Multiple sequence alignment - TraesCS7A01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G098100 chr7A 100.000 3575 0 0 1 3575 60153804 60157378 0.000000e+00 6602
1 TraesCS7A01G098100 chr7A 99.309 3183 21 1 1 3183 60243675 60240494 0.000000e+00 5755
2 TraesCS7A01G098100 chr7A 98.707 2243 28 1 941 3183 120880746 120882987 0.000000e+00 3980
3 TraesCS7A01G098100 chrUn 99.466 3183 15 2 1 3183 86477414 86480594 0.000000e+00 5782
4 TraesCS7A01G098100 chrUn 99.376 2243 14 0 941 3183 186191116 186188874 0.000000e+00 4065
5 TraesCS7A01G098100 chrUn 99.613 1034 4 0 1 1034 221549942 221548909 0.000000e+00 1888
6 TraesCS7A01G098100 chrUn 99.226 1034 8 0 1 1034 186192940 186191907 0.000000e+00 1866
7 TraesCS7A01G098100 chrUn 100.000 258 0 0 3318 3575 396598905 396598648 8.980000e-131 477
8 TraesCS7A01G098100 chrUn 99.612 258 1 0 3318 3575 189423850 189423593 4.180000e-129 472
9 TraesCS7A01G098100 chrUn 99.612 258 1 0 3318 3575 396571782 396572039 4.180000e-129 472
10 TraesCS7A01G098100 chrUn 99.612 258 1 0 3318 3575 408824581 408824838 4.180000e-129 472
11 TraesCS7A01G098100 chr1A 99.277 3183 23 0 1 3183 112005548 112002366 0.000000e+00 5751
12 TraesCS7A01G098100 chr7D 99.287 2243 15 1 941 3183 579030033 579032274 0.000000e+00 4052
13 TraesCS7A01G098100 chr7B 99.153 2243 18 1 941 3183 743006363 743008604 0.000000e+00 4036
14 TraesCS7A01G098100 chr7B 98.839 1034 12 0 1 1034 743004538 743005571 0.000000e+00 1844
15 TraesCS7A01G098100 chr7B 100.000 258 0 0 3318 3575 716777667 716777924 8.980000e-131 477
16 TraesCS7A01G098100 chr4B 98.707 2243 26 2 941 3183 209271009 209268770 0.000000e+00 3978
17 TraesCS7A01G098100 chr4B 98.356 1034 17 0 1 1034 209272790 209271757 0.000000e+00 1816
18 TraesCS7A01G098100 chr1D 98.708 2244 23 6 941 3183 212467566 212465328 0.000000e+00 3978
19 TraesCS7A01G098100 chr6D 99.130 1034 9 0 1 1034 458963425 458964458 0.000000e+00 1860
20 TraesCS7A01G098100 chr6D 98.454 1035 14 2 1 1034 425979462 425978429 0.000000e+00 1821
21 TraesCS7A01G098100 chr3D 100.000 259 0 0 3317 3575 308526744 308527002 2.500000e-131 479
22 TraesCS7A01G098100 chr5A 100.000 258 0 0 3318 3575 16537640 16537897 8.980000e-131 477
23 TraesCS7A01G098100 chr4D 99.612 258 1 0 3318 3575 123468746 123469003 4.180000e-129 472
24 TraesCS7A01G098100 chr4D 99.612 258 1 0 3318 3575 353174215 353173958 4.180000e-129 472


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G098100 chr7A 60153804 60157378 3574 False 6602.0 6602 100.0000 1 3575 1 chr7A.!!$F1 3574
1 TraesCS7A01G098100 chr7A 60240494 60243675 3181 True 5755.0 5755 99.3090 1 3183 1 chr7A.!!$R1 3182
2 TraesCS7A01G098100 chr7A 120880746 120882987 2241 False 3980.0 3980 98.7070 941 3183 1 chr7A.!!$F2 2242
3 TraesCS7A01G098100 chrUn 86477414 86480594 3180 False 5782.0 5782 99.4660 1 3183 1 chrUn.!!$F1 3182
4 TraesCS7A01G098100 chrUn 186188874 186192940 4066 True 2965.5 4065 99.3010 1 3183 2 chrUn.!!$R4 3182
5 TraesCS7A01G098100 chrUn 221548909 221549942 1033 True 1888.0 1888 99.6130 1 1034 1 chrUn.!!$R2 1033
6 TraesCS7A01G098100 chr1A 112002366 112005548 3182 True 5751.0 5751 99.2770 1 3183 1 chr1A.!!$R1 3182
7 TraesCS7A01G098100 chr7D 579030033 579032274 2241 False 4052.0 4052 99.2870 941 3183 1 chr7D.!!$F1 2242
8 TraesCS7A01G098100 chr7B 743004538 743008604 4066 False 2940.0 4036 98.9960 1 3183 2 chr7B.!!$F2 3182
9 TraesCS7A01G098100 chr4B 209268770 209272790 4020 True 2897.0 3978 98.5315 1 3183 2 chr4B.!!$R1 3182
10 TraesCS7A01G098100 chr1D 212465328 212467566 2238 True 3978.0 3978 98.7080 941 3183 1 chr1D.!!$R1 2242
11 TraesCS7A01G098100 chr6D 458963425 458964458 1033 False 1860.0 1860 99.1300 1 1034 1 chr6D.!!$F1 1033
12 TraesCS7A01G098100 chr6D 425978429 425979462 1033 True 1821.0 1821 98.4540 1 1034 1 chr6D.!!$R1 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 554 7.148255 CGTGAGGAAATATCAATTTGGAACTCA 60.148 37.037 0.0 0.0 35.41 3.41 F
804 806 8.400184 TCAAAAGCATCCAGAAATATCATAGG 57.600 34.615 0.0 0.0 0.00 2.57 F
1374 3145 1.555533 GCCTTAGTAGAAGTGGGCAGT 59.444 52.381 0.0 0.0 39.38 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1374 3145 1.148273 GACTGTCCAACCAGTGCCA 59.852 57.895 0.0 0.0 45.46 4.92 R
1673 3446 2.610859 GGTCTCCCCCTCCTGCAA 60.611 66.667 0.0 0.0 0.00 4.08 R
3213 4988 0.185175 AGGGAAAACAGCGGAAGGTT 59.815 50.000 0.0 0.0 41.81 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
552 554 7.148255 CGTGAGGAAATATCAATTTGGAACTCA 60.148 37.037 0.00 0.00 35.41 3.41
804 806 8.400184 TCAAAAGCATCCAGAAATATCATAGG 57.600 34.615 0.00 0.00 0.00 2.57
1374 3145 1.555533 GCCTTAGTAGAAGTGGGCAGT 59.444 52.381 0.00 0.00 39.38 4.40
1383 3154 4.586235 GTGGGCAGTGGCACTGGT 62.586 66.667 39.74 10.94 46.01 4.00
1617 3388 1.855295 TATCACTTCCGGTACTGGCA 58.145 50.000 16.58 4.05 0.00 4.92
3183 4958 4.451900 AGTTTAGATAAAGCACCCCGATG 58.548 43.478 0.00 0.00 0.00 3.84
3184 4959 4.080526 AGTTTAGATAAAGCACCCCGATGT 60.081 41.667 0.00 0.00 0.00 3.06
3185 4960 2.332063 AGATAAAGCACCCCGATGTG 57.668 50.000 0.50 0.50 39.29 3.21
3186 4961 1.559682 AGATAAAGCACCCCGATGTGT 59.440 47.619 6.22 0.00 38.52 3.72
3187 4962 2.769663 AGATAAAGCACCCCGATGTGTA 59.230 45.455 6.22 0.00 38.52 2.90
3188 4963 3.199071 AGATAAAGCACCCCGATGTGTAA 59.801 43.478 6.22 0.00 38.52 2.41
3189 4964 2.279935 AAAGCACCCCGATGTGTAAA 57.720 45.000 6.22 0.00 38.52 2.01
3190 4965 2.279935 AAGCACCCCGATGTGTAAAA 57.720 45.000 6.22 0.00 38.52 1.52
3191 4966 1.530323 AGCACCCCGATGTGTAAAAC 58.470 50.000 6.22 0.00 38.52 2.43
3192 4967 0.524414 GCACCCCGATGTGTAAAACC 59.476 55.000 6.22 0.00 38.52 3.27
3193 4968 1.170442 CACCCCGATGTGTAAAACCC 58.830 55.000 0.00 0.00 0.00 4.11
3194 4969 1.069775 ACCCCGATGTGTAAAACCCT 58.930 50.000 0.00 0.00 0.00 4.34
3195 4970 1.271707 ACCCCGATGTGTAAAACCCTG 60.272 52.381 0.00 0.00 0.00 4.45
3196 4971 1.003812 CCCCGATGTGTAAAACCCTGA 59.996 52.381 0.00 0.00 0.00 3.86
3197 4972 2.356135 CCCGATGTGTAAAACCCTGAG 58.644 52.381 0.00 0.00 0.00 3.35
3198 4973 2.356135 CCGATGTGTAAAACCCTGAGG 58.644 52.381 0.00 0.00 40.04 3.86
3199 4974 2.027561 CCGATGTGTAAAACCCTGAGGA 60.028 50.000 0.00 0.00 36.73 3.71
3200 4975 3.558321 CCGATGTGTAAAACCCTGAGGAA 60.558 47.826 0.00 0.00 36.73 3.36
3201 4976 4.261801 CGATGTGTAAAACCCTGAGGAAT 58.738 43.478 0.00 0.00 36.73 3.01
3202 4977 4.094887 CGATGTGTAAAACCCTGAGGAATG 59.905 45.833 0.00 0.00 36.73 2.67
