Multiple sequence alignment - TraesCS7A01G096300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G096300 chr7A 100.000 6465 0 0 1 6465 59227692 59234156 0.000000e+00 11939.0
1 TraesCS7A01G096300 chr7A 88.148 1274 87 35 17 1238 59286578 59287839 0.000000e+00 1458.0
2 TraesCS7A01G096300 chr7A 89.412 935 68 21 1934 2844 59288479 59289406 0.000000e+00 1149.0
3 TraesCS7A01G096300 chr7A 82.227 1311 113 66 17 1238 59348085 59349364 0.000000e+00 1020.0
4 TraesCS7A01G096300 chr7A 87.726 831 84 13 4399 5223 59204408 59205226 0.000000e+00 953.0
5 TraesCS7A01G096300 chr7A 81.648 910 113 33 1936 2828 59350030 59350902 0.000000e+00 706.0
6 TraesCS7A01G096300 chr7A 80.273 953 140 22 4148 5072 59292788 59293720 0.000000e+00 675.0
7 TraesCS7A01G096300 chr7A 89.405 538 52 5 5923 6457 59217322 59217857 0.000000e+00 673.0
8 TraesCS7A01G096300 chr7A 93.532 402 26 0 1333 1734 59287880 59288281 3.340000e-167 599.0
9 TraesCS7A01G096300 chr7A 81.740 701 102 14 1936 2617 59202599 59203292 4.380000e-156 562.0
10 TraesCS7A01G096300 chr7A 83.544 632 61 26 17 621 59200831 59201446 9.470000e-153 551.0
11 TraesCS7A01G096300 chr7A 88.785 428 41 3 5228 5648 59205494 59205921 9.610000e-143 518.0
12 TraesCS7A01G096300 chr7A 88.942 416 25 8 1333 1734 59349405 59349813 1.620000e-135 494.0
13 TraesCS7A01G096300 chr7A 81.834 567 54 29 689 1239 59201458 59201991 1.290000e-116 431.0
14 TraesCS7A01G096300 chr7A 84.015 269 26 9 5670 5922 59216753 59217020 6.480000e-60 243.0
15 TraesCS7A01G096300 chr7A 91.603 131 6 2 1802 1932 59288307 59288432 6.660000e-40 176.0
16 TraesCS7A01G096300 chr7A 86.875 160 13 3 3670 3822 59290561 59290719 8.620000e-39 172.0
17 TraesCS7A01G096300 chr7A 91.954 87 6 1 1810 1896 59202427 59202512 3.170000e-23 121.0
18 TraesCS7A01G096300 chr7A 95.652 46 1 1 3233 3277 59230830 59230875 8.990000e-09 73.1
19 TraesCS7A01G096300 chr7A 95.652 46 1 1 3139 3184 59230924 59230968 8.990000e-09 73.1
20 TraesCS7A01G096300 chr7D 87.572 1553 154 22 4399 5922 55269772 55271314 0.000000e+00 1762.0
21 TraesCS7A01G096300 chr7D 86.864 1553 165 22 4399 5922 55252690 55254232 0.000000e+00 1701.0
22 TraesCS7A01G096300 chr7D 91.381 1253 72 22 17 1238 55373479 55374726 0.000000e+00 1683.0
23 TraesCS7A01G096300 chr7D 80.513 1637 219 45 3938 5532 55377633 55379211 0.000000e+00 1164.0
24 TraesCS7A01G096300 chr7D 87.440 1043 71 35 688 1692 55266807 55267827 0.000000e+00 1146.0
25 TraesCS7A01G096300 chr7D 89.577 921 65 23 1944 2843 55375381 55376291 0.000000e+00 1140.0
26 TraesCS7A01G096300 chr7D 83.804 1204 152 24 4385 5577 55390850 55392021 0.000000e+00 1103.0
27 TraesCS7A01G096300 chr7D 80.375 1279 136 68 17 1242 55386449 55387665 0.000000e+00 865.0
28 TraesCS7A01G096300 chr7D 81.877 927 114 31 1936 2832 55388371 55389273 0.000000e+00 732.0
29 TraesCS7A01G096300 chr7D 90.018 551 47 6 5922 6465 55254503 55255052 0.000000e+00 706.0
30 TraesCS7A01G096300 chr7D 90.323 527 43 6 5946 6465 55272040 55272565 0.000000e+00 684.0
31 TraesCS7A01G096300 chr7D 93.284 402 26 1 1333 1734 55374767 55375167 5.580000e-165 592.0
32 TraesCS7A01G096300 chr7D 81.766 702 102 16 1936 2618 55268010 55268704 1.220000e-156 564.0
33 TraesCS7A01G096300 chr7D 82.482 685 62 28 327 987 55249444 55250094 1.230000e-151 547.0
34 TraesCS7A01G096300 chr7D 83.281 634 62 28 17 621 55266178 55266796 1.590000e-150 544.0
35 TraesCS7A01G096300 chr7D 80.857 700 108 15 1938 2618 55250932 55251624 1.600000e-145 527.0
36 TraesCS7A01G096300 chr7D 81.677 644 55 40 1333 1935 55387702 55388323 1.630000e-130 477.0
37 TraesCS7A01G096300 chr7D 86.207 348 23 16 1364 1693 55250410 55250750 2.870000e-93 353.0
38 TraesCS7A01G096300 chr7D 85.231 325 33 9 2899 3216 55376450 55376766 2.910000e-83 320.0
39 TraesCS7A01G096300 chr7D 77.068 532 86 24 5923 6444 5757212 5757717 2.300000e-69 274.0
