Multiple sequence alignment - TraesCS7A01G096600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G096600 chr7A 100.000 5256 0 0 1 5256 59358387 59353132 0.000000e+00 9707
1 TraesCS7A01G096600 chr7A 94.852 777 39 1 1 776 59384539 59383763 0.000000e+00 1212
2 TraesCS7A01G096600 chr7A 96.190 315 11 1 3404 3718 38814713 38815026 1.010000e-141 514
3 TraesCS7A01G096600 chr7A 82.540 504 49 20 4723 5215 59296678 59296203 1.760000e-109 407
4 TraesCS7A01G096600 chr7A 93.833 227 14 0 3018 3244 38814195 38814421 5.040000e-90 342
5 TraesCS7A01G096600 chr7A 97.468 158 3 1 4565 4721 4909706 4909549 8.680000e-68 268
6 TraesCS7A01G096600 chr7A 77.457 346 55 11 4723 5058 59205831 59205499 8.990000e-43 185
7 TraesCS7A01G096600 chr4A 88.279 2568 145 50 904 3403 671647636 671645157 0.000000e+00 2931
8 TraesCS7A01G096600 chr4A 90.403 1167 77 15 3404 4569 671645110 671643978 0.000000e+00 1502
9 TraesCS7A01G096600 chr4A 94.812 771 39 1 1 770 365772707 365773477 0.000000e+00 1201
10 TraesCS7A01G096600 chr4A 90.130 537 30 9 4723 5256 671643806 671643290 0.000000e+00 676
11 TraesCS7A01G096600 chr4A 81.868 546 63 18 4716 5256 671602448 671601934 1.350000e-115 427
12 TraesCS7A01G096600 chr4A 78.996 538 90 14 4725 5256 671527291 671526771 3.900000e-91 346
13 TraesCS7A01G096600 chr4A 96.835 158 4 1 4565 4721 67507006 67507163 4.040000e-66 263
14 TraesCS7A01G096600 chr7D 93.899 1131 54 8 2283 3403 55394402 55393277 0.000000e+00 1692
15 TraesCS7A01G096600 chr7D 87.893 1462 97 25 899 2293 55396779 55395331 0.000000e+00 1646
16 TraesCS7A01G096600 chr7D 90.948 1182 70 17 3404 4569 55393230 55392070 0.000000e+00 1555
17 TraesCS7A01G096600 chr7D 90.203 541 27 9 4723 5256 55392004 55391483 0.000000e+00 682
18 TraesCS7A01G096600 chr7D 81.855 496 47 19 4765 5256 55379201 55378745 1.380000e-100 377
19 TraesCS7A01G096600 chr7D 79.525 547 93 11 4716 5256 55270937 55270404 6.430000e-99 372
20 TraesCS7A01G096600 chr7D 79.342 547 94 11 4716 5256 55253855 55253322 2.990000e-97 366
21 TraesCS7A01G096600 chr7D 92.265 181 10 4 4542 4721 307190904 307190727 2.430000e-63 254
22 TraesCS7A01G096600 chr7D 90.608 181 13 4 4542 4721 306581312 306581135 2.450000e-58 237
23 TraesCS7A01G096600 chr3A 94.723 777 37 3 1 776 79212217 79211444 0.000000e+00 1205
24 TraesCS7A01G096600 chr3A 94.602 778 38 4 1 776 633190666 633189891 0.000000e+00 1201
25 TraesCS7A01G096600 chr3A 94.466 777 41 2 1 776 418692258 418693033 0.000000e+00 1195
26 TraesCS7A01G096600 chr3A 96.835 158 4 1 4565 4721 51893211 51893054 4.040000e-66 263
27 TraesCS7A01G096600 chr5A 94.588 776 42 0 1 776 526874766 526873991 0.000000e+00 1201
28 TraesCS7A01G096600 chr5A 95.570 158 6 1 4565 4721 19818012 19817855 8.740000e-63 252
29 TraesCS7A01G096600 chr2A 94.344 778 42 2 1 776 456110190 456109413 0.000000e+00 1192
30 TraesCS7A01G096600 chr1A 94.352 779 41 2 1 776 357746734 357745956 0.000000e+00 1192
31 TraesCS7A01G096600 chr1A 94.337 777 42 2 1 776 106290955 106291730 0.000000e+00 1190
32 TraesCS7A01G096600 chr4D 96.835 158 4 1 4565 4721 123498898 123498741 4.040000e-66 263
33 TraesCS7A01G096600 chr2D 95.570 158 6 1 4565 4721 306148876 306148719 8.740000e-63 252
34 TraesCS7A01G096600 chr6B 90.556 180 13 4 4542 4720 615276609 615276433 8.800000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G096600 chr7A 59353132 59358387 5255 True 9707.00 9707 100.00000 1 5256 1 chr7A.!!$R4 5255
1 TraesCS7A01G096600 chr7A 59383763 59384539 776 True 1212.00 1212 94.85200 1 776 1 chr7A.!!$R5 775
2 TraesCS7A01G096600 chr7A 38814195 38815026 831 False 428.00 514 95.01150 3018 3718 2 chr7A.!!$F1 700
3 TraesCS7A01G096600 chr4A 671643290 671647636 4346 True 1703.00 2931 89.60400 904 5256 3 chr4A.!!$R3 4352
4 TraesCS7A01G096600 chr4A 365772707 365773477 770 False 1201.00 1201 94.81200 1 770 1 chr4A.!!$F2 769
5 TraesCS7A01G096600 chr4A 671601934 671602448 514 True 427.00 427 81.86800 4716 5256 1 chr4A.!!$R2 540
6 TraesCS7A01G096600 chr4A 671526771 671527291 520 True 346.00 346 78.99600 4725 5256 1 chr4A.!!$R1 531
7 TraesCS7A01G096600 chr7D 55391483 55396779 5296 True 1393.75 1692 90.73575 899 5256 4 chr7D.!!$R6 4357
8 TraesCS7A01G096600 chr7D 55270404 55270937 533 True 372.00 372 79.52500 4716 5256 1 chr7D.!!$R2 540
9 TraesCS7A01G096600 chr7D 55253322 55253855 533 True 366.00 366 79.34200 4716 5256 1 chr7D.!!$R1 540
10 TraesCS7A01G096600 chr3A 79211444 79212217 773 True 1205.00 1205 94.72300 1 776 1 chr3A.!!$R2 775
11 TraesCS7A01G096600 chr3A 633189891 633190666 775 True 1201.00 1201 94.60200 1 776 1 chr3A.!!$R3 775
12 TraesCS7A01G096600 chr3A 418692258 418693033 775 False 1195.00 1195 94.46600 1 776 1 chr3A.!!$F1 775
13 TraesCS7A01G096600 chr5A 526873991 526874766 775 True 1201.00 1201 94.58800 1 776 1 chr5A.!!$R2 775
14 TraesCS7A01G096600 chr2A 456109413 456110190 777 True 1192.00 1192 94.34400 1 776 1 chr2A.!!$R1 775
15 TraesCS7A01G096600 chr1A 357745956 357746734 778 True 1192.00 1192 94.35200 1 776 1 chr1A.!!$R1 775
16 TraesCS7A01G096600 chr1A 106290955 106291730 775 False 1190.00 1190 94.33700 1 776 1 chr1A.!!$F1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 824 0.107459 GATGGTGGGGAGCTCAAGTC 60.107 60.000 17.19 2.94 0.00 3.01 F
839 846 0.249489 CGGAGGTCGAAGGGCAATAG 60.249 60.000 0.00 0.00 42.43 1.73 F
856 863 0.326595 TAGCGGGCCACTTGATTGAA 59.673 50.000 4.39 0.00 0.00 2.69 F
858 865 0.388520 GCGGGCCACTTGATTGAAAC 60.389 55.000 4.39 0.00 0.00 2.78 F
1877 1958 0.393537 GCAGTTGCATGACCCTAGCT 60.394 55.000 0.00 0.00 41.59 3.32 F
1880 1961 1.065854 AGTTGCATGACCCTAGCTCAC 60.066 52.381 0.00 0.00 0.00 3.51 F
3773 4950 0.933097 GTCCATCACTATGCTGCGTG 59.067 55.000 4.25 2.10 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 3330 0.179166 CACGCCACGAATCATTTGGG 60.179 55.000 0.0 0.0 0.00 4.12 R
2498 3532 2.301870 AGTATCAACTGGCTTTCGGTCA 59.698 45.455 0.0 0.0 33.57 4.02 R
2829 3870 3.628942 TGAACATAGATGGATGTGCTTGC 59.371 43.478 0.0 0.0 39.99 4.01 R
3112 4155 5.920273 CCACAATCAACAACTGTTTATGTCC 59.080 40.000 0.0 0.0 35.83 4.02 R
3763 4940 0.034756 AGGAACACACACGCAGCATA 59.965 50.000 0.0 0.0 0.00 3.14 R
4070 5258 1.255882 TGGGCAACACTAGCATTTGG 58.744 50.000 0.0 0.0 39.74 3.28 R
4590 5782 0.029300 TCTTGCTTGCTCAAACGTGC 59.971 50.000 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 6.896021 TGGGAATTTGTTAATGTTCGGTTA 57.104 33.333 0.00 0.00 0.00 2.85
119 120 1.144969 CATCAACCGCGTGTGTAACT 58.855 50.000 4.92 0.00 38.04 2.24
202 203 5.245526 ACGTAGGTTGTTCTAGGATCACTTT 59.754 40.000 0.00 0.00 0.00 2.66
268 271 4.450976 TCTCATTTGCGTATGTTAGCCAT 58.549 39.130 0.00 0.00 37.58 4.40
277 280 6.872920 TGCGTATGTTAGCCATCATATATGA 58.127 36.000 17.56 17.56 41.70 2.15
303 306 1.978712 CTTGCTGCAGCTCCACATCG 61.979 60.000 36.61 13.53 42.66 3.84
312 315 1.899814 AGCTCCACATCGTACCTTTGA 59.100 47.619 0.00 0.00 0.00 2.69
389 393 3.122948 CCGTGACTCACAAATTACTTCCG 59.877 47.826 9.84 0.00 33.40 4.30
481 486 7.551617 TGAAGACTCTCATCGTTACTATGTGTA 59.448 37.037 0.00 0.00 0.00 2.90
563 569 8.499288 TTGGGGTTTATCTTTATTTTGGTTCT 57.501 30.769 0.00 0.00 0.00 3.01
695 702 5.010282 GGGTTGTTGTGAAGATTACCTCAT 58.990 41.667 0.00 0.00 0.00 2.90