3203 4978 4.447138 TGTGTAAAACCCTGAGGAATGT 57.553 40.909 0.00 0.00 36.73 2.71
3204 4979 5.570205 TGTGTAAAACCCTGAGGAATGTA 57.430 39.130 0.00 0.00 36.73 2.29
3205 4980 5.556915 TGTGTAAAACCCTGAGGAATGTAG 58.443 41.667 0.00 0.00 36.73 2.74
3206 4981 5.072600 TGTGTAAAACCCTGAGGAATGTAGT 59.927 40.000 0.00 0.00 36.73 2.73
3207 4982 6.270463 TGTGTAAAACCCTGAGGAATGTAGTA 59.730 38.462 0.00 0.00 36.73 1.82
3208 4983 6.592994 GTGTAAAACCCTGAGGAATGTAGTAC 59.407 42.308 0.00 0.00 36.73 2.73
3209 4984 5.836024 AAAACCCTGAGGAATGTAGTACA 57.164 39.130 5.24 5.24 36.73 2.90
3210 4985 5.422214 AAACCCTGAGGAATGTAGTACAG 57.578 43.478 9.25 0.00 36.73 2.74
3211 4986 3.375699 ACCCTGAGGAATGTAGTACAGG 58.624 50.000 9.25 0.00 42.82 4.00
3212 4987 3.246021 ACCCTGAGGAATGTAGTACAGGT 60.246 47.826 9.25 5.08 41.98 4.00
3213 4988 4.016851 ACCCTGAGGAATGTAGTACAGGTA 60.017 45.833 9.25 0.00 41.98 3.08
3214 4989 4.960469 CCCTGAGGAATGTAGTACAGGTAA 59.040 45.833 9.25 0.00 41.98 2.85
3215 4990 5.163437 CCCTGAGGAATGTAGTACAGGTAAC 60.163 48.000 9.25 1.61 41.98 2.50
3216 4991 5.163437 CCTGAGGAATGTAGTACAGGTAACC 60.163 48.000 9.25 7.35 39.68 2.85
3217 4992 5.586877 TGAGGAATGTAGTACAGGTAACCT 58.413 41.667 9.25 11.45 37.17 3.50
3218 4993 6.021030 TGAGGAATGTAGTACAGGTAACCTT 58.979 40.000 9.25 0.00 37.17 3.50
3219 4994 6.154021 TGAGGAATGTAGTACAGGTAACCTTC 59.846 42.308 9.25 5.69 37.17 3.46
3220 4995 5.424573 AGGAATGTAGTACAGGTAACCTTCC 59.575 44.000 16.67 16.67 37.08 3.46
3221 4996 4.996788 ATGTAGTACAGGTAACCTTCCG 57.003 45.455 9.25 0.00 37.17 4.30
3222 4997 2.493278 TGTAGTACAGGTAACCTTCCGC 59.507 50.000 0.00 0.00 37.17 5.54
3223 4998 1.934410 AGTACAGGTAACCTTCCGCT 58.066 50.000 0.00 0.00 37.17 5.52
3224 4999 1.549170 AGTACAGGTAACCTTCCGCTG 59.451 52.381 0.00 0.00 37.17 5.18
3225 5000 1.274447 GTACAGGTAACCTTCCGCTGT 59.726 52.381 0.00 0.00 37.17 4.40
3226 5001 0.763035 ACAGGTAACCTTCCGCTGTT 59.237 50.000 0.00 0.00 37.17 3.16
3227 5002 1.142262 ACAGGTAACCTTCCGCTGTTT 59.858 47.619 0.00 0.00 37.17 2.83
3228 5003 2.227194 CAGGTAACCTTCCGCTGTTTT 58.773 47.619 0.00 0.00 37.17 2.43
3229 5004 2.225727 CAGGTAACCTTCCGCTGTTTTC 59.774 50.000 0.00 0.00 37.17 2.29
3230 5005 1.538512 GGTAACCTTCCGCTGTTTTCC 59.461 52.381 0.00 0.00 0.00 3.13
3231 5006 1.538512 GTAACCTTCCGCTGTTTTCCC 59.461 52.381 0.00 0.00 0.00 3.97
3232 5007 0.185175 AACCTTCCGCTGTTTTCCCT 59.815 50.000 0.00 0.00 0.00 4.20
3233 5008 0.185175 ACCTTCCGCTGTTTTCCCTT 59.815 50.000 0.00 0.00 0.00 3.95
3234 5009 1.422402 ACCTTCCGCTGTTTTCCCTTA 59.578 47.619 0.00 0.00 0.00 2.69
3235 5010 1.810755 CCTTCCGCTGTTTTCCCTTAC 59.189 52.381 0.00 0.00 0.00 2.34
3236 5011 1.810755 CTTCCGCTGTTTTCCCTTACC 59.189 52.381 0.00 0.00 0.00 2.85
3237 5012 1.061546 TCCGCTGTTTTCCCTTACCT 58.938 50.000 0.00 0.00 0.00 3.08
3238 5013 1.165270 CCGCTGTTTTCCCTTACCTG 58.835 55.000 0.00 0.00 0.00 4.00
3239 5014 1.544759 CCGCTGTTTTCCCTTACCTGT 60.545 52.381 0.00 0.00 0.00 4.00
3240 5015 2.289819 CCGCTGTTTTCCCTTACCTGTA 60.290 50.000 0.00 0.00 0.00 2.74
3241 5016 3.000727 CGCTGTTTTCCCTTACCTGTAG 58.999 50.000 0.00 0.00 0.00 2.74
3242 5017 2.747989 GCTGTTTTCCCTTACCTGTAGC 59.252 50.000 0.00 0.00 0.00 3.58
3243 5018 3.559384 GCTGTTTTCCCTTACCTGTAGCT 60.559 47.826 0.00 0.00 0.00 3.32
3244 5019 4.254492 CTGTTTTCCCTTACCTGTAGCTC 58.746 47.826 0.00 0.00 0.00 4.09
3245 5020 3.908103 TGTTTTCCCTTACCTGTAGCTCT 59.092 43.478 0.00 0.00 0.00 4.09
3246 5021 5.088730 TGTTTTCCCTTACCTGTAGCTCTA 58.911 41.667 0.00 0.00 0.00 2.43
3247 5022 5.724854 TGTTTTCCCTTACCTGTAGCTCTAT 59.275 40.000 0.00 0.00 0.00 1.98
3248 5023 6.214819 TGTTTTCCCTTACCTGTAGCTCTATT 59.785 38.462 0.00 0.00 0.00 1.73
3249 5024 6.886178 TTTCCCTTACCTGTAGCTCTATTT 57.114 37.500 0.00 0.00 0.00 1.40
3250 5025 7.983166 TTTCCCTTACCTGTAGCTCTATTTA 57.017 36.000 0.00 0.00 0.00 1.40
3251 5026 7.983166 TTCCCTTACCTGTAGCTCTATTTAA 57.017 36.000 0.00 0.00 0.00 1.52
3252 5027 8.562949 TTCCCTTACCTGTAGCTCTATTTAAT 57.437 34.615 0.00 0.00 0.00 1.40
3253 5028 7.963532 TCCCTTACCTGTAGCTCTATTTAATG 58.036 38.462 0.00 0.00 0.00 1.90
3254 5029 7.787904 TCCCTTACCTGTAGCTCTATTTAATGA 59.212 37.037 0.00 0.00 0.00 2.57
3255 5030 8.429641 CCCTTACCTGTAGCTCTATTTAATGAA 58.570 37.037 0.00 0.00 0.00 2.57
3256 5031 9.482627 CCTTACCTGTAGCTCTATTTAATGAAG 57.517 37.037 0.00 0.00 0.00 3.02
3257 5032 9.482627 CTTACCTGTAGCTCTATTTAATGAAGG 57.517 37.037 0.00 0.00 0.00 3.46
3258 5033 7.676683 ACCTGTAGCTCTATTTAATGAAGGA 57.323 36.000 0.00 0.00 0.00 3.36
3259 5034 7.501844 ACCTGTAGCTCTATTTAATGAAGGAC 58.498 38.462 0.00 0.00 0.00 3.85
3260 5035 7.345914 ACCTGTAGCTCTATTTAATGAAGGACT 59.654 37.037 0.00 0.00 0.00 3.85
3261 5036 8.207545 CCTGTAGCTCTATTTAATGAAGGACTT 58.792 37.037 0.00 0.00 0.00 3.01
3262 5037 9.606631 CTGTAGCTCTATTTAATGAAGGACTTT 57.393 33.333 0.00 0.00 0.00 2.66
3263 5038 9.959721 TGTAGCTCTATTTAATGAAGGACTTTT 57.040 29.630 0.00 0.00 0.00 2.27
3265 5040 8.512966 AGCTCTATTTAATGAAGGACTTTTCC 57.487 34.615 0.00 0.00 43.22 3.13
3266 5041 7.558081 AGCTCTATTTAATGAAGGACTTTTCCC 59.442 37.037 0.00 0.00 44.10 3.97
3267 5042 7.558081 GCTCTATTTAATGAAGGACTTTTCCCT 59.442 37.037 0.00 0.00 44.10 4.20
3268 5043 9.467796 CTCTATTTAATGAAGGACTTTTCCCTT 57.532 33.333 0.00 0.00 46.03 3.95
3272 5047 9.997172 ATTTAATGAAGGACTTTTCCCTTATCT 57.003 29.630 0.00 0.00 43.59 1.98
3273 5048 8.807948 TTAATGAAGGACTTTTCCCTTATCTG 57.192 34.615 0.00 0.00 43.59 2.90
3274 5049 6.642733 ATGAAGGACTTTTCCCTTATCTGA 57.357 37.500 0.00 0.00 43.59 3.27
3275 5050 6.448369 TGAAGGACTTTTCCCTTATCTGAA 57.552 37.500 0.00 0.00 43.59 3.02
3276 5051 6.848069 TGAAGGACTTTTCCCTTATCTGAAA 58.152 36.000 0.00 0.00 43.59 2.69
3277 5052 6.715264 TGAAGGACTTTTCCCTTATCTGAAAC 59.285 38.462 0.00 0.00 43.59 2.78
3278 5053 5.571285 AGGACTTTTCCCTTATCTGAAACC 58.429 41.667 0.00 0.00 44.10 3.27
3279 5054 5.074515 AGGACTTTTCCCTTATCTGAAACCA 59.925 40.000 0.00 0.00 44.10 3.67
3280 5055 5.952347 GGACTTTTCCCTTATCTGAAACCAT 59.048 40.000 0.00 0.00 35.57 3.55
3281 5056 7.036863 AGGACTTTTCCCTTATCTGAAACCATA 60.037 37.037 0.00 0.00 44.10 2.74
3282 5057 7.780271 GGACTTTTCCCTTATCTGAAACCATAT 59.220 37.037 0.00 0.00 35.57 1.78
3283 5058 9.190317 GACTTTTCCCTTATCTGAAACCATATT 57.810 33.333 0.00 0.00 30.64 1.28
3284 5059 9.547279 ACTTTTCCCTTATCTGAAACCATATTT 57.453 29.630 0.00 0.00 30.64 1.40
3287 5062 7.801716 TCCCTTATCTGAAACCATATTTTCG 57.198 36.000 0.00 0.00 38.17 3.46
