Multiple sequence alignment - TraesCS7A01G100000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G100000 chr7A 100.000 2973 0 0 1 2973 61495090 61492118 0.000000e+00 5491.0
1 TraesCS7A01G100000 chr7A 97.227 2236 40 8 728 2957 109231410 109229191 0.000000e+00 3766.0
2 TraesCS7A01G100000 chr7A 95.753 730 28 3 1 729 726791382 726792109 0.000000e+00 1173.0
3 TraesCS7A01G100000 chr7A 95.622 731 28 4 1 729 113860561 113861289 0.000000e+00 1170.0
4 TraesCS7A01G100000 chr7A 100.000 611 0 0 3187 3797 61491904 61491294 0.000000e+00 1129.0
5 TraesCS7A01G100000 chr7A 97.879 613 9 2 3189 3797 109228963 109228351 0.000000e+00 1057.0
6 TraesCS7A01G100000 chr7A 89.728 331 25 5 3471 3796 473026508 473026834 7.590000e-112 414.0
7 TraesCS7A01G100000 chr7A 92.857 238 8 3 728 957 61786056 61785820 1.690000e-88 337.0
8 TraesCS7A01G100000 chr7A 92.973 185 12 1 3299 3482 473026272 473026456 6.250000e-68 268.0
9 TraesCS7A01G100000 chr7A 96.552 87 3 0 3216 3302 473026133 473026219 1.100000e-30 145.0
10 TraesCS7A01G100000 chr7D 97.406 1619 32 6 1354 2967 499627295 499625682 0.000000e+00 2748.0
11 TraesCS7A01G100000 chr4B 95.926 1620 49 13 1354 2967 642737155 642738763 0.000000e+00 2610.0
12 TraesCS7A01G100000 chr2B 95.355 1227 29 6 1354 2576 30335432 30334230 0.000000e+00 1925.0
13 TraesCS7A01G100000 chr2B 95.802 262 11 0 2559 2820 30334048 30333787 1.260000e-114 424.0
14 TraesCS7A01G100000 chr2B 96.622 148 3 2 2821 2967 30332723 30332577 1.050000e-60 244.0
15 TraesCS7A01G100000 chr2B 87.097 217 11 6 759 959 526417207 526417422 2.950000e-56 230.0
16 TraesCS7A01G100000 chr3B 89.536 1529 91 24 1354 2820 812459715 812461236 0.000000e+00 1873.0
17 TraesCS7A01G100000 chr3B 95.642 436 17 1 923 1358 644015122 644014689 0.000000e+00 699.0
18 TraesCS7A01G100000 chr3B 85.957 648 59 18 733 1358 309870574 309871211 0.000000e+00 664.0
19 TraesCS7A01G100000 chr3B 90.964 332 24 4 3471 3797 764808627 764808957 3.480000e-120 442.0
20 TraesCS7A01G100000 chr3B 94.595 185 9 1 3299 3482 764808391 764808575 6.210000e-73 285.0
21 TraesCS7A01G100000 chr3B 95.402 87 4 0 3216 3302 764808252 764808338 5.110000e-29 139.0
22 TraesCS7A01G100000 chr3A 96.022 729 26 3 1 728 147436272 147436998 0.000000e+00 1182.0
23 TraesCS7A01G100000 chr3A 95.885 729 27 3 1 728 710185963 710185237 0.000000e+00 1177.0
24 TraesCS7A01G100000 chr3A 95.616 730 29 3 1 729 46486585 46487312 0.000000e+00 1168.0
25 TraesCS7A01G100000 chr3A 95.610 729 27 5 1 728 37744222 37743498 0.000000e+00 1164.0
26 TraesCS7A01G100000 chr3A 92.319 690 40 7 2080 2757 734841169 734841857 0.000000e+00 968.0
27 TraesCS7A01G100000 chr3A 90.078 766 36 7 1354 2080 734885753 734886517 0.000000e+00 957.0
28 TraesCS7A01G100000 chr3A 92.029 690 42 7 2080 2757 734886553 734887241 0.000000e+00 957.0
29 TraesCS7A01G100000 chr3A 90.132 760 36 6 1360 2080 734840374 734841133 0.000000e+00 952.0
30 TraesCS7A01G100000 chr3A 97.826 46 1 0 2773 2818 734842093 734842138 3.140000e-11 80.5
31 TraesCS7A01G100000 chr3A 97.826 46 1 0 2773 2818 734887477 734887522 3.140000e-11 80.5
32 TraesCS7A01G100000 chr2A 95.753 730 27 4 1 729 582979555 582980281 0.000000e+00 1173.0
33 TraesCS7A01G100000 chr2A 95.868 726 27 3 4 728 634148060 634147337 0.000000e+00 1171.0
34 TraesCS7A01G100000 chr2A 92.857 238 8 3 728 957 612391208 612390972 1.690000e-88 337.0
35 TraesCS7A01G100000 chr5A 95.610 729 29 3 1 728 380694100 380693374 0.000000e+00 1166.0
36 TraesCS7A01G100000 chr5A 83.488 1187 103 55 1482 2589 623024433 623023261 0.000000e+00 1020.0
37 TraesCS7A01G100000 chr5A 87.937 315 12 9 723 1013 129994616 129994304 7.810000e-92 348.0
38 TraesCS7A01G100000 chr5A 93.333 105 6 1 728 832 416117622 416117725 1.830000e-33 154.0
39 TraesCS7A01G100000 chr3D 97.390 613 12 2 3189 3797 536915484 536914872 0.000000e+00 1040.0
40 TraesCS7A01G100000 chr3D 96.574 613 17 2 3189 3797 536913186 536912574 0.000000e+00 1013.0
41 TraesCS7A01G100000 chr3D 90.707 764 33 7 1354 2080 604685930 604686692 0.000000e+00 983.0
42 TraesCS7A01G100000 chr3D 94.654 636 29 3 727 1357 67533970 67534605 0.000000e+00 981.0
43 TraesCS7A01G100000 chr3D 88.918 758 62 13 2080 2820 604686728 604687480 0.000000e+00 915.0
44 TraesCS7A01G100000 chr3D 96.169 496 14 3 3306 3797 536898350 536897856 0.000000e+00 806.0
45 TraesCS7A01G100000 chr2D 94.969 636 26 3 728 1357 312028620 312029255 0.000000e+00 992.0
46 TraesCS7A01G100000 chr2D 91.406 128 10 1 2821 2947 476921951 476921824 1.400000e-39 174.0
47 TraesCS7A01G100000 chr6D 96.982 497 14 1 870 1366 454304979 454304484 0.000000e+00 833.0
48 TraesCS7A01G100000 chr6D 91.406 128 10 1 2821 2947 130277666 130277539 1.400000e-39 174.0
49 TraesCS7A01G100000 chr6D 91.406 128 10 1 2821 2947 367003398 367003271 1.400000e-39 174.0
50 TraesCS7A01G100000 chr7B 95.872 436 18 0 923 1358 40952718 40953153 0.000000e+00 706.0
51 TraesCS7A01G100000 chr7B 91.880 234 10 3 786 1013 78319512 78319282 6.120000e-83 318.0
52 TraesCS7A01G100000 chr5B 94.700 434 23 0 925 1358 290578141 290578574 0.000000e+00 675.0
53 TraesCS7A01G100000 chr5B 87.097 558 41 17 1500 2029 618284681 618284127 1.510000e-168 603.0
54 TraesCS7A01G100000 chr5B 88.514 444 41 6 2147 2589 618283955 618283521 2.600000e-146 529.0
55 TraesCS7A01G100000 chr5B 87.449 247 15 6 728 959 290577874 290578119 1.740000e-68 270.0
56 TraesCS7A01G100000 chr5B 95.270 148 5 2 2821 2967 649446029 649445883 2.280000e-57 233.0
57 TraesCS7A01G100000 chr1A 93.765 417 22 2 728 1142 467181369 467180955 1.160000e-174 623.0
58 TraesCS7A01G100000 chr1A 92.542 295 22 0 1056 1350 499445148 499444854 1.260000e-114 424.0
59 TraesCS7A01G100000 chr5D 86.332 578 47 19 1482 2029 498732189 498731614 5.430000e-168 601.0
60 TraesCS7A01G100000 chr5D 88.514 444 40 7 2147 2589 498731447 498731014 9.340000e-146 527.0
61 TraesCS7A01G100000 chr5D 86.614 254 17 9 716 959 416052727 416052481 8.090000e-67 265.0
62 TraesCS7A01G100000 chr1B 92.667 300 17 2 1056 1350 543089099 543088800 9.750000e-116 427.0
63 TraesCS7A01G100000 chr1B 95.652 69 3 0 1243 1311 41735542 41735474 1.110000e-20 111.0
64 TraesCS7A01G100000 chr1B 97.872 47 1 0 1010 1056 543089232 543089186 8.740000e-12 82.4
65 TraesCS7A01G100000 chr6A 90.060 332 27 4 3471 3797 21153589 21153919 3.510000e-115 425.0
66 TraesCS7A01G100000 chr6A 91.186 295 26 0 1056 1350 33174083 33173789 5.910000e-108 401.0
67 TraesCS7A01G100000 chr6A 94.595 185 9 1 3299 3482 21153353 21153537 6.210000e-73 285.0