703 710 3.616821 TGAAGATTACCTCATTTGCGACG 59.383 43.478 0.00 0.00 0.00 5.12
727 734 3.577848 TGCTTTCAATGTGGTTATGCCTT 59.422 39.130 0.00 0.00 38.35 4.35
734 741 6.007076 TCAATGTGGTTATGCCTTTAAGTCA 58.993 36.000 0.00 0.00 38.35 3.41
736 743 7.831690 TCAATGTGGTTATGCCTTTAAGTCATA 59.168 33.333 0.00 0.00 38.35 2.15
770 777 2.017782 GAGATATAGCCGCATCGAGGA 58.982 52.381 0.00 0.00 0.00 3.71
776 783 1.944676 GCCGCATCGAGGACGTTAG 60.945 63.158 0.00 0.00 40.69 2.34
777 784 1.725665 CCGCATCGAGGACGTTAGA 59.274 57.895 0.00 0.00 40.69 2.10
778 785 0.317103 CCGCATCGAGGACGTTAGAG 60.317 60.000 0.00 0.00 40.69 2.43
779 786 0.656259 CGCATCGAGGACGTTAGAGA 59.344 55.000 0.00 0.00 40.69 3.10
780 787 1.595003 CGCATCGAGGACGTTAGAGAC 60.595 57.143 0.00 0.00 40.69 3.36
790 797 3.940723 GTTAGAGACGGGATGACGG 57.059 57.895 0.00 0.00 38.39 4.79
791 798 1.101331 GTTAGAGACGGGATGACGGT 58.899 55.000 0.00 0.00 38.39 4.83
792 799 1.475682 GTTAGAGACGGGATGACGGTT 59.524 52.381 0.00 0.00 38.39 4.44
793 800 1.843368 TAGAGACGGGATGACGGTTT 58.157 50.000 0.00 0.00 38.39 3.27
794 801 1.843368 AGAGACGGGATGACGGTTTA 58.157 50.000 0.00 0.00 38.39 2.01
795 802 1.749634 AGAGACGGGATGACGGTTTAG 59.250 52.381 0.00 0.00 38.39 1.85
796 803 0.175073 AGACGGGATGACGGTTTAGC 59.825 55.000 0.00 0.00 38.39 3.09
797 804 0.808847 GACGGGATGACGGTTTAGCC 60.809 60.000 0.00 0.00 38.39 3.93
806 813 4.235731 GGTTTAGCCGATGGTGGG 57.764 61.111 0.00 0.00 0.00 4.61
807 814 1.453197 GGTTTAGCCGATGGTGGGG 60.453 63.158 0.00 0.00 0.00 4.96
808 815 1.605453 GTTTAGCCGATGGTGGGGA 59.395 57.895 0.00 0.00 0.00 4.81
809 816 0.463833 GTTTAGCCGATGGTGGGGAG 60.464 60.000 0.00 0.00 0.00 4.30
810 817 2.265467 TTTAGCCGATGGTGGGGAGC 62.265 60.000 0.00 0.00 0.00 4.70
811 818 3.696518 TAGCCGATGGTGGGGAGCT 62.697 63.158 0.00 0.00 0.00 4.09
812 819 4.554036 GCCGATGGTGGGGAGCTC 62.554 72.222 4.71 4.71 0.00 4.09
813 820 3.083349 CCGATGGTGGGGAGCTCA 61.083 66.667 17.19 0.00 0.00 4.26
814 821 2.669133 CCGATGGTGGGGAGCTCAA 61.669 63.158 17.19 0.00 0.00 3.02
815 822 1.153289 CGATGGTGGGGAGCTCAAG 60.153 63.158 17.19 0.00 0.00 3.02
816 823 1.903877 CGATGGTGGGGAGCTCAAGT 61.904 60.000 17.19 0.00 0.00 3.16
817 824 0.107459 GATGGTGGGGAGCTCAAGTC 60.107 60.000 17.19 2.94 0.00 3.01
818 825 1.903877 ATGGTGGGGAGCTCAAGTCG 61.904 60.000 17.19 0.00 0.00 4.18
819 826 2.283529 GGTGGGGAGCTCAAGTCGA 61.284 63.158 17.19 0.00 0.00 4.20
820 827 1.079750 GTGGGGAGCTCAAGTCGAC 60.080 63.158 17.19 7.70 0.00 4.20
821 828 2.182030 GGGGAGCTCAAGTCGACG 59.818 66.667 17.19 0.00 0.00 5.12
822 829 2.182030 GGGAGCTCAAGTCGACGG 59.818 66.667 17.19 6.93 0.00 4.79
823 830 2.341101 GGGAGCTCAAGTCGACGGA 61.341 63.158 17.19 11.13 0.00 4.69
824 831 1.137825 GGAGCTCAAGTCGACGGAG 59.862 63.158 26.22 26.22 0.00 4.63
825 832 1.137825 GAGCTCAAGTCGACGGAGG 59.862 63.158 29.14 17.43 0.00 4.30
826 833 1.587933 GAGCTCAAGTCGACGGAGGT 61.588 60.000 31.16 31.16 41.64 3.85
827 834 1.153997 GCTCAAGTCGACGGAGGTC 60.154 63.158 29.14 16.89 39.89 3.85
835 842 3.379445 GACGGAGGTCGAAGGGCA 61.379 66.667 0.00 0.00 42.43 5.36
836 843 2.920912 ACGGAGGTCGAAGGGCAA 60.921 61.111 0.00 0.00 42.43 4.52
837 844 2.240162 GACGGAGGTCGAAGGGCAAT 62.240 60.000 0.00 0.00 42.43 3.56
838 845 0.974010 ACGGAGGTCGAAGGGCAATA 60.974 55.000 0.00 0.00 42.43 1.90
839 846 0.249489 CGGAGGTCGAAGGGCAATAG 60.249 60.000 0.00 0.00 42.43 1.73
840 847 0.533085 GGAGGTCGAAGGGCAATAGC 60.533 60.000 0.00 0.00 41.10 2.97
841 848 0.876342 GAGGTCGAAGGGCAATAGCG 60.876 60.000 0.00 0.00 43.41 4.26
842 849 1.887707 GGTCGAAGGGCAATAGCGG 60.888 63.158 0.00 0.00 43.41 5.52
843 850 1.887707 GTCGAAGGGCAATAGCGGG 60.888 63.158 0.00 0.00 43.41 6.13
844 851 3.279875 CGAAGGGCAATAGCGGGC 61.280 66.667 0.00 0.00 43.41 6.13
850 857 2.800736 GCAATAGCGGGCCACTTG 59.199 61.111 4.39 2.11 0.00 3.16
851 858 1.748879 GCAATAGCGGGCCACTTGA 60.749 57.895 4.39 0.00 0.00 3.02
852 859 1.103398 GCAATAGCGGGCCACTTGAT 61.103 55.000 4.39 0.00 0.00 2.57
853 860 1.392589 CAATAGCGGGCCACTTGATT 58.607 50.000 4.39 0.00 0.00 2.57
854 861 1.066002 CAATAGCGGGCCACTTGATTG 59.934 52.381 4.39 3.41 0.00 2.67
855 862 0.546122 ATAGCGGGCCACTTGATTGA 59.454 50.000 4.39 0.00 0.00 2.57
856 863 0.326595 TAGCGGGCCACTTGATTGAA 59.673 50.000 4.39 0.00 0.00 2.69
857 864 0.539438 AGCGGGCCACTTGATTGAAA 60.539 50.000 4.39 0.00 0.00 2.69
858 865 0.388520 GCGGGCCACTTGATTGAAAC 60.389 55.000 4.39 0.00 0.00 2.78
859 866 1.247567 CGGGCCACTTGATTGAAACT 58.752 50.000 4.39 0.00 0.00 2.66
860 867 1.613437 CGGGCCACTTGATTGAAACTT 59.387 47.619 4.39 0.00 0.00 2.66
861 868 2.607771 CGGGCCACTTGATTGAAACTTG 60.608 50.000 4.39 0.00 0.00 3.16
862 869 2.289010 GGGCCACTTGATTGAAACTTGG 60.289 50.000 4.39 0.00 0.00 3.61
863 870 2.365293 GGCCACTTGATTGAAACTTGGT 59.635 45.455 0.00 0.00 0.00 3.67
864 871 3.181466 GGCCACTTGATTGAAACTTGGTT 60.181 43.478 0.00 0.00 0.00 3.67
865 872 4.038642 GGCCACTTGATTGAAACTTGGTTA 59.961 41.667 0.00 0.00 0.00 2.85
866 873 5.452636 GGCCACTTGATTGAAACTTGGTTAA 60.453 40.000 0.00 0.00 0.00 2.01
867 874 5.691754 GCCACTTGATTGAAACTTGGTTAAG 59.308 40.000 0.00 0.00 39.86 1.85
869 876 6.918022 CCACTTGATTGAAACTTGGTTAAGTC 59.082 38.462 0.00 0.00 46.14 3.01
870 877 6.632834 CACTTGATTGAAACTTGGTTAAGTCG 59.367 38.462 0.00 0.00 46.14 4.18
871 878 6.540914 ACTTGATTGAAACTTGGTTAAGTCGA 59.459 34.615 0.00 0.00 46.14 4.20
872 879 6.295039 TGATTGAAACTTGGTTAAGTCGAC 57.705 37.500 7.70 7.70 46.14 4.20
873 880 6.053005 TGATTGAAACTTGGTTAAGTCGACT 58.947 36.000 13.58 13.58 46.14 4.18
874 881 7.211573 TGATTGAAACTTGGTTAAGTCGACTA 58.788 34.615 20.39 0.04 46.14 2.59
875 882 7.711772 TGATTGAAACTTGGTTAAGTCGACTAA 59.288 33.333 20.39 8.05 46.14 2.24
876 883 6.833342 TGAAACTTGGTTAAGTCGACTAAC 57.167 37.500 20.39 20.42 46.14 2.34
877 884 6.576185 TGAAACTTGGTTAAGTCGACTAACT 58.424 36.000 20.39 5.93 46.14 2.24
878 885 6.698766 TGAAACTTGGTTAAGTCGACTAACTC 59.301 38.462 20.39 15.39 46.14 3.01
879 886 4.791974 ACTTGGTTAAGTCGACTAACTCG 58.208 43.478 20.39 15.26 43.53 4.18
880 887 3.207474 TGGTTAAGTCGACTAACTCGC 57.793 47.619 20.39 10.80 42.62 5.03
881 888 2.172365 GGTTAAGTCGACTAACTCGCG 58.828 52.381 20.39 0.00 42.62 5.87
882 889 2.159653 GGTTAAGTCGACTAACTCGCGA 60.160 50.000 20.39 9.26 42.62 5.87
883 890 3.089982 GTTAAGTCGACTAACTCGCGAG 58.910 50.000 33.45 33.45 42.62 5.03
884 891 0.447011 AAGTCGACTAACTCGCGAGG 59.553 55.000 36.93 22.99 42.62 4.63
885 892 1.583194 GTCGACTAACTCGCGAGGC 60.583 63.158 36.93 19.89 42.62 4.70
886 893 2.278013 CGACTAACTCGCGAGGCC 60.278 66.667 36.93 19.89 35.06 5.19
887 894 2.104530 GACTAACTCGCGAGGCCC 59.895 66.667 36.93 18.42 0.00 5.80
888 895 3.427598 GACTAACTCGCGAGGCCCC 62.428 68.421 36.93 19.09 0.00 5.80
889 896 3.458163 CTAACTCGCGAGGCCCCA 61.458 66.667 36.93 17.11 0.00 4.96
890 897 2.998480 TAACTCGCGAGGCCCCAA 60.998 61.111 36.93 14.49 0.00 4.12
891 898 2.515996 CTAACTCGCGAGGCCCCAAA 62.516 60.000 36.93 14.45 0.00 3.28
892 899 2.515996 TAACTCGCGAGGCCCCAAAG 62.516 60.000 36.93 12.70 0.00 2.77
893 900 4.394712 CTCGCGAGGCCCCAAAGT 62.395 66.667 28.40 0.00 0.00 2.66
894 901 4.388499 TCGCGAGGCCCCAAAGTC 62.388 66.667 3.71 0.00 0.00 3.01
895 902 4.394712 CGCGAGGCCCCAAAGTCT 62.395 66.667 0.00 0.00 0.00 3.24