3288 5063 7.570132 TCCCTTATCTGAAACCATATTTTCGA 58.430 34.615 0.00 0.00 38.17 3.71
3289 5064 7.715249 TCCCTTATCTGAAACCATATTTTCGAG 59.285 37.037 0.00 0.00 38.17 4.04
3290 5065 7.041098 CCCTTATCTGAAACCATATTTTCGAGG 60.041 40.741 0.00 0.00 38.17 4.63
3291 5066 7.715249 CCTTATCTGAAACCATATTTTCGAGGA 59.285 37.037 0.00 0.00 38.17 3.71
3292 5067 9.277783 CTTATCTGAAACCATATTTTCGAGGAT 57.722 33.333 0.00 0.00 38.17 3.24
3293 5068 6.925610 TCTGAAACCATATTTTCGAGGATG 57.074 37.500 0.00 0.00 38.17 3.51
3294 5069 6.414732 TCTGAAACCATATTTTCGAGGATGT 58.585 36.000 0.00 0.00 38.17 3.06
3295 5070 6.538742 TCTGAAACCATATTTTCGAGGATGTC 59.461 38.462 0.00 0.00 38.17 3.06
3296 5071 6.176896 TGAAACCATATTTTCGAGGATGTCA 58.823 36.000 0.00 0.00 38.17 3.58
3297 5072 6.657117 TGAAACCATATTTTCGAGGATGTCAA 59.343 34.615 0.00 0.00 38.17 3.18
3298 5073 7.175816 TGAAACCATATTTTCGAGGATGTCAAA 59.824 33.333 0.00 0.00 38.17 2.69
3299 5074 7.461182 AACCATATTTTCGAGGATGTCAAAA 57.539 32.000 0.00 0.00 0.00 2.44
3300 5075 7.461182 ACCATATTTTCGAGGATGTCAAAAA 57.539 32.000 0.00 0.00 0.00 1.94
3301 5076 8.066612 ACCATATTTTCGAGGATGTCAAAAAT 57.933 30.769 0.00 0.00 0.00 1.82
3302 5077 7.975616 ACCATATTTTCGAGGATGTCAAAAATG 59.024 33.333 0.00 0.00 0.00 2.32
3303 5078 7.436080 CCATATTTTCGAGGATGTCAAAAATGG 59.564 37.037 0.00 0.00 30.74 3.16
3304 5079 6.588719 ATTTTCGAGGATGTCAAAAATGGA 57.411 33.333 0.00 0.00 0.00 3.41
3305 5080 5.371115 TTTCGAGGATGTCAAAAATGGAC 57.629 39.130 0.00 0.00 35.83 4.02
3306 5081 4.286297 TCGAGGATGTCAAAAATGGACT 57.714 40.909 0.00 0.00 36.26 3.85
3307 5082 4.002982 TCGAGGATGTCAAAAATGGACTG 58.997 43.478 0.00 0.00 36.26 3.51
3308 5083 3.753272 CGAGGATGTCAAAAATGGACTGT 59.247 43.478 0.00 0.00 36.26 3.55
3309 5084 4.142816 CGAGGATGTCAAAAATGGACTGTC 60.143 45.833 0.00 0.00 36.26 3.51
3310 5085 4.990526 AGGATGTCAAAAATGGACTGTCT 58.009 39.130 7.85 0.00 36.26 3.41
3311 5086 5.388654 AGGATGTCAAAAATGGACTGTCTT 58.611 37.500 7.85 0.00 36.26 3.01
3312 5087 5.474876 AGGATGTCAAAAATGGACTGTCTTC 59.525 40.000 7.85 0.00 36.26 2.87
3313 5088 5.474876 GGATGTCAAAAATGGACTGTCTTCT 59.525 40.000 7.85 0.00 36.26 2.85
3314 5089 5.756195 TGTCAAAAATGGACTGTCTTCTG 57.244 39.130 7.85 0.00 36.26 3.02
3315 5090 4.580167 TGTCAAAAATGGACTGTCTTCTGG 59.420 41.667 7.85 0.00 36.26 3.86
3316 5091 4.821805 GTCAAAAATGGACTGTCTTCTGGA 59.178 41.667 7.85 0.00 32.54 3.86
3317 5092 4.821805 TCAAAAATGGACTGTCTTCTGGAC 59.178 41.667 7.85 0.00 44.70 4.02
3331 5106 7.440523 GTCTTCTGGACATTTCATTTAGTGT 57.559 36.000 0.00 0.00 43.94 3.55
3332 5107 7.875971 GTCTTCTGGACATTTCATTTAGTGTT 58.124 34.615 0.00 0.00 43.94 3.32
3333 5108 7.805071 GTCTTCTGGACATTTCATTTAGTGTTG 59.195 37.037 0.00 0.00 43.94 3.33
3334 5109 7.719193 TCTTCTGGACATTTCATTTAGTGTTGA 59.281 33.333 0.00 0.00 0.00 3.18
3335 5110 7.815840 TCTGGACATTTCATTTAGTGTTGAA 57.184 32.000 0.00 0.00 0.00 2.69
3336 5111 8.408043 TCTGGACATTTCATTTAGTGTTGAAT 57.592 30.769 0.00 0.00 32.27 2.57
3337 5112 9.513906 TCTGGACATTTCATTTAGTGTTGAATA 57.486 29.630 0.00 0.00 32.27 1.75
3340 5115 9.736023 GGACATTTCATTTAGTGTTGAATATCC 57.264 33.333 0.00 0.00 32.27 2.59
3353 5128 9.918630 AGTGTTGAATATCCAAGAAAAATGAAG 57.081 29.630 0.00 0.00 0.00 3.02
3354 5129 9.143631 GTGTTGAATATCCAAGAAAAATGAAGG 57.856 33.333 0.00 0.00 0.00 3.46
3355 5130 7.818930 TGTTGAATATCCAAGAAAAATGAAGGC 59.181 33.333 0.00 0.00 0.00 4.35
3356 5131 7.722949 TGAATATCCAAGAAAAATGAAGGCT 57.277 32.000 0.00 0.00 0.00 4.58
3357 5132 7.549839 TGAATATCCAAGAAAAATGAAGGCTG 58.450 34.615 0.00 0.00 0.00 4.85
3358 5133 4.813750 ATCCAAGAAAAATGAAGGCTGG 57.186 40.909 0.00 0.00 0.00 4.85
3359 5134 2.299867 TCCAAGAAAAATGAAGGCTGGC 59.700 45.455 0.00 0.00 0.00 4.85
3360 5135 2.037511 CCAAGAAAAATGAAGGCTGGCA 59.962 45.455 3.38 0.00 0.00 4.92
3361 5136 3.494749 CCAAGAAAAATGAAGGCTGGCAA 60.495 43.478 3.38 0.00 0.00 4.52
3362 5137 3.391506 AGAAAAATGAAGGCTGGCAAC 57.608 42.857 3.38 0.00 0.00 4.17
3363 5138 2.061028 GAAAAATGAAGGCTGGCAACG 58.939 47.619 3.38 0.00 42.51 4.10
3364 5139 0.319813 AAAATGAAGGCTGGCAACGC 60.320 50.000 3.38 0.00 42.51 4.84
3365 5140 2.476534 AAATGAAGGCTGGCAACGCG 62.477 55.000 3.53 3.53 42.51 6.01
3376 5151 4.394712 CAACGCGCCCTCCCTTCT 62.395 66.667 5.73 0.00 0.00 2.85
3377 5152 4.394712 AACGCGCCCTCCCTTCTG 62.395 66.667 5.73 0.00 0.00 3.02
3380 5155 3.470888 GCGCCCTCCCTTCTGCTA 61.471 66.667 0.00 0.00 0.00 3.49
3381 5156 2.501610 CGCCCTCCCTTCTGCTAC 59.498 66.667 0.00 0.00 0.00 3.58
3382 5157 2.911928 GCCCTCCCTTCTGCTACC 59.088 66.667 0.00 0.00 0.00 3.18
3383 5158 1.995626 GCCCTCCCTTCTGCTACCA 60.996 63.158 0.00 0.00 0.00 3.25
3384 5159 1.562672 GCCCTCCCTTCTGCTACCAA 61.563 60.000 0.00 0.00 0.00 3.67
3385 5160 1.216990 CCCTCCCTTCTGCTACCAAT 58.783 55.000 0.00 0.00 0.00 3.16
3386 5161 1.141858 CCCTCCCTTCTGCTACCAATC 59.858 57.143 0.00 0.00 0.00 2.67
3387 5162 1.839994 CCTCCCTTCTGCTACCAATCA 59.160 52.381 0.00 0.00 0.00 2.57
3388 5163 2.239654 CCTCCCTTCTGCTACCAATCAA 59.760 50.000 0.00 0.00 0.00 2.57
3389 5164 3.308402 CCTCCCTTCTGCTACCAATCAAA 60.308 47.826 0.00 0.00 0.00 2.69
3390 5165 3.944015 CTCCCTTCTGCTACCAATCAAAG 59.056 47.826 0.00 0.00 0.00 2.77
3391 5166 2.424956 CCCTTCTGCTACCAATCAAAGC 59.575 50.000 0.00 0.00 36.77 3.51
3392 5167 2.096496 CCTTCTGCTACCAATCAAAGCG 59.904 50.000 0.00 0.00 39.14 4.68
3393 5168 2.472695 TCTGCTACCAATCAAAGCGT 57.527 45.000 0.00 0.00 39.14 5.07
3394 5169 2.076100 TCTGCTACCAATCAAAGCGTG 58.924 47.619 0.00 0.00 39.14 5.34
3395 5170 1.131126 CTGCTACCAATCAAAGCGTGG 59.869 52.381 0.00 0.00 39.14 4.94
3396 5171 1.271108 TGCTACCAATCAAAGCGTGGA 60.271 47.619 0.00 0.00 39.14 4.02
3397 5172 1.810151 GCTACCAATCAAAGCGTGGAA 59.190 47.619 0.00 0.00 36.23 3.53
3398 5173 2.414161 GCTACCAATCAAAGCGTGGAAC 60.414 50.000 0.00 0.00 36.23 3.62
3399 5174 1.981256 ACCAATCAAAGCGTGGAACT 58.019 45.000 0.00 0.00 36.23 3.01
3400 5175 3.134574 ACCAATCAAAGCGTGGAACTA 57.865 42.857 0.00 0.00 36.23 2.24
3401 5176 3.482436 ACCAATCAAAGCGTGGAACTAA 58.518 40.909 0.00 0.00 36.23 2.24
3402 5177 3.886505 ACCAATCAAAGCGTGGAACTAAA 59.113 39.130 0.00 0.00 36.23 1.85
3403 5178 4.522789 ACCAATCAAAGCGTGGAACTAAAT 59.477 37.500 0.00 0.00 36.23 1.40
3404 5179 5.095490 CCAATCAAAGCGTGGAACTAAATC 58.905 41.667 0.00 0.00 34.05 2.17
3405 5180 5.106157 CCAATCAAAGCGTGGAACTAAATCT 60.106 40.000 0.00 0.00 34.05 2.40
3406 5181 5.803020 ATCAAAGCGTGGAACTAAATCTC 57.197 39.130 0.00 0.00 31.75 2.75
