTGCACTAAAACATTGTCGAG 57.268 40.909 0.00 0.00 0.00 4.04
149 150 5.294356 AGTACTGCACTAAAACATTGTCGA 58.706 37.500 0.00 0.00 34.98 4.20
150 151 5.389516 GGAGTACTGCACTAAAACATTGTCG 60.390 44.000 9.84 0.00 37.72 4.35
151 152 5.106673 GGGAGTACTGCACTAAAACATTGTC 60.107 44.000 16.81 0.00 37.72 3.18
152 153 4.760204 GGGAGTACTGCACTAAAACATTGT 59.240 41.667 16.81 0.00 37.72 2.71
153 154 4.156008 GGGGAGTACTGCACTAAAACATTG 59.844 45.833 16.81 0.00 37.72 2.82
154 155 4.202524 TGGGGAGTACTGCACTAAAACATT 60.203 41.667 18.19 0.00 37.72 2.71
155 156 3.329520 TGGGGAGTACTGCACTAAAACAT 59.670 43.478 18.19 0.00 37.72 2.71
156 157 2.706723 TGGGGAGTACTGCACTAAAACA 59.293 45.455 18.19 0.00 37.72 2.83
157 158 3.412237 TGGGGAGTACTGCACTAAAAC 57.588 47.619 18.19 0.00 37.72 2.43
158 159 4.288626 AGAATGGGGAGTACTGCACTAAAA 59.711 41.667 18.19 0.00 37.72 1.52
159 160 3.844211 AGAATGGGGAGTACTGCACTAAA 59.156 43.478 18.19 0.00 37.72 1.85
160 161 3.197766 CAGAATGGGGAGTACTGCACTAA 59.802 47.826 18.19 0.00 37.72 2.24
161 162 2.766263 CAGAATGGGGAGTACTGCACTA 59.234 50.000 18.19 4.78 37.72 2.74
162 163 1.556911 CAGAATGGGGAGTACTGCACT 59.443 52.381 18.19 0.00 41.47 4.40
163 164 1.279271 ACAGAATGGGGAGTACTGCAC 59.721 52.381 16.81 13.68 43.62 4.57
164 165 1.656587 ACAGAATGGGGAGTACTGCA 58.343 50.000 16.81 0.00 43.62 4.41
165 166 2.359900 CAACAGAATGGGGAGTACTGC 58.640 52.381 5.70 5.70 43.62 4.40
166 167 2.571653 TCCAACAGAATGGGGAGTACTG 59.428 50.000 0.00 0.00 43.62 2.74
167 168 2.572104 GTCCAACAGAATGGGGAGTACT 59.428 50.000 0.00 0.00 43.00 2.73
168 169 2.572104 AGTCCAACAGAATGGGGAGTAC 59.428 50.000 0.00 0.00 42.95 2.73
169 170 2.838202 GAGTCCAACAGAATGGGGAGTA 59.162 50.000 0.00 0.00 44.19 2.59
170 171 1.630878 GAGTCCAACAGAATGGGGAGT 59.369 52.381 0.00 0.00 45.98 3.85
171 172 1.065126 GGAGTCCAACAGAATGGGGAG 60.065 57.143 3.60 0.00 43.00 4.30
172 173 0.991920 GGAGTCCAACAGAATGGGGA 59.008 55.000 3.60 0.00 43.62 4.81
173 174 0.392998 CGGAGTCCAACAGAATGGGG 60.393 60.000 10.49 0.00 43.62 4.96
174 175 0.392998 CCGGAGTCCAACAGAATGGG 60.393 60.000 10.49 0.00 43.62 4.00
175 176 0.324943 ACCGGAGTCCAACAGAATGG 59.675 55.000 9.46 1.78 43.62 3.16
176 177 2.028476 TGTACCGGAGTCCAACAGAATG 60.028 50.000 9.46 0.00 46.00 2.67
177 178 2.253610 TGTACCGGAGTCCAACAGAAT 58.746 47.619 9.46 0.00 0.00 2.40
178 179 1.707106 TGTACCGGAGTCCAACAGAA 58.293 50.000 9.46 0.00 0.00 3.02
179 180 1.707106 TTGTACCGGAGTCCAACAGA 58.293 50.000 9.46 0.00 0.00 3.41
180 181 2.536761 TTTGTACCGGAGTCCAACAG 57.463 50.000 9.46 0.00 0.00 3.16
181 182 2.635915 AGATTTGTACCGGAGTCCAACA 59.364 45.455 9.46 7.42 0.00 3.33
182 183 3.000727 CAGATTTGTACCGGAGTCCAAC 58.999 50.000 9.46 4.70 0.00 3.77
183 184 2.901192 TCAGATTTGTACCGGAGTCCAA 59.099 45.455 9.46 1.74 0.00 3.53
184 185 2.531771 TCAGATTTGTACCGGAGTCCA 58.468 47.619 9.46 0.00 0.00 4.02
185 186 3.056035 ACTTCAGATTTGTACCGGAGTCC 60.056 47.826 9.46 0.00 0.00 3.85
186 187 4.189639 ACTTCAGATTTGTACCGGAGTC 57.810 45.455 9.46 0.00 0.00 3.36
187 188 4.159879 CCTACTTCAGATTTGTACCGGAGT 59.840 45.833 9.46 0.00 0.00 3.85