896 903 2.987125 GCGAGGCCCCAAAGTCTA 59.013 61.111 0.00 0.00 0.00 2.59
897 904 1.298667 GCGAGGCCCCAAAGTCTAA 59.701 57.895 0.00 0.00 0.00 2.10
918 925 7.481798 GTCTAAACGCAACTAAATCATTCCAAG 59.518 37.037 0.00 0.00 0.00 3.61
1032 1039 1.374252 CTCGGCCACGTACTGCTTT 60.374 57.895 2.24 0.00 41.85 3.51
1230 1247 4.651008 AAGTTCGACGCCGCGGAA 62.651 61.111 33.48 11.42 35.37 4.30
1392 1438 2.092968 TGTCTCTGTGGTTTCAGTTGCT 60.093 45.455 0.00 0.00 36.85 3.91
1404 1450 1.302511 AGTTGCTTGCCGTCGGATT 60.303 52.632 17.49 0.00 0.00 3.01
1407 1453 2.202479 GCTTGCCGTCGGATTTGC 60.202 61.111 17.49 9.26 0.00 3.68
1409 1455 1.578926 CTTGCCGTCGGATTTGCAA 59.421 52.632 17.49 10.47 41.08 4.08
1451 1497 2.690778 GGCCAGCGCTGATTTCGTT 61.691 57.895 38.06 0.00 34.44 3.85
1479 1525 0.583438 CGGCATGCGAGGAATTGTAG 59.417 55.000 12.44 0.00 0.00 2.74
1486 1532 1.664151 GCGAGGAATTGTAGGTTTCCG 59.336 52.381 0.00 0.00 44.99 4.30
1491 1537 4.918588 AGGAATTGTAGGTTTCCGATTGT 58.081 39.130 0.00 0.00 44.99 2.71
1502 1548 5.130477 AGGTTTCCGATTGTCCATATACACT 59.870 40.000 0.00 0.00 0.00 3.55
1503 1549 5.236478 GGTTTCCGATTGTCCATATACACTG 59.764 44.000 0.00 0.00 0.00 3.66
1504 1550 5.862678 TTCCGATTGTCCATATACACTGA 57.137 39.130 0.00 0.00 0.00 3.41
1505 1551 6.419484 TTCCGATTGTCCATATACACTGAT 57.581 37.500 0.00 0.00 0.00 2.90
1511 1566 6.449635 TTGTCCATATACACTGATTTTGGC 57.550 37.500 0.00 0.00 0.00 4.52
1515 1570 6.318648 GTCCATATACACTGATTTTGGCTCAA 59.681 38.462 0.00 0.00 0.00 3.02
1604 1678 6.786843 AGTCCCATCCACCATTATATTCTT 57.213 37.500 0.00 0.00 0.00 2.52
1616 1690 7.384932 CACCATTATATTCTTGTGTCGCTCATA 59.615 37.037 0.00 0.00 0.00 2.15
1626 1700 1.804151 TGTCGCTCATACAGTTTTGCC 59.196 47.619 0.00 0.00 0.00 4.52
1671 1745 7.041780 ACTGTTGATGATCTGTTCTTGTGTTAC 60.042 37.037 0.00 0.00 0.00 2.50
1828 1909 5.007626 TGCAAGGTCATTTAGCGATGAATAC 59.992 40.000 0.00 0.00 37.75 1.89
1876 1957 2.101700 GCAGTTGCATGACCCTAGC 58.898 57.895 0.00 0.00 41.59 3.42
1877 1958 0.393537 GCAGTTGCATGACCCTAGCT 60.394 55.000 0.00 0.00 41.59 3.32
1878 1959 1.661341 CAGTTGCATGACCCTAGCTC 58.339 55.000 0.00 0.00 0.00 4.09
1879 1960 1.065926 CAGTTGCATGACCCTAGCTCA 60.066 52.381 0.00 0.00 0.00 4.26
1880 1961 1.065854 AGTTGCATGACCCTAGCTCAC 60.066 52.381 0.00 0.00 0.00 3.51
1881 1962 1.065854 GTTGCATGACCCTAGCTCACT 60.066 52.381 0.00 0.00 0.00 3.41
1887 1968 4.521146 CATGACCCTAGCTCACTGATTTT 58.479 43.478 0.00 0.00 0.00 1.82
1892 1973 6.100279 TGACCCTAGCTCACTGATTTTATCAT 59.900 38.462 0.00 0.00 38.85 2.45
1903 1984 8.485392 TCACTGATTTTATCATCCACACAGATA 58.515 33.333 0.00 0.00 38.85 1.98
1904 1985 9.112725 CACTGATTTTATCATCCACACAGATAA 57.887 33.333 0.00 0.00 38.85 1.75
1918 2000 6.545666 CCACACAGATAATAAATGGCCAGTTA 59.454 38.462 26.40 26.40 0.00 2.24
1925 2007 5.402054 AATAAATGGCCAGTTATCTCCCA 57.598 39.130 32.25 11.47 31.30 4.37
1932 2014 3.633986 GGCCAGTTATCTCCCATTTTGAG 59.366 47.826 0.00 0.00 0.00 3.02
1937 2019 5.296283 CAGTTATCTCCCATTTTGAGCTCTG 59.704 44.000 16.19 4.39 0.00 3.35
1939 2021 3.795688 TCTCCCATTTTGAGCTCTGTT 57.204 42.857 16.19 0.00 0.00 3.16
1941 2023 4.473444 TCTCCCATTTTGAGCTCTGTTTT 58.527 39.130 16.19 0.00 0.00 2.43
1943 2025 6.068010 TCTCCCATTTTGAGCTCTGTTTTAA 58.932 36.000 16.19 0.00 0.00 1.52
1944 2026 6.549364 TCTCCCATTTTGAGCTCTGTTTTAAA 59.451 34.615 16.19 2.80 0.00 1.52
1945 2027 7.233348 TCTCCCATTTTGAGCTCTGTTTTAAAT 59.767 33.333 16.19 8.12 0.00 1.40
1946 2028 7.153985 TCCCATTTTGAGCTCTGTTTTAAATG 58.846 34.615 16.19 17.24 33.52 2.32
1947 2029 6.930722 CCCATTTTGAGCTCTGTTTTAAATGT 59.069 34.615 16.19 0.00 32.45 2.71
1948 2030 7.116805 CCCATTTTGAGCTCTGTTTTAAATGTC 59.883 37.037 16.19 0.00 32.45 3.06
1949 2031 7.116805 CCATTTTGAGCTCTGTTTTAAATGTCC 59.883 37.037 16.19 0.00 32.45 4.02
1950 2032 5.705609 TTGAGCTCTGTTTTAAATGTCCC 57.294 39.130 16.19 0.00 0.00 4.46
1951 2033 4.985538 TGAGCTCTGTTTTAAATGTCCCT 58.014 39.130 16.19 0.00 0.00 4.20
1952 2034 4.761739 TGAGCTCTGTTTTAAATGTCCCTG 59.238 41.667 16.19 0.00 0.00 4.45
1953 2035 4.985538 AGCTCTGTTTTAAATGTCCCTGA 58.014 39.130 0.00 0.00 0.00 3.86
1956 2043 7.175104 AGCTCTGTTTTAAATGTCCCTGATTA 58.825 34.615 0.00 0.00 0.00 1.75
1963 2051 4.337264 AAATGTCCCTGATTAAAGGCCT 57.663 40.909 0.00 0.00 35.85 5.19
1969 2057 2.489802 CCCTGATTAAAGGCCTCCATCC 60.490 54.545 5.23 0.00 35.85 3.51
1972 2060 4.043310 CCTGATTAAAGGCCTCCATCCATA 59.957 45.833 5.23 0.00 0.00 2.74
1980 2068 2.613977 GGCCTCCATCCATAGTGAATCG 60.614 54.545 0.00 0.00 0.00 3.34
1985 2073 3.069586 TCCATCCATAGTGAATCGTGTCC 59.930 47.826 0.00 0.00 0.00 4.02
2037 2126 4.400529 TTCAACTTGCTGTCTGTCTACA 57.599 40.909 0.00 0.00 0.00 2.74
2086 2175 2.045536 GGAGTGGCTGCCCTTCTG 60.046 66.667 17.53 0.00 0.00 3.02
2234 2326 9.027129 CCATTTTTCTATTCATGTTACATGCTG 57.973 33.333 19.47 9.62 0.00 4.41
2235 2327 8.537223 CATTTTTCTATTCATGTTACATGCTGC 58.463 33.333 19.47 0.00 0.00 5.25
2296 3330 7.770897 TGCTAAGATCTTTCCAGTAAATTCTCC 59.229 37.037 14.36 0.00 0.00 3.71
2329 3363 5.060506 TCGTGGCGTGGATATCATATTTTT 58.939 37.500 4.83 0.00 0.00 1.94
2346 3380 4.330944 TTTTTCTAGACAGGTTCGCAGA 57.669 40.909 0.00 0.00 0.00 4.26
2453 3487 8.674263 AGATGATTACCATGAGATTTCTTGTC 57.326 34.615 0.00 0.00 35.17 3.18
2498 3532 9.507329 TCTCTTATTTTGATTTGCAGTCTTAGT 57.493 29.630 3.31 0.00 0.00 2.24
2552 3586 7.721399 GGAGTTGTTGTTATGATTATCCCTGAT 59.279 37.037 0.00 0.00 0.00 2.90
2635 3669 8.177119 TGTAACTTATGCCTGATCAAGTTTTT 57.823 30.769 12.20 0.00 40.63 1.94
2642 3676 9.638239 TTATGCCTGATCAAGTTTTTAATGTTC 57.362 29.630 0.00 0.00 0.00 3.18
2657 3691 2.385013 TGTTCGCAGATACATGTGCT 57.615 45.000 9.11 2.67 44.06 4.40
2707 3748 4.440880 CATCTTTTGTGTCCCAAGCAAAA 58.559 39.130 0.00 0.00 39.03 2.44
2803 3844 4.888038 TTTGCACATCAGCTTAGCATAG 57.112 40.909 7.07 0.00 34.87 2.23
2829 3870 2.776330 GCATGGCATTTTTCATTTGCG 58.224 42.857 0.00 0.00 37.25 4.85
2880 3921 8.289618 TCTTGTATAATTTGTTCAACAGTCTGC 58.710 33.333 0.00 0.00 0.00 4.26
2882 3923 8.109705 TGTATAATTTGTTCAACAGTCTGCAT 57.890 30.769 0.00 0.00 0.00 3.96
2888 3929 4.640364 TGTTCAACAGTCTGCATATCACA 58.360 39.130 0.00 0.00 0.00 3.58
3087 4130 4.256920 ACATCTGTACATTGTTGCCTCTC 58.743 43.478 0.00 0.00 0.00 3.20
3100 4143 6.392625 TGTTGCCTCTCTATGTGTACTATC 57.607 41.667 0.00 0.00 0.00 2.08
3156 4199 5.840693 TGTGGATATCAGAGTATGGATGTGT 59.159 40.000 4.83 0.00 0.00 3.72
3165 4208 7.223584 TCAGAGTATGGATGTGTCTTGAAAAA 58.776 34.615 0.00 0.00 0.00 1.94
3169 4212 9.941664 GAGTATGGATGTGTCTTGAAAAATATG 57.058 33.333 0.00 0.00 0.00 1.78
3303 4429 9.399797 TGAATAGTGAATTAGTGATGCATCTTT 57.600 29.630 26.32 16.59 0.00 2.52
3316 4442 7.013655 AGTGATGCATCTTTATGAAACCATACC 59.986 37.037 26.32 0.00 34.84 2.73
3321 4447 7.094162 TGCATCTTTATGAAACCATACCGAAAA 60.094 33.333 0.00 0.00 34.84 2.29
3338 4464 4.245660 CGAAAAGCTCTGAAGTATGGTCA 58.754 43.478 0.00 0.00 0.00 4.02
3345 4471 7.661536 AGCTCTGAAGTATGGTCAACTATAA 57.338 36.000 0.00 0.00 0.00 0.98
3383 4511 9.811995 ATGATGGTCATCTTTACAAATTTCATG 57.188 29.630 11.62 0.00 38.60 3.07
3553 4730 4.030195 GCGTCGATATTTGTTGCCTTTTTC 59.970 41.667 0.00 0.00 0.00 2.29
3718 4895 6.653020 TGCAACAGATATTGAGGTTAGACAT 58.347 36.000 0.00 0.00 0.00 3.06