3407 5182 4.000988 TCAAAGCGTGGAACTAAATCTCC 58.999 43.478 0.00 0.00 31.75 3.71
3408 5183 3.983044 AAGCGTGGAACTAAATCTCCT 57.017 42.857 0.00 0.00 32.51 3.69
3409 5184 5.046878 TCAAAGCGTGGAACTAAATCTCCTA 60.047 40.000 0.00 0.00 32.51 2.94
3410 5185 5.615925 AAGCGTGGAACTAAATCTCCTAT 57.384 39.130 0.00 0.00 32.51 2.57
3411 5186 5.615925 AGCGTGGAACTAAATCTCCTATT 57.384 39.130 0.00 0.00 32.51 1.73
3412 5187 5.990668 AGCGTGGAACTAAATCTCCTATTT 58.009 37.500 0.00 0.00 32.51 1.40
3413 5188 6.415573 AGCGTGGAACTAAATCTCCTATTTT 58.584 36.000 0.00 0.00 32.51 1.82
3414 5189 6.884836 AGCGTGGAACTAAATCTCCTATTTTT 59.115 34.615 0.00 0.00 32.51 1.94
3415 5190 7.065923 AGCGTGGAACTAAATCTCCTATTTTTC 59.934 37.037 0.00 0.00 32.51 2.29
3416 5191 7.678927 GCGTGGAACTAAATCTCCTATTTTTCC 60.679 40.741 0.00 0.00 32.54 3.13
3417 5192 7.335924 CGTGGAACTAAATCTCCTATTTTTCCA 59.664 37.037 10.46 10.46 36.41 3.53
3418 5193 9.020731 GTGGAACTAAATCTCCTATTTTTCCAA 57.979 33.333 13.97 2.55 38.53 3.53
3419 5194 9.243105 TGGAACTAAATCTCCTATTTTTCCAAG 57.757 33.333 11.49 0.00 36.10 3.61
3420 5195 9.244292 GGAACTAAATCTCCTATTTTTCCAAGT 57.756 33.333 8.20 0.00 32.35 3.16
3422 5197 9.807921 AACTAAATCTCCTATTTTTCCAAGTGA 57.192 29.630 0.00 0.00 0.00 3.41
3423 5198 9.807921 ACTAAATCTCCTATTTTTCCAAGTGAA 57.192 29.630 0.00 0.00 0.00 3.18
3426 5201 6.575162 TCTCCTATTTTTCCAAGTGAAAGC 57.425 37.500 0.00 0.00 43.57 3.51
3427 5202 5.476945 TCTCCTATTTTTCCAAGTGAAAGCC 59.523 40.000 0.00 0.00 43.57 4.35
3428 5203 4.217550 TCCTATTTTTCCAAGTGAAAGCCG 59.782 41.667 0.00 0.00 43.57 5.52
3429 5204 2.880963 TTTTTCCAAGTGAAAGCCGG 57.119 45.000 0.00 0.00 43.57 6.13
3430 5205 1.036707 TTTTCCAAGTGAAAGCCGGG 58.963 50.000 2.18 0.00 43.57 5.73
3431 5206 1.460273 TTTCCAAGTGAAAGCCGGGC 61.460 55.000 12.11 12.11 38.04 6.13
3432 5207 2.282462 CCAAGTGAAAGCCGGGCT 60.282 61.111 17.69 17.69 42.56 5.19
3433 5208 2.629656 CCAAGTGAAAGCCGGGCTG 61.630 63.158 24.63 8.84 39.62 4.85
3434 5209 1.600636 CAAGTGAAAGCCGGGCTGA 60.601 57.895 24.63 6.95 39.62 4.26
3435 5210 1.600916 AAGTGAAAGCCGGGCTGAC 60.601 57.895 24.63 18.78 39.62 3.51
3436 5211 3.423154 GTGAAAGCCGGGCTGACG 61.423 66.667 24.63 0.00 39.62 4.35
3437 5212 3.621805 TGAAAGCCGGGCTGACGA 61.622 61.111 24.63 4.13 39.62 4.20
3438 5213 2.358247 GAAAGCCGGGCTGACGAA 60.358 61.111 24.63 0.00 39.62 3.85
3439 5214 1.745489 GAAAGCCGGGCTGACGAAT 60.745 57.895 24.63 1.78 39.62 3.34
3440 5215 0.461339 GAAAGCCGGGCTGACGAATA 60.461 55.000 24.63 0.00 39.62 1.75
3441 5216 0.035820 AAAGCCGGGCTGACGAATAA 60.036 50.000 24.63 0.00 39.62 1.40
3442 5217 0.743345 AAGCCGGGCTGACGAATAAC 60.743 55.000 24.63 0.00 39.62 1.89
3443 5218 2.178235 GCCGGGCTGACGAATAACC 61.178 63.158 12.87 0.00 35.47 2.85
3444 5219 1.219664 CCGGGCTGACGAATAACCA 59.780 57.895 0.00 0.00 35.47 3.67
3445 5220 0.391927 CCGGGCTGACGAATAACCAA 60.392 55.000 0.00 0.00 35.47 3.67
3446 5221 0.725117 CGGGCTGACGAATAACCAAC 59.275 55.000 0.00 0.00 35.47 3.77
3447 5222 1.092348 GGGCTGACGAATAACCAACC 58.908 55.000 0.00 0.00 0.00 3.77
3448 5223 1.092348 GGCTGACGAATAACCAACCC 58.908 55.000 0.00 0.00 0.00 4.11
3449 5224 0.725117 GCTGACGAATAACCAACCCG 59.275 55.000 0.00 0.00 0.00 5.28
3450 5225 0.725117 CTGACGAATAACCAACCCGC 59.275 55.000 0.00 0.00 0.00 6.13
3451 5226 0.035036 TGACGAATAACCAACCCGCA 59.965 50.000 0.00 0.00 0.00 5.69
3452 5227 1.158434 GACGAATAACCAACCCGCAA 58.842 50.000 0.00 0.00 0.00 4.85
3453 5228 1.741145 GACGAATAACCAACCCGCAAT 59.259 47.619 0.00 0.00 0.00 3.56
3454 5229 1.470890 ACGAATAACCAACCCGCAATG 59.529 47.619 0.00 0.00 0.00 2.82
3455 5230 1.740585 CGAATAACCAACCCGCAATGA 59.259 47.619 0.00 0.00 0.00 2.57
3456 5231 2.162608 CGAATAACCAACCCGCAATGAA 59.837 45.455 0.00 0.00 0.00 2.57
3457 5232 3.181491 CGAATAACCAACCCGCAATGAAT 60.181 43.478 0.00 0.00 0.00 2.57
3458 5233 4.035792 CGAATAACCAACCCGCAATGAATA 59.964 41.667 0.00 0.00 0.00 1.75
3459 5234 5.449314 CGAATAACCAACCCGCAATGAATAA 60.449 40.000 0.00 0.00 0.00 1.40
3460 5235 3.866883 AACCAACCCGCAATGAATAAG 57.133 42.857 0.00 0.00 0.00 1.73
3461 5236 2.099405 ACCAACCCGCAATGAATAAGG 58.901 47.619 0.00 0.00 0.00 2.69
3462 5237 2.291282 ACCAACCCGCAATGAATAAGGA 60.291 45.455 0.00 0.00 0.00 3.36
3463 5238 2.757868 CCAACCCGCAATGAATAAGGAA 59.242 45.455 0.00 0.00 0.00 3.36
3464 5239 3.181487 CCAACCCGCAATGAATAAGGAAG 60.181 47.826 0.00 0.00 0.00 3.46
3465 5240 2.654863 ACCCGCAATGAATAAGGAAGG 58.345 47.619 0.00 0.00 0.00 3.46
3466 5241 2.025321 ACCCGCAATGAATAAGGAAGGT 60.025 45.455 0.00 0.00 0.00 3.50
3467 5242 3.201266 ACCCGCAATGAATAAGGAAGGTA 59.799 43.478 0.00 0.00 0.00 3.08
3468 5243 4.141251 ACCCGCAATGAATAAGGAAGGTAT 60.141 41.667 0.00 0.00 0.00 2.73
3469 5244 5.072600 ACCCGCAATGAATAAGGAAGGTATA 59.927 40.000 0.00 0.00 0.00 1.47
3470 5245 5.643777 CCCGCAATGAATAAGGAAGGTATAG 59.356 44.000 0.00 0.00 0.00 1.31
3471 5246 6.231211 CCGCAATGAATAAGGAAGGTATAGT 58.769 40.000 0.00 0.00 0.00 2.12
3472 5247 7.383687 CCGCAATGAATAAGGAAGGTATAGTA 58.616 38.462 0.00 0.00 0.00 1.82
3473 5248 7.876068 CCGCAATGAATAAGGAAGGTATAGTAA 59.124 37.037 0.00 0.00 0.00 2.24
3474 5249 9.436957 CGCAATGAATAAGGAAGGTATAGTAAT 57.563 33.333 0.00 0.00 0.00 1.89
3489 5264 9.333961 AGGTATAGTAATGCTATGAATAACCCA 57.666 33.333 1.01 0.00 40.41 4.51
3490 5265 9.601217 GGTATAGTAATGCTATGAATAACCCAG 57.399 37.037 1.01 0.00 40.41 4.45
3495 5270 8.035394 AGTAATGCTATGAATAACCCAGTATCG 58.965 37.037 0.00 0.00 0.00 2.92
3496 5271 6.605471 ATGCTATGAATAACCCAGTATCGA 57.395 37.500 0.00 0.00 0.00 3.59
3497 5272 6.413783 TGCTATGAATAACCCAGTATCGAA 57.586 37.500 0.00 0.00 0.00 3.71
3498 5273 7.004555 TGCTATGAATAACCCAGTATCGAAT 57.995 36.000 0.00 0.00 0.00 3.34
3499 5274 8.129496 TGCTATGAATAACCCAGTATCGAATA 57.871 34.615 0.00 0.00 0.00 1.75
3500 5275 8.033038 TGCTATGAATAACCCAGTATCGAATAC 58.967 37.037 0.00 0.00 35.99 1.89
3501 5276 8.251721 GCTATGAATAACCCAGTATCGAATACT 58.748 37.037 0.00 0.00 46.56 2.12
3525 5300 7.815068 ACTGGTAATAATATAAGCAGAAGAGCG 59.185 37.037 7.66 0.00 40.34 5.03
3526 5301 7.667557 TGGTAATAATATAAGCAGAAGAGCGT 58.332 34.615 0.00 0.00 40.15 5.07
3527 5302 8.148351 TGGTAATAATATAAGCAGAAGAGCGTT 58.852 33.333 0.00 0.00 40.15 4.84
3528 5303 8.648968 GGTAATAATATAAGCAGAAGAGCGTTC 58.351 37.037 0.00 0.00 40.15 3.95
3529 5304 9.413048 GTAATAATATAAGCAGAAGAGCGTTCT 57.587 33.333 0.00 0.00 40.15 3.01