188 189 4.401519 TCCTACTTCAGATTTGTACCGGAG 59.598 45.833 9.46 0.00 0.00 4.63
189 190 4.346730 TCCTACTTCAGATTTGTACCGGA 58.653 43.478 9.46 0.00 0.00 5.14
190 191 4.730949 TCCTACTTCAGATTTGTACCGG 57.269 45.455 0.00 0.00 0.00 5.28
191 192 5.661458 ACATCCTACTTCAGATTTGTACCG 58.339 41.667 0.00 0.00 0.00 4.02
192 193 7.606456 TCAAACATCCTACTTCAGATTTGTACC 59.394 37.037 0.00 0.00 0.00 3.34
193 194 8.443937 GTCAAACATCCTACTTCAGATTTGTAC 58.556 37.037 0.00 0.00 0.00 2.90
194 195 7.606456 GGTCAAACATCCTACTTCAGATTTGTA 59.394 37.037 0.00 0.00 0.00 2.41
195 196 6.431234 GGTCAAACATCCTACTTCAGATTTGT 59.569 38.462 0.00 0.00 0.00 2.83
196 197 6.430925 TGGTCAAACATCCTACTTCAGATTTG 59.569 38.462 0.00 0.00 0.00 2.32
197 198 6.542821 TGGTCAAACATCCTACTTCAGATTT 58.457 36.000 0.00 0.00 0.00 2.17
198 199 6.126863 TGGTCAAACATCCTACTTCAGATT 57.873 37.500 0.00 0.00 0.00 2.40
199 200 5.762179 TGGTCAAACATCCTACTTCAGAT 57.238 39.130 0.00 0.00 0.00 2.90
200 201 5.491070 CATGGTCAAACATCCTACTTCAGA 58.509 41.667 0.00 0.00 0.00 3.27
201 202 4.637534 CCATGGTCAAACATCCTACTTCAG 59.362 45.833 2.57 0.00 0.00 3.02
202 203 4.288366 TCCATGGTCAAACATCCTACTTCA 59.712 41.667 12.58 0.00 0.00 3.02
203 204 4.843728 TCCATGGTCAAACATCCTACTTC 58.156 43.478 12.58 0.00 0.00 3.01
204 205 4.927267 TCCATGGTCAAACATCCTACTT 57.073 40.909 12.58 0.00 0.00 2.24
205 206 4.927267 TTCCATGGTCAAACATCCTACT 57.073 40.909 12.58 0.00 0.00 2.57
206 207 5.975693 TTTTCCATGGTCAAACATCCTAC 57.024 39.130 12.58 0.00 0.00 3.18
207 208 5.356751 CGATTTTCCATGGTCAAACATCCTA 59.643 40.000 12.58 0.00 0.00 2.94
208 209 4.158394 CGATTTTCCATGGTCAAACATCCT 59.842 41.667 12.58 0.00 0.00 3.24
209 210 4.157656 TCGATTTTCCATGGTCAAACATCC 59.842 41.667 12.58 3.09 0.00 3.51
210 211 5.309323 TCGATTTTCCATGGTCAAACATC 57.691 39.130 12.58 6.22 0.00 3.06
211 212 5.720371 TTCGATTTTCCATGGTCAAACAT 57.280 34.783 12.58 0.00 0.00 2.71
212 213 5.010516 ACATTCGATTTTCCATGGTCAAACA 59.989 36.000 12.58 0.00 0.00 2.83
213 214 5.469479 ACATTCGATTTTCCATGGTCAAAC 58.531 37.500 12.58 3.94 0.00 2.93
214 215 5.720371 ACATTCGATTTTCCATGGTCAAA 57.280 34.783 12.58 12.49 0.00 2.69
215 216 5.720371 AACATTCGATTTTCCATGGTCAA 57.280 34.783 12.58 6.22 0.00 3.18
216 217 5.720371 AAACATTCGATTTTCCATGGTCA 57.280 34.783 12.58 0.00 0.00 4.02
217 218 6.155827 TGAAAACATTCGATTTTCCATGGTC 58.844 36.000 12.58 0.22 42.77 4.02
218 219 6.095432 TGAAAACATTCGATTTTCCATGGT 57.905 33.333 12.58 0.00 42.77 3.55
219 220 7.457868 CAATGAAAACATTCGATTTTCCATGG 58.542 34.615 16.24 4.97 42.77 3.66
220 221 6.957077 GCAATGAAAACATTCGATTTTCCATG 59.043 34.615 16.24 15.18 42.77 3.66
221 222 6.649973 TGCAATGAAAACATTCGATTTTCCAT 59.350 30.769 16.24 9.49 42.77 3.41
222 223 5.987953 TGCAATGAAAACATTCGATTTTCCA 59.012 32.000 16.24 7.42 42.77 3.53
223 224 6.464895 TGCAATGAAAACATTCGATTTTCC 57.535 33.333 16.24 5.49 42.77 3.13
224 225 8.938047 ATTTGCAATGAAAACATTCGATTTTC 57.062 26.923 13.37 13.37 43.41 2.29
226 227 9.810231 GTAATTTGCAATGAAAACATTCGATTT 57.190 25.926 0.00 0.00 0.00 2.17