68 TraesCS7A01G100000 chr6A 93.548 186 10 1 3299 3482 167040574 167040389 3.740000e-70 276.0
69 TraesCS7A01G100000 chr6A 95.455 88 4 0 3215 3302 21153213 21153300 1.420000e-29 141.0
70 TraesCS7A01G100000 chr6A 94.444 90 5 0 3216 3305 167040713 167040624 5.110000e-29 139.0
71 TraesCS7A01G100000 chr1D 90.997 311 19 4 1056 1366 403726312 403726011 9.820000e-111 411.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G100000 chr7A 61491294 61495090 3796 True 3310.000000 5491 100.000000 1 3797 2 chr7A.!!$R2 3796
1 TraesCS7A01G100000 chr7A 109228351 109231410 3059 True 2411.500000 3766 97.553000 728 3797 2 chr7A.!!$R3 3069
2 TraesCS7A01G100000 chr7A 726791382 726792109 727 False 1173.000000 1173 95.753000 1 729 1 chr7A.!!$F2 728
3 TraesCS7A01G100000 chr7A 113860561 113861289 728 False 1170.000000 1170 95.622000 1 729 1 chr7A.!!$F1 728
4 TraesCS7A01G100000 chr7A 473026133 473026834 701 False 275.666667 414 93.084333 3216 3796 3 chr7A.!!$F3 580
5 TraesCS7A01G100000 chr7D 499625682 499627295 1613 True 2748.000000 2748 97.406000 1354 2967 1 chr7D.!!$R1 1613
6 TraesCS7A01G100000 chr4B 642737155 642738763 1608 False 2610.000000 2610 95.926000 1354 2967 1 chr4B.!!$F1 1613
7 TraesCS7A01G100000 chr2B 30332577 30335432 2855 True 864.333333 1925 95.926333 1354 2967 3 chr2B.!!$R1 1613
8 TraesCS7A01G100000 chr3B 812459715 812461236 1521 False 1873.000000 1873 89.536000 1354 2820 1 chr3B.!!$F2 1466
9 TraesCS7A01G100000 chr3B 309870574 309871211 637 False 664.000000 664 85.957000 733 1358 1 chr3B.!!$F1 625
10 TraesCS7A01G100000 chr3B 764808252 764808957 705 False 288.666667 442 93.653667 3216 3797 3 chr3B.!!$F3 581
11 TraesCS7A01G100000 chr3A 147436272 147436998 726 False 1182.000000 1182 96.022000 1 728 1 chr3A.!!$F2 727
12 TraesCS7A01G100000 chr3A 710185237 710185963 726 True 1177.000000 1177 95.885000 1 728 1 chr3A.!!$R2 727
13 TraesCS7A01G100000 chr3A 46486585 46487312 727 False 1168.000000 1168 95.616000 1 729 1 chr3A.!!$F1 728
14 TraesCS7A01G100000 chr3A 37743498 37744222 724 True 1164.000000 1164 95.610000 1 728 1 chr3A.!!$R1 727
15 TraesCS7A01G100000 chr3A 734840374 734842138 1764 False 666.833333 968 93.425667 1360 2818 3 chr3A.!!$F3 1458
16 TraesCS7A01G100000 chr3A 734885753 734887522 1769 False 664.833333 957 93.311000 1354 2818 3 chr3A.!!$F4 1464
17 TraesCS7A01G100000 chr2A 582979555 582980281 726 False 1173.000000 1173 95.753000 1 729 1 chr2A.!!$F1 728
18 TraesCS7A01G100000 chr2A 634147337 634148060 723 True 1171.000000 1171 95.868000 4 728 1 chr2A.!!$R2 724
19 TraesCS7A01G100000 chr5A 380693374 380694100 726 True 1166.000000 1166 95.610000 1 728 1 chr5A.!!$R2 727
20 TraesCS7A01G100000 chr5A 623023261 623024433 1172 True 1020.000000 1020 83.488000 1482 2589 1 chr5A.!!$R3 1107
21 TraesCS7A01G100000 chr3D 536912574 536915484 2910 True 1026.500000 1040 96.982000 3189 3797 2 chr3D.!!$R2 608
22 TraesCS7A01G100000 chr3D 67533970 67534605 635 False 981.000000 981 94.654000 727 1357 1 chr3D.!!$F1 630
23 TraesCS7A01G100000 chr3D 604685930 604687480 1550 False 949.000000 983 89.812500 1354 2820 2 chr3D.!!$F2 1466
24 TraesCS7A01G100000 chr2D 312028620 312029255 635 False 992.000000 992 94.969000 728 1357 1 chr2D.!!$F1 629
25 TraesCS7A01G100000 chr5B 618283521 618284681 1160 True 566.000000 603 87.805500 1500 2589 2 chr5B.!!$R2 1089
26 TraesCS7A01G100000 chr5B 290577874 290578574 700 False 472.500000 675 91.074500 728 1358 2 chr5B.!!$F1 630
27 TraesCS7A01G100000 chr5D 498731014 498732189 1175 True 564.000000 601 87.423000 1482 2589 2 chr5D.!!$R2 1107
28 TraesCS7A01G100000 chr6A 21153213 21153919 706 False 283.666667 425 93.370000 3215 3797 3 chr6A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.036010 CGCACCAGGAAGGAGTCAAT 60.036 55.0 0.00 0.00 41.22 2.57 F
498 500 0.039165 GAAAGCAAAGAGGCAACGGG 60.039 55.0 0.00 0.00 46.39 5.28 F
635 637 0.108992 TACGGACAAGCGTCACCATC 60.109 55.0 0.00 0.00 44.54 3.51 F
639 641 0.163788 GACAAGCGTCACCATCAACG 59.836 55.0 0.00 0.00 42.13 4.10 F
718 720 0.179029 ATATTCTTGTTCCCGGGCCG 60.179 55.0 21.46 21.46 0.00 6.13 F
719 721 1.266160 TATTCTTGTTCCCGGGCCGA 61.266 55.0 30.79 5.01 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1089 1178 2.681778 CCTCAGCTCGTCCAGGGT 60.682 66.667 0.00 0.0 0.00 4.34 R
2206 2447 4.471386 ACTTGGCACTACAGTCTGGAATAT 59.529 41.667 4.53 0.0 0.00 1.28 R
2231 2472 5.271598 TGGCCTCTTCCATTTTCAATATGT 58.728 37.500 3.32 0.0 0.00 2.29 R
2589 3170 5.715434 TCATAACAAAGCTTAACCAACCC 57.285 39.130 0.00 0.0 0.00 4.11 R
2653 3234 7.584987 ACTTCATTGTGTGATGCTAGTTAAAC 58.415 34.615 0.00 0.0 36.54 2.01 R
2856 4748 2.749441 GGGCTGACCTTGCTGCTC 60.749 66.667 0.00 0.0 35.85 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 5.697473 TTCGTGAATTTGGCAATGACTTA 57.303 34.783 0.00 0.00 0.00 2.24
143 144 0.036010 CGCACCAGGAAGGAGTCAAT 60.036 55.000 0.00 0.00 41.22 2.57
170 171 5.305644 TCCTGCAAAACAATAGGCCTTTTTA 59.694 36.000 12.58 0.00 0.00 1.52
341 343 1.708341 GATGTTATTGCTGGGCCCAT 58.292 50.000 28.82 13.82 0.00 4.00
343 345 0.334335 TGTTATTGCTGGGCCCATCA 59.666 50.000 28.82 26.49 0.00 3.07
400 402 4.500116 GAGACTGAGACCGGCGCC 62.500 72.222 19.07 19.07 0.00 6.53
402 404 4.500116 GACTGAGACCGGCGCCTC 62.500 72.222 26.68 16.75 0.00 4.70
404 406 4.504916 CTGAGACCGGCGCCTCAG 62.505 72.222 29.21 29.21 46.87 3.35
406 408 4.500116 GAGACCGGCGCCTCAGAC 62.500 72.222 26.68 13.25 0.00 3.51
408 410 4.500116 GACCGGCGCCTCAGACTC 62.500 72.222 26.68 5.52 0.00 3.36
410 412 4.504916 CCGGCGCCTCAGACTCAG 62.505 72.222 26.68 4.88 0.00 3.35
411 413 3.443925 CGGCGCCTCAGACTCAGA 61.444 66.667 26.68 0.00 0.00 3.27
412 414 2.183046 GGCGCCTCAGACTCAGAC 59.817 66.667 22.15 0.00 0.00 3.51
413 415 2.183046 GCGCCTCAGACTCAGACC 59.817 66.667 0.00 0.00 0.00 3.85
414 416 2.487428 CGCCTCAGACTCAGACCG 59.513 66.667 0.00 0.00 0.00 4.79
415 417 2.888863 GCCTCAGACTCAGACCGG 59.111 66.667 0.00 0.00 0.00 5.28
416 418 2.888863 CCTCAGACTCAGACCGGC 59.111 66.667 0.00 0.00 0.00 6.13
417 419 1.979155 CCTCAGACTCAGACCGGCA 60.979 63.158 0.00 0.00 0.00 5.69
418 420 1.326213 CCTCAGACTCAGACCGGCAT 61.326 60.000 0.00 0.00 0.00 4.40
419 421 0.102120 CTCAGACTCAGACCGGCATC 59.898 60.000 0.00 0.00 0.00 3.91
420 422 1.226802 CAGACTCAGACCGGCATCG 60.227 63.158 0.00 0.00 0.00 3.84
421 423 1.378646 AGACTCAGACCGGCATCGA 60.379 57.895 0.00 0.00 39.00 3.59
422 424 1.064946 GACTCAGACCGGCATCGAG 59.935 63.158 0.00 5.19 39.00 4.04