3761 4938 7.339976 TCTGCATGATTAGATTTTTGTCCATCA 59.660 33.333 0.00 0.00 0.00 3.07
3763 4940 7.123098 TGCATGATTAGATTTTTGTCCATCACT 59.877 33.333 0.00 0.00 0.00 3.41
3773 4950 0.933097 GTCCATCACTATGCTGCGTG 59.067 55.000 4.25 2.10 0.00 5.34
3885 5072 5.218139 CAAGAGCCAACTGATTTCTCAAAC 58.782 41.667 0.00 0.00 0.00 2.93
3922 5109 2.545526 GACATTGTGTGACTGACCACAG 59.454 50.000 0.00 0.00 46.42 3.66
4060 5248 7.546358 ACATCATTTTAGAAATCCATTCGCAA 58.454 30.769 0.00 0.00 43.15 4.85
4061 5249 8.034215 ACATCATTTTAGAAATCCATTCGCAAA 58.966 29.630 0.00 0.00 43.15 3.68
4070 5258 7.865707 AGAAATCCATTCGCAAATATCTACAC 58.134 34.615 0.00 0.00 43.15 2.90
4074 5262 5.883115 TCCATTCGCAAATATCTACACCAAA 59.117 36.000 0.00 0.00 0.00 3.28
4083 5271 7.201732 GCAAATATCTACACCAAATGCTAGTGT 60.202 37.037 0.00 0.00 46.09 3.55
4086 5274 3.751175 TCTACACCAAATGCTAGTGTTGC 59.249 43.478 0.00 0.00 41.86 4.17
4096 5284 5.937975 ATGCTAGTGTTGCCCATAATTTT 57.062 34.783 0.00 0.00 0.00 1.82
4097 5285 5.736951 TGCTAGTGTTGCCCATAATTTTT 57.263 34.783 0.00 0.00 0.00 1.94
4240 5428 3.733236 CGTGAGCCGGTTTATGAGA 57.267 52.632 1.90 0.00 0.00 3.27
4267 5455 0.527565 CCAAGTGAAAATCCCAGGCG 59.472 55.000 0.00 0.00 0.00 5.52
4301 5489 0.739462 TGAAGCCATCGTAAGCACCG 60.739 55.000 0.00 0.00 37.18 4.94
4330 5518 4.555709 TTGGTTCAGGCGCACGGT 62.556 61.111 10.83 0.00 0.00 4.83
4339 5527 2.203015 GCGCACGGTGGATATGGT 60.203 61.111 10.60 0.00 0.00 3.55
4343 5531 0.393808 GCACGGTGGATATGGTGGTT 60.394 55.000 10.60 0.00 0.00 3.67
4358 5546 1.963515 GTGGTTCTTGGGCAACTTCAT 59.036 47.619 0.00 0.00 0.00 2.57
4397 5585 2.156504 CACGCTACTGCTGTTCAGAAAG 59.843 50.000 0.09 3.22 45.72 2.62
4426 5614 4.624015 AGTTCAGAACAATGGTTTGCATG 58.376 39.130 15.85 0.00 37.36 4.06
4427 5615 3.029320 TCAGAACAATGGTTTGCATGC 57.971 42.857 11.82 11.82 37.36 4.06
4428 5616 2.364647 TCAGAACAATGGTTTGCATGCA 59.635 40.909 18.46 18.46 37.36 3.96
4429 5617 3.007074 TCAGAACAATGGTTTGCATGCAT 59.993 39.130 23.37 2.36 37.36 3.96
4446 5634 1.155889 CATGCACTTGGTCGTTAGCA 58.844 50.000 0.00 0.00 36.34 3.49
4458 5646 3.811497 GGTCGTTAGCAAAGGTTACAACT 59.189 43.478 0.00 0.00 0.00 3.16
4473 5661 2.146342 ACAACTGTGTCTGCATACTGC 58.854 47.619 3.71 0.00 37.35 4.40
4491 5679 1.298602 GCACACGCATCATATGACCA 58.701 50.000 7.78 0.00 38.36 4.02
4494 5682 3.132925 CACACGCATCATATGACCATGA 58.867 45.455 7.78 0.00 39.20 3.07
4499 5687 5.854866 CACGCATCATATGACCATGAAATTC 59.145 40.000 7.78 0.00 38.39 2.17
4501 5689 4.855388 GCATCATATGACCATGAAATTCGC 59.145 41.667 7.78 0.00 38.39 4.70
4506 5694 4.789012 ATGACCATGAAATTCGCAGTTT 57.211 36.364 0.00 0.00 0.00 2.66
4526 5714 7.440523 AGTTTTGTAACTGGATCAAAGCTAG 57.559 36.000 0.00 0.00 42.91 3.42
4569 5761 6.127101 TCTGGAAGTAACGGAGATCTGAATA 58.873 40.000 0.00 0.00 33.76 1.75
4570 5762 6.039493 TCTGGAAGTAACGGAGATCTGAATAC 59.961 42.308 0.00 0.00 33.76 1.89
4571 5763 5.213675 GGAAGTAACGGAGATCTGAATACG 58.786 45.833 0.00 0.00 0.00 3.06
4573 5765 3.568853 AGTAACGGAGATCTGAATACGGG 59.431 47.826 0.00 0.00 0.00 5.28
4574 5766 2.359981 ACGGAGATCTGAATACGGGA 57.640 50.000 0.00 0.00 0.00 5.14
4575 5767 1.955080 ACGGAGATCTGAATACGGGAC 59.045 52.381 0.00 0.00 0.00 4.46
4576 5768 1.954382 CGGAGATCTGAATACGGGACA 59.046 52.381 0.00 0.00 0.00 4.02
4577 5769 2.287668 CGGAGATCTGAATACGGGACAC 60.288 54.545 0.00 0.00 0.00 3.67
4590 5782 0.038159 GGGACACGTCACTCCTCAAG 60.038 60.000 0.00 0.00 0.00 3.02
4591 5783 0.667792 GGACACGTCACTCCTCAAGC 60.668 60.000 0.00 0.00 0.00 4.01
4592 5784 0.032130 GACACGTCACTCCTCAAGCA 59.968 55.000 0.00 0.00 0.00 3.91
4593 5785 0.249489 ACACGTCACTCCTCAAGCAC 60.249 55.000 0.00 0.00 0.00 4.40
4594 5786 1.007271 ACGTCACTCCTCAAGCACG 60.007 57.895 0.00 0.00 39.41 5.34
4605 5797 0.029300 TCAAGCACGTTTGAGCAAGC 59.971 50.000 0.00 0.00 32.39 4.01
4606 5798 0.248580 CAAGCACGTTTGAGCAAGCA 60.249 50.000 0.00 0.00 33.73 3.91
4607 5799 0.455410 AAGCACGTTTGAGCAAGCAA 59.545 45.000 0.00 0.00 33.73 3.91
4608 5800 0.029834 AGCACGTTTGAGCAAGCAAG 59.970 50.000 0.00 0.00 33.73 4.01
4610 5802 1.746760 CACGTTTGAGCAAGCAAGAC 58.253 50.000 0.00 0.00 0.00 3.01
4611 5803 1.063912 CACGTTTGAGCAAGCAAGACA 59.936 47.619 0.00 0.00 0.00 3.41
4613 5805 2.111756 CGTTTGAGCAAGCAAGACAAC 58.888 47.619 0.00 0.00 0.00 3.32
4614 5806 2.477694 CGTTTGAGCAAGCAAGACAACA 60.478 45.455 0.00 0.00 0.00 3.33
4615 5807 2.849880 TTGAGCAAGCAAGACAACAC 57.150 45.000 0.00 0.00 0.00 3.32
4616 5808 2.042686 TGAGCAAGCAAGACAACACT 57.957 45.000 0.00 0.00 0.00 3.55
4617 5809 3.192541 TGAGCAAGCAAGACAACACTA 57.807 42.857 0.00 0.00 0.00 2.74
4618 5810 3.133691 TGAGCAAGCAAGACAACACTAG 58.866 45.455 0.00 0.00 0.00 2.57
4619 5811 1.876156 AGCAAGCAAGACAACACTAGC 59.124 47.619 0.00 0.00 0.00 3.42
4620 5812 1.876156 GCAAGCAAGACAACACTAGCT 59.124 47.619 0.00 0.00 0.00 3.32
4623 5815 3.760580 AGCAAGACAACACTAGCTTCT 57.239 42.857 0.00 0.00 0.00 2.85
4624 5816 4.873746 AGCAAGACAACACTAGCTTCTA 57.126 40.909 0.00 0.00 0.00 2.10
4625 5817 4.561105 AGCAAGACAACACTAGCTTCTAC 58.439 43.478 0.00 0.00 0.00 2.59
4626 5818 3.365220 GCAAGACAACACTAGCTTCTACG 59.635 47.826 0.00 0.00 0.00 3.51
4628 5820 4.422546 AGACAACACTAGCTTCTACGAC 57.577 45.455 0.00 0.00 0.00 4.34
4629 5821 4.073549 AGACAACACTAGCTTCTACGACT 58.926 43.478 0.00 0.00 0.00 4.18
4630 5822 4.154556 AGACAACACTAGCTTCTACGACTC 59.845 45.833 0.00 0.00 0.00 3.36
4631 5823 3.190953 ACAACACTAGCTTCTACGACTCC 59.809 47.826 0.00 0.00 0.00 3.85
4632 5824 2.008329 ACACTAGCTTCTACGACTCCG 58.992 52.381 0.00 0.00 42.50 4.63
4633 5825 2.277969 CACTAGCTTCTACGACTCCGA 58.722 52.381 0.00 0.00 39.50 4.55
4634 5826 2.285756 CACTAGCTTCTACGACTCCGAG 59.714 54.545 0.00 0.00 39.50 4.63
4635 5827 2.093553 ACTAGCTTCTACGACTCCGAGT 60.094 50.000 0.00 0.00 39.50 4.18
4636 5828 1.823797 AGCTTCTACGACTCCGAGTT 58.176 50.000 1.71 0.00 39.50 3.01
4637 5829 2.983229 AGCTTCTACGACTCCGAGTTA 58.017 47.619 1.71 0.00 39.50 2.24
4638 5830 3.341823 AGCTTCTACGACTCCGAGTTAA 58.658 45.455 1.71 0.00 39.50 2.01
4639 5831 3.755378 AGCTTCTACGACTCCGAGTTAAA 59.245 43.478 1.71 0.00 39.50 1.52
4640 5832 4.097012 GCTTCTACGACTCCGAGTTAAAG 58.903 47.826 1.71 4.25 39.50 1.85
4642 5834 5.542616 TTCTACGACTCCGAGTTAAAGAG 57.457 43.478 1.71 0.00 39.50 2.85
4643 5835 4.573900 TCTACGACTCCGAGTTAAAGAGT 58.426 43.478 1.71 0.00 43.42 3.24
4644 5836 3.555917 ACGACTCCGAGTTAAAGAGTG 57.444 47.619 1.71 0.00 40.87 3.51
4645 5837 3.144506 ACGACTCCGAGTTAAAGAGTGA 58.855 45.455 1.71 0.00 40.87 3.41
4646 5838 3.188873 ACGACTCCGAGTTAAAGAGTGAG 59.811 47.826 1.71 0.00 40.87 3.51
4647 5839 3.188873 CGACTCCGAGTTAAAGAGTGAGT 59.811 47.826 1.71 0.00 40.87 3.41
4648 5840 4.391216 CGACTCCGAGTTAAAGAGTGAGTA 59.609 45.833 1.71 0.00 40.87 2.59
4650 5842 6.403418 CGACTCCGAGTTAAAGAGTGAGTATT 60.403 42.308 1.71 0.00 40.87 1.89
4651 5843 6.854778 ACTCCGAGTTAAAGAGTGAGTATTC 58.145 40.000 0.00 0.00 39.36 1.75
4654 5846 6.095160 TCCGAGTTAAAGAGTGAGTATTCTCC 59.905 42.308 0.00 0.00 39.75 3.71
4655 5847 6.127703 CCGAGTTAAAGAGTGAGTATTCTCCA 60.128 42.308 0.00 0.00 39.75 3.86
4656 5848 7.313646 CGAGTTAAAGAGTGAGTATTCTCCAA 58.686 38.462 0.00 0.00 39.75 3.53
4657 5849 7.486551 CGAGTTAAAGAGTGAGTATTCTCCAAG 59.513 40.741 0.00 0.00 39.75 3.61