227 228 8.161610 CGTAATTTGCAATGAAAACATTCGATT 58.838 29.630 0.00 0.00 0.00 3.34
228 229 7.328249 ACGTAATTTGCAATGAAAACATTCGAT 59.672 29.630 0.00 0.00 0.00 3.59
229 230 6.638873 ACGTAATTTGCAATGAAAACATTCGA 59.361 30.769 0.00 0.00 0.00 3.71
230 231 6.806246 ACGTAATTTGCAATGAAAACATTCG 58.194 32.000 0.00 4.44 0.00 3.34
231 232 8.487176 AGAACGTAATTTGCAATGAAAACATTC 58.513 29.630 0.00 0.00 0.00 2.67
232 233 8.364129 AGAACGTAATTTGCAATGAAAACATT 57.636 26.923 0.00 0.00 0.00 2.71
233 234 7.116233 GGAGAACGTAATTTGCAATGAAAACAT 59.884 33.333 0.00 0.00 0.00 2.71
234 235 6.419413 GGAGAACGTAATTTGCAATGAAAACA 59.581 34.615 0.00 0.00 0.00 2.83
235 236 6.398517 CGGAGAACGTAATTTGCAATGAAAAC 60.399 38.462 0.00 0.00 37.93 2.43
236 237 5.627367 CGGAGAACGTAATTTGCAATGAAAA 59.373 36.000 0.00 0.00 37.93 2.29
237 238 5.049336 TCGGAGAACGTAATTTGCAATGAAA 60.049 36.000 0.00 0.00 44.69 2.69
238 239 4.452795 TCGGAGAACGTAATTTGCAATGAA 59.547 37.500 0.00 0.00 44.69 2.57
239 240 3.997681 TCGGAGAACGTAATTTGCAATGA 59.002 39.130 0.00 0.00 44.69 2.57
240 241 4.334443 CTCGGAGAACGTAATTTGCAATG 58.666 43.478 0.00 0.00 44.69 2.82
241 242 3.374058 CCTCGGAGAACGTAATTTGCAAT 59.626 43.478 6.58 0.00 44.69 3.56
242 243 2.739913 CCTCGGAGAACGTAATTTGCAA 59.260 45.455 6.58 0.00 44.69 4.08
243 244 2.028839 TCCTCGGAGAACGTAATTTGCA 60.029 45.455 6.58 0.00 44.69 4.08
244 245 2.613691 TCCTCGGAGAACGTAATTTGC 58.386 47.619 6.58 0.00 44.69 3.68
245 246 4.181578 ACATCCTCGGAGAACGTAATTTG 58.818 43.478 6.58 0.00 44.69 2.32
246 247 4.081862 TGACATCCTCGGAGAACGTAATTT 60.082 41.667 6.58 0.00 44.69 1.82
247 248 3.446161 TGACATCCTCGGAGAACGTAATT 59.554 43.478 6.58 0.00 44.69 1.40
248 249 3.021695 TGACATCCTCGGAGAACGTAAT 58.978 45.455 6.58 0.00 44.69 1.89
249 250 2.439409 TGACATCCTCGGAGAACGTAA 58.561 47.619 6.58 0.00 44.69 3.18
250 251 2.118313 TGACATCCTCGGAGAACGTA 57.882 50.000 6.58 0.00 44.69 3.57
251 252 1.202582 CTTGACATCCTCGGAGAACGT 59.797 52.381 6.58 0.00 44.69 3.99
252 253 1.202582 ACTTGACATCCTCGGAGAACG 59.797 52.381 6.58 0.00 46.11 3.95
253 254 3.320673 AACTTGACATCCTCGGAGAAC 57.679 47.619 6.58 0.00 34.09 3.01
254 255 4.527038 ACTAAACTTGACATCCTCGGAGAA 59.473 41.667 6.58 0.00 34.09 2.87
255 256 4.087182 ACTAAACTTGACATCCTCGGAGA 58.913 43.478 6.58 0.00 0.00 3.71
256 257 4.457834 ACTAAACTTGACATCCTCGGAG 57.542 45.455 0.00 0.00 0.00 4.63
257 258 4.562757 CCAACTAAACTTGACATCCTCGGA 60.563 45.833 0.00 0.00 0.00 4.55
258 259 3.684788 CCAACTAAACTTGACATCCTCGG 59.315 47.826 0.00 0.00 0.00 4.63
259 260 3.125316 GCCAACTAAACTTGACATCCTCG 59.875 47.826 0.00 0.00 0.00 4.63
260 261 3.125316 CGCCAACTAAACTTGACATCCTC 59.875 47.826 0.00 0.00 0.00 3.71
261 262 3.074412 CGCCAACTAAACTTGACATCCT 58.926 45.455 0.00 0.00 0.00 3.24
262 263 3.071479 TCGCCAACTAAACTTGACATCC 58.929 45.455 0.00 0.00 0.00 3.51
263 264 3.746492 ACTCGCCAACTAAACTTGACATC 59.254 43.478 0.00 0.00 0.00 3.06
264 265 3.740115 ACTCGCCAACTAAACTTGACAT 58.260 40.909 0.00 0.00 0.00 3.06
265 266 3.188159 ACTCGCCAACTAAACTTGACA 57.812 42.857 0.00 0.00 0.00 3.58