423 425 1.377366 GACTCAGACCGGCATCGAGA 61.377 60.000 15.37 4.49 39.00 4.04
424 426 1.064946 CTCAGACCGGCATCGAGAC 59.935 63.158 0.00 0.00 39.00 3.36
425 427 2.105128 CAGACCGGCATCGAGACC 59.895 66.667 0.00 0.00 39.00 3.85
433 435 4.193334 CATCGAGACCGGCGCTGA 62.193 66.667 20.25 0.00 36.24 4.26
434 436 3.893763 ATCGAGACCGGCGCTGAG 61.894 66.667 20.25 10.62 36.24 3.35
436 438 4.838486 CGAGACCGGCGCTGAGAC 62.838 72.222 20.25 8.40 0.00 3.36
437 439 3.444805 GAGACCGGCGCTGAGACT 61.445 66.667 20.25 13.28 0.00 3.24
438 440 3.691744 GAGACCGGCGCTGAGACTG 62.692 68.421 20.25 2.28 0.00 3.51
439 441 3.749064 GACCGGCGCTGAGACTGA 61.749 66.667 20.25 0.00 0.00 3.41
440 442 3.691744 GACCGGCGCTGAGACTGAG 62.692 68.421 20.25 0.58 0.00 3.35
441 443 3.443925 CCGGCGCTGAGACTGAGA 61.444 66.667 20.25 0.00 0.00 3.27
442 444 2.202544 CGGCGCTGAGACTGAGAC 60.203 66.667 11.90 0.00 0.00 3.36
443 445 2.183046 GGCGCTGAGACTGAGACC 59.817 66.667 7.64 0.00 0.00 3.85
444 446 2.202544 GCGCTGAGACTGAGACCG 60.203 66.667 0.00 0.00 0.00 4.79
445 447 2.487428 CGCTGAGACTGAGACCGG 59.513 66.667 0.00 0.00 0.00 5.28
446 448 2.183046 GCTGAGACTGAGACCGGC 59.817 66.667 0.00 0.00 0.00 6.13
447 449 2.487428 CTGAGACTGAGACCGGCG 59.513 66.667 0.00 0.00 0.00 6.46
448 450 3.691744 CTGAGACTGAGACCGGCGC 62.692 68.421 0.00 0.00 0.00 6.53
449 451 3.444805 GAGACTGAGACCGGCGCT 61.445 66.667 7.64 0.00 0.00 5.92
450 452 3.691744 GAGACTGAGACCGGCGCTG 62.692 68.421 9.96 9.96 0.00 5.18
473 475 3.075005 GGGAGCAGAGCCGGTGTA 61.075 66.667 1.90 0.00 0.00 2.90
474 476 2.496817 GGAGCAGAGCCGGTGTAG 59.503 66.667 1.90 0.00 0.00 2.74
475 477 2.052690 GGAGCAGAGCCGGTGTAGA 61.053 63.158 1.90 0.00 0.00 2.59
476 478 1.605058 GGAGCAGAGCCGGTGTAGAA 61.605 60.000 1.90 0.00 0.00 2.10
477 479 0.458716 GAGCAGAGCCGGTGTAGAAC 60.459 60.000 1.90 0.00 0.00 3.01
478 480 1.448013 GCAGAGCCGGTGTAGAACC 60.448 63.158 1.90 0.00 46.60 3.62
488 490 3.537793 GGTGTAGAACCGAAAGCAAAG 57.462 47.619 0.00 0.00 39.81 2.77
489 491 3.135994 GGTGTAGAACCGAAAGCAAAGA 58.864 45.455 0.00 0.00 39.81 2.52
490 492 3.186613 GGTGTAGAACCGAAAGCAAAGAG 59.813 47.826 0.00 0.00 39.81 2.85
491 493 3.186613 GTGTAGAACCGAAAGCAAAGAGG 59.813 47.826 0.00 0.00 0.00 3.69
492 494 1.239347 AGAACCGAAAGCAAAGAGGC 58.761 50.000 0.00 0.00 0.00 4.70
493 495 0.951558 GAACCGAAAGCAAAGAGGCA 59.048 50.000 0.00 0.00 35.83 4.75
494 496 1.336755 GAACCGAAAGCAAAGAGGCAA 59.663 47.619 0.00 0.00 35.83 4.52
495 497 0.668535 ACCGAAAGCAAAGAGGCAAC 59.331 50.000 0.00 0.00 35.83 4.17
496 498 0.385974 CCGAAAGCAAAGAGGCAACG 60.386 55.000 0.00 0.00 46.39 4.10
497 499 0.385974 CGAAAGCAAAGAGGCAACGG 60.386 55.000 0.00 0.00 46.39 4.44
498 500 0.039165 GAAAGCAAAGAGGCAACGGG 60.039 55.000 0.00 0.00 46.39 5.28
499 501 0.755327 AAAGCAAAGAGGCAACGGGT 60.755 50.000 0.00 0.00 46.39 5.28
500 502 0.755327 AAGCAAAGAGGCAACGGGTT 60.755 50.000 0.00 0.00 46.39 4.11
501 503 1.172812 AGCAAAGAGGCAACGGGTTC 61.173 55.000 0.00 0.00 46.39 3.62
502 504 1.956802 CAAAGAGGCAACGGGTTCC 59.043 57.895 0.00 0.00 46.39 3.62
503 505 0.537371 CAAAGAGGCAACGGGTTCCT 60.537 55.000 0.00 0.00 46.39 3.36
504 506 1.061546 AAAGAGGCAACGGGTTCCTA 58.938 50.000 0.00 0.00 46.39 2.94
505 507 0.323957 AAGAGGCAACGGGTTCCTAC 59.676 55.000 0.00 0.00 46.39 3.18
506 508 1.078637 GAGGCAACGGGTTCCTACC 60.079 63.158 0.00 0.00 44.22 3.18
507 509 1.833787 GAGGCAACGGGTTCCTACCA 61.834 60.000 0.00 0.00 46.96 3.25
508 510 1.073548 GGCAACGGGTTCCTACCAA 59.926 57.895 0.00 0.00 46.96 3.67
509 511 0.537828 GGCAACGGGTTCCTACCAAA 60.538 55.000 0.00 0.00 46.96 3.28
510 512 0.594602 GCAACGGGTTCCTACCAAAC 59.405 55.000 0.00 0.00 46.96 2.93
511 513 1.816572 GCAACGGGTTCCTACCAAACT 60.817 52.381 0.00 0.00 46.96 2.66
512 514 2.148768 CAACGGGTTCCTACCAAACTC 58.851 52.381 0.00 0.00 46.96 3.01
513 515 1.426751 ACGGGTTCCTACCAAACTCA 58.573 50.000 0.00 0.00 46.96 3.41
514 516 1.346722 ACGGGTTCCTACCAAACTCAG 59.653 52.381 0.00 0.00 46.96 3.35
515 517 1.338769 CGGGTTCCTACCAAACTCAGG 60.339 57.143 0.00 0.00 46.96 3.86
516 518 1.982958 GGGTTCCTACCAAACTCAGGA 59.017 52.381 0.00 0.00 46.96 3.86
517 519 2.290134 GGGTTCCTACCAAACTCAGGAC 60.290 54.545 0.00 0.00 46.96 3.85
518 520 2.638363 GGTTCCTACCAAACTCAGGACT 59.362 50.000 0.00 0.00 44.36 3.85
519 521 3.836562 GGTTCCTACCAAACTCAGGACTA 59.163 47.826 0.00 0.00 44.36 2.59
520 522 4.322574 GGTTCCTACCAAACTCAGGACTAC 60.323 50.000 0.00 0.00 44.36 2.73
521 523 4.399483 TCCTACCAAACTCAGGACTACT 57.601 45.455 0.00 0.00 33.48 2.57
522 524 5.525454 TCCTACCAAACTCAGGACTACTA 57.475 43.478 0.00 0.00 33.48 1.82
523 525 5.507637 TCCTACCAAACTCAGGACTACTAG 58.492 45.833 0.00 0.00 33.48 2.57
524 526 5.252397 TCCTACCAAACTCAGGACTACTAGA 59.748 44.000 0.00 0.00 33.48 2.43
525 527 5.591067 CCTACCAAACTCAGGACTACTAGAG 59.409 48.000 0.00 0.00 33.39 2.43
526 528 5.000570 ACCAAACTCAGGACTACTAGAGT 57.999 43.478 0.00 0.00 42.90 3.24
527 529 4.767928 ACCAAACTCAGGACTACTAGAGTG 59.232 45.833 0.00 0.00 39.06 3.51
528 530 4.158764 CCAAACTCAGGACTACTAGAGTGG 59.841 50.000 0.00 0.00 39.06 4.00
529 531 4.661247 AACTCAGGACTACTAGAGTGGT 57.339 45.455 0.00 0.00 42.59 4.16
530 532 3.958018 ACTCAGGACTACTAGAGTGGTG 58.042 50.000 3.12 0.00 39.92 4.17
531 533 3.283751 CTCAGGACTACTAGAGTGGTGG 58.716 54.545 3.12 0.00 39.92 4.61
532 534 2.648304 TCAGGACTACTAGAGTGGTGGT 59.352 50.000 3.12 0.00 39.92 4.16
533 535 3.018149 CAGGACTACTAGAGTGGTGGTC 58.982 54.545 3.12 0.00 39.92 4.02
534 536 2.648304 AGGACTACTAGAGTGGTGGTCA 59.352 50.000 3.12 0.00 43.67 4.02
535 537 2.754002 GGACTACTAGAGTGGTGGTCAC 59.246 54.545 3.12 0.00 43.67 3.67
542 544 4.043168 GTGGTGGTCACGAAGGTG 57.957 61.111 0.00 0.00 45.78 4.00
543 545 1.597027 GTGGTGGTCACGAAGGTGG 60.597 63.158 0.00 0.00 44.50 4.61
544 546 1.762858 TGGTGGTCACGAAGGTGGA 60.763 57.895 0.00 0.00 44.50 4.02
545 547 1.301479 GGTGGTCACGAAGGTGGAC 60.301 63.158 0.00 0.00 44.50 4.02
546 548 1.663702 GTGGTCACGAAGGTGGACG 60.664 63.158 0.00 0.00 44.50 4.79
547 549 1.829096 TGGTCACGAAGGTGGACGA 60.829 57.895 0.00 0.00 44.50 4.20
548 550 1.372623 GGTCACGAAGGTGGACGAC 60.373 63.158 0.00 0.00 44.50 4.34
549 551 1.728426 GTCACGAAGGTGGACGACG 60.728 63.158 0.00 0.00 44.50 5.12
550 552 2.430244 CACGAAGGTGGACGACGG 60.430 66.667 0.00 0.00 40.58 4.79
551 553 4.353437 ACGAAGGTGGACGACGGC 62.353 66.667 0.00 0.00 0.00 5.68
552 554 4.351938 CGAAGGTGGACGACGGCA 62.352 66.667 1.63 0.00 0.00 5.69
553 555 2.029964 GAAGGTGGACGACGGCAA 59.970 61.111 1.63 0.00 0.00 4.52