3530 5305 8.527567 AATAATATAAGCAGAAGAGCGTTCTC 57.472 34.615 0.98 0.00 40.15 2.87
3531 5306 2.656560 TAAGCAGAAGAGCGTTCTCC 57.343 50.000 0.98 0.00 40.22 3.71
3532 5307 0.036858 AAGCAGAAGAGCGTTCTCCC 60.037 55.000 0.98 0.00 40.22 4.30
3533 5308 1.807573 GCAGAAGAGCGTTCTCCCG 60.808 63.158 0.98 0.00 40.22 5.14
3534 5309 1.587054 CAGAAGAGCGTTCTCCCGT 59.413 57.895 0.98 0.00 40.22 5.28
3535 5310 0.734253 CAGAAGAGCGTTCTCCCGTG 60.734 60.000 0.98 0.00 40.22 4.94
3536 5311 2.048127 AAGAGCGTTCTCCCGTGC 60.048 61.111 0.98 0.00 40.22 5.34
3537 5312 2.493907 GAAGAGCGTTCTCCCGTGCT 62.494 60.000 0.98 0.00 40.22 4.40
3538 5313 2.048127 GAGCGTTCTCCCGTGCTT 60.048 61.111 0.00 0.00 37.91 3.91
3539 5314 2.048127 AGCGTTCTCCCGTGCTTC 60.048 61.111 0.00 0.00 32.89 3.86
3540 5315 3.119096 GCGTTCTCCCGTGCTTCC 61.119 66.667 0.00 0.00 0.00 3.46
3541 5316 2.342279 CGTTCTCCCGTGCTTCCA 59.658 61.111 0.00 0.00 0.00 3.53
3542 5317 1.738099 CGTTCTCCCGTGCTTCCAG 60.738 63.158 0.00 0.00 0.00 3.86
3543 5318 1.671742 GTTCTCCCGTGCTTCCAGA 59.328 57.895 0.00 0.00 0.00 3.86
3544 5319 0.670854 GTTCTCCCGTGCTTCCAGAC 60.671 60.000 0.00 0.00 0.00 3.51
3545 5320 1.118965 TTCTCCCGTGCTTCCAGACA 61.119 55.000 0.00 0.00 0.00 3.41
3546 5321 0.904865 TCTCCCGTGCTTCCAGACAT 60.905 55.000 0.00 0.00 0.00 3.06
3547 5322 0.742281 CTCCCGTGCTTCCAGACATG 60.742 60.000 0.00 0.00 0.00 3.21
3548 5323 2.401766 CCCGTGCTTCCAGACATGC 61.402 63.158 0.00 0.00 0.00 4.06
3549 5324 1.376424 CCGTGCTTCCAGACATGCT 60.376 57.895 0.00 0.00 0.00 3.79
3550 5325 1.642037 CCGTGCTTCCAGACATGCTG 61.642 60.000 9.40 9.40 44.49 4.41
3560 5335 1.857965 AGACATGCTGAGCTCTACCA 58.142 50.000 16.19 9.46 0.00 3.25
3561 5336 2.182827 AGACATGCTGAGCTCTACCAA 58.817 47.619 16.19 0.00 0.00 3.67
3562 5337 2.770802 AGACATGCTGAGCTCTACCAAT 59.229 45.455 16.19 2.54 0.00 3.16
3563 5338 3.199508 AGACATGCTGAGCTCTACCAATT 59.800 43.478 16.19 1.00 0.00 2.32
3564 5339 3.944015 GACATGCTGAGCTCTACCAATTT 59.056 43.478 16.19 0.00 0.00 1.82
3565 5340 4.338879 ACATGCTGAGCTCTACCAATTTT 58.661 39.130 16.19 0.00 0.00 1.82
3566 5341 4.768968 ACATGCTGAGCTCTACCAATTTTT 59.231 37.500 16.19 0.00 0.00 1.94
3567 5342 4.771590 TGCTGAGCTCTACCAATTTTTG 57.228 40.909 16.19 0.00 0.00 2.44
3568 5343 4.144297 TGCTGAGCTCTACCAATTTTTGT 58.856 39.130 16.19 0.00 0.00 2.83
3569 5344 5.312895 TGCTGAGCTCTACCAATTTTTGTA 58.687 37.500 16.19 0.00 0.00 2.41
3570 5345 5.181245 TGCTGAGCTCTACCAATTTTTGTAC 59.819 40.000 16.19 0.00 0.00 2.90
3571 5346 5.181245 GCTGAGCTCTACCAATTTTTGTACA 59.819 40.000 16.19 0.00 0.00 2.90
3572 5347 6.127897 GCTGAGCTCTACCAATTTTTGTACAT 60.128 38.462 16.19 0.00 0.00 2.29
3573 5348 7.575720 GCTGAGCTCTACCAATTTTTGTACATT 60.576 37.037 16.19 0.00 0.00 2.71
3574 5349 7.816640 TGAGCTCTACCAATTTTTGTACATTC 58.183 34.615 16.19 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1374 3145 1.148273 GACTGTCCAACCAGTGCCA 59.852 57.895 0.00 0.00 45.46 4.92
1505 3276 4.154195 GTCCACGCATGTTGAAGATAGTTT 59.846 41.667 0.00 0.00 0.00 2.66
1617 3388 6.183360 CGGTTAATAACATTGTAATTGCCCCT 60.183 38.462 5.45 0.00 0.00 4.79
1673 3446 2.610859 GGTCTCCCCCTCCTGCAA 60.611 66.667 0.00 0.00 0.00 4.08
3092 4867 2.122056 AGGTACCCTCAACCGCCT 59.878 61.111 8.74 0.00 42.15 5.52
3183 4958 5.557866 ACTACATTCCTCAGGGTTTTACAC 58.442 41.667 0.00 0.00 0.00 2.90
3184 4959 5.836024 ACTACATTCCTCAGGGTTTTACA 57.164 39.130 0.00 0.00 0.00 2.41
3185 4960 6.704310 TGTACTACATTCCTCAGGGTTTTAC 58.296 40.000 0.00 0.00 0.00 2.01
3186 4961 6.070424 CCTGTACTACATTCCTCAGGGTTTTA 60.070 42.308 0.00 0.00 38.81 1.52
3187 4962 5.280521 CCTGTACTACATTCCTCAGGGTTTT 60.281 44.000 0.00 0.00 38.81 2.43
3188 4963 4.225267 CCTGTACTACATTCCTCAGGGTTT 59.775 45.833 0.00 0.00 38.81 3.27
3189 4964 3.775316 CCTGTACTACATTCCTCAGGGTT 59.225 47.826 0.00 0.00 38.81 4.11
3190 4965 3.246021 ACCTGTACTACATTCCTCAGGGT 60.246 47.826 12.54 0.00 44.39 4.34
3191 4966 3.375699 ACCTGTACTACATTCCTCAGGG 58.624 50.000 12.54 0.00 44.39 4.45
3192 4967 5.163437 GGTTACCTGTACTACATTCCTCAGG 60.163 48.000 7.36 7.36 45.24 3.86
3193 4968 5.657302 AGGTTACCTGTACTACATTCCTCAG 59.343 44.000 1.74 0.00 29.57 3.35
3194 4969 5.586877 AGGTTACCTGTACTACATTCCTCA 58.413 41.667 1.74 0.00 29.57 3.86
3195 4970 6.406737 GGAAGGTTACCTGTACTACATTCCTC 60.407 46.154 3.99 0.00 44.04 3.71
3196 4971 5.424573 GGAAGGTTACCTGTACTACATTCCT 59.575 44.000 3.99 6.60 44.04 3.36
3197 4972 5.668471 GGAAGGTTACCTGTACTACATTCC 58.332 45.833 3.99 0.50 42.08 3.01
3198 4973 5.346522 CGGAAGGTTACCTGTACTACATTC 58.653 45.833 3.99 0.00 32.13 2.67
3199 4974 4.382362 GCGGAAGGTTACCTGTACTACATT 60.382 45.833 3.99 0.00 32.13 2.71
3200 4975 3.131755 GCGGAAGGTTACCTGTACTACAT 59.868 47.826 3.99 0.00 32.13 2.29
3201 4976 2.493278 GCGGAAGGTTACCTGTACTACA 59.507 50.000 3.99 0.00 32.13 2.74
3202 4977 2.757314 AGCGGAAGGTTACCTGTACTAC 59.243 50.000 3.99 0.00 40.01 2.73
3203 4978 2.756760 CAGCGGAAGGTTACCTGTACTA 59.243 50.000 3.99 0.00 41.81 1.82
3204 4979 1.549170 CAGCGGAAGGTTACCTGTACT 59.451 52.381 3.99 0.00 41.81 2.73
3205 4980 1.274447 ACAGCGGAAGGTTACCTGTAC 59.726 52.381 3.99 0.00 41.81 2.90
3206 4981 1.636148 ACAGCGGAAGGTTACCTGTA 58.364 50.000 3.99 0.00 41.81 2.74
3207 4982 0.763035 AACAGCGGAAGGTTACCTGT 59.237 50.000 3.99 0.00 41.81 4.00
3208 4983 1.892209 AAACAGCGGAAGGTTACCTG 58.108 50.000 3.99 0.00 41.81 4.00
3209 4984 2.501261 GAAAACAGCGGAAGGTTACCT 58.499 47.619 0.00 0.00 41.81 3.08
3210 4985 1.538512 GGAAAACAGCGGAAGGTTACC 59.461 52.381 0.00 0.00 41.81 2.85
3211 4986 1.538512 GGGAAAACAGCGGAAGGTTAC 59.461 52.381 0.00 0.00 41.81 2.50
3212 4987 1.422402 AGGGAAAACAGCGGAAGGTTA 59.578 47.619 0.00 0.00 41.81 2.85
3213 4988 0.185175 AGGGAAAACAGCGGAAGGTT 59.815 50.000 0.00 0.00 41.81 3.50
3214 4989 0.185175 AAGGGAAAACAGCGGAAGGT 59.815 50.000 0.00 0.00 46.81 3.50
3215 4990 1.810755 GTAAGGGAAAACAGCGGAAGG 59.189 52.381 0.00 0.00 0.00 3.46
3216 4991 1.810755 GGTAAGGGAAAACAGCGGAAG 59.189 52.381 0.00 0.00 0.00 3.46
3217 4992 1.422402 AGGTAAGGGAAAACAGCGGAA 59.578 47.619 0.00 0.00 0.00 4.30
3218 4993 1.061546 AGGTAAGGGAAAACAGCGGA 58.938 50.000 0.00 0.00 0.00 5.54
3219 4994 1.165270 CAGGTAAGGGAAAACAGCGG 58.835 55.000 0.00 0.00 0.00 5.52
3220 4995 1.892209 ACAGGTAAGGGAAAACAGCG 58.108 50.000 0.00 0.00 0.00 5.18
3221 4996 2.747989 GCTACAGGTAAGGGAAAACAGC 59.252 50.000 0.00 0.00 0.00 4.40
3222 4997 4.020128 AGAGCTACAGGTAAGGGAAAACAG 60.020 45.833 0.00 0.00 0.00 3.16