266 267 4.092968 CCATACTCGCCAACTAAACTTGAC 59.907 45.833 0.00 0.00 0.00 3.18
267 268 4.250464 CCATACTCGCCAACTAAACTTGA 58.750 43.478 0.00 0.00 0.00 3.02
268 269 3.181510 GCCATACTCGCCAACTAAACTTG 60.182 47.826 0.00 0.00 0.00 3.16
269 270 3.007635 GCCATACTCGCCAACTAAACTT 58.992 45.455 0.00 0.00 0.00 2.66
270 271 2.027561 TGCCATACTCGCCAACTAAACT 60.028 45.455 0.00 0.00 0.00 2.66
271 272 2.352388 TGCCATACTCGCCAACTAAAC 58.648 47.619 0.00 0.00 0.00 2.01
272 273 2.772077 TGCCATACTCGCCAACTAAA 57.228 45.000 0.00 0.00 0.00 1.85
273 274 2.772077 TTGCCATACTCGCCAACTAA 57.228 45.000 0.00 0.00 0.00 2.24
274 275 2.772077 TTTGCCATACTCGCCAACTA 57.228 45.000 0.00 0.00 0.00 2.24
275 276 2.017049 GATTTGCCATACTCGCCAACT 58.983 47.619 0.00 0.00 0.00 3.16
276 277 1.065551 GGATTTGCCATACTCGCCAAC 59.934 52.381 0.00 0.00 36.34 3.77
277 278 1.388547 GGATTTGCCATACTCGCCAA 58.611 50.000 0.00 0.00 36.34 4.52
278 279 0.813610 CGGATTTGCCATACTCGCCA 60.814 55.000 0.00 0.00 35.94 5.69
279 280 1.941812 CGGATTTGCCATACTCGCC 59.058 57.895 0.00 0.00 35.94 5.54
280 281 1.279840 GCGGATTTGCCATACTCGC 59.720 57.895 0.00 0.00 35.94 5.03
289 290 3.782889 AATAAACTGAGGCGGATTTGC 57.217 42.857 0.00 0.00 0.00 3.68
290 291 5.286082 CGAAAAATAAACTGAGGCGGATTTG 59.714 40.000 0.00 0.00 0.00 2.32
291 292 5.048294 ACGAAAAATAAACTGAGGCGGATTT 60.048 36.000 0.00 0.00 0.00 2.17
292 293 4.457949 ACGAAAAATAAACTGAGGCGGATT 59.542 37.500 0.00 0.00 0.00 3.01
293 294 4.007659 ACGAAAAATAAACTGAGGCGGAT 58.992 39.130 0.00 0.00 0.00 4.18
294 295 3.187637 CACGAAAAATAAACTGAGGCGGA 59.812 43.478 0.00 0.00 0.00 5.54
295 296 3.187637 TCACGAAAAATAAACTGAGGCGG 59.812 43.478 0.00 0.00 0.00 6.13
296 297 4.151689 TCTCACGAAAAATAAACTGAGGCG 59.848 41.667 0.00 0.00 0.00 5.52
297 298 5.607119 TCTCACGAAAAATAAACTGAGGC 57.393 39.130 0.00 0.00 0.00 4.70
310 311 4.124238 AGGACGACAATTTTCTCACGAAA 58.876 39.130 0.00 0.00 37.36 3.46
311 312 3.724374 AGGACGACAATTTTCTCACGAA 58.276 40.909 0.00 0.00 0.00 3.85
312 313 3.380479 AGGACGACAATTTTCTCACGA 57.620 42.857 0.00 0.00 0.00 4.35
313 314 3.799035 CAAGGACGACAATTTTCTCACG 58.201 45.455 0.00 0.00 0.00 4.35
314 315 3.003275 TGCAAGGACGACAATTTTCTCAC 59.997 43.478 0.00 0.00 0.00 3.51
315 316 3.210227 TGCAAGGACGACAATTTTCTCA 58.790 40.909 0.00 0.00 0.00 3.27
316 317 3.896648 TGCAAGGACGACAATTTTCTC 57.103 42.857 0.00 0.00 0.00 2.87
317 318 4.097892 AGTTTGCAAGGACGACAATTTTCT 59.902 37.500 0.00 0.00 0.00 2.52
318 319 4.359706 AGTTTGCAAGGACGACAATTTTC 58.640 39.130 0.00 0.00 0.00 2.29
319 320 4.385358 AGTTTGCAAGGACGACAATTTT 57.615 36.364 0.00 0.00 0.00 1.82
320 321 5.508200 TTAGTTTGCAAGGACGACAATTT 57.492 34.783 0.00 0.00 0.00 1.82
321 322 5.508200 TTTAGTTTGCAAGGACGACAATT 57.492 34.783 0.00 0.00 0.00 2.32
322 323 5.705609 ATTTAGTTTGCAAGGACGACAAT 57.294 34.783 0.00 0.00 0.00 2.71
323 324 5.508200 AATTTAGTTTGCAAGGACGACAA 57.492 34.783 0.00 0.00 0.00 3.18
324 325 5.277825 CAAATTTAGTTTGCAAGGACGACA 58.722 37.500 0.00 0.00 40.62 4.35