554 556 1.375523 GAAGGTGGACGACGGCAAT 60.376 57.895 1.63 0.00 0.00 3.56
555 557 0.953960 GAAGGTGGACGACGGCAATT 60.954 55.000 1.63 0.00 0.00 2.32
556 558 0.536460 AAGGTGGACGACGGCAATTT 60.536 50.000 1.63 0.00 0.00 1.82
557 559 0.536460 AGGTGGACGACGGCAATTTT 60.536 50.000 1.63 0.00 0.00 1.82
558 560 0.386731 GGTGGACGACGGCAATTTTG 60.387 55.000 1.63 0.00 0.00 2.44
559 561 0.589223 GTGGACGACGGCAATTTTGA 59.411 50.000 1.63 0.00 0.00 2.69
560 562 0.871722 TGGACGACGGCAATTTTGAG 59.128 50.000 1.63 0.00 0.00 3.02
561 563 0.454452 GGACGACGGCAATTTTGAGC 60.454 55.000 1.63 0.00 0.00 4.26
584 586 4.873129 GCATCCGAGGAAGCGCGA 62.873 66.667 12.10 0.00 0.00 5.87
585 587 2.956964 CATCCGAGGAAGCGCGAC 60.957 66.667 12.10 0.04 0.00 5.19
586 588 4.554363 ATCCGAGGAAGCGCGACG 62.554 66.667 12.10 4.77 0.00 5.12
588 590 4.554363 CCGAGGAAGCGCGACGAT 62.554 66.667 12.10 0.00 0.00 3.73
589 591 3.315521 CGAGGAAGCGCGACGATG 61.316 66.667 12.10 0.00 0.00 3.84
590 592 3.621394 GAGGAAGCGCGACGATGC 61.621 66.667 12.10 0.92 0.00 3.91
591 593 4.135153 AGGAAGCGCGACGATGCT 62.135 61.111 12.10 8.95 44.97 3.79
592 594 2.278596 GGAAGCGCGACGATGCTA 60.279 61.111 12.10 0.00 41.46 3.49
593 595 2.577785 GGAAGCGCGACGATGCTAC 61.578 63.158 12.10 8.01 41.46 3.58
594 596 2.906719 GAAGCGCGACGATGCTACG 61.907 63.158 12.10 1.02 41.46 3.51
595 597 3.391160 AAGCGCGACGATGCTACGA 62.391 57.895 12.10 0.00 41.46 3.43
596 598 3.669446 GCGCGACGATGCTACGAC 61.669 66.667 12.10 3.40 37.03 4.34
597 599 2.277057 CGCGACGATGCTACGACA 60.277 61.111 0.00 0.00 37.03 4.35
598 600 1.866059 CGCGACGATGCTACGACAA 60.866 57.895 0.00 0.00 37.03 3.18
599 601 1.200474 CGCGACGATGCTACGACAAT 61.200 55.000 0.00 0.00 37.03 2.71
600 602 0.498927 GCGACGATGCTACGACAATC 59.501 55.000 0.00 0.00 37.03 2.67
601 603 1.822581 CGACGATGCTACGACAATCA 58.177 50.000 9.70 0.00 37.03 2.57
602 604 2.182014 CGACGATGCTACGACAATCAA 58.818 47.619 9.70 0.00 37.03 2.57
603 605 2.596862 CGACGATGCTACGACAATCAAA 59.403 45.455 9.70 0.00 37.03 2.69
604 606 3.242944 CGACGATGCTACGACAATCAAAT 59.757 43.478 9.70 0.00 37.03 2.32
605 607 4.439776 CGACGATGCTACGACAATCAAATA 59.560 41.667 9.70 0.00 37.03 1.40
606 608 5.386424 CGACGATGCTACGACAATCAAATAG 60.386 44.000 9.70 0.00 37.03 1.73
607 609 4.745125 ACGATGCTACGACAATCAAATAGG 59.255 41.667 9.70 0.00 37.03 2.57
608 610 4.376413 CGATGCTACGACAATCAAATAGGC 60.376 45.833 0.00 0.00 35.09 3.93
609 611 4.137116 TGCTACGACAATCAAATAGGCT 57.863 40.909 0.00 0.00 0.00 4.58
610 612 3.871006 TGCTACGACAATCAAATAGGCTG 59.129 43.478 0.00 0.00 0.00 4.85
611 613 3.303395 GCTACGACAATCAAATAGGCTGC 60.303 47.826 0.00 0.00 0.00 5.25
612 614 2.710377 ACGACAATCAAATAGGCTGCA 58.290 42.857 0.50 0.00 0.00 4.41
613 615 3.282021 ACGACAATCAAATAGGCTGCAT 58.718 40.909 0.50 0.00 0.00 3.96
614 616 3.313526 ACGACAATCAAATAGGCTGCATC 59.686 43.478 0.50 0.00 0.00 3.91
615 617 3.605461 CGACAATCAAATAGGCTGCATCG 60.605 47.826 0.50 0.00 0.00 3.84
616 618 3.282021 ACAATCAAATAGGCTGCATCGT 58.718 40.909 0.50 0.00 0.00 3.73
617 619 4.450976 ACAATCAAATAGGCTGCATCGTA 58.549 39.130 0.50 0.00 0.00 3.43
618 620 4.273480 ACAATCAAATAGGCTGCATCGTAC 59.727 41.667 0.50 0.00 0.00 3.67
619 621 2.469826 TCAAATAGGCTGCATCGTACG 58.530 47.619 9.53 9.53 0.00 3.67
620 622 1.526887 CAAATAGGCTGCATCGTACGG 59.473 52.381 16.52 0.69 0.00 4.02
621 623 1.037493 AATAGGCTGCATCGTACGGA 58.963 50.000 16.52 2.44 0.00 4.69
622 624 0.314302 ATAGGCTGCATCGTACGGAC 59.686 55.000 16.52 5.80 0.00 4.79
623 625 1.033202 TAGGCTGCATCGTACGGACA 61.033 55.000 16.52 10.23 0.00 4.02
624 626 1.447140 GGCTGCATCGTACGGACAA 60.447 57.895 16.52 0.00 0.00 3.18
625 627 1.421410 GGCTGCATCGTACGGACAAG 61.421 60.000 16.52 9.68 0.00 3.16
626 628 1.999051 CTGCATCGTACGGACAAGC 59.001 57.895 16.52 12.51 0.00 4.01
627 629 1.742900 CTGCATCGTACGGACAAGCG 61.743 60.000 16.52 5.81 0.00 4.68
628 630 1.804326 GCATCGTACGGACAAGCGT 60.804 57.895 16.52 0.00 0.00 5.07
629 631 1.740043 GCATCGTACGGACAAGCGTC 61.740 60.000 16.52 0.00 41.80 5.19
630 632 0.455464 CATCGTACGGACAAGCGTCA 60.455 55.000 16.52 0.00 44.54 4.35
631 633 0.455633 ATCGTACGGACAAGCGTCAC 60.456 55.000 16.52 0.00 44.54 3.67
632 634 2.084681 CGTACGGACAAGCGTCACC 61.085 63.158 7.57 0.00 44.54 4.02
633 635 1.007038 GTACGGACAAGCGTCACCA 60.007 57.895 0.00 0.00 44.54 4.17
634 636 0.389426 GTACGGACAAGCGTCACCAT 60.389 55.000 0.00 0.00 44.54 3.55
635 637 0.108992 TACGGACAAGCGTCACCATC 60.109 55.000 0.00 0.00 44.54 3.51
636 638 1.374125 CGGACAAGCGTCACCATCA 60.374 57.895 0.00 0.00 44.54 3.07
637 639 0.948623 CGGACAAGCGTCACCATCAA 60.949 55.000 0.00 0.00 44.54 2.57
638 640 0.517316 GGACAAGCGTCACCATCAAC 59.483 55.000 0.00 0.00 44.54 3.18
639 641 0.163788 GACAAGCGTCACCATCAACG 59.836 55.000 0.00 0.00 42.13 4.10
640 642 0.249699 ACAAGCGTCACCATCAACGA 60.250 50.000 0.00 0.00 41.29 3.85
641 643 1.078709 CAAGCGTCACCATCAACGAT 58.921 50.000 0.00 0.00 41.29 3.73
642 644 1.078709 AAGCGTCACCATCAACGATG 58.921 50.000 0.00 0.00 41.29 3.84
643 645 0.246360 AGCGTCACCATCAACGATGA 59.754 50.000 5.54 0.00 42.09 2.92
644 646 0.647410 GCGTCACCATCAACGATGAG 59.353 55.000 5.54 0.00 42.09 2.90
645 647 1.735700 GCGTCACCATCAACGATGAGA 60.736 52.381 5.54 1.10 42.09 3.27
646 648 2.606108 CGTCACCATCAACGATGAGAA 58.394 47.619 5.54 0.00 42.09 2.87
647 649 2.993220 CGTCACCATCAACGATGAGAAA 59.007 45.455 5.54 0.00 42.09 2.52
648 650 3.181530 CGTCACCATCAACGATGAGAAAC 60.182 47.826 5.54 0.00 42.09 2.78
649 651 3.997021 GTCACCATCAACGATGAGAAACT 59.003 43.478 5.54 0.00 42.09 2.66
650 652 5.168569 GTCACCATCAACGATGAGAAACTA 58.831 41.667 5.54 0.00 42.09 2.24
651 653 5.062308 GTCACCATCAACGATGAGAAACTAC 59.938 44.000 5.54 0.00 42.09 2.73
652 654 4.031765 CACCATCAACGATGAGAAACTACG 59.968 45.833 5.54 0.00 42.09 3.51
653 655 3.551890 CCATCAACGATGAGAAACTACGG 59.448 47.826 5.54 0.00 42.09 4.02
654 656 4.421058 CATCAACGATGAGAAACTACGGA 58.579 43.478 0.82 0.00 42.09 4.69
655 657 4.508461 TCAACGATGAGAAACTACGGAA 57.492 40.909 0.00 0.00 0.00 4.30
656 658 4.482386 TCAACGATGAGAAACTACGGAAG 58.518 43.478 0.00 0.00 0.00 3.46
657 659 4.216902 TCAACGATGAGAAACTACGGAAGA 59.783 41.667 0.00 0.00 0.00 2.87
658 660 4.985538 ACGATGAGAAACTACGGAAGAT 57.014 40.909 0.00 0.00 0.00 2.40
659 661 6.094464 TCAACGATGAGAAACTACGGAAGATA 59.906 38.462 0.00 0.00 0.00 1.98
660 662 6.062434 ACGATGAGAAACTACGGAAGATAG 57.938 41.667 0.00 0.00 0.00 2.08
661 663 5.821470 ACGATGAGAAACTACGGAAGATAGA 59.179 40.000 0.00 0.00 0.00 1.98