4659 5851 4.479786 AAGAGTGAGTATTCTCCAAGGC 57.520 45.455 0.00 0.00 39.75 4.35
4660 5852 2.428890 AGAGTGAGTATTCTCCAAGGCG 59.571 50.000 0.00 0.00 39.75 5.52
4661 5853 2.427453 GAGTGAGTATTCTCCAAGGCGA 59.573 50.000 0.00 0.00 39.75 5.54
4665 5857 3.197766 TGAGTATTCTCCAAGGCGACATT 59.802 43.478 0.00 0.00 39.75 2.71
4666 5858 3.535561 AGTATTCTCCAAGGCGACATTG 58.464 45.455 0.00 0.00 0.00 2.82
4667 5859 2.496899 ATTCTCCAAGGCGACATTGT 57.503 45.000 0.00 0.00 0.00 2.71
4668 5860 1.808411 TTCTCCAAGGCGACATTGTC 58.192 50.000 6.73 6.73 0.00 3.18
4669 5861 0.036388 TCTCCAAGGCGACATTGTCC 60.036 55.000 11.12 4.28 0.00 4.02
4670 5862 0.036010 CTCCAAGGCGACATTGTCCT 60.036 55.000 11.12 1.26 0.00 3.85
4671 5863 0.036388 TCCAAGGCGACATTGTCCTC 60.036 55.000 11.12 3.91 0.00 3.71
4673 5865 1.522668 CAAGGCGACATTGTCCTCAA 58.477 50.000 11.12 0.00 37.98 3.02
4675 5867 2.270352 AGGCGACATTGTCCTCAAAA 57.730 45.000 11.12 0.00 37.11 2.44
4677 5869 2.554032 AGGCGACATTGTCCTCAAAAAG 59.446 45.455 11.12 0.00 37.11 2.27
4679 5871 2.293399 GCGACATTGTCCTCAAAAAGGT 59.707 45.455 11.12 0.00 46.32 3.50
4680 5872 3.609409 GCGACATTGTCCTCAAAAAGGTC 60.609 47.826 11.12 0.00 46.32 3.85
4681 5873 3.363970 CGACATTGTCCTCAAAAAGGTCG 60.364 47.826 11.12 7.31 46.32 4.79
4682 5874 3.551846 ACATTGTCCTCAAAAAGGTCGT 58.448 40.909 0.00 0.00 46.32 4.34
4683 5875 3.315191 ACATTGTCCTCAAAAAGGTCGTG 59.685 43.478 0.00 0.00 46.32 4.35
4685 5877 3.823281 TGTCCTCAAAAAGGTCGTGTA 57.177 42.857 0.00 0.00 46.32 2.90
4686 5878 4.345859 TGTCCTCAAAAAGGTCGTGTAT 57.654 40.909 0.00 0.00 46.32 2.29
4688 5880 3.683340 GTCCTCAAAAAGGTCGTGTATCC 59.317 47.826 0.00 0.00 46.32 2.59
4690 5882 3.435671 CCTCAAAAAGGTCGTGTATCCAC 59.564 47.826 0.00 0.00 40.67 4.02
4691 5883 4.062293 CTCAAAAAGGTCGTGTATCCACA 58.938 43.478 0.00 0.00 41.93 4.17
4692 5884 4.062293 TCAAAAAGGTCGTGTATCCACAG 58.938 43.478 0.00 0.00 41.93 3.66
4693 5885 3.764237 AAAAGGTCGTGTATCCACAGT 57.236 42.857 0.00 0.00 41.93 3.55
4695 5887 1.183549 AGGTCGTGTATCCACAGTCC 58.816 55.000 0.00 0.00 41.93 3.85
4696 5888 0.175073 GGTCGTGTATCCACAGTCCC 59.825 60.000 0.00 0.00 41.93 4.46
4697 5889 0.892755 GTCGTGTATCCACAGTCCCA 59.107 55.000 0.00 0.00 41.93 4.37
4698 5890 1.274167 GTCGTGTATCCACAGTCCCAA 59.726 52.381 0.00 0.00 41.93 4.12
4699 5891 1.972075 TCGTGTATCCACAGTCCCAAA 59.028 47.619 0.00 0.00 41.93 3.28
4700 5892 2.028476 TCGTGTATCCACAGTCCCAAAG 60.028 50.000 0.00 0.00 41.93 2.77
4704 5896 1.915141 ATCCACAGTCCCAAAGCAAG 58.085 50.000 0.00 0.00 0.00 4.01
4706 5898 0.825010 CCACAGTCCCAAAGCAAGCT 60.825 55.000 0.00 0.00 0.00 3.74
4708 5900 0.538287 ACAGTCCCAAAGCAAGCTCC 60.538 55.000 0.00 0.00 0.00 4.70
4709 5901 1.302832 AGTCCCAAAGCAAGCTCCG 60.303 57.895 0.00 0.00 0.00 4.63
4710 5902 2.672996 TCCCAAAGCAAGCTCCGC 60.673 61.111 0.00 0.00 0.00 5.54
4711 5903 3.752339 CCCAAAGCAAGCTCCGCC 61.752 66.667 4.54 0.00 0.00 6.13
4712 5904 2.674380 CCAAAGCAAGCTCCGCCT 60.674 61.111 4.54 0.00 0.00 5.52
4713 5905 1.377202 CCAAAGCAAGCTCCGCCTA 60.377 57.895 4.54 0.00 0.00 3.93
4714 5906 0.960364 CCAAAGCAAGCTCCGCCTAA 60.960 55.000 4.54 0.00 0.00 2.69
4715 5907 0.881118 CAAAGCAAGCTCCGCCTAAA 59.119 50.000 4.54 0.00 0.00 1.85
4716 5908 1.269448 CAAAGCAAGCTCCGCCTAAAA 59.731 47.619 4.54 0.00 0.00 1.52
4717 5909 1.839424 AAGCAAGCTCCGCCTAAAAT 58.161 45.000 4.54 0.00 0.00 1.82
4719 5911 0.101219 GCAAGCTCCGCCTAAAATGG 59.899 55.000 0.00 0.00 0.00 3.16
4720 5912 0.740737 CAAGCTCCGCCTAAAATGGG 59.259 55.000 0.00 0.00 0.00 4.00
4721 5913 0.395724 AAGCTCCGCCTAAAATGGGG 60.396 55.000 0.00 0.00 39.43 4.96
4887 6108 0.106167 TAGCACTAGTGGAGCCCGAT 60.106 55.000 23.95 0.00 0.00 4.18
4888 6109 1.227380 GCACTAGTGGAGCCCGATG 60.227 63.158 23.95 0.00 0.00 3.84
4889 6110 1.676678 GCACTAGTGGAGCCCGATGA 61.677 60.000 23.95 0.00 0.00 2.92
4923 6147 1.129437 GGCTGCAAGAACGACATCTTC 59.871 52.381 0.50 0.00 37.56 2.87
4924 6148 2.072298 GCTGCAAGAACGACATCTTCT 58.928 47.619 0.00 0.00 37.56 2.85
4925 6149 2.481952 GCTGCAAGAACGACATCTTCTT 59.518 45.455 0.00 0.00 37.56 2.52
4926 6150 3.424170 GCTGCAAGAACGACATCTTCTTC 60.424 47.826 0.00 0.00 37.56 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 0.532573 GCCGAGAAGAGACCATCACA 59.467 55.000 0.00 0.00 0.00 3.58
147 148 1.208535 TCCAACACCGTGTTCACTTCT 59.791 47.619 14.11 0.00 38.77 2.85
202 203 4.387559 CACGGTCGAACAACTATGATCAAA 59.612 41.667 0.00 0.00 0.00 2.69
268 271 5.105063 GCAGCAAGCGACTATCATATATGA 58.895 41.667 17.56 17.56 41.70 2.15
389 393 1.026718 CGGTCCCTGCATCTGGTTTC 61.027 60.000 0.00 0.00 0.00 2.78
481 486 4.723789 ACCACTACTGATCATCTGGGAAAT 59.276 41.667 0.00 0.00 0.00 2.17
517 522 1.079405 GCGACAAAGTCCCCGATCA 60.079 57.895 0.00 0.00 0.00 2.92
563 569 0.111832 ACACTCAGGGTCCGACTACA 59.888 55.000 0.00 0.00 0.00 2.74
669 676 6.134535 AGGTAATCTTCACAACAACCCATA 57.865 37.500 0.00 0.00 0.00 2.74
695 702 2.115595 CATTGAAAGCAACGTCGCAAA 58.884 42.857 0.00 0.00 36.72 3.68
703 710 3.679502 GGCATAACCACATTGAAAGCAAC 59.320 43.478 0.00 0.00 35.99 4.17
716 723 6.537301 CGAAGTATGACTTAAAGGCATAACCA 59.463 38.462 0.00 0.00 46.96 3.67
727 734 5.643348 TCCTACGTGTCGAAGTATGACTTAA 59.357 40.000 0.00 0.00 38.80 1.85
734 741 6.313411 GCTATATCTCCTACGTGTCGAAGTAT 59.687 42.308 0.00 0.00 0.00 2.12
736 743 4.451774 GCTATATCTCCTACGTGTCGAAGT 59.548 45.833 0.00 0.00 0.00 3.01
776 783 1.801765 GCTAAACCGTCATCCCGTCTC 60.802 57.143 0.00 0.00 0.00 3.36
777 784 0.175073 GCTAAACCGTCATCCCGTCT 59.825 55.000 0.00 0.00 0.00 4.18
778 785 0.808847 GGCTAAACCGTCATCCCGTC 60.809 60.000 0.00 0.00 0.00 4.79
779 786 1.219935 GGCTAAACCGTCATCCCGT 59.780 57.895 0.00 0.00 0.00 5.28
780 787 4.120085 GGCTAAACCGTCATCCCG 57.880 61.111 0.00 0.00 0.00 5.14
789 796 1.453197 CCCCACCATCGGCTAAACC 60.453 63.158 0.00 0.00 0.00 3.27
790 797 0.463833 CTCCCCACCATCGGCTAAAC 60.464 60.000 0.00 0.00 0.00 2.01
791 798 1.912220 CTCCCCACCATCGGCTAAA 59.088 57.895 0.00 0.00 0.00 1.85
792 799 2.742116 GCTCCCCACCATCGGCTAA 61.742 63.158 0.00 0.00 0.00 3.09
793 800 3.161450 GCTCCCCACCATCGGCTA 61.161 66.667 0.00 0.00 0.00 3.93
795 802 4.554036 GAGCTCCCCACCATCGGC 62.554 72.222 0.87 0.00 0.00 5.54
796 803 2.599645 CTTGAGCTCCCCACCATCGG 62.600 65.000 12.15 0.00 0.00 4.18
797 804 1.153289 CTTGAGCTCCCCACCATCG 60.153 63.158 12.15 0.00 0.00 3.84
798 805 0.107459 GACTTGAGCTCCCCACCATC 60.107 60.000 12.15 0.00 0.00 3.51
799 806 1.903877 CGACTTGAGCTCCCCACCAT 61.904 60.000 12.15 0.00 0.00 3.55
800 807 2.583441 CGACTTGAGCTCCCCACCA 61.583 63.158 12.15 0.00 0.00 4.17
801 808 2.266055 CGACTTGAGCTCCCCACC 59.734 66.667 12.15 0.00 0.00 4.61
802 809 1.079750 GTCGACTTGAGCTCCCCAC 60.080 63.158 12.15 0.00 0.00 4.61
803 810 2.636412 CGTCGACTTGAGCTCCCCA 61.636 63.158 14.70 0.00 0.00 4.96
804 811 2.182030 CGTCGACTTGAGCTCCCC 59.818 66.667 14.70 0.00 0.00 4.81
805 812 2.182030 CCGTCGACTTGAGCTCCC 59.818 66.667 14.70 0.00 0.00 4.30
806 813 1.137825 CTCCGTCGACTTGAGCTCC 59.862 63.158 14.70 0.00 0.00 4.70
807 814 1.137825 CCTCCGTCGACTTGAGCTC 59.862 63.158 20.50 6.82 0.00 4.09
808 815 1.587933 GACCTCCGTCGACTTGAGCT 61.588 60.000 20.50 11.37 0.00 4.09
809 816 1.153997 GACCTCCGTCGACTTGAGC 60.154 63.158 20.50 9.10 0.00 4.26
818 825 2.240162 ATTGCCCTTCGACCTCCGTC 62.240 60.000 0.00 0.00 39.75 4.79