325 326 5.806089 CAAATTTAGTTTGCAAGGACGAC 57.194 39.130 0.00 0.00 40.62 4.34
336 337 4.104776 CGCGATGATGGCAAATTTAGTTT 58.895 39.130 0.00 0.00 0.00 2.66
337 338 3.694734 CGCGATGATGGCAAATTTAGTT 58.305 40.909 0.00 0.00 0.00 2.24
338 339 2.541588 GCGCGATGATGGCAAATTTAGT 60.542 45.455 12.10 0.00 0.00 2.24
339 340 2.046313 GCGCGATGATGGCAAATTTAG 58.954 47.619 12.10 0.00 0.00 1.85
340 341 1.268999 GGCGCGATGATGGCAAATTTA 60.269 47.619 12.10 0.00 0.00 1.40
341 342 0.528249 GGCGCGATGATGGCAAATTT 60.528 50.000 12.10 0.00 0.00 1.82
342 343 1.066257 GGCGCGATGATGGCAAATT 59.934 52.632 12.10 0.00 0.00 1.82
343 344 1.665264 TTGGCGCGATGATGGCAAAT 61.665 50.000 12.10 0.00 46.03 2.32
344 345 2.338785 TTGGCGCGATGATGGCAAA 61.339 52.632 12.10 0.00 46.03 3.68
345 346 2.749441 TTGGCGCGATGATGGCAA 60.749 55.556 12.10 0.00 46.71 4.52
346 347 3.507924 GTTGGCGCGATGATGGCA 61.508 61.111 12.10 0.00 39.06 4.92
347 348 1.506309 TATGTTGGCGCGATGATGGC 61.506 55.000 12.10 0.00 0.00 4.40
348 349 0.943673 TTATGTTGGCGCGATGATGG 59.056 50.000 12.10 0.00 0.00 3.51
349 350 2.753989 TTTATGTTGGCGCGATGATG 57.246 45.000 12.10 0.00 0.00 3.07
350 351 3.988379 AATTTATGTTGGCGCGATGAT 57.012 38.095 12.10 0.00 0.00 2.45
351 352 3.488384 GGAAATTTATGTTGGCGCGATGA 60.488 43.478 12.10 0.00 0.00 2.92
352 353 2.788786 GGAAATTTATGTTGGCGCGATG 59.211 45.455 12.10 0.00 0.00 3.84
353 354 2.425312 TGGAAATTTATGTTGGCGCGAT 59.575 40.909 12.10 0.00 0.00 4.58
354 355 1.813178 TGGAAATTTATGTTGGCGCGA 59.187 42.857 12.10 0.00 0.00 5.87
355 356 2.270275 TGGAAATTTATGTTGGCGCG 57.730 45.000 0.00 0.00 0.00 6.86
356 357 3.779759 TGATGGAAATTTATGTTGGCGC 58.220 40.909 0.00 0.00 0.00 6.53
357 358 7.305935 CGTTATTGATGGAAATTTATGTTGGCG 60.306 37.037 0.00 0.00 0.00 5.69
358 359 7.491048 ACGTTATTGATGGAAATTTATGTTGGC 59.509 33.333 0.00 0.00 0.00 4.52
359 360 8.925161 ACGTTATTGATGGAAATTTATGTTGG 57.075 30.769 0.00 0.00 0.00 3.77
372 373 8.745837 GCATGAAGAATTTAACGTTATTGATGG 58.254 33.333 9.18 0.00 27.26 3.51
373 374 9.507280 AGCATGAAGAATTTAACGTTATTGATG 57.493 29.630 9.18 10.57 28.89 3.07
386 387 9.985730 TGTCAGATTTTTAAGCATGAAGAATTT 57.014 25.926 0.00 0.00 0.00 1.82
387 388 9.635520 CTGTCAGATTTTTAAGCATGAAGAATT 57.364 29.630 0.00 0.00 0.00 2.17
388 389 8.800332 ACTGTCAGATTTTTAAGCATGAAGAAT 58.200 29.630 6.91 0.00 0.00 2.40
389 390 8.077991 CACTGTCAGATTTTTAAGCATGAAGAA 58.922 33.333 6.91 0.00 0.00 2.52
390 391 7.229306 ACACTGTCAGATTTTTAAGCATGAAGA 59.771 33.333 6.91 0.00 0.00 2.87
391 392 7.365741 ACACTGTCAGATTTTTAAGCATGAAG 58.634 34.615 6.91 0.00 0.00 3.02
392 393 7.275888 ACACTGTCAGATTTTTAAGCATGAA 57.724 32.000 6.91 0.00 0.00 2.57
393 394 6.882610 ACACTGTCAGATTTTTAAGCATGA 57.117 33.333 6.91 0.00 0.00 3.07
394 395 7.935338 AAACACTGTCAGATTTTTAAGCATG 57.065 32.000 6.91 0.00 0.00 4.06
395 396 7.379529 CGAAAACACTGTCAGATTTTTAAGCAT 59.620 33.333 6.91 0.00 0.00 3.79
396 397 6.690957 CGAAAACACTGTCAGATTTTTAAGCA 59.309 34.615 6.91 0.00 0.00 3.91
397 398 6.691388 ACGAAAACACTGTCAGATTTTTAAGC 59.309 34.615 6.91 1.40 0.00 3.09