662 664 6.318144 ACGATGAGAAACTACGGAAGATAGAA 59.682 38.462 0.00 0.00 0.00 2.10
663 665 7.148120 ACGATGAGAAACTACGGAAGATAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
664 666 7.701078 CGATGAGAAACTACGGAAGATAGAAAA 59.299 37.037 0.00 0.00 0.00 2.29
665 667 9.535878 GATGAGAAACTACGGAAGATAGAAAAT 57.464 33.333 0.00 0.00 0.00 1.82
671 673 9.765795 AAACTACGGAAGATAGAAAATATGAGG 57.234 33.333 0.00 0.00 0.00 3.86
672 674 8.707796 ACTACGGAAGATAGAAAATATGAGGA 57.292 34.615 0.00 0.00 0.00 3.71
673 675 8.798402 ACTACGGAAGATAGAAAATATGAGGAG 58.202 37.037 0.00 0.00 0.00 3.69
674 676 6.459923 ACGGAAGATAGAAAATATGAGGAGC 58.540 40.000 0.00 0.00 0.00 4.70
675 677 6.268847 ACGGAAGATAGAAAATATGAGGAGCT 59.731 38.462 0.00 0.00 0.00 4.09
676 678 6.811170 CGGAAGATAGAAAATATGAGGAGCTC 59.189 42.308 4.71 4.71 0.00 4.09
677 679 7.102993 GGAAGATAGAAAATATGAGGAGCTCC 58.897 42.308 26.22 26.22 0.00 4.70
678 680 6.619329 AGATAGAAAATATGAGGAGCTCCC 57.381 41.667 29.54 20.23 36.42 4.30
692 694 4.561500 GAGCTCCCTCCTAAAGAAGTTT 57.438 45.455 0.87 0.00 31.68 2.66
693 695 4.509616 GAGCTCCCTCCTAAAGAAGTTTC 58.490 47.826 0.87 0.00 31.68 2.78
694 696 3.910627 AGCTCCCTCCTAAAGAAGTTTCA 59.089 43.478 0.00 0.00 0.00 2.69
695 697 4.004314 GCTCCCTCCTAAAGAAGTTTCAC 58.996 47.826 0.00 0.00 0.00 3.18
696 698 4.580868 CTCCCTCCTAAAGAAGTTTCACC 58.419 47.826 0.00 0.00 0.00 4.02
697 699 3.977999 TCCCTCCTAAAGAAGTTTCACCA 59.022 43.478 0.00 0.00 0.00 4.17
698 700 4.041691 TCCCTCCTAAAGAAGTTTCACCAG 59.958 45.833 0.00 0.00 0.00 4.00
699 701 4.041691 CCCTCCTAAAGAAGTTTCACCAGA 59.958 45.833 0.00 0.00 0.00 3.86
700 702 5.280727 CCCTCCTAAAGAAGTTTCACCAGAT 60.281 44.000 0.00 0.00 0.00 2.90
701 703 6.070194 CCCTCCTAAAGAAGTTTCACCAGATA 60.070 42.308 0.00 0.00 0.00 1.98
702 704 7.366011 CCCTCCTAAAGAAGTTTCACCAGATAT 60.366 40.741 0.00 0.00 0.00 1.63
703 705 8.049721 CCTCCTAAAGAAGTTTCACCAGATATT 58.950 37.037 0.00 0.00 0.00 1.28
704 706 9.103861 CTCCTAAAGAAGTTTCACCAGATATTC 57.896 37.037 0.00 0.00 0.00 1.75
705 707 8.826765 TCCTAAAGAAGTTTCACCAGATATTCT 58.173 33.333 0.00 0.00 0.00 2.40
706 708 9.454859 CCTAAAGAAGTTTCACCAGATATTCTT 57.545 33.333 0.00 0.00 37.17 2.52
708 710 8.697507 AAAGAAGTTTCACCAGATATTCTTGT 57.302 30.769 0.00 0.00 36.09 3.16
709 711 8.697507 AAGAAGTTTCACCAGATATTCTTGTT 57.302 30.769 0.00 0.00 35.00 2.83
710 712 8.329203 AGAAGTTTCACCAGATATTCTTGTTC 57.671 34.615 0.00 0.00 0.00 3.18
711 713 7.391833 AGAAGTTTCACCAGATATTCTTGTTCC 59.608 37.037 0.00 0.00 0.00 3.62
712 714 5.946377 AGTTTCACCAGATATTCTTGTTCCC 59.054 40.000 0.00 0.00 0.00 3.97
713 715 4.137116 TCACCAGATATTCTTGTTCCCG 57.863 45.455 0.00 0.00 0.00 5.14
714 716 3.118408 TCACCAGATATTCTTGTTCCCGG 60.118 47.826 0.00 0.00 0.00 5.73
715 717 2.172717 ACCAGATATTCTTGTTCCCGGG 59.827 50.000 16.85 16.85 0.00 5.73
716 718 2.222027 CAGATATTCTTGTTCCCGGGC 58.778 52.381 18.49 2.59 0.00 6.13
717 719 1.143073 AGATATTCTTGTTCCCGGGCC 59.857 52.381 18.49 9.63 0.00 5.80
718 720 0.179029 ATATTCTTGTTCCCGGGCCG 60.179 55.000 21.46 21.46 0.00 6.13
719 721 1.266160 TATTCTTGTTCCCGGGCCGA 61.266 55.000 30.79 5.01 0.00 5.54
720 722 2.132089 ATTCTTGTTCCCGGGCCGAA 62.132 55.000 30.79 12.47 0.00 4.30
721 723 2.281900 CTTGTTCCCGGGCCGAAA 60.282 61.111 30.79 18.55 0.00 3.46
722 724 1.677633 CTTGTTCCCGGGCCGAAAT 60.678 57.895 30.79 0.00 0.00 2.17
723 725 1.933115 CTTGTTCCCGGGCCGAAATG 61.933 60.000 30.79 10.65 0.00 2.32
724 726 2.045731 GTTCCCGGGCCGAAATGA 60.046 61.111 30.79 15.21 0.00 2.57
725 727 2.112815 GTTCCCGGGCCGAAATGAG 61.113 63.158 30.79 9.35 0.00 2.90
743 745 8.572185 CGAAATGAGAATCTCTACTCCTAATGA 58.428 37.037 11.92 0.00 34.92 2.57
759 761 5.248477 TCCTAATGAAGCAGTTGGTAGTCTT 59.752 40.000 0.00 0.00 0.00 3.01
914 947 1.614850 GCCCTATCTCCCTCGTCTAGG 60.615 61.905 0.00 0.00 46.09 3.02
945 1006 3.089874 CCCAATCTCCCCGCTCCA 61.090 66.667 0.00 0.00 0.00 3.86
1108 1197 4.504916 CCTGGACGAGCTGAGGCG 62.505 72.222 0.00 0.00 44.37 5.52
1377 1481 5.949952 TCTGTCAATAGCAAGGTCTGTACTA 59.050 40.000 0.00 0.00 0.00 1.82
1634 1775 5.578336 GGTTAAGGCAGAGAAATTGAATTGC 59.422 40.000 0.00 0.00 0.00 3.56
1736 1878 3.058914 GCAGTACAGCTTGTTGACGAATT 60.059 43.478 2.52 0.00 0.00 2.17
2206 2447 5.364778 TCTGCACTGCACTACTTTTTCTTA 58.635 37.500 0.00 0.00 33.79 2.10
2231 2472 1.344438 CCAGACTGTAGTGCCAAGTCA 59.656 52.381 0.93 0.00 32.46 3.41
2268 2509 8.893388 TGGAAGAGGCCATCAAGAATTGTGAA 62.893 42.308 5.01 0.00 39.21 3.18
2589 3170 7.880195 AGTGCTGCATATAGGGTTCTAAAATAG 59.120 37.037 5.27 0.00 0.00 1.73
2638 3219 6.058833 TGCCAGTACAATAAGTTTTCACTGA 58.941 36.000 0.00 0.00 35.12 3.41
2653 3234 8.950210 AGTTTTCACTGAACTGGATATAACATG 58.050 33.333 0.00 0.00 36.08 3.21
2856 4748 0.519519 CTCGATCTACGCTAGCCTGG 59.480 60.000 9.66 0.00 42.26 4.45
2967 4860 8.576442 CCACATTTAGGAAAACATAACAAGTCT 58.424 33.333 0.00 0.00 0.00 3.24
2968 4861 9.965824 CACATTTAGGAAAACATAACAAGTCTT 57.034 29.630 0.00 0.00 0.00 3.01
3468 5418 6.258068 GGATATAAGCAAAGAGTAGCACGTTT 59.742 38.462 0.00 0.00 0.00 3.60
3617 7874 1.753930 AAGGCATGTGCAATCATCGA 58.246 45.000 7.36 0.00 44.36 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.567138 AGTTTGTAGCATAAGTCATTGCC 57.433 39.130 0.00 0.00 39.72 4.52
76 77 7.549134 TGTCCTAGTTTGTAGCATAAGTCATTG 59.451 37.037 0.00 0.00 0.00 2.82
77 78 7.620880 TGTCCTAGTTTGTAGCATAAGTCATT 58.379 34.615 0.00 0.00 0.00 2.57
85 86 6.265649 ACTCGATATGTCCTAGTTTGTAGCAT 59.734 38.462 0.00 0.00 0.00 3.79
143 144 4.609301 AGGCCTATTGTTTTGCAGGAATA 58.391 39.130 1.29 0.00 0.00 1.75
341 343 2.284625 AGTCCCCGATGCCACTGA 60.285 61.111 0.00 0.00 0.00 3.41
343 345 2.284625 TCAGTCCCCGATGCCACT 60.285 61.111 0.00 0.00 0.00 4.00
400 402 0.102120 GATGCCGGTCTGAGTCTGAG 59.898 60.000 1.90 0.00 0.00 3.35
401 403 1.657751 CGATGCCGGTCTGAGTCTGA 61.658 60.000 1.90 0.00 0.00 3.27
402 404 1.226802 CGATGCCGGTCTGAGTCTG 60.227 63.158 1.90 0.00 0.00 3.51
403 405 1.378646 TCGATGCCGGTCTGAGTCT 60.379 57.895 1.90 0.00 36.24 3.24
404 406 1.064946 CTCGATGCCGGTCTGAGTC 59.935 63.158 1.90 0.00 36.24 3.36
405 407 1.378646 TCTCGATGCCGGTCTGAGT 60.379 57.895 1.90 0.00 36.24 3.41
406 408 1.064946 GTCTCGATGCCGGTCTGAG 59.935 63.158 1.90 6.05 36.24 3.35
407 409 2.415608 GGTCTCGATGCCGGTCTGA 61.416 63.158 1.90 0.00 36.24 3.27
408 410 2.105128 GGTCTCGATGCCGGTCTG 59.895 66.667 1.90 0.00 36.24 3.51
409 411 3.518998 CGGTCTCGATGCCGGTCT 61.519 66.667 16.93 0.00 43.85 3.85
416 418 4.193334 TCAGCGCCGGTCTCGATG 62.193 66.667 11.31 11.31 43.71 3.84
417 419 3.893763 CTCAGCGCCGGTCTCGAT 61.894 66.667 2.29 0.00 39.00 3.59