3223 4998 3.908103 AGAGCTACAGGTAAGGGAAAACA 59.092 43.478 0.00 0.00 0.00 2.83
3224 4999 4.554960 AGAGCTACAGGTAAGGGAAAAC 57.445 45.455 0.00 0.00 0.00 2.43
3225 5000 6.886178 AATAGAGCTACAGGTAAGGGAAAA 57.114 37.500 0.00 0.00 0.00 2.29
3226 5001 6.886178 AAATAGAGCTACAGGTAAGGGAAA 57.114 37.500 0.00 0.00 0.00 3.13
3227 5002 7.983166 TTAAATAGAGCTACAGGTAAGGGAA 57.017 36.000 0.00 0.00 0.00 3.97
3228 5003 7.787904 TCATTAAATAGAGCTACAGGTAAGGGA 59.212 37.037 0.00 0.00 0.00 4.20
3229 5004 7.963532 TCATTAAATAGAGCTACAGGTAAGGG 58.036 38.462 0.00 0.00 0.00 3.95
3230 5005 9.482627 CTTCATTAAATAGAGCTACAGGTAAGG 57.517 37.037 0.00 0.00 0.00 2.69
3231 5006 9.482627 CCTTCATTAAATAGAGCTACAGGTAAG 57.517 37.037 0.00 0.00 0.00 2.34
3232 5007 9.209048 TCCTTCATTAAATAGAGCTACAGGTAA 57.791 33.333 0.00 0.00 0.00 2.85
3233 5008 8.639761 GTCCTTCATTAAATAGAGCTACAGGTA 58.360 37.037 0.00 0.00 0.00 3.08
3234 5009 7.345914 AGTCCTTCATTAAATAGAGCTACAGGT 59.654 37.037 0.00 0.00 0.00 4.00
3235 5010 7.731054 AGTCCTTCATTAAATAGAGCTACAGG 58.269 38.462 0.00 0.00 0.00 4.00
3236 5011 9.606631 AAAGTCCTTCATTAAATAGAGCTACAG 57.393 33.333 0.00 0.00 0.00 2.74
3237 5012 9.959721 AAAAGTCCTTCATTAAATAGAGCTACA 57.040 29.630 0.00 0.00 0.00 2.74
3239 5014 9.614792 GGAAAAGTCCTTCATTAAATAGAGCTA 57.385 33.333 0.00 0.00 41.24 3.32
3240 5015 7.558081 GGGAAAAGTCCTTCATTAAATAGAGCT 59.442 37.037 0.00 0.00 44.28 4.09
3241 5016 7.558081 AGGGAAAAGTCCTTCATTAAATAGAGC 59.442 37.037 0.00 0.00 44.28 4.09
3242 5017 9.467796 AAGGGAAAAGTCCTTCATTAAATAGAG 57.532 33.333 0.00 0.00 44.28 2.43
3246 5021 9.997172 AGATAAGGGAAAAGTCCTTCATTAAAT 57.003 29.630 0.00 0.00 43.02 1.40
3247 5022 9.243105 CAGATAAGGGAAAAGTCCTTCATTAAA 57.757 33.333 0.00 0.00 43.02 1.52
3248 5023 8.611257 TCAGATAAGGGAAAAGTCCTTCATTAA 58.389 33.333 0.00 0.00 43.02 1.40
3249 5024 8.158025 TCAGATAAGGGAAAAGTCCTTCATTA 57.842 34.615 0.00 0.00 43.02 1.90
3250 5025 7.032598 TCAGATAAGGGAAAAGTCCTTCATT 57.967 36.000 0.00 0.00 43.02 2.57
3251 5026 6.642733 TCAGATAAGGGAAAAGTCCTTCAT 57.357 37.500 0.00 0.00 43.02 2.57
3252 5027 6.448369 TTCAGATAAGGGAAAAGTCCTTCA 57.552 37.500 0.00 0.00 43.02 3.02
3253 5028 6.151312 GGTTTCAGATAAGGGAAAAGTCCTTC 59.849 42.308 0.00 0.00 43.02 3.46
3254 5029 6.010850 GGTTTCAGATAAGGGAAAAGTCCTT 58.989 40.000 0.00 0.00 44.28 3.36
3255 5030 5.074515 TGGTTTCAGATAAGGGAAAAGTCCT 59.925 40.000 0.00 0.00 44.28 3.85
3256 5031 5.321927 TGGTTTCAGATAAGGGAAAAGTCC 58.678 41.667 0.00 0.00 44.10 3.85
3257 5032 8.753497 ATATGGTTTCAGATAAGGGAAAAGTC 57.247 34.615 0.00 0.00 35.03 3.01
3258 5033 9.547279 AAATATGGTTTCAGATAAGGGAAAAGT 57.453 29.630 0.00 0.00 35.03 2.66
3261 5036 8.682710 CGAAAATATGGTTTCAGATAAGGGAAA 58.317 33.333 1.83 0.00 37.35 3.13
3262 5037 8.050325 TCGAAAATATGGTTTCAGATAAGGGAA 58.950 33.333 1.83 0.00 37.35 3.97
3263 5038 7.570132 TCGAAAATATGGTTTCAGATAAGGGA 58.430 34.615 1.83 0.00 37.35 4.20
3264 5039 7.041098 CCTCGAAAATATGGTTTCAGATAAGGG 60.041 40.741 1.83 0.00 37.35 3.95
3265 5040 7.715249 TCCTCGAAAATATGGTTTCAGATAAGG 59.285 37.037 1.83 0.00 37.35 2.69
3266 5041 8.662781 TCCTCGAAAATATGGTTTCAGATAAG 57.337 34.615 1.83 0.00 37.35 1.73
3267 5042 9.056005 CATCCTCGAAAATATGGTTTCAGATAA 57.944 33.333 1.83 0.00 37.35 1.75
3268 5043 8.210946 ACATCCTCGAAAATATGGTTTCAGATA 58.789 33.333 1.83 0.00 37.35 1.98
3269 5044 7.056635 ACATCCTCGAAAATATGGTTTCAGAT 58.943 34.615 1.83 0.00 37.35 2.90
3270 5045 6.414732 ACATCCTCGAAAATATGGTTTCAGA 58.585 36.000 1.83 0.14 37.35 3.27
3271 5046 6.316140 TGACATCCTCGAAAATATGGTTTCAG 59.684 38.462 1.83 0.00 37.35 3.02
3272 5047 6.176896 TGACATCCTCGAAAATATGGTTTCA 58.823 36.000 1.83 0.00 37.35 2.69
3273 5048 6.677781 TGACATCCTCGAAAATATGGTTTC 57.322 37.500 0.00 0.00 34.71 2.78
3274 5049 7.461182 TTTGACATCCTCGAAAATATGGTTT 57.539 32.000 0.00 0.00 0.00 3.27
3275 5050 7.461182 TTTTGACATCCTCGAAAATATGGTT 57.539 32.000 0.00 0.00 30.33 3.67
3276 5051 7.461182 TTTTTGACATCCTCGAAAATATGGT 57.539 32.000 0.00 0.00 37.34 3.55
3277 5052 7.436080 CCATTTTTGACATCCTCGAAAATATGG 59.564 37.037 9.85 9.85 45.61 2.74
3278 5053 8.190122 TCCATTTTTGACATCCTCGAAAATATG 58.810 33.333 7.61 0.00 45.61 1.78
3279 5054 8.190784 GTCCATTTTTGACATCCTCGAAAATAT 58.809 33.333 7.61 0.00 45.61 1.28
3280 5055 7.393234 AGTCCATTTTTGACATCCTCGAAAATA 59.607 33.333 7.61 0.00 45.61 1.40
3282 5057 5.534654 AGTCCATTTTTGACATCCTCGAAAA 59.465 36.000 0.00 0.00 43.55 2.29
3283 5058 5.048782 CAGTCCATTTTTGACATCCTCGAAA 60.049 40.000 0.00 0.00 35.15 3.46
3284 5059 4.455533 CAGTCCATTTTTGACATCCTCGAA 59.544 41.667 0.00 0.00 35.15 3.71
3285 5060 4.002982 CAGTCCATTTTTGACATCCTCGA 58.997 43.478 0.00 0.00 35.15 4.04
3286 5061 3.753272 ACAGTCCATTTTTGACATCCTCG 59.247 43.478 0.00 0.00 35.15 4.63
3287 5062 5.006386 AGACAGTCCATTTTTGACATCCTC 58.994 41.667 0.00 0.00 35.15 3.71
3288 5063 4.990526 AGACAGTCCATTTTTGACATCCT 58.009 39.130 0.00 0.00 35.15 3.24
3289 5064 5.474876 AGAAGACAGTCCATTTTTGACATCC 59.525 40.000 0.00 0.00 35.15 3.51
3290 5065 6.376978 CAGAAGACAGTCCATTTTTGACATC 58.623 40.000 0.00 0.00 35.15 3.06
3291 5066 5.242393 CCAGAAGACAGTCCATTTTTGACAT 59.758 40.000 0.00 0.00 35.15 3.06
3292 5067 4.580167 CCAGAAGACAGTCCATTTTTGACA 59.420 41.667 0.00 0.00 35.15 3.58
3293 5068 4.821805 TCCAGAAGACAGTCCATTTTTGAC 59.178 41.667 0.00 0.00 0.00 3.18
3294 5069 4.821805 GTCCAGAAGACAGTCCATTTTTGA 59.178 41.667 0.00 0.00 45.55 2.69
3295 5070 5.113502 GTCCAGAAGACAGTCCATTTTTG 57.886 43.478 0.00 0.00 45.55 2.44
3307 5082 7.440523 ACACTAAATGAAATGTCCAGAAGAC 57.559 36.000 0.00 0.00 46.51 3.01
3308 5083 7.719193 TCAACACTAAATGAAATGTCCAGAAGA 59.281 33.333 0.00 0.00 0.00 2.87
3309 5084 7.874940 TCAACACTAAATGAAATGTCCAGAAG 58.125 34.615 0.00 0.00 0.00 2.85
3310 5085 7.815840 TCAACACTAAATGAAATGTCCAGAA 57.184 32.000 0.00 0.00 0.00 3.02
3311 5086 7.815840 TTCAACACTAAATGAAATGTCCAGA 57.184 32.000 0.00 0.00 32.89 3.86
3314 5089 9.736023 GGATATTCAACACTAAATGAAATGTCC 57.264 33.333 0.00 0.00 38.88 4.02
3327 5102 9.918630 CTTCATTTTTCTTGGATATTCAACACT 57.081 29.630 0.00 0.00 0.00 3.55
3328 5103 9.143631 CCTTCATTTTTCTTGGATATTCAACAC 57.856 33.333 0.00 0.00 0.00 3.32
3329 5104 7.818930 GCCTTCATTTTTCTTGGATATTCAACA 59.181 33.333 0.00 0.00 0.00 3.33
3330 5105 8.037166 AGCCTTCATTTTTCTTGGATATTCAAC 58.963 33.333 0.00 0.00 0.00 3.18
3331 5106 8.036575 CAGCCTTCATTTTTCTTGGATATTCAA 58.963 33.333 0.00 0.00 0.00 2.69
3332 5107 7.364056 CCAGCCTTCATTTTTCTTGGATATTCA 60.364 37.037 0.00 0.00 0.00 2.57