398 399 8.614994 AACGAAAACACTGTCAGATTTTTAAG 57.385 30.769 6.91 10.50 0.00 1.85
399 400 8.973835 AAACGAAAACACTGTCAGATTTTTAA 57.026 26.923 6.91 0.00 0.00 1.52
400 401 8.455682 AGAAACGAAAACACTGTCAGATTTTTA 58.544 29.630 6.91 0.00 0.00 1.52
401 402 7.312899 AGAAACGAAAACACTGTCAGATTTTT 58.687 30.769 6.91 10.76 0.00 1.94
402 403 6.852664 AGAAACGAAAACACTGTCAGATTTT 58.147 32.000 6.91 12.22 0.00 1.82
403 404 6.436843 AGAAACGAAAACACTGTCAGATTT 57.563 33.333 6.91 4.06 0.00 2.17
404 405 6.436843 AAGAAACGAAAACACTGTCAGATT 57.563 33.333 6.91 0.00 0.00 2.40
405 406 6.436843 AAAGAAACGAAAACACTGTCAGAT 57.563 33.333 6.91 0.00 0.00 2.90
406 407 5.873179 AAAGAAACGAAAACACTGTCAGA 57.127 34.783 6.91 0.00 0.00 3.27
407 408 6.927933 AAAAAGAAACGAAAACACTGTCAG 57.072 33.333 0.00 0.00 0.00 3.51
408 409 7.586747 AGTAAAAAGAAACGAAAACACTGTCA 58.413 30.769 0.00 0.00 0.00 3.58
409 410 8.443898 AAGTAAAAAGAAACGAAAACACTGTC 57.556 30.769 0.00 0.00 0.00 3.51
410 411 8.696175 CAAAGTAAAAAGAAACGAAAACACTGT 58.304 29.630 0.00 0.00 0.00 3.55
411 412 8.696175 ACAAAGTAAAAAGAAACGAAAACACTG 58.304 29.630 0.00 0.00 0.00 3.66
412 413 8.696175 CACAAAGTAAAAAGAAACGAAAACACT 58.304 29.630 0.00 0.00 0.00 3.55
413 414 8.481641 ACACAAAGTAAAAAGAAACGAAAACAC 58.518 29.630 0.00 0.00 0.00 3.32
414 415 8.576936 ACACAAAGTAAAAAGAAACGAAAACA 57.423 26.923 0.00 0.00 0.00 2.83
420 421 8.898792 GCCTAATACACAAAGTAAAAAGAAACG 58.101 33.333 0.00 0.00 36.05 3.60
421 422 9.961265 AGCCTAATACACAAAGTAAAAAGAAAC 57.039 29.630 0.00 0.00 36.05 2.78
423 424 9.959749 CAAGCCTAATACACAAAGTAAAAAGAA 57.040 29.630 0.00 0.00 36.05 2.52
424 425 9.127277 ACAAGCCTAATACACAAAGTAAAAAGA 57.873 29.630 0.00 0.00 36.05 2.52
425 426 9.394477 GACAAGCCTAATACACAAAGTAAAAAG 57.606 33.333 0.00 0.00 36.05 2.27
426 427 9.127277 AGACAAGCCTAATACACAAAGTAAAAA 57.873 29.630 0.00 0.00 36.05 1.94
427 428 8.564574 CAGACAAGCCTAATACACAAAGTAAAA 58.435 33.333 0.00 0.00 36.05 1.52
428 429 7.934665 TCAGACAAGCCTAATACACAAAGTAAA 59.065 33.333 0.00 0.00 36.05 2.01
429 430 7.446769 TCAGACAAGCCTAATACACAAAGTAA 58.553 34.615 0.00 0.00 36.05 2.24
430 431 6.999950 TCAGACAAGCCTAATACACAAAGTA 58.000 36.000 0.00 0.00 37.06 2.24
431 432 5.865085 TCAGACAAGCCTAATACACAAAGT 58.135 37.500 0.00 0.00 0.00 2.66
432 433 6.428159 ACTTCAGACAAGCCTAATACACAAAG 59.572 38.462 0.00 0.00 0.00 2.77
433 434 6.296026 ACTTCAGACAAGCCTAATACACAAA 58.704 36.000 0.00 0.00 0.00 2.83
434 435 5.865085 ACTTCAGACAAGCCTAATACACAA 58.135 37.500 0.00 0.00 0.00 3.33
435 436 5.011635 TGACTTCAGACAAGCCTAATACACA 59.988 40.000 0.00 0.00 0.00 3.72
436 437 5.479306 TGACTTCAGACAAGCCTAATACAC 58.521 41.667 0.00 0.00 0.00 2.90
437 438 5.738619 TGACTTCAGACAAGCCTAATACA 57.261 39.130 0.00 0.00 0.00 2.29
438 439 6.651225 AGTTTGACTTCAGACAAGCCTAATAC 59.349 38.462 3.03 0.00 33.85 1.89
439 440 6.769512 AGTTTGACTTCAGACAAGCCTAATA 58.230 36.000 3.03 0.00 33.85 0.98
440 441 5.625150 AGTTTGACTTCAGACAAGCCTAAT 58.375 37.500 3.03 0.00 33.85 1.73
441 442 5.036117 AGTTTGACTTCAGACAAGCCTAA 57.964 39.130 3.03 0.00 33.85 2.69