419 421 4.838486 GTCTCAGCGCCGGTCTCG 62.838 72.222 2.29 0.00 0.00 4.04
420 422 3.444805 AGTCTCAGCGCCGGTCTC 61.445 66.667 2.29 0.00 0.00 3.36
421 423 3.753434 CAGTCTCAGCGCCGGTCT 61.753 66.667 2.29 0.00 0.00 3.85
422 424 3.691744 CTCAGTCTCAGCGCCGGTC 62.692 68.421 2.29 0.00 0.00 4.79
423 425 3.753434 CTCAGTCTCAGCGCCGGT 61.753 66.667 2.29 0.00 0.00 5.28
424 426 3.443925 TCTCAGTCTCAGCGCCGG 61.444 66.667 2.29 0.00 0.00 6.13
425 427 2.202544 GTCTCAGTCTCAGCGCCG 60.203 66.667 2.29 0.00 0.00 6.46
426 428 2.183046 GGTCTCAGTCTCAGCGCC 59.817 66.667 2.29 0.00 0.00 6.53
427 429 2.202544 CGGTCTCAGTCTCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
428 430 2.487428 CCGGTCTCAGTCTCAGCG 59.513 66.667 0.00 0.00 0.00 5.18
429 431 2.183046 GCCGGTCTCAGTCTCAGC 59.817 66.667 1.90 0.00 0.00 4.26
430 432 2.487428 CGCCGGTCTCAGTCTCAG 59.513 66.667 1.90 0.00 0.00 3.35
431 433 3.749064 GCGCCGGTCTCAGTCTCA 61.749 66.667 1.90 0.00 0.00 3.27
432 434 3.444805 AGCGCCGGTCTCAGTCTC 61.445 66.667 2.29 0.00 0.00 3.36
433 435 3.753434 CAGCGCCGGTCTCAGTCT 61.753 66.667 2.29 0.00 0.00 3.24
456 458 3.075005 TACACCGGCTCTGCTCCC 61.075 66.667 0.00 0.00 0.00 4.30
457 459 1.605058 TTCTACACCGGCTCTGCTCC 61.605 60.000 0.00 0.00 0.00 4.70
458 460 0.458716 GTTCTACACCGGCTCTGCTC 60.459 60.000 0.00 0.00 0.00 4.26
459 461 1.592223 GTTCTACACCGGCTCTGCT 59.408 57.895 0.00 0.00 0.00 4.24
460 462 1.448013 GGTTCTACACCGGCTCTGC 60.448 63.158 0.00 0.00 35.12 4.26
461 463 4.913126 GGTTCTACACCGGCTCTG 57.087 61.111 0.00 0.00 35.12 3.35
468 470 3.135994 TCTTTGCTTTCGGTTCTACACC 58.864 45.455 0.00 0.00 43.16 4.16
469 471 3.186613 CCTCTTTGCTTTCGGTTCTACAC 59.813 47.826 0.00 0.00 0.00 2.90
470 472 3.399330 CCTCTTTGCTTTCGGTTCTACA 58.601 45.455 0.00 0.00 0.00 2.74
471 473 2.159824 GCCTCTTTGCTTTCGGTTCTAC 59.840 50.000 0.00 0.00 0.00 2.59
472 474 2.224426 TGCCTCTTTGCTTTCGGTTCTA 60.224 45.455 0.00 0.00 0.00 2.10
473 475 1.239347 GCCTCTTTGCTTTCGGTTCT 58.761 50.000 0.00 0.00 0.00 3.01
474 476 0.951558 TGCCTCTTTGCTTTCGGTTC 59.048 50.000 0.00 0.00 0.00 3.62
475 477 1.067060 GTTGCCTCTTTGCTTTCGGTT 59.933 47.619 0.00 0.00 0.00 4.44
476 478 0.668535 GTTGCCTCTTTGCTTTCGGT 59.331 50.000 0.00 0.00 0.00 4.69
477 479 0.385974 CGTTGCCTCTTTGCTTTCGG 60.386 55.000 0.00 0.00 0.00 4.30
478 480 0.385974 CCGTTGCCTCTTTGCTTTCG 60.386 55.000 0.00 0.00 0.00 3.46
479 481 0.039165 CCCGTTGCCTCTTTGCTTTC 60.039 55.000 0.00 0.00 0.00 2.62
480 482 0.755327 ACCCGTTGCCTCTTTGCTTT 60.755 50.000 0.00 0.00 0.00 3.51
481 483 0.755327 AACCCGTTGCCTCTTTGCTT 60.755 50.000 0.00 0.00 0.00 3.91
482 484 1.152756 AACCCGTTGCCTCTTTGCT 60.153 52.632 0.00 0.00 0.00 3.91
483 485 1.285950 GAACCCGTTGCCTCTTTGC 59.714 57.895 0.00 0.00 0.00 3.68
484 486 0.537371 AGGAACCCGTTGCCTCTTTG 60.537 55.000 0.00 0.00 0.00 2.77
485 487 1.061546 TAGGAACCCGTTGCCTCTTT 58.938 50.000 0.00 0.00 33.28 2.52
486 488 0.323957 GTAGGAACCCGTTGCCTCTT 59.676 55.000 0.00 0.00 33.28 2.85
487 489 1.551019 GGTAGGAACCCGTTGCCTCT 61.551 60.000 0.00 0.00 40.21 3.69
488 490 1.078637 GGTAGGAACCCGTTGCCTC 60.079 63.158 0.00 0.00 40.21 4.70
489 491 1.420532 TTGGTAGGAACCCGTTGCCT 61.421 55.000 0.00 0.00 46.16 4.75
490 492 0.537828 TTTGGTAGGAACCCGTTGCC 60.538 55.000 0.00 0.00 46.16 4.52
491 493 0.594602 GTTTGGTAGGAACCCGTTGC 59.405 55.000 0.00 0.00 46.16 4.17
492 494 2.148768 GAGTTTGGTAGGAACCCGTTG 58.851 52.381 0.00 0.00 46.16 4.10
493 495 1.770061 TGAGTTTGGTAGGAACCCGTT 59.230 47.619 0.00 0.00 46.16 4.44
494 496 1.346722 CTGAGTTTGGTAGGAACCCGT 59.653 52.381 0.00 0.00 46.16 5.28
495 497 1.338769 CCTGAGTTTGGTAGGAACCCG 60.339 57.143 0.00 0.00 46.16 5.28
496 498 1.982958 TCCTGAGTTTGGTAGGAACCC 59.017 52.381 0.00 0.00 46.16 4.11
497 499 2.638363 AGTCCTGAGTTTGGTAGGAACC 59.362 50.000 0.00 0.00 46.98 3.62
498 500 4.527427 AGTAGTCCTGAGTTTGGTAGGAAC 59.473 45.833 0.00 0.00 41.93 3.62
499 501 4.748701 AGTAGTCCTGAGTTTGGTAGGAA 58.251 43.478 0.00 0.00 41.93 3.36
500 502 4.399483 AGTAGTCCTGAGTTTGGTAGGA 57.601 45.455 0.00 0.00 38.25 2.94
501 503 5.507637 TCTAGTAGTCCTGAGTTTGGTAGG 58.492 45.833 0.00 0.00 0.00 3.18
502 504 6.094325 CACTCTAGTAGTCCTGAGTTTGGTAG 59.906 46.154 0.00 0.00 37.64 3.18
503 505 5.944599 CACTCTAGTAGTCCTGAGTTTGGTA 59.055 44.000 0.00 0.00 37.64 3.25
504 506 4.767928 CACTCTAGTAGTCCTGAGTTTGGT 59.232 45.833 0.00 0.00 37.64 3.67
505 507 4.158764 CCACTCTAGTAGTCCTGAGTTTGG 59.841 50.000 0.00 0.00 37.64 3.28
506 508 4.767928 ACCACTCTAGTAGTCCTGAGTTTG 59.232 45.833 0.00 0.00 37.64 2.93
507 509 4.767928 CACCACTCTAGTAGTCCTGAGTTT 59.232 45.833 0.00 0.00 37.64 2.66
508 510 4.337145 CACCACTCTAGTAGTCCTGAGTT 58.663 47.826 0.00 0.00 37.64 3.01
509 511 3.308545 CCACCACTCTAGTAGTCCTGAGT 60.309 52.174 0.00 0.00 39.98 3.41
510 512 3.283751 CCACCACTCTAGTAGTCCTGAG 58.716 54.545 0.00 0.00 35.76 3.35
511 513 2.648304 ACCACCACTCTAGTAGTCCTGA 59.352 50.000 0.00 0.00 35.76 3.86
512 514 3.018149 GACCACCACTCTAGTAGTCCTG 58.982 54.545 0.00 0.00 35.76 3.86
513 515 2.648304 TGACCACCACTCTAGTAGTCCT 59.352 50.000 0.00 0.00 35.76 3.85
514 516 2.754002 GTGACCACCACTCTAGTAGTCC 59.246 54.545 0.00 0.00 42.44 3.85
515 517 2.419324 CGTGACCACCACTCTAGTAGTC 59.581 54.545 0.00 0.00 43.53 2.59
516 518 2.039480 TCGTGACCACCACTCTAGTAGT 59.961 50.000 0.00 0.00 43.53 2.73
517 519 2.708051 TCGTGACCACCACTCTAGTAG 58.292 52.381 0.00 0.00 43.53 2.57
518 520 2.865119 TCGTGACCACCACTCTAGTA 57.135 50.000 0.00 0.00 43.53 1.82
519 521 1.887198 CTTCGTGACCACCACTCTAGT 59.113 52.381 0.00 0.00 43.53 2.57
520 522 1.202582 CCTTCGTGACCACCACTCTAG 59.797 57.143 0.00 0.00 43.53 2.43
521 523 1.254026 CCTTCGTGACCACCACTCTA 58.746 55.000 0.00 0.00 43.53 2.43
522 524 0.759436 ACCTTCGTGACCACCACTCT 60.759 55.000 0.00 0.00 43.53 3.24
523 525 0.600255 CACCTTCGTGACCACCACTC 60.600 60.000 0.00 0.00 43.14 3.51
524 526 1.445942 CACCTTCGTGACCACCACT 59.554 57.895 0.00 0.00 43.14 4.00
525 527 1.597027 CCACCTTCGTGACCACCAC 60.597 63.158 0.00 0.00 43.14 4.16
526 528 1.762858 TCCACCTTCGTGACCACCA 60.763 57.895 0.00 0.00 43.14 4.17
527 529 1.301479 GTCCACCTTCGTGACCACC 60.301 63.158 0.00 0.00 43.14 4.61
528 530 1.663702 CGTCCACCTTCGTGACCAC 60.664 63.158 0.00 0.00 43.14 4.16
529 531 1.829096 TCGTCCACCTTCGTGACCA 60.829 57.895 0.00 0.00 43.14 4.02
530 532 1.372623 GTCGTCCACCTTCGTGACC 60.373 63.158 0.00 0.00 43.14 4.02
531 533 1.728426 CGTCGTCCACCTTCGTGAC 60.728 63.158 0.00 0.00 43.14 3.67
532 534 2.640989 CGTCGTCCACCTTCGTGA 59.359 61.111 0.00 0.00 43.14 4.35