3333 5108 6.982724 CCAGCCTTCATTTTTCTTGGATATTC 59.017 38.462 0.00 0.00 0.00 1.75
3334 5109 6.631088 GCCAGCCTTCATTTTTCTTGGATATT 60.631 38.462 0.00 0.00 0.00 1.28
3335 5110 5.163374 GCCAGCCTTCATTTTTCTTGGATAT 60.163 40.000 0.00 0.00 0.00 1.63
3336 5111 4.160252 GCCAGCCTTCATTTTTCTTGGATA 59.840 41.667 0.00 0.00 0.00 2.59
3337 5112 3.055602 GCCAGCCTTCATTTTTCTTGGAT 60.056 43.478 0.00 0.00 0.00 3.41
3338 5113 2.299867 GCCAGCCTTCATTTTTCTTGGA 59.700 45.455 0.00 0.00 0.00 3.53
3339 5114 2.037511 TGCCAGCCTTCATTTTTCTTGG 59.962 45.455 0.00 0.00 0.00 3.61
3340 5115 3.389925 TGCCAGCCTTCATTTTTCTTG 57.610 42.857 0.00 0.00 0.00 3.02
3341 5116 3.732212 GTTGCCAGCCTTCATTTTTCTT 58.268 40.909 0.00 0.00 0.00 2.52
3342 5117 2.288395 CGTTGCCAGCCTTCATTTTTCT 60.288 45.455 0.00 0.00 0.00 2.52
3343 5118 2.061028 CGTTGCCAGCCTTCATTTTTC 58.939 47.619 0.00 0.00 0.00 2.29
3344 5119 1.873486 GCGTTGCCAGCCTTCATTTTT 60.873 47.619 0.00 0.00 0.00 1.94
3345 5120 0.319813 GCGTTGCCAGCCTTCATTTT 60.320 50.000 0.00 0.00 0.00 1.82
3346 5121 1.290009 GCGTTGCCAGCCTTCATTT 59.710 52.632 0.00 0.00 0.00 2.32
3347 5122 2.964978 GCGTTGCCAGCCTTCATT 59.035 55.556 0.00 0.00 0.00 2.57
3348 5123 3.434319 CGCGTTGCCAGCCTTCAT 61.434 61.111 0.00 0.00 0.00 2.57
3359 5134 4.394712 AGAAGGGAGGGCGCGTTG 62.395 66.667 8.43 0.00 0.00 4.10
3360 5135 4.394712 CAGAAGGGAGGGCGCGTT 62.395 66.667 8.43 0.00 0.00 4.84
3363 5138 3.470888 TAGCAGAAGGGAGGGCGC 61.471 66.667 0.00 0.00 0.00 6.53
3364 5139 2.501610 GTAGCAGAAGGGAGGGCG 59.498 66.667 0.00 0.00 0.00 6.13
3365 5140 1.562672 TTGGTAGCAGAAGGGAGGGC 61.563 60.000 0.00 0.00 0.00 5.19
3366 5141 1.141858 GATTGGTAGCAGAAGGGAGGG 59.858 57.143 0.00 0.00 0.00 4.30
3367 5142 1.839994 TGATTGGTAGCAGAAGGGAGG 59.160 52.381 0.00 0.00 0.00 4.30
3368 5143 3.634397 TTGATTGGTAGCAGAAGGGAG 57.366 47.619 0.00 0.00 0.00 4.30
3369 5144 3.873801 GCTTTGATTGGTAGCAGAAGGGA 60.874 47.826 0.00 0.00 35.05 4.20
3370 5145 2.424956 GCTTTGATTGGTAGCAGAAGGG 59.575 50.000 0.00 0.00 35.05 3.95
3371 5146 2.096496 CGCTTTGATTGGTAGCAGAAGG 59.904 50.000 0.00 0.00 34.62 3.46
3372 5147 2.744202 ACGCTTTGATTGGTAGCAGAAG 59.256 45.455 0.00 0.57 34.62 2.85
3373 5148 2.483877 CACGCTTTGATTGGTAGCAGAA 59.516 45.455 0.00 0.00 34.62 3.02
3374 5149 2.076100 CACGCTTTGATTGGTAGCAGA 58.924 47.619 0.00 0.00 34.62 4.26
3375 5150 1.131126 CCACGCTTTGATTGGTAGCAG 59.869 52.381 0.00 0.00 34.62 4.24
3376 5151 1.164411 CCACGCTTTGATTGGTAGCA 58.836 50.000 0.00 0.00 34.62 3.49
3377 5152 1.448985 TCCACGCTTTGATTGGTAGC 58.551 50.000 0.00 0.00 0.00 3.58
3378 5153 3.074412 AGTTCCACGCTTTGATTGGTAG 58.926 45.455 0.00 0.00 0.00 3.18
3379 5154 3.134574 AGTTCCACGCTTTGATTGGTA 57.865 42.857 0.00 0.00 0.00 3.25
3380 5155 1.981256 AGTTCCACGCTTTGATTGGT 58.019 45.000 0.00 0.00 0.00 3.67
3381 5156 4.497473 TTTAGTTCCACGCTTTGATTGG 57.503 40.909 0.00 0.00 0.00 3.16
3382 5157 5.942872 AGATTTAGTTCCACGCTTTGATTG 58.057 37.500 0.00 0.00 0.00 2.67
3383 5158 5.123979 GGAGATTTAGTTCCACGCTTTGATT 59.876 40.000 0.00 0.00 33.55 2.57
3384 5159 4.636206 GGAGATTTAGTTCCACGCTTTGAT 59.364 41.667 0.00 0.00 33.55 2.57
3385 5160 4.000988 GGAGATTTAGTTCCACGCTTTGA 58.999 43.478 0.00 0.00 33.55 2.69
3386 5161 4.003648 AGGAGATTTAGTTCCACGCTTTG 58.996 43.478 0.00 0.00 35.88 2.77
3387 5162 4.287766 AGGAGATTTAGTTCCACGCTTT 57.712 40.909 0.00 0.00 35.88 3.51
3388 5163 3.983044 AGGAGATTTAGTTCCACGCTT 57.017 42.857 0.00 0.00 35.88 4.68
3389 5164 5.615925 AATAGGAGATTTAGTTCCACGCT 57.384 39.130 0.00 0.00 35.88 5.07
3390 5165 6.679327 AAAATAGGAGATTTAGTTCCACGC 57.321 37.500 0.00 0.00 35.88 5.34
3391 5166 7.335924 TGGAAAAATAGGAGATTTAGTTCCACG 59.664 37.037 10.20 0.00 35.05 4.94
3392 5167 8.575649 TGGAAAAATAGGAGATTTAGTTCCAC 57.424 34.615 10.20 0.00 35.05 4.02
3393 5168 9.243105 CTTGGAAAAATAGGAGATTTAGTTCCA 57.757 33.333 10.20 10.20 36.70 3.53
3394 5169 9.244292 ACTTGGAAAAATAGGAGATTTAGTTCC 57.756 33.333 6.56 6.56 32.54 3.62
3396 5171 9.807921 TCACTTGGAAAAATAGGAGATTTAGTT 57.192 29.630 0.00 0.00 0.00 2.24
3397 5172 9.807921 TTCACTTGGAAAAATAGGAGATTTAGT 57.192 29.630 0.00 0.00 30.98 2.24
3400 5175 8.090831 GCTTTCACTTGGAAAAATAGGAGATTT 58.909 33.333 0.00 0.00 44.52 2.17
3401 5176 7.310052 GGCTTTCACTTGGAAAAATAGGAGATT 60.310 37.037 0.00 0.00 44.52 2.40
3402 5177 6.153510 GGCTTTCACTTGGAAAAATAGGAGAT 59.846 38.462 0.00 0.00 44.52 2.75
3403 5178 5.476945 GGCTTTCACTTGGAAAAATAGGAGA 59.523 40.000 0.00 0.00 44.52 3.71
3404 5179 5.619981 CGGCTTTCACTTGGAAAAATAGGAG 60.620 44.000 0.00 0.00 44.52 3.69
3405 5180 4.217550 CGGCTTTCACTTGGAAAAATAGGA 59.782 41.667 0.00 0.00 44.52 2.94
3406 5181 4.485163 CGGCTTTCACTTGGAAAAATAGG 58.515 43.478 0.00 0.00 44.52 2.57
3407 5182 4.485163 CCGGCTTTCACTTGGAAAAATAG 58.515 43.478 0.00 0.00 44.52 1.73
3408 5183 3.257127 CCCGGCTTTCACTTGGAAAAATA 59.743 43.478 0.00 0.00 44.52 1.40
3409 5184 2.037121 CCCGGCTTTCACTTGGAAAAAT 59.963 45.455 0.00 0.00 44.52 1.82
3410 5185 1.410882 CCCGGCTTTCACTTGGAAAAA 59.589 47.619 0.00 0.00 44.52 1.94
3411 5186 1.036707 CCCGGCTTTCACTTGGAAAA 58.963 50.000 0.00 0.00 44.52 2.29
3412 5187 1.460273 GCCCGGCTTTCACTTGGAAA 61.460 55.000 0.71 0.00 43.07 3.13
3413 5188 1.901464 GCCCGGCTTTCACTTGGAA 60.901 57.895 0.71 0.00 0.00 3.53
3414 5189 2.282180 GCCCGGCTTTCACTTGGA 60.282 61.111 0.71 0.00 0.00 3.53
3415 5190 2.282462 AGCCCGGCTTTCACTTGG 60.282 61.111 5.94 0.00 33.89 3.61
3416 5191 1.600636 TCAGCCCGGCTTTCACTTG 60.601 57.895 9.99 0.00 36.40 3.16
3417 5192 1.600916 GTCAGCCCGGCTTTCACTT 60.601 57.895 9.99 0.00 36.40 3.16
3418 5193 2.032681 GTCAGCCCGGCTTTCACT 59.967 61.111 9.99 0.00 36.40 3.41
3419 5194 3.423154 CGTCAGCCCGGCTTTCAC 61.423 66.667 9.99 6.02 36.40 3.18
3420 5195 2.463589 ATTCGTCAGCCCGGCTTTCA 62.464 55.000 9.99 0.00 36.40 2.69
3421 5196 0.461339 TATTCGTCAGCCCGGCTTTC 60.461 55.000 9.99 4.83 36.40 2.62
3422 5197 0.035820 TTATTCGTCAGCCCGGCTTT 60.036 50.000 9.99 0.00 36.40 3.51
3423 5198 0.743345 GTTATTCGTCAGCCCGGCTT 60.743 55.000 9.99 0.00 36.40 4.35
3424 5199 1.153429 GTTATTCGTCAGCCCGGCT 60.153 57.895 5.94 5.94 40.77 5.52
3425 5200 2.178235 GGTTATTCGTCAGCCCGGC 61.178 63.158 0.00 0.00 0.00 6.13
3426 5201 0.391927 TTGGTTATTCGTCAGCCCGG 60.392 55.000 0.00 0.00 0.00 5.73
3427 5202 0.725117 GTTGGTTATTCGTCAGCCCG 59.275 55.000 0.00 0.00 0.00 6.13
3428 5203 1.092348 GGTTGGTTATTCGTCAGCCC 58.908 55.000 0.00 0.00 0.00 5.19