442 443 4.689612 AGTTTGACTTCAGACAAGCCTA 57.310 40.909 3.03 0.00 33.85 3.93
443 444 3.567478 AGTTTGACTTCAGACAAGCCT 57.433 42.857 3.03 0.00 33.85 4.58
471 472 5.480422 GGAGGGAGTACAAATTTGGTCAAAT 59.520 40.000 21.74 3.34 42.35 2.32
472 473 4.830600 GGAGGGAGTACAAATTTGGTCAAA 59.169 41.667 21.74 0.00 34.46 2.69
473 474 4.403734 GGAGGGAGTACAAATTTGGTCAA 58.596 43.478 21.74 2.29 0.00 3.18
474 475 3.245122 GGGAGGGAGTACAAATTTGGTCA 60.245 47.826 21.74 4.39 0.00 4.02
475 476 3.010250 AGGGAGGGAGTACAAATTTGGTC 59.990 47.826 21.74 14.25 0.00 4.02
476 477 2.993863 AGGGAGGGAGTACAAATTTGGT 59.006 45.455 21.74 10.18 0.00 3.67
477 478 3.739401 AGGGAGGGAGTACAAATTTGG 57.261 47.619 21.74 4.79 0.00 3.28
478 479 6.001449 TGATAGGGAGGGAGTACAAATTTG 57.999 41.667 16.67 16.67 0.00 2.32
479 480 6.652205 TTGATAGGGAGGGAGTACAAATTT 57.348 37.500 0.00 0.00 0.00 1.82
480 481 6.652205 TTTGATAGGGAGGGAGTACAAATT 57.348 37.500 0.00 0.00 0.00 1.82
481 482 6.652205 TTTTGATAGGGAGGGAGTACAAAT 57.348 37.500 0.00 0.00 0.00 2.32
482 483 6.652205 ATTTTGATAGGGAGGGAGTACAAA 57.348 37.500 0.00 0.00 0.00 2.83
483 484 7.947782 ATATTTTGATAGGGAGGGAGTACAA 57.052 36.000 0.00 0.00 0.00 2.41
484 485 9.101325 CTTATATTTTGATAGGGAGGGAGTACA 57.899 37.037 0.00 0.00 0.00 2.90
485 486 8.541234 CCTTATATTTTGATAGGGAGGGAGTAC 58.459 40.741 0.00 0.00 31.63 2.73
486 487 7.182206 GCCTTATATTTTGATAGGGAGGGAGTA 59.818 40.741 0.00 0.00 31.63 2.59
487 488 6.012421 GCCTTATATTTTGATAGGGAGGGAGT 60.012 42.308 0.00 0.00 31.63 3.85
488 489 6.418946 GCCTTATATTTTGATAGGGAGGGAG 58.581 44.000 0.00 0.00 31.63 4.30
489 490 5.045869 CGCCTTATATTTTGATAGGGAGGGA 60.046 44.000 0.00 0.00 31.63 4.20
490 491 5.186198 CGCCTTATATTTTGATAGGGAGGG 58.814 45.833 0.00 0.00 31.63 4.30
491 492 5.805728 ACGCCTTATATTTTGATAGGGAGG 58.194 41.667 0.00 0.00 34.09 4.30
492 493 7.745620 AAACGCCTTATATTTTGATAGGGAG 57.254 36.000 0.00 0.00 35.37 4.30
493 494 8.528044 AAAAACGCCTTATATTTTGATAGGGA 57.472 30.769 0.00 0.00 31.63 4.20
587 588 9.439500 ACACTTGGAAATACGCTTTATACTAAA 57.561 29.630 0.00 0.00 0.00 1.85
588 589 9.439500 AACACTTGGAAATACGCTTTATACTAA 57.561 29.630 0.00 0.00 0.00 2.24
589 590 9.439500 AAACACTTGGAAATACGCTTTATACTA 57.561 29.630 0.00 0.00 0.00 1.82
590 591 7.916914 AACACTTGGAAATACGCTTTATACT 57.083 32.000 0.00 0.00 0.00 2.12
591 592 8.959734 AAAACACTTGGAAATACGCTTTATAC 57.040 30.769 0.00 0.00 0.00 1.47
595 596 8.789762 AGTATAAAACACTTGGAAATACGCTTT 58.210 29.630 0.00 0.00 0.00 3.51
596 597 8.331730 AGTATAAAACACTTGGAAATACGCTT 57.668 30.769 0.00 0.00 0.00 4.68
597 598 7.916914 AGTATAAAACACTTGGAAATACGCT 57.083 32.000 0.00 0.00 0.00 5.07
627 628 9.347934 CGGTGCAAACTTCACATATTAATTTTA 57.652 29.630 0.00 0.00 36.22 1.52
629 630 7.375053 ACGGTGCAAACTTCACATATTAATTT 58.625 30.769 0.00 0.00 36.22 1.82
630 631 6.919721 ACGGTGCAAACTTCACATATTAATT 58.080 32.000 0.00 0.00 36.22 1.40
795 799 9.900112 ATTTCTAATCCTACTAGGTAATGAGGT 57.100 33.333 1.83 0.00 36.53 3.85
977 987 0.165944 GCGAGTTGCACAGCGTATTT 59.834 50.000 0.00 0.00 45.45 1.40