533 535 2.430244 CCGTCGTCCACCTTCGTG 60.430 66.667 0.00 0.00 39.91 4.35
534 536 4.353437 GCCGTCGTCCACCTTCGT 62.353 66.667 0.00 0.00 0.00 3.85
535 537 3.851845 TTGCCGTCGTCCACCTTCG 62.852 63.158 0.00 0.00 0.00 3.79
536 538 0.953960 AATTGCCGTCGTCCACCTTC 60.954 55.000 0.00 0.00 0.00 3.46
537 539 0.536460 AAATTGCCGTCGTCCACCTT 60.536 50.000 0.00 0.00 0.00 3.50
538 540 0.536460 AAAATTGCCGTCGTCCACCT 60.536 50.000 0.00 0.00 0.00 4.00
539 541 0.386731 CAAAATTGCCGTCGTCCACC 60.387 55.000 0.00 0.00 0.00 4.61
540 542 0.589223 TCAAAATTGCCGTCGTCCAC 59.411 50.000 0.00 0.00 0.00 4.02
541 543 0.871722 CTCAAAATTGCCGTCGTCCA 59.128 50.000 0.00 0.00 0.00 4.02
542 544 0.454452 GCTCAAAATTGCCGTCGTCC 60.454 55.000 0.00 0.00 0.00 4.79
543 545 0.454452 GGCTCAAAATTGCCGTCGTC 60.454 55.000 0.00 0.00 39.71 4.20
544 546 1.579429 GGCTCAAAATTGCCGTCGT 59.421 52.632 0.00 0.00 39.71 4.34
545 547 4.458164 GGCTCAAAATTGCCGTCG 57.542 55.556 0.00 0.00 39.71 5.12
549 551 1.291184 GCCGTTGGCTCAAAATTGCC 61.291 55.000 0.00 0.00 46.69 4.52
550 552 2.153039 GCCGTTGGCTCAAAATTGC 58.847 52.632 0.00 0.00 46.69 3.56
567 569 4.873129 TCGCGCTTCCTCGGATGC 62.873 66.667 5.56 12.41 40.49 3.91
568 570 2.956964 GTCGCGCTTCCTCGGATG 60.957 66.667 5.56 0.00 0.00 3.51
569 571 4.554363 CGTCGCGCTTCCTCGGAT 62.554 66.667 5.56 0.00 0.00 4.18
571 573 4.554363 ATCGTCGCGCTTCCTCGG 62.554 66.667 5.56 0.00 0.00 4.63
572 574 3.315521 CATCGTCGCGCTTCCTCG 61.316 66.667 5.56 3.02 0.00 4.63
573 575 2.663630 TAGCATCGTCGCGCTTCCTC 62.664 60.000 13.18 0.00 39.70 3.71
574 576 2.771639 TAGCATCGTCGCGCTTCCT 61.772 57.895 13.18 0.00 39.70 3.36
575 577 2.278596 TAGCATCGTCGCGCTTCC 60.279 61.111 13.18 0.00 39.70 3.46
576 578 2.906719 CGTAGCATCGTCGCGCTTC 61.907 63.158 13.18 8.25 39.70 3.86
577 579 2.949678 CGTAGCATCGTCGCGCTT 60.950 61.111 13.18 0.61 39.70 4.68
578 580 3.872728 TCGTAGCATCGTCGCGCT 61.873 61.111 5.56 12.65 42.34 5.92
579 581 3.669446 GTCGTAGCATCGTCGCGC 61.669 66.667 0.00 0.00 36.85 6.86
580 582 1.200474 ATTGTCGTAGCATCGTCGCG 61.200 55.000 0.00 0.00 36.85 5.87
581 583 0.498927 GATTGTCGTAGCATCGTCGC 59.501 55.000 0.00 0.00 0.00 5.19
582 584 1.822581 TGATTGTCGTAGCATCGTCG 58.177 50.000 0.00 0.00 0.00 5.12
583 585 4.778842 ATTTGATTGTCGTAGCATCGTC 57.221 40.909 0.00 0.00 0.00 4.20
584 586 4.745125 CCTATTTGATTGTCGTAGCATCGT 59.255 41.667 0.00 0.00 0.00 3.73
585 587 4.376413 GCCTATTTGATTGTCGTAGCATCG 60.376 45.833 0.00 0.00 0.00 3.84
586 588 4.752101 AGCCTATTTGATTGTCGTAGCATC 59.248 41.667 0.00 0.00 0.00 3.91
587 589 4.512944 CAGCCTATTTGATTGTCGTAGCAT 59.487 41.667 0.00 0.00 0.00 3.79
588 590 3.871006 CAGCCTATTTGATTGTCGTAGCA 59.129 43.478 0.00 0.00 0.00 3.49
589 591 3.303395 GCAGCCTATTTGATTGTCGTAGC 60.303 47.826 0.00 0.00 0.00 3.58
590 592 3.871006 TGCAGCCTATTTGATTGTCGTAG 59.129 43.478 0.00 0.00 0.00 3.51
591 593 3.867857 TGCAGCCTATTTGATTGTCGTA 58.132 40.909 0.00 0.00 0.00 3.43
592 594 2.710377 TGCAGCCTATTTGATTGTCGT 58.290 42.857 0.00 0.00 0.00 4.34
593 595 3.605461 CGATGCAGCCTATTTGATTGTCG 60.605 47.826 0.00 0.00 0.00 4.35
594 596 3.313526 ACGATGCAGCCTATTTGATTGTC 59.686 43.478 0.00 0.00 0.00 3.18
595 597 3.282021 ACGATGCAGCCTATTTGATTGT 58.718 40.909 0.00 0.00 0.00 2.71
596 598 3.976793 ACGATGCAGCCTATTTGATTG 57.023 42.857 0.00 0.00 0.00 2.67
597 599 3.494626 CGTACGATGCAGCCTATTTGATT 59.505 43.478 10.44 0.00 0.00 2.57
598 600 3.059884 CGTACGATGCAGCCTATTTGAT 58.940 45.455 10.44 0.00 0.00 2.57
599 601 2.469826 CGTACGATGCAGCCTATTTGA 58.530 47.619 10.44 0.00 0.00 2.69
600 602 1.526887 CCGTACGATGCAGCCTATTTG 59.473 52.381 18.76 0.00 0.00 2.32
601 603 1.411246 TCCGTACGATGCAGCCTATTT 59.589 47.619 18.76 0.00 0.00 1.40
602 604 1.037493 TCCGTACGATGCAGCCTATT 58.963 50.000 18.76 0.00 0.00 1.73
603 605 0.314302 GTCCGTACGATGCAGCCTAT 59.686 55.000 18.76 0.00 0.00 2.57
604 606 1.033202 TGTCCGTACGATGCAGCCTA 61.033 55.000 18.76 0.00 0.00 3.93
605 607 1.884075 TTGTCCGTACGATGCAGCCT 61.884 55.000 18.76 0.00 0.00 4.58
606 608 1.421410 CTTGTCCGTACGATGCAGCC 61.421 60.000 18.76 0.00 0.00 4.85
607 609 1.999051 CTTGTCCGTACGATGCAGC 59.001 57.895 18.76 0.00 0.00 5.25
608 610 1.742900 CGCTTGTCCGTACGATGCAG 61.743 60.000 18.76 8.39 0.00 4.41
609 611 1.803922 CGCTTGTCCGTACGATGCA 60.804 57.895 18.76 9.47 0.00 3.96
610 612 1.740043 GACGCTTGTCCGTACGATGC 61.740 60.000 18.76 9.85 42.24 3.91
611 613 0.455464 TGACGCTTGTCCGTACGATG 60.455 55.000 18.76 0.11 42.24 3.84
612 614 0.455633 GTGACGCTTGTCCGTACGAT 60.456 55.000 18.76 0.00 42.24 3.73
613 615 1.081906 GTGACGCTTGTCCGTACGA 60.082 57.895 18.76 0.00 42.24 3.43
614 616 2.084681 GGTGACGCTTGTCCGTACG 61.085 63.158 8.69 8.69 42.24 3.67
615 617 0.389426 ATGGTGACGCTTGTCCGTAC 60.389 55.000 0.00 0.00 42.24 3.67
616 618 0.108992 GATGGTGACGCTTGTCCGTA 60.109 55.000 0.00 0.00 42.24 4.02
617 619 1.374252 GATGGTGACGCTTGTCCGT 60.374 57.895 0.00 0.00 45.30 4.69
618 620 0.948623 TTGATGGTGACGCTTGTCCG 60.949 55.000 0.00 0.00 42.17 4.79
619 621 0.517316 GTTGATGGTGACGCTTGTCC 59.483 55.000 0.00 0.00 42.17 4.02
620 622 0.163788 CGTTGATGGTGACGCTTGTC 59.836 55.000 0.00 0.00 43.19 3.18
621 623 0.249699 TCGTTGATGGTGACGCTTGT 60.250 50.000 0.00 0.00 39.03 3.16
622 624 1.078709 ATCGTTGATGGTGACGCTTG 58.921 50.000 0.00 0.00 39.03 4.01
623 625 1.078709 CATCGTTGATGGTGACGCTT 58.921 50.000 0.00 0.00 39.03 4.68
624 626 0.246360 TCATCGTTGATGGTGACGCT 59.754 50.000 6.93 0.00 40.15 5.07
625 627 0.647410 CTCATCGTTGATGGTGACGC 59.353 55.000 6.93 0.00 40.15 5.19
626 628 2.278026 TCTCATCGTTGATGGTGACG 57.722 50.000 6.93 0.00 40.15 4.35
627 629 3.997021 AGTTTCTCATCGTTGATGGTGAC 59.003 43.478 6.93 2.43 40.15 3.67
628 630 4.271696 AGTTTCTCATCGTTGATGGTGA 57.728 40.909 6.93 3.80 40.15 4.02
629 631 4.031765 CGTAGTTTCTCATCGTTGATGGTG 59.968 45.833 6.93 1.72 40.15 4.17
630 632 4.174009 CGTAGTTTCTCATCGTTGATGGT 58.826 43.478 6.93 0.00 40.15 3.55
631 633 3.551890 CCGTAGTTTCTCATCGTTGATGG 59.448 47.826 6.93 0.00 40.15 3.51
632 634 4.421058 TCCGTAGTTTCTCATCGTTGATG 58.579 43.478 0.00 0.32 41.00 3.07
633 635 4.713824 TCCGTAGTTTCTCATCGTTGAT 57.286 40.909 0.00 0.00 0.00 2.57
634 636 4.216902 TCTTCCGTAGTTTCTCATCGTTGA 59.783 41.667 0.00 0.00 0.00 3.18
635 637 4.482386 TCTTCCGTAGTTTCTCATCGTTG 58.518 43.478 0.00 0.00 0.00 4.10
636 638 4.778534 TCTTCCGTAGTTTCTCATCGTT 57.221 40.909 0.00 0.00 0.00 3.85
637 639 4.985538 ATCTTCCGTAGTTTCTCATCGT 57.014 40.909 0.00 0.00 0.00 3.73
638 640 6.301687 TCTATCTTCCGTAGTTTCTCATCG 57.698 41.667 0.00 0.00 0.00 3.84