819 826 0.974010 TATTGCCCTTCGACCTCCGT 60.974 55.000 0.00 0.00 39.75 4.69
820 827 0.249489 CTATTGCCCTTCGACCTCCG 60.249 60.000 0.00 0.00 40.25 4.63
821 828 0.533085 GCTATTGCCCTTCGACCTCC 60.533 60.000 0.00 0.00 0.00 4.30
822 829 0.876342 CGCTATTGCCCTTCGACCTC 60.876 60.000 0.00 0.00 35.36 3.85
823 830 1.144057 CGCTATTGCCCTTCGACCT 59.856 57.895 0.00 0.00 35.36 3.85
824 831 1.887707 CCGCTATTGCCCTTCGACC 60.888 63.158 0.00 0.00 35.36 4.79
825 832 1.887707 CCCGCTATTGCCCTTCGAC 60.888 63.158 0.00 0.00 35.36 4.20
826 833 2.504032 CCCGCTATTGCCCTTCGA 59.496 61.111 0.00 0.00 35.36 3.71
827 834 3.279875 GCCCGCTATTGCCCTTCG 61.280 66.667 0.00 0.00 35.36 3.79
828 835 2.907407 GGCCCGCTATTGCCCTTC 60.907 66.667 0.00 0.00 41.97 3.46
833 840 1.103398 ATCAAGTGGCCCGCTATTGC 61.103 55.000 0.00 0.00 0.00 3.56
834 841 1.066002 CAATCAAGTGGCCCGCTATTG 59.934 52.381 0.00 0.97 0.00 1.90
835 842 1.064758 TCAATCAAGTGGCCCGCTATT 60.065 47.619 0.00 0.00 0.00 1.73
836 843 0.546122 TCAATCAAGTGGCCCGCTAT 59.454 50.000 0.00 0.00 0.00 2.97
837 844 0.326595 TTCAATCAAGTGGCCCGCTA 59.673 50.000 0.00 0.00 0.00 4.26
838 845 0.539438 TTTCAATCAAGTGGCCCGCT 60.539 50.000 0.00 0.00 0.00 5.52
839 846 0.388520 GTTTCAATCAAGTGGCCCGC 60.389 55.000 0.00 0.00 0.00 6.13
840 847 1.247567 AGTTTCAATCAAGTGGCCCG 58.752 50.000 0.00 0.00 0.00 6.13
841 848 2.289010 CCAAGTTTCAATCAAGTGGCCC 60.289 50.000 0.00 0.00 0.00 5.80
842 849 2.365293 ACCAAGTTTCAATCAAGTGGCC 59.635 45.455 0.00 0.00 0.00 5.36
843 850 3.733443 ACCAAGTTTCAATCAAGTGGC 57.267 42.857 0.00 0.00 0.00 5.01
844 851 6.805713 ACTTAACCAAGTTTCAATCAAGTGG 58.194 36.000 0.00 0.00 42.51 4.00
845 852 6.632834 CGACTTAACCAAGTTTCAATCAAGTG 59.367 38.462 0.00 0.00 45.18 3.16
846 853 6.540914 TCGACTTAACCAAGTTTCAATCAAGT 59.459 34.615 0.00 0.00 45.18 3.16
847 854 6.851330 GTCGACTTAACCAAGTTTCAATCAAG 59.149 38.462 8.70 0.00 45.18 3.02
848 855 6.540914 AGTCGACTTAACCAAGTTTCAATCAA 59.459 34.615 13.58 0.00 45.18 2.57
849 856 6.053005 AGTCGACTTAACCAAGTTTCAATCA 58.947 36.000 13.58 0.00 45.18 2.57
850 857 6.541111 AGTCGACTTAACCAAGTTTCAATC 57.459 37.500 13.58 0.00 45.18 2.67
851 858 7.713942 AGTTAGTCGACTTAACCAAGTTTCAAT 59.286 33.333 25.44 3.88 45.18 2.57
852 859 7.043565 AGTTAGTCGACTTAACCAAGTTTCAA 58.956 34.615 25.44 3.80 45.18 2.69
853 860 6.576185 AGTTAGTCGACTTAACCAAGTTTCA 58.424 36.000 25.44 0.00 45.18 2.69
854 861 7.103159 GAGTTAGTCGACTTAACCAAGTTTC 57.897 40.000 25.44 12.95 45.18 2.78
870 877 2.104530 GGGCCTCGCGAGTTAGTC 59.895 66.667 32.41 19.73 0.00 2.59
871 878 3.459063 GGGGCCTCGCGAGTTAGT 61.459 66.667 32.41 0.00 0.00 2.24
872 879 2.515996 TTTGGGGCCTCGCGAGTTAG 62.516 60.000 32.41 19.51 0.00 2.34
873 880 2.515996 CTTTGGGGCCTCGCGAGTTA 62.516 60.000 32.41 12.38 0.00 2.24
874 881 3.901797 CTTTGGGGCCTCGCGAGTT 62.902 63.158 32.41 0.00 0.00 3.01
875 882 4.394712 CTTTGGGGCCTCGCGAGT 62.395 66.667 32.41 0.00 0.00 4.18
876 883 4.394712 ACTTTGGGGCCTCGCGAG 62.395 66.667 29.06 29.06 0.00 5.03
877 884 4.388499 GACTTTGGGGCCTCGCGA 62.388 66.667 9.26 9.26 0.00 5.87
878 885 2.515996 TTAGACTTTGGGGCCTCGCG 62.516 60.000 0.84 0.00 0.00 5.87
879 886 0.322187 TTTAGACTTTGGGGCCTCGC 60.322 55.000 0.84 0.00 0.00 5.03
880 887 1.450025 GTTTAGACTTTGGGGCCTCG 58.550 55.000 0.84 0.00 0.00 4.63
881 888 1.450025 CGTTTAGACTTTGGGGCCTC 58.550 55.000 0.84 0.00 0.00 4.70
882 889 0.608308 GCGTTTAGACTTTGGGGCCT 60.608 55.000 0.84 0.00 0.00 5.19
883 890 0.891904 TGCGTTTAGACTTTGGGGCC 60.892 55.000 0.00 0.00 0.00 5.80
884 891 0.955905 TTGCGTTTAGACTTTGGGGC 59.044 50.000 0.00 0.00 0.00 5.80
885 892 2.227194 AGTTGCGTTTAGACTTTGGGG 58.773 47.619 0.00 0.00 0.00 4.96
886 893 5.427036 TTTAGTTGCGTTTAGACTTTGGG 57.573 39.130 0.00 0.00 0.00 4.12
887 894 6.664515 TGATTTAGTTGCGTTTAGACTTTGG 58.335 36.000 0.00 0.00 0.00 3.28
888 895 8.728088 AATGATTTAGTTGCGTTTAGACTTTG 57.272 30.769 0.00 0.00 0.00 2.77
889 896 8.021396 GGAATGATTTAGTTGCGTTTAGACTTT 58.979 33.333 0.00 0.00 0.00 2.66
890 897 7.174253 TGGAATGATTTAGTTGCGTTTAGACTT 59.826 33.333 0.00 0.00 0.00 3.01
891 898 6.653320 TGGAATGATTTAGTTGCGTTTAGACT 59.347 34.615 0.00 0.00 0.00 3.24
892 899 6.837992 TGGAATGATTTAGTTGCGTTTAGAC 58.162 36.000 0.00 0.00 0.00 2.59
893 900 7.441890 TTGGAATGATTTAGTTGCGTTTAGA 57.558 32.000 0.00 0.00 0.00 2.10
894 901 6.251376 GCTTGGAATGATTTAGTTGCGTTTAG 59.749 38.462 0.00 0.00 0.00 1.85
895 902 6.090129 GCTTGGAATGATTTAGTTGCGTTTA 58.910 36.000 0.00 0.00 0.00 2.01
896 903 4.923281 GCTTGGAATGATTTAGTTGCGTTT 59.077 37.500 0.00 0.00 0.00 3.60
897 904 4.022416 TGCTTGGAATGATTTAGTTGCGTT 60.022 37.500 0.00 0.00 0.00 4.84
918 925 1.129437 GAACTCAACGCTCCAGATTGC 59.871 52.381 0.00 0.00 0.00 3.56
1189 1206 3.983420 CTTGGCTTGGGCTGGGGA 61.983 66.667 0.00 0.00 38.73 4.81
1292 1318 0.980231 GCCTGACCTGTCATCCTCCT 60.980 60.000 0.00 0.00 39.13 3.69
1330 1366 0.031857 CGCCACAATCCAAAGCAACA 59.968 50.000 0.00 0.00 0.00 3.33
1392 1438 1.578926 CTTGCAAATCCGACGGCAA 59.421 52.632 9.66 8.61 43.32 4.52
1404 1450 2.833533 GCCATATCGCGCCTTGCAA 61.834 57.895 0.00 0.00 46.97 4.08
1407 1453 1.835483 GACTGCCATATCGCGCCTTG 61.835 60.000 0.00 0.00 0.00 3.61
1409 1455 2.029666 GACTGCCATATCGCGCCT 59.970 61.111 0.00 0.00 0.00 5.52
1442 1488 1.352114 CGCCGGAGTTAACGAAATCA 58.648 50.000 5.05 0.00 31.12 2.57
1479 1525 5.236478 CAGTGTATATGGACAATCGGAAACC 59.764 44.000 0.00 0.00 0.00 3.27
1486 1532 7.013655 AGCCAAAATCAGTGTATATGGACAATC 59.986 37.037 10.53 0.00 0.00 2.67
1491 1537 6.000246 TGAGCCAAAATCAGTGTATATGGA 58.000 37.500 10.53 0.00 0.00 3.41
1502 1548 4.280677 CAGGTTAAGGTTGAGCCAAAATCA 59.719 41.667 0.00 0.00 40.61 2.57
1503 1549 4.809673 CAGGTTAAGGTTGAGCCAAAATC 58.190 43.478 0.00 0.00 40.61 2.17
1504 1550 3.006859 GCAGGTTAAGGTTGAGCCAAAAT 59.993 43.478 0.00 0.00 40.61 1.82
1505 1551 2.364002 GCAGGTTAAGGTTGAGCCAAAA 59.636 45.455 0.00 0.00 40.61 2.44
1511 1566 3.126001 TCACAGCAGGTTAAGGTTGAG 57.874 47.619 0.00 0.00 0.00 3.02
1515 1570 5.010012 CAGAAATTTCACAGCAGGTTAAGGT 59.990 40.000 19.99 0.00 0.00 3.50
1556 1617 1.955778 CACTGAAACTGTTCCATGGCA 59.044 47.619 6.96 0.00 32.28 4.92
1574 1648 1.202879 TGGTGGATGGGACTTGAACAC 60.203 52.381 0.00 0.00 0.00 3.32
1584 1658 6.070656 ACACAAGAATATAATGGTGGATGGG 58.929 40.000 0.00 0.00 0.00 4.00
1604 1678 2.223144 GCAAAACTGTATGAGCGACACA 59.777 45.455 0.00 0.00 0.00 3.72
1616 1690 3.019964 TGCGAGATGGCAAAACTGT 57.980 47.368 0.00 0.00 40.59 3.55
1640 1714 6.297080 AGAACAGATCATCAACAGTGAGAT 57.703 37.500 0.00 0.00 37.14 2.75
1647 1721 6.204688 GGTAACACAAGAACAGATCATCAACA 59.795 38.462 0.00 0.00 0.00 3.33
1872 1953 6.988580 TGTGGATGATAAAATCAGTGAGCTAG 59.011 38.462 0.00 0.00 43.53 3.42
1873 1954 6.763135 GTGTGGATGATAAAATCAGTGAGCTA 59.237 38.462 0.00 0.00 43.53 3.32
1874 1955 5.587844 GTGTGGATGATAAAATCAGTGAGCT 59.412 40.000 0.00 0.00 43.53 4.09
1875 1956 5.355071 TGTGTGGATGATAAAATCAGTGAGC 59.645 40.000 0.00 0.00 43.53 4.26
1876 1957 6.820152 TCTGTGTGGATGATAAAATCAGTGAG 59.180 38.462 0.00 0.00 43.53 3.51
1877 1958 6.710278 TCTGTGTGGATGATAAAATCAGTGA 58.290 36.000 0.00 0.00 43.53 3.41
1878 1959 6.990341 TCTGTGTGGATGATAAAATCAGTG 57.010 37.500 0.00 0.00 43.53 3.66
1879 1960 9.857656 ATTATCTGTGTGGATGATAAAATCAGT 57.142 29.630 0.00 0.00 43.53 3.41