1149 1160 2.100631 CCACGACCGGCAGATTGTC 61.101 63.158 0.00 0.00 0.00 3.18
1477 1491 2.746277 GTCGGTCATGGTGCCACC 60.746 66.667 7.01 7.01 39.22 4.61
1487 1501 2.567497 GGTTGGAGGACGTCGGTCA 61.567 63.158 9.92 4.39 45.28 4.02
1551 1565 0.672401 CGTGCCCGACCAAGTACAAT 60.672 55.000 0.00 0.00 35.63 2.71
1576 1590 2.743718 CTTGTGCTCTCCCGTGGT 59.256 61.111 0.00 0.00 0.00 4.16
1657 1671 4.776647 GATGTTGTTGCGGCCGGC 62.777 66.667 29.38 21.18 43.96 6.13
1737 1751 2.108157 TTGACAACGGCTCTGCGT 59.892 55.556 0.00 0.00 0.00 5.24
1780 1794 3.737172 GCAGCGCCCGTTGTGATT 61.737 61.111 2.29 0.00 0.00 2.57
2046 2070 0.791422 CGAGAACAGAGTCGAGACGT 59.209 55.000 0.00 0.00 38.50 4.34
2058 2082 1.518325 TACGGTTACGGTCGAGAACA 58.482 50.000 0.00 0.00 46.48 3.18
2099 2123 1.103803 GTCGTCCAGCTCCATCAGTA 58.896 55.000 0.00 0.00 0.00 2.74
2101 2125 1.226802 CGTCGTCCAGCTCCATCAG 60.227 63.158 0.00 0.00 0.00 2.90
2148 2172 2.409055 ATACACCCGCACGACGCTA 61.409 57.895 0.00 0.00 41.76 4.26
2212 2242 2.106684 TGTAGCACCCAACAATACCACA 59.893 45.455 0.00 0.00 0.00 4.17
2215 2245 3.192633 CCTTTGTAGCACCCAACAATACC 59.807 47.826 0.00 0.00 35.64 2.73
2216 2246 3.824443 ACCTTTGTAGCACCCAACAATAC 59.176 43.478 0.00 0.00 35.64 1.89
2258 2291 2.203877 ACCCGGCTTCACCTACCA 60.204 61.111 0.00 0.00 35.61 3.25
2346 2379 6.612306 GGATACAGACAAACCATGAAAACTC 58.388 40.000 0.00 0.00 0.00 3.01
2373 2406 2.283617 CGGACTTGAGAATCTCATTGCG 59.716 50.000 14.31 16.04 40.39 4.85
2467 2519 2.553028 GGAGTGGATTGATGTGGTGTGT 60.553 50.000 0.00 0.00 0.00 3.72
2548 2600 4.380382 CCGTAGTTTGCGTGTAAATTTTGG 59.620 41.667 0.00 0.00 0.00 3.28
2584 2636 5.079643 AGACCCAAGTGCATTGAGTTTAAT 58.920 37.500 9.56 0.00 41.83 1.40
2592 2644 4.218200 TCATGTTAAGACCCAAGTGCATTG 59.782 41.667 0.00 0.00 38.74 2.82
2620 2672 1.302431 CAAGTGTGCGATCCACCCA 60.302 57.895 10.60 0.00 44.01 4.51
2666 2718 4.452455 GGTCGTAGGAATGCATTAAGATGG 59.548 45.833 12.97 0.87 33.72 3.51
2753 2805 2.827921 GGCAGTTGGTTCTTTCCATGAT 59.172 45.455 0.00 0.00 37.33 2.45
2756 2808 2.380064 TGGCAGTTGGTTCTTTCCAT 57.620 45.000 0.00 0.00 37.33 3.41
2760 2812 3.706086 AGACAATTGGCAGTTGGTTCTTT 59.294 39.130 24.00 4.52 0.00 2.52
2770 2822 3.889815 TCCCTCATTAGACAATTGGCAG 58.110 45.455 15.18 0.88 0.00 4.85
2886 2938 1.147153 GTCTGGGCTATGCACCTCC 59.853 63.158 0.00 0.00 0.00 4.30
2921 2973 8.696410 AAAACGAAGAAATGTAGAGATCTCTC 57.304 34.615 28.38 19.08 40.93 3.20
2927 2979 8.752766 ACGATAAAAACGAAGAAATGTAGAGA 57.247 30.769 0.00 0.00 34.70 3.10
2985 3037 9.301153 GAAGAGAAAGAGAGATGATTGTAAGTC 57.699 37.037 0.00 0.00 0.00 3.01
2994 3046 7.171653 TGTAGACTGAAGAGAAAGAGAGATGA 58.828 38.462 0.00 0.00 0.00 2.92
3119 3171 1.876799 CCAGATCGAGAGCTCATACGT 59.123 52.381 17.77 9.09 0.00 3.57
3154 3209 1.352352 GTGGGGTGGAGATGGGATATG 59.648 57.143 0.00 0.00 0.00 1.78
3177 3232 1.683011 GGACATTGAGATGGTGGTGGG 60.683 57.143 0.00 0.00 37.60 4.61
3196 3251 8.207521 ACACCACTCAACATTTTTAAAATTGG 57.792 30.769 20.93 12.39 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.