639 641 8.928270 TTTTCTATCTTCCGTAGTTTCTCATC 57.072 34.615 0.00 0.00 0.00 2.92
645 647 9.765795 CCTCATATTTTCTATCTTCCGTAGTTT 57.234 33.333 0.00 0.00 0.00 2.66
646 648 9.144298 TCCTCATATTTTCTATCTTCCGTAGTT 57.856 33.333 0.00 0.00 0.00 2.24
647 649 8.707796 TCCTCATATTTTCTATCTTCCGTAGT 57.292 34.615 0.00 0.00 0.00 2.73
648 650 7.757624 GCTCCTCATATTTTCTATCTTCCGTAG 59.242 40.741 0.00 0.00 0.00 3.51
649 651 7.451877 AGCTCCTCATATTTTCTATCTTCCGTA 59.548 37.037 0.00 0.00 0.00 4.02
650 652 6.268847 AGCTCCTCATATTTTCTATCTTCCGT 59.731 38.462 0.00 0.00 0.00 4.69
651 653 6.696411 AGCTCCTCATATTTTCTATCTTCCG 58.304 40.000 0.00 0.00 0.00 4.30
652 654 7.102993 GGAGCTCCTCATATTTTCTATCTTCC 58.897 42.308 26.25 0.00 31.08 3.46
653 655 7.038373 AGGGAGCTCCTCATATTTTCTATCTTC 60.038 40.741 31.36 8.67 44.06 2.87
654 656 6.791969 AGGGAGCTCCTCATATTTTCTATCTT 59.208 38.462 31.36 0.00 44.06 2.40
655 657 6.330218 AGGGAGCTCCTCATATTTTCTATCT 58.670 40.000 31.36 12.23 44.06 1.98
656 658 6.619329 AGGGAGCTCCTCATATTTTCTATC 57.381 41.667 31.36 10.06 44.06 2.08
670 672 2.473070 ACTTCTTTAGGAGGGAGCTCC 58.527 52.381 25.59 25.59 43.65 4.70
671 673 4.020128 TGAAACTTCTTTAGGAGGGAGCTC 60.020 45.833 4.71 4.71 0.00 4.09
672 674 3.910627 TGAAACTTCTTTAGGAGGGAGCT 59.089 43.478 0.00 0.00 0.00 4.09
673 675 4.004314 GTGAAACTTCTTTAGGAGGGAGC 58.996 47.826 0.00 0.00 0.00 4.70
674 676 4.041691 TGGTGAAACTTCTTTAGGAGGGAG 59.958 45.833 0.00 0.00 36.74 4.30
675 677 3.977999 TGGTGAAACTTCTTTAGGAGGGA 59.022 43.478 0.00 0.00 36.74 4.20
676 678 4.041691 TCTGGTGAAACTTCTTTAGGAGGG 59.958 45.833 0.00 0.00 36.74 4.30
677 679 5.228945 TCTGGTGAAACTTCTTTAGGAGG 57.771 43.478 0.00 0.00 36.74 4.30
678 680 9.103861 GAATATCTGGTGAAACTTCTTTAGGAG 57.896 37.037 0.00 0.00 36.74 3.69
679 681 8.826765 AGAATATCTGGTGAAACTTCTTTAGGA 58.173 33.333 0.00 0.00 36.74 2.94
680 682 9.454859 AAGAATATCTGGTGAAACTTCTTTAGG 57.545 33.333 0.00 0.00 36.74 2.69
682 684 9.793259 ACAAGAATATCTGGTGAAACTTCTTTA 57.207 29.630 0.00 0.00 36.74 1.85
683 685 8.697507 ACAAGAATATCTGGTGAAACTTCTTT 57.302 30.769 0.00 0.00 36.74 2.52
684 686 8.697507 AACAAGAATATCTGGTGAAACTTCTT 57.302 30.769 0.00 0.00 29.37 2.52
685 687 7.391833 GGAACAAGAATATCTGGTGAAACTTCT 59.608 37.037 0.00 0.00 29.37 2.85
686 688 7.362142 GGGAACAAGAATATCTGGTGAAACTTC 60.362 40.741 0.00 0.00 29.37 3.01
687 689 6.434340 GGGAACAAGAATATCTGGTGAAACTT 59.566 38.462 0.00 0.00 29.37 2.66
688 690 5.946377 GGGAACAAGAATATCTGGTGAAACT 59.054 40.000 0.00 0.00 29.37 2.66
689 691 5.163754 CGGGAACAAGAATATCTGGTGAAAC 60.164 44.000 0.00 0.00 29.37 2.78
690 692 4.941263 CGGGAACAAGAATATCTGGTGAAA 59.059 41.667 0.00 0.00 29.37 2.69
691 693 4.513442 CGGGAACAAGAATATCTGGTGAA 58.487 43.478 0.00 0.00 29.37 3.18
692 694 3.118408 CCGGGAACAAGAATATCTGGTGA 60.118 47.826 0.00 0.00 29.37 4.02
693 695 3.206150 CCGGGAACAAGAATATCTGGTG 58.794 50.000 0.00 0.00 29.37 4.17
694 696 2.172717 CCCGGGAACAAGAATATCTGGT 59.827 50.000 18.48 0.00 30.26 4.00
695 697 2.851195 CCCGGGAACAAGAATATCTGG 58.149 52.381 18.48 0.00 0.00 3.86
696 698 2.222027 GCCCGGGAACAAGAATATCTG 58.778 52.381 29.31 0.00 0.00 2.90
697 699 1.143073 GGCCCGGGAACAAGAATATCT 59.857 52.381 29.31 0.00 0.00 1.98
698 700 1.605753 GGCCCGGGAACAAGAATATC 58.394 55.000 29.31 0.12 0.00 1.63
699 701 0.179029 CGGCCCGGGAACAAGAATAT 60.179 55.000 29.31 0.00 0.00 1.28
700 702 1.222387 CGGCCCGGGAACAAGAATA 59.778 57.895 29.31 0.00 0.00 1.75
701 703 2.045340 CGGCCCGGGAACAAGAAT 60.045 61.111 29.31 0.00 0.00 2.40
702 704 2.340673 TTTCGGCCCGGGAACAAGAA 62.341 55.000 29.31 17.72 0.00 2.52
703 705 2.132089 ATTTCGGCCCGGGAACAAGA 62.132 55.000 29.31 12.31 0.00 3.02
704 706 1.677633 ATTTCGGCCCGGGAACAAG 60.678 57.895 29.31 9.86 0.00 3.16
705 707 1.974343 CATTTCGGCCCGGGAACAA 60.974 57.895 29.31 11.25 0.00 2.83
706 708 2.360600 CATTTCGGCCCGGGAACA 60.361 61.111 29.31 2.30 0.00 3.18
707 709 2.045731 TCATTTCGGCCCGGGAAC 60.046 61.111 29.31 15.89 0.00 3.62
708 710 1.843462 TTCTCATTTCGGCCCGGGAA 61.843 55.000 29.31 10.35 0.00 3.97
709 711 1.632018 ATTCTCATTTCGGCCCGGGA 61.632 55.000 29.31 1.71 0.00 5.14
710 712 1.152963 ATTCTCATTTCGGCCCGGG 60.153 57.895 19.09 19.09 0.00 5.73
711 713 0.179045 AGATTCTCATTTCGGCCCGG 60.179 55.000 1.90 0.00 0.00 5.73
712 714 1.202580 AGAGATTCTCATTTCGGCCCG 60.203 52.381 15.83 0.00 32.06 6.13
713 715 2.629336 AGAGATTCTCATTTCGGCCC 57.371 50.000 15.83 0.00 32.06 5.80
714 716 4.303282 GAGTAGAGATTCTCATTTCGGCC 58.697 47.826 15.83 0.00 32.06 6.13
715 717 4.038642 AGGAGTAGAGATTCTCATTTCGGC 59.961 45.833 15.83 0.00 32.06 5.54
716 718 5.782893 AGGAGTAGAGATTCTCATTTCGG 57.217 43.478 15.83 0.00 32.06 4.30
717 719 8.572185 TCATTAGGAGTAGAGATTCTCATTTCG 58.428 37.037 15.83 0.00 32.06 3.46
720 722 8.367156 GCTTCATTAGGAGTAGAGATTCTCATT 58.633 37.037 15.83 0.82 32.06 2.57
721 723 7.508636 TGCTTCATTAGGAGTAGAGATTCTCAT 59.491 37.037 15.83 1.44 32.06 2.90
722 724 6.836007 TGCTTCATTAGGAGTAGAGATTCTCA 59.164 38.462 15.83 0.00 32.06 3.27
723 725 7.283625 TGCTTCATTAGGAGTAGAGATTCTC 57.716 40.000 5.49 5.49 0.00 2.87
724 726 7.288810 CTGCTTCATTAGGAGTAGAGATTCT 57.711 40.000 0.00 0.00 37.53 2.40
743 745 1.608283 GGCGAAGACTACCAACTGCTT 60.608 52.381 0.00 0.00 0.00 3.91
759 761 1.293267 GGACGAAAATTGACCGGCGA 61.293 55.000 9.30 0.00 30.91 5.54
1089 1178 2.681778 CCTCAGCTCGTCCAGGGT 60.682 66.667 0.00 0.00 0.00 4.34
1736 1878 7.724951 TGATTATAACAAGATCATCCCAATGCA 59.275 33.333 0.00 0.00 32.58 3.96
1905 2076 4.762251 GCTTTGAACTGACCTAATTCCACT 59.238 41.667 0.00 0.00 0.00 4.00
2206 2447 4.471386 ACTTGGCACTACAGTCTGGAATAT 59.529 41.667 4.53 0.00 0.00 1.28
2231 2472 5.271598 TGGCCTCTTCCATTTTCAATATGT 58.728 37.500 3.32 0.00 0.00 2.29
2589 3170 5.715434 TCATAACAAAGCTTAACCAACCC 57.285 39.130 0.00 0.00 0.00 4.11
2638 3219 9.899661 TGCTAGTTAAACATGTTATATCCAGTT 57.100 29.630 12.39 0.00 0.00 3.16
2653 3234 7.584987 ACTTCATTGTGTGATGCTAGTTAAAC 58.415 34.615 0.00 0.00 36.54 2.01
2856 4748 2.749441 GGGCTGACCTTGCTGCTC 60.749 66.667 0.00 0.00 35.85 4.26
2908 4801 5.491982 GAGCATCTCCTTTTCAGTTTCCTA 58.508 41.667 0.00 0.00 0.00 2.94
3186 5079 0.617820 ACCCTCGGACATACCTTGCT 60.618 55.000 0.00 0.00 36.31 3.91
3187 5080 0.179081 GACCCTCGGACATACCTTGC 60.179 60.000 0.00 0.00 36.31 4.01
3468 5418 5.884232 CAGATGGAGAAATGAATCCTGAACA 59.116 40.000 0.00 0.00 36.50 3.18
3617 7874 6.267699 CCTTCCTAGGGAAAACAAAAACAGAT 59.732 38.462 9.46 0.00 41.54 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.