1887 1968 7.611467 GGCCATTTATTATCTGTGTGGATGATA 59.389 37.037 0.00 0.00 0.00 2.15
1892 1973 5.122707 TGGCCATTTATTATCTGTGTGGA 57.877 39.130 0.00 0.00 0.00 4.02
1903 1984 5.402054 TGGGAGATAACTGGCCATTTATT 57.598 39.130 24.51 16.10 0.00 1.40
1904 1985 5.605540 ATGGGAGATAACTGGCCATTTAT 57.394 39.130 24.10 24.10 0.00 1.40
1911 1993 3.067320 GCTCAAAATGGGAGATAACTGGC 59.933 47.826 0.00 0.00 34.24 4.85
1918 2000 4.313020 AACAGAGCTCAAAATGGGAGAT 57.687 40.909 17.77 0.00 34.24 2.75
1925 2007 7.015584 AGGGACATTTAAAACAGAGCTCAAAAT 59.984 33.333 17.77 8.56 0.00 1.82
1932 2014 5.904362 ATCAGGGACATTTAAAACAGAGC 57.096 39.130 0.00 0.00 0.00 4.09
1937 2019 6.816640 GGCCTTTAATCAGGGACATTTAAAAC 59.183 38.462 0.00 0.00 34.01 2.43
1939 2021 6.260663 AGGCCTTTAATCAGGGACATTTAAA 58.739 36.000 0.00 0.00 34.01 1.52
1941 2023 5.445964 GAGGCCTTTAATCAGGGACATTTA 58.554 41.667 6.77 0.00 34.01 1.40
1943 2025 3.373110 GGAGGCCTTTAATCAGGGACATT 60.373 47.826 6.77 0.00 34.01 2.71
1944 2026 2.175715 GGAGGCCTTTAATCAGGGACAT 59.824 50.000 6.77 0.00 34.01 3.06
1945 2027 1.564348 GGAGGCCTTTAATCAGGGACA 59.436 52.381 6.77 0.00 34.01 4.02
1946 2028 1.564348 TGGAGGCCTTTAATCAGGGAC 59.436 52.381 6.77 0.00 34.01 4.46
1947 2029 1.979809 TGGAGGCCTTTAATCAGGGA 58.020 50.000 6.77 0.00 34.01 4.20
1948 2030 2.489802 GGATGGAGGCCTTTAATCAGGG 60.490 54.545 6.77 0.00 34.01 4.45
1949 2031 2.175499 TGGATGGAGGCCTTTAATCAGG 59.825 50.000 6.77 0.00 36.95 3.86
1950 2032 3.582998 TGGATGGAGGCCTTTAATCAG 57.417 47.619 6.77 0.00 0.00 2.90
1951 2033 4.665009 ACTATGGATGGAGGCCTTTAATCA 59.335 41.667 6.77 3.93 0.00 2.57
1952 2034 5.006386 CACTATGGATGGAGGCCTTTAATC 58.994 45.833 6.77 10.66 0.00 1.75
1953 2035 4.665009 TCACTATGGATGGAGGCCTTTAAT 59.335 41.667 6.77 0.11 0.00 1.40
1956 2043 2.492025 TCACTATGGATGGAGGCCTTT 58.508 47.619 6.77 0.00 0.00 3.11
1963 2051 3.069586 GGACACGATTCACTATGGATGGA 59.930 47.826 0.00 0.00 0.00 3.41
1969 2057 7.222224 GGTACTTAAAGGACACGATTCACTATG 59.778 40.741 0.00 0.00 0.00 2.23
1972 2060 5.245526 AGGTACTTAAAGGACACGATTCACT 59.754 40.000 0.00 0.00 27.25 3.41
2037 2126 2.254508 AGACGGCCTTAACTACCTGTT 58.745 47.619 0.00 0.00 42.31 3.16
2107 2196 5.390991 GCAATACCTAGCACACTTGAACTTC 60.391 44.000 0.00 0.00 0.00 3.01
2135 2224 1.002134 TGGCTGGGCTACTGAAAGC 60.002 57.895 0.00 0.00 41.99 3.51
2139 2228 1.536418 ACTGTGGCTGGGCTACTGA 60.536 57.895 16.49 0.00 40.23 3.41
2234 2326 5.493735 CGCTTCACTAAAAATAGTGCTAGC 58.506 41.667 20.71 20.71 45.20 3.42
2235 2327 5.063438 TGCGCTTCACTAAAAATAGTGCTAG 59.937 40.000 9.73 10.63 45.20 3.42
2247 2342 6.128956 GCAACAAAATTAATGCGCTTCACTAA 60.129 34.615 9.73 0.00 0.00 2.24
2296 3330 0.179166 CACGCCACGAATCATTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
2329 3363 3.632604 CCTATTCTGCGAACCTGTCTAGA 59.367 47.826 0.00 0.00 0.00 2.43
2342 3376 3.873952 GTCCACATCTTGTCCTATTCTGC 59.126 47.826 0.00 0.00 0.00 4.26
2346 3380 4.927267 TTGGTCCACATCTTGTCCTATT 57.073 40.909 0.00 0.00 0.00 1.73
2391 3425 9.371136 CAAGACAGAAGCAACTAATAACATCTA 57.629 33.333 0.00 0.00 0.00 1.98
2392 3426 8.097038 TCAAGACAGAAGCAACTAATAACATCT 58.903 33.333 0.00 0.00 0.00 2.90
2393 3427 8.256611 TCAAGACAGAAGCAACTAATAACATC 57.743 34.615 0.00 0.00 0.00 3.06
2412 3446 8.131731 GGTAATCATCTTTTATGCCTTCAAGAC 58.868 37.037 0.00 0.00 0.00 3.01
2480 3514 4.213270 CGGTCACTAAGACTGCAAATCAAA 59.787 41.667 0.79 0.00 45.99 2.69
2498 3532 2.301870 AGTATCAACTGGCTTTCGGTCA 59.698 45.455 0.00 0.00 33.57 4.02
2635 3669 4.441792 AGCACATGTATCTGCGAACATTA 58.558 39.130 0.00 0.00 38.51 1.90
2642 3676 4.864916 AACTAAAGCACATGTATCTGCG 57.135 40.909 0.00 0.00 38.51 5.18
2707 3748 4.848660 ACATGCTGATCCTATCCTACCAAT 59.151 41.667 0.00 0.00 0.00 3.16
2829 3870 3.628942 TGAACATAGATGGATGTGCTTGC 59.371 43.478 0.00 0.00 39.99 4.01
3112 4155 5.920273 CCACAATCAACAACTGTTTATGTCC 59.080 40.000 0.00 0.00 35.83 4.02
3115 4158 9.507280 GATATCCACAATCAACAACTGTTTATG 57.493 33.333 0.00 0.00 35.83 1.90
3165 4208 9.941325 GATGTTTCTCAGTCCATATTCTCATAT 57.059 33.333 0.00 0.00 0.00 1.78
3169 4212 8.203485 AGAAGATGTTTCTCAGTCCATATTCTC 58.797 37.037 0.00 0.00 40.10 2.87
3251 4377 3.664107 TCTTTGACGGGATCTGTTTCTG 58.336 45.455 0.00 0.00 0.00 3.02
3303 4429 5.584649 CAGAGCTTTTCGGTATGGTTTCATA 59.415 40.000 0.00 0.00 34.96 2.15
3316 4442 4.245660 TGACCATACTTCAGAGCTTTTCG 58.754 43.478 0.00 0.00 0.00 3.46
3321 4447 7.661536 TTATAGTTGACCATACTTCAGAGCT 57.338 36.000 0.00 0.00 0.00 4.09
3411 4586 2.305927 AGACACAGGGAAATACAGTGGG 59.694 50.000 0.00 0.00 34.65 4.61
3718 4895 9.734984 ATCATGCAGATCAAATCAGATATACAA 57.265 29.630 0.00 0.00 28.20 2.41
3725 4902 8.919777 AATCTAATCATGCAGATCAAATCAGA 57.080 30.769 0.00 0.00 35.39 3.27
3733 4910 7.709947 TGGACAAAAATCTAATCATGCAGATC 58.290 34.615 0.00 0.00 35.39 2.75
3738 4915 7.486647 AGTGATGGACAAAAATCTAATCATGC 58.513 34.615 0.00 0.00 30.01 4.06
3761 4938 1.148310 GAACACACACGCAGCATAGT 58.852 50.000 0.00 0.00 0.00 2.12
3763 4940 0.034756 AGGAACACACACGCAGCATA 59.965 50.000 0.00 0.00 0.00 3.14
3773 4950 7.496920 ACTTACCAAGTACTAAAAGGAACACAC 59.503 37.037 0.00 0.00 40.69 3.82
3830 5010 5.784177 CAGCTTCTATACACGGTCCAATAT 58.216 41.667 0.00 0.00 0.00 1.28
3885 5072 6.596888 ACACAATGTCACAATGATTCCTAGAG 59.403 38.462 0.00 0.00 0.00 2.43
3922 5109 5.682862 CAGTTGTTTGACAGCTTAATGTGTC 59.317 40.000 9.42 9.42 37.57 3.67
4043 5230 9.554395 TGTAGATATTTGCGAATGGATTTCTAA 57.446 29.630 9.60 0.00 31.73 2.10
4045 5232 7.041098 GGTGTAGATATTTGCGAATGGATTTCT 60.041 37.037 9.60 6.36 31.73 2.52
4050 5238 5.029807 TGGTGTAGATATTTGCGAATGGA 57.970 39.130 9.60 0.00 0.00 3.41
4056 5244 5.173774 AGCATTTGGTGTAGATATTTGCG 57.826 39.130 0.00 0.00 33.04 4.85
4060 5248 7.201732 GCAACACTAGCATTTGGTGTAGATATT 60.202 37.037 0.00 0.00 42.37 1.28
4061 5249 6.260936 GCAACACTAGCATTTGGTGTAGATAT 59.739 38.462 0.00 0.00 42.37 1.63
4070 5258 1.255882 TGGGCAACACTAGCATTTGG 58.744 50.000 0.00 0.00 39.74 3.28
4074 5262 5.937975 AAAATTATGGGCAACACTAGCAT 57.062 34.783 0.00 0.00 39.74 3.79
4100 5288 5.091431 GTGTCACTAATCTCTGCAAAATGC 58.909 41.667 0.00 0.00 45.29 3.56
4240 5428 4.043310 TGGGATTTTCACTTGGAGATGACT 59.957 41.667 0.00 0.00 0.00 3.41
4267 5455 2.489722 GGCTTCAAATGTGGAGAGAACC 59.510 50.000 0.00 0.00 30.95 3.62
4330 5518 1.064017 GCCCAAGAACCACCATATCCA 60.064 52.381 0.00 0.00 0.00 3.41
4339 5527 2.364970 CAATGAAGTTGCCCAAGAACCA 59.635 45.455 0.00 0.00 0.00 3.67
4358 5546 2.925706 TAGTCCCTGCCCACGCAA 60.926 61.111 0.00 0.00 46.66 4.85
4397 5585 3.817647 ACCATTGTTCTGAACTTCTCTGC 59.182 43.478 20.18 0.00 0.00 4.26
4426 5614 0.179189 GCTAACGACCAAGTGCATGC 60.179 55.000 11.82 11.82 0.00 4.06
4427 5615 1.155889 TGCTAACGACCAAGTGCATG 58.844 50.000 0.00 0.00 0.00 4.06
4428 5616 1.890876 TTGCTAACGACCAAGTGCAT 58.109 45.000 0.00 0.00 0.00 3.96
4429 5617 1.601903 CTTTGCTAACGACCAAGTGCA 59.398 47.619 0.00 0.00 0.00 4.57
4446 5634 3.616219 TGCAGACACAGTTGTAACCTTT 58.384 40.909 0.00 0.00 35.47 3.11
4473 5661 3.132925 TCATGGTCATATGATGCGTGTG 58.867 45.455 9.02 3.42 32.39 3.82
4506 5694 5.865085 ACACTAGCTTTGATCCAGTTACAA 58.135 37.500 0.00 0.00 0.00 2.41
4526 5714 9.906660 CTTCCAGAAGAGAATATCTATGTACAC 57.093 37.037 0.00 0.00 40.79 2.90