3429 5204 1.092348 GGGTTGGTTATTCGTCAGCC 58.908 55.000 0.00 0.00 0.00 4.85
3430 5205 0.725117 CGGGTTGGTTATTCGTCAGC 59.275 55.000 0.00 0.00 0.00 4.26
3431 5206 0.725117 GCGGGTTGGTTATTCGTCAG 59.275 55.000 0.00 0.00 0.00 3.51
3432 5207 0.035036 TGCGGGTTGGTTATTCGTCA 59.965 50.000 0.00 0.00 0.00 4.35
3433 5208 1.158434 TTGCGGGTTGGTTATTCGTC 58.842 50.000 0.00 0.00 0.00 4.20
3434 5209 1.470890 CATTGCGGGTTGGTTATTCGT 59.529 47.619 0.00 0.00 0.00 3.85
3435 5210 1.740585 TCATTGCGGGTTGGTTATTCG 59.259 47.619 0.00 0.00 0.00 3.34
3436 5211 3.859411 TTCATTGCGGGTTGGTTATTC 57.141 42.857 0.00 0.00 0.00 1.75
3437 5212 5.163457 CCTTATTCATTGCGGGTTGGTTATT 60.163 40.000 0.00 0.00 0.00 1.40
3438 5213 4.340950 CCTTATTCATTGCGGGTTGGTTAT 59.659 41.667 0.00 0.00 0.00 1.89
3439 5214 3.697045 CCTTATTCATTGCGGGTTGGTTA 59.303 43.478 0.00 0.00 0.00 2.85
3440 5215 2.495669 CCTTATTCATTGCGGGTTGGTT 59.504 45.455 0.00 0.00 0.00 3.67
3441 5216 2.099405 CCTTATTCATTGCGGGTTGGT 58.901 47.619 0.00 0.00 0.00 3.67
3442 5217 2.374184 TCCTTATTCATTGCGGGTTGG 58.626 47.619 0.00 0.00 0.00 3.77
3443 5218 3.181487 CCTTCCTTATTCATTGCGGGTTG 60.181 47.826 0.00 0.00 0.00 3.77
3444 5219 3.023832 CCTTCCTTATTCATTGCGGGTT 58.976 45.455 0.00 0.00 0.00 4.11
3445 5220 2.025321 ACCTTCCTTATTCATTGCGGGT 60.025 45.455 0.00 0.00 0.00 5.28
3446 5221 2.654863 ACCTTCCTTATTCATTGCGGG 58.345 47.619 0.00 0.00 0.00 6.13
3447 5222 6.231211 ACTATACCTTCCTTATTCATTGCGG 58.769 40.000 0.00 0.00 0.00 5.69
3448 5223 8.827177 TTACTATACCTTCCTTATTCATTGCG 57.173 34.615 0.00 0.00 0.00 4.85
3463 5238 9.333961 TGGGTTATTCATAGCATTACTATACCT 57.666 33.333 0.00 0.00 39.71 3.08
3464 5239 9.601217 CTGGGTTATTCATAGCATTACTATACC 57.399 37.037 0.00 0.00 39.71 2.73
3469 5244 8.035394 CGATACTGGGTTATTCATAGCATTACT 58.965 37.037 0.00 0.00 0.00 2.24
3470 5245 8.033038 TCGATACTGGGTTATTCATAGCATTAC 58.967 37.037 0.00 0.00 0.00 1.89
3471 5246 8.129496 TCGATACTGGGTTATTCATAGCATTA 57.871 34.615 0.00 0.00 0.00 1.90
3472 5247 7.004555 TCGATACTGGGTTATTCATAGCATT 57.995 36.000 0.00 0.00 0.00 3.56
3473 5248 6.605471 TCGATACTGGGTTATTCATAGCAT 57.395 37.500 0.00 0.00 0.00 3.79
3474 5249 6.413783 TTCGATACTGGGTTATTCATAGCA 57.586 37.500 0.00 0.00 0.00 3.49
3475 5250 8.251721 AGTATTCGATACTGGGTTATTCATAGC 58.748 37.037 6.70 0.00 44.07 2.97
3499 5274 7.815068 CGCTCTTCTGCTTATATTATTACCAGT 59.185 37.037 0.00 0.00 0.00 4.00
3500 5275 7.815068 ACGCTCTTCTGCTTATATTATTACCAG 59.185 37.037 0.00 0.00 0.00 4.00
3501 5276 7.667557 ACGCTCTTCTGCTTATATTATTACCA 58.332 34.615 0.00 0.00 0.00 3.25
3502 5277 8.535690 AACGCTCTTCTGCTTATATTATTACC 57.464 34.615 0.00 0.00 0.00 2.85
3503 5278 9.413048 AGAACGCTCTTCTGCTTATATTATTAC 57.587 33.333 0.00 0.00 0.00 1.89
3504 5279 9.627395 GAGAACGCTCTTCTGCTTATATTATTA 57.373 33.333 0.00 0.00 38.16 0.98
3505 5280 7.600752 GGAGAACGCTCTTCTGCTTATATTATT 59.399 37.037 5.56 0.00 41.06 1.40
3506 5281 7.093992 GGAGAACGCTCTTCTGCTTATATTAT 58.906 38.462 5.56 0.00 41.06 1.28
3507 5282 6.448006 GGAGAACGCTCTTCTGCTTATATTA 58.552 40.000 5.56 0.00 41.06 0.98
3508 5283 5.293560 GGAGAACGCTCTTCTGCTTATATT 58.706 41.667 5.56 0.00 41.06 1.28
3509 5284 4.262249 GGGAGAACGCTCTTCTGCTTATAT 60.262 45.833 10.86 0.00 41.06 0.86
3510 5285 3.068307 GGGAGAACGCTCTTCTGCTTATA 59.932 47.826 10.86 0.00 41.06 0.98
3511 5286 2.159028 GGGAGAACGCTCTTCTGCTTAT 60.159 50.000 10.86 0.00 41.06 1.73
3512 5287 1.204941 GGGAGAACGCTCTTCTGCTTA 59.795 52.381 10.86 0.00 41.06 3.09
3513 5288 0.036858 GGGAGAACGCTCTTCTGCTT 60.037 55.000 10.86 0.00 41.06 3.91
3514 5289 1.594310 GGGAGAACGCTCTTCTGCT 59.406 57.895 10.86 0.00 41.06 4.24
3515 5290 1.807573 CGGGAGAACGCTCTTCTGC 60.808 63.158 0.00 4.50 41.06 4.26
3516 5291 0.734253 CACGGGAGAACGCTCTTCTG 60.734 60.000 1.13 1.13 39.29 3.02
3517 5292 1.587054 CACGGGAGAACGCTCTTCT 59.413 57.895 0.00 0.00 41.06 2.85
3518 5293 2.095252 GCACGGGAGAACGCTCTTC 61.095 63.158 0.00 0.00 41.06 2.87
3519 5294 2.048127 GCACGGGAGAACGCTCTT 60.048 61.111 0.00 0.00 41.06 2.85
3520 5295 2.493907 GAAGCACGGGAGAACGCTCT 62.494 60.000 0.00 0.00 41.06 4.09
3521 5296 2.048127 AAGCACGGGAGAACGCTC 60.048 61.111 0.00 0.00 40.54 5.03
3522 5297 2.048127 GAAGCACGGGAGAACGCT 60.048 61.111 0.00 0.00 37.37 5.07
3523 5298 3.119096 GGAAGCACGGGAGAACGC 61.119 66.667 0.00 0.00 37.37 4.84
3524 5299 1.738099 CTGGAAGCACGGGAGAACG 60.738 63.158 0.00 0.00 40.31 3.95
3525 5300 0.670854 GTCTGGAAGCACGGGAGAAC 60.671 60.000 0.00 0.00 0.00 3.01
3526 5301 1.118965 TGTCTGGAAGCACGGGAGAA 61.119 55.000 0.00 0.00 0.00 2.87
3527 5302 0.904865 ATGTCTGGAAGCACGGGAGA 60.905 55.000 0.00 0.00 0.00 3.71
3528 5303 0.742281 CATGTCTGGAAGCACGGGAG 60.742 60.000 0.00 0.00 0.00 4.30
3529 5304 1.296392 CATGTCTGGAAGCACGGGA 59.704 57.895 0.00 0.00 0.00 5.14
3530 5305 2.401766 GCATGTCTGGAAGCACGGG 61.402 63.158 0.00 0.00 0.00 5.28
3531 5306 1.376424 AGCATGTCTGGAAGCACGG 60.376 57.895 0.00 0.00 0.00 4.94
3532 5307 0.671472 TCAGCATGTCTGGAAGCACG 60.671 55.000 14.50 0.00 43.06 5.34
3533 5308 1.085091 CTCAGCATGTCTGGAAGCAC 58.915 55.000 14.50 0.00 43.06 4.40
3534 5309 0.675837 GCTCAGCATGTCTGGAAGCA 60.676 55.000 17.79 2.61 40.46 3.91
3535 5310 0.392729 AGCTCAGCATGTCTGGAAGC 60.393 55.000 16.23 16.23 43.06 3.86
3536 5311 1.207570 AGAGCTCAGCATGTCTGGAAG 59.792 52.381 17.77 8.56 43.06 3.46
3537 5312 1.273759 AGAGCTCAGCATGTCTGGAA 58.726 50.000 17.77 0.00 43.06 3.53
3538 5313 1.753649 GTAGAGCTCAGCATGTCTGGA 59.246 52.381 17.77 4.24 43.06 3.86
3539 5314 1.202510 GGTAGAGCTCAGCATGTCTGG 60.203 57.143 17.77 8.44 43.06 3.86
3540 5315 1.479730 TGGTAGAGCTCAGCATGTCTG 59.520 52.381 17.77 9.94 44.21 3.51
3541 5316 1.857965 TGGTAGAGCTCAGCATGTCT 58.142 50.000 17.77 0.00 37.40 3.41
3542 5317 2.680312 TTGGTAGAGCTCAGCATGTC 57.320 50.000 17.77 0.00 37.40 3.06
3543 5318 3.641434 AATTGGTAGAGCTCAGCATGT 57.359 42.857 17.77 7.11 37.40 3.21
3544 5319 4.978083 AAAATTGGTAGAGCTCAGCATG 57.022 40.909 17.77 0.00 37.54 4.06
3545 5320 4.768968 ACAAAAATTGGTAGAGCTCAGCAT 59.231 37.500 17.77 0.00 34.12 3.79
3546 5321 4.144297 ACAAAAATTGGTAGAGCTCAGCA 58.856 39.130 17.77 14.39 34.12 4.41
3547 5322 4.773323 ACAAAAATTGGTAGAGCTCAGC 57.227 40.909 17.77 11.94 34.12 4.26
3548 5323 6.801539 TGTACAAAAATTGGTAGAGCTCAG 57.198 37.500 17.77 0.00 34.12 3.35
3549 5324 7.759489 AATGTACAAAAATTGGTAGAGCTCA 57.241 32.000 17.77 0.00 34.12 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.