4543 5735 4.399618 TCAGATCTCCGTTACTTCCAGAAG 59.600 45.833 5.85 5.85 43.79 2.85
4556 5748 1.954382 TGTCCCGTATTCAGATCTCCG 59.046 52.381 0.00 0.00 0.00 4.63
4570 5762 1.802337 TTGAGGAGTGACGTGTCCCG 61.802 60.000 0.00 0.00 44.03 5.14
4571 5763 0.038159 CTTGAGGAGTGACGTGTCCC 60.038 60.000 0.00 0.00 32.70 4.46
4573 5765 0.032130 TGCTTGAGGAGTGACGTGTC 59.968 55.000 0.00 0.00 0.00 3.67
4574 5766 0.249489 GTGCTTGAGGAGTGACGTGT 60.249 55.000 0.00 0.00 0.00 4.49
4575 5767 1.278172 CGTGCTTGAGGAGTGACGTG 61.278 60.000 0.00 0.00 32.23 4.49
4576 5768 1.007271 CGTGCTTGAGGAGTGACGT 60.007 57.895 0.00 0.00 32.23 4.34
4577 5769 0.597637 AACGTGCTTGAGGAGTGACG 60.598 55.000 0.00 0.00 38.52 4.35
4578 5770 1.261619 CAAACGTGCTTGAGGAGTGAC 59.738 52.381 0.00 0.00 0.00 3.67
4580 5772 1.528586 CTCAAACGTGCTTGAGGAGTG 59.471 52.381 18.32 0.00 45.73 3.51
4590 5782 0.029300 TCTTGCTTGCTCAAACGTGC 59.971 50.000 0.00 0.00 0.00 5.34
4591 5783 1.063912 TGTCTTGCTTGCTCAAACGTG 59.936 47.619 0.00 0.00 0.00 4.49
4592 5784 1.378531 TGTCTTGCTTGCTCAAACGT 58.621 45.000 0.00 0.00 0.00 3.99
4593 5785 2.111756 GTTGTCTTGCTTGCTCAAACG 58.888 47.619 0.00 0.00 0.00 3.60
4594 5786 2.854185 GTGTTGTCTTGCTTGCTCAAAC 59.146 45.455 0.00 0.00 0.00 2.93
4605 5797 4.617645 GTCGTAGAAGCTAGTGTTGTCTTG 59.382 45.833 0.00 0.00 39.69 3.02
4606 5798 4.519730 AGTCGTAGAAGCTAGTGTTGTCTT 59.480 41.667 0.00 0.00 39.69 3.01
4607 5799 4.073549 AGTCGTAGAAGCTAGTGTTGTCT 58.926 43.478 0.00 0.00 39.69 3.41
4608 5800 4.405196 GAGTCGTAGAAGCTAGTGTTGTC 58.595 47.826 0.00 0.00 39.69 3.18
4610 5802 3.728268 CGGAGTCGTAGAAGCTAGTGTTG 60.728 52.174 0.00 0.00 39.69 3.33
4611 5803 2.419324 CGGAGTCGTAGAAGCTAGTGTT 59.581 50.000 0.00 0.00 39.69 3.32
4613 5805 2.277969 TCGGAGTCGTAGAAGCTAGTG 58.722 52.381 0.00 0.00 39.69 2.74
4614 5806 2.093553 ACTCGGAGTCGTAGAAGCTAGT 60.094 50.000 4.45 0.00 39.69 2.57
4615 5807 2.553086 ACTCGGAGTCGTAGAAGCTAG 58.447 52.381 4.45 0.00 39.69 3.42
4616 5808 2.687700 ACTCGGAGTCGTAGAAGCTA 57.312 50.000 4.45 0.00 39.69 3.32
4617 5809 1.823797 AACTCGGAGTCGTAGAAGCT 58.176 50.000 11.71 0.00 39.69 3.74
4618 5810 3.754188 TTAACTCGGAGTCGTAGAAGC 57.246 47.619 11.71 0.00 39.69 3.86
4619 5811 5.122082 ACTCTTTAACTCGGAGTCGTAGAAG 59.878 44.000 11.71 10.75 39.69 2.85
4620 5812 4.999950 ACTCTTTAACTCGGAGTCGTAGAA 59.000 41.667 11.71 1.99 39.69 2.10
4623 5815 4.318332 TCACTCTTTAACTCGGAGTCGTA 58.682 43.478 11.71 0.00 38.12 3.43
4624 5816 3.144506 TCACTCTTTAACTCGGAGTCGT 58.855 45.455 11.71 0.00 38.12 4.34
4625 5817 3.188873 ACTCACTCTTTAACTCGGAGTCG 59.811 47.826 11.71 1.14 38.12 4.18
4626 5818 4.769859 ACTCACTCTTTAACTCGGAGTC 57.230 45.455 11.71 0.00 38.12 3.36
4628 5820 7.090953 AGAATACTCACTCTTTAACTCGGAG 57.909 40.000 2.83 2.83 0.00 4.63
4629 5821 6.095160 GGAGAATACTCACTCTTTAACTCGGA 59.905 42.308 0.00 0.00 44.22 4.55
4630 5822 6.127703 TGGAGAATACTCACTCTTTAACTCGG 60.128 42.308 0.00 0.00 44.22 4.63
4631 5823 6.853720 TGGAGAATACTCACTCTTTAACTCG 58.146 40.000 0.00 0.00 44.22 4.18
4632 5824 7.762159 CCTTGGAGAATACTCACTCTTTAACTC 59.238 40.741 0.00 0.00 44.22 3.01
4633 5825 7.616313 CCTTGGAGAATACTCACTCTTTAACT 58.384 38.462 0.00 0.00 44.22 2.24
4634 5826 6.314152 GCCTTGGAGAATACTCACTCTTTAAC 59.686 42.308 0.00 0.00 44.22 2.01
4635 5827 6.407202 GCCTTGGAGAATACTCACTCTTTAA 58.593 40.000 0.00 0.00 44.22 1.52
4636 5828 5.394224 CGCCTTGGAGAATACTCACTCTTTA 60.394 44.000 0.00 0.00 44.22 1.85
4637 5829 4.621747 CGCCTTGGAGAATACTCACTCTTT 60.622 45.833 0.00 0.00 44.22 2.52
4638 5830 3.118956 CGCCTTGGAGAATACTCACTCTT 60.119 47.826 0.00 0.00 44.22 2.85
4639 5831 2.428890 CGCCTTGGAGAATACTCACTCT 59.571 50.000 0.00 0.00 44.22 3.24
4640 5832 2.427453 TCGCCTTGGAGAATACTCACTC 59.573 50.000 0.00 0.00 44.22 3.51
4642 5834 2.094182 TGTCGCCTTGGAGAATACTCAC 60.094 50.000 0.00 0.00 44.22 3.51
4643 5835 2.176045 TGTCGCCTTGGAGAATACTCA 58.824 47.619 0.00 0.00 44.22 3.41
4644 5836 2.961526 TGTCGCCTTGGAGAATACTC 57.038 50.000 0.00 0.00 41.94 2.59
4645 5837 3.055094 ACAATGTCGCCTTGGAGAATACT 60.055 43.478 0.00 0.00 0.00 2.12
4646 5838 3.270877 ACAATGTCGCCTTGGAGAATAC 58.729 45.455 0.00 0.00 0.00 1.89
4647 5839 3.531538 GACAATGTCGCCTTGGAGAATA 58.468 45.455 0.00 0.00 0.00 1.75
4648 5840 2.359900 GACAATGTCGCCTTGGAGAAT 58.640 47.619 0.00 0.00 0.00 2.40
4650 5842 0.036388 GGACAATGTCGCCTTGGAGA 60.036 55.000 7.35 0.00 32.65 3.71
4651 5843 0.036010 AGGACAATGTCGCCTTGGAG 60.036 55.000 7.35 0.00 32.65 3.86
4654 5846 1.522668 TTGAGGACAATGTCGCCTTG 58.477 50.000 7.35 0.00 32.65 3.61
4655 5847 2.270352 TTTGAGGACAATGTCGCCTT 57.730 45.000 7.35 0.00 35.85 4.35
4656 5848 2.270352 TTTTGAGGACAATGTCGCCT 57.730 45.000 7.35 0.00 35.85 5.52
4657 5849 2.933769 CTTTTTGAGGACAATGTCGCC 58.066 47.619 7.35 2.23 35.85 5.54
4665 5857 7.201091 TGGATACACGACCTTTTTGAGGACA 62.201 44.000 0.00 0.00 46.45 4.02
4666 5858 4.801581 TGGATACACGACCTTTTTGAGGAC 60.802 45.833 0.00 0.00 46.45 3.85
4667 5859 3.325425 TGGATACACGACCTTTTTGAGGA 59.675 43.478 0.00 0.00 46.45 3.71
4683 5875 2.489938 TGCTTTGGGACTGTGGATAC 57.510 50.000 0.00 0.00 0.00 2.24
4685 5877 1.915141 CTTGCTTTGGGACTGTGGAT 58.085 50.000 0.00 0.00 0.00 3.41
4686 5878 0.823356 GCTTGCTTTGGGACTGTGGA 60.823 55.000 0.00 0.00 0.00 4.02
4688 5880 0.595095 GAGCTTGCTTTGGGACTGTG 59.405 55.000 0.00 0.00 0.00 3.66
4690 5882 1.580845 CGGAGCTTGCTTTGGGACTG 61.581 60.000 0.00 0.00 0.00 3.51
4691 5883 1.302832 CGGAGCTTGCTTTGGGACT 60.303 57.895 0.00 0.00 0.00 3.85
4692 5884 3.267974 CGGAGCTTGCTTTGGGAC 58.732 61.111 0.00 0.00 0.00 4.46
4706 5898 1.217916 TGATCCCCATTTTAGGCGGA 58.782 50.000 0.00 0.00 34.09 5.54
4708 5900 2.226437 CGATTGATCCCCATTTTAGGCG 59.774 50.000 0.00 0.00 0.00 5.52
4709 5901 3.253432 GTCGATTGATCCCCATTTTAGGC 59.747 47.826 0.00 0.00 0.00 3.93
4710 5902 4.275936 GTGTCGATTGATCCCCATTTTAGG 59.724 45.833 0.00 0.00 0.00 2.69
4711 5903 4.881273 TGTGTCGATTGATCCCCATTTTAG 59.119 41.667 0.00 0.00 0.00 1.85
4712 5904 4.849518 TGTGTCGATTGATCCCCATTTTA 58.150 39.130 0.00 0.00 0.00 1.52
4713 5905 3.696045 TGTGTCGATTGATCCCCATTTT 58.304 40.909 0.00 0.00 0.00 1.82
4714 5906 3.364460 TGTGTCGATTGATCCCCATTT 57.636 42.857 0.00 0.00 0.00 2.32
4715 5907 3.582998 ATGTGTCGATTGATCCCCATT 57.417 42.857 0.00 0.00 0.00 3.16
4716 5908 3.582998 AATGTGTCGATTGATCCCCAT 57.417 42.857 0.00 0.00 0.00 4.00
4717 5909 3.364460 AAATGTGTCGATTGATCCCCA 57.636 42.857 0.00 0.00 0.00 4.96
4719 5911 4.731773 GCTGAAAATGTGTCGATTGATCCC 60.732 45.833 0.00 0.00 0.00 3.85
4720 5912 4.142622 TGCTGAAAATGTGTCGATTGATCC 60.143 41.667 0.00 0.00 0.00 3.36
4721 5913 4.973396 TGCTGAAAATGTGTCGATTGATC 58.027 39.130 0.00 0.00 0.00 2.92
4792 6002 3.181500 GGTTCTGAGTTGTGTTTGTGGAC 60.181 47.826 0.00 0.00 0.00 4.02
4887 6108 4.662961 CCGTCGCTGGCACTGTCA 62.663 66.667 0.00 0.00 0.00 3.58
4923 6147 4.592426 GGTTCTCCGAACGGGAAG 57.408 61.111 13.29 4.66 46.61 3.46
5103 6333 3.948719 GACCCGGGCTTCCACACA 61.949 66.667 24.08 0.00 0.00 3.72
5166 6396 3.047280 GGCGGAACATGCACGACA 61.047 61.111 8.25 0.00 35.30 4.35
5174 6404 3.961838 TTTAGCGGCGGCGGAACAT 62.962 57.895 33.02 8.75 46.35 2.71
5175 6405 4.683721 TTTAGCGGCGGCGGAACA 62.684 61.111 33.02 4.67 46.35 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.