40 TraesCS7A01G096300 chr7D 82.012 328 37 13 17 326 55248932 55249255 6.430000e-65 259.0
41 TraesCS7A01G096300 chr7D 93.548 155 8 1 1085 1237 55250168 55250322 5.040000e-56 230.0
42 TraesCS7A01G096300 chr7D 86.341 205 24 4 3592 3795 55376962 55377163 3.030000e-53 220.0
43 TraesCS7A01G096300 chr7D 91.791 134 8 2 1802 1935 55375193 55375323 3.980000e-42 183.0
44 TraesCS7A01G096300 chr7D 92.623 122 9 0 2707 2828 55268854 55268975 6.660000e-40 176.0
45 TraesCS7A01G096300 chr7D 91.803 122 10 0 2707 2828 55251774 55251895 3.100000e-38 171.0
46 TraesCS7A01G096300 chr7D 91.262 103 6 1 3301 3400 55376794 55376896 3.140000e-28 137.0
47 TraesCS7A01G096300 chr7D 79.679 187 34 3 5923 6109 213798845 213798663 1.460000e-26 132.0
48 TraesCS7A01G096300 chr4A 86.027 1553 171 22 4399 5922 671526139 671527674 0.000000e+00 1624.0
49 TraesCS7A01G096300 chr4A 86.551 1041 88 32 688 1692 671522851 671523875 0.000000e+00 1099.0
50 TraesCS7A01G096300 chr4A 82.998 1241 168 25 4385 5612 671642645 671643855 0.000000e+00 1083.0
51 TraesCS7A01G096300 chr4A 82.363 1202 177 18 4438 5632 671601340 671602513 0.000000e+00 1013.0
52 TraesCS7A01G096300 chr4A 83.206 917 95 40 456 1346 671596408 671597291 0.000000e+00 785.0
53 TraesCS7A01G096300 chr4A 84.165 701 79 16 1936 2614 671639986 671640676 0.000000e+00 651.0
54 TraesCS7A01G096300 chr4A 89.647 425 41 3 6042 6465 671528225 671528647 7.380000e-149 538.0
55 TraesCS7A01G096300 chr4A 80.878 706 107 20 1936 2621 671524521 671525218 1.230000e-146 531.0
56 TraesCS7A01G096300 chr4A 93.831 308 15 3 17 324 671595762 671596065 1.640000e-125 460.0
57 TraesCS7A01G096300 chr4A 87.273 385 26 6 1333 1702 671597204 671597580 1.000000e-112 418.0
58 TraesCS7A01G096300 chr4A 79.059 659 80 34 17 655 671638178 671638798 3.630000e-107 399.0
59 TraesCS7A01G096300 chr4A 93.133 233 9 4 1333 1559 671639390 671639621 1.040000e-87 335.0
60 TraesCS7A01G096300 chr4A 78.947 532 53 24 2362 2854 671598295 671598806 2.260000e-79 307.0
61 TraesCS7A01G096300 chr4A 77.095 537 86 26 5923 6447 618181694 618181183 6.390000e-70 276.0
62 TraesCS7A01G096300 chr4A 76.852 540 84 28 5923 6447 734899433 734898920 3.840000e-67 267.0
63 TraesCS7A01G096300 chr4A 83.125 320 20 17 1628 1935 671639641 671639938 1.790000e-65 261.0
64 TraesCS7A01G096300 chr4A 81.121 339 43 13 17 340 671521935 671522267 1.080000e-62 252.0
65 TraesCS7A01G096300 chr4A 86.957 184 17 5 2663 2845 671640997 671641174 3.950000e-47 200.0
66 TraesCS7A01G096300 chr4A 94.262 122 7 0 2707 2828 671525617 671525738 3.080000e-43 187.0
67 TraesCS7A01G096300 chr3D 78.072 529 84 22 5923 6442 416929354 416929859 8.140000e-79 305.0
68 TraesCS7A01G096300 chr4D 77.737 539 91 21 5923 6453 505300688 505301205 2.930000e-78 303.0
69 TraesCS7A01G096300 chr6A 77.052 536 88 26 5923 6448 13456012 13455502 6.390000e-70 276.0
70 TraesCS7A01G096300 chr6B 77.363 402 73 16 5944 6336 413928708 413929100 8.440000e-54 222.0
71 TraesCS7A01G096300 chr3B 80.916 262 40 9 6186 6442 543087865 543088121 1.420000e-46 198.0
72 TraesCS7A01G096300 chr7B 79.255 188 32 7 5923 6109 187760115 187760296 2.450000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G096300 chr7A 59227692 59234156 6464 False 4028.400000 11939 97.101333 1 6465 3 chr7A.!!$F3 6464
1 TraesCS7A01G096300 chr7A 59348085 59350902 2817 False 740.000000 1020 84.272333 17 2828 3 chr7A.!!$F5 2811
2 TraesCS7A01G096300 chr7A 59286578 59293720 7142 False 704.833333 1458 88.307167 17 5072 6 chr7A.!!$F4 5055
3 TraesCS7A01G096300 chr7A 59200831 59205921 5090 False 522.666667 953 85.930500 17 5648 6 chr7A.!!$F1 5631
4 TraesCS7A01G096300 chr7A 59216753 59217857 1104 False 458.000000 673 86.710000 5670 6457 2 chr7A.!!$F2 787
5 TraesCS7A01G096300 chr7D 55266178 55272565 6387 False 812.666667 1762 87.167500 17 6465 6 chr7D.!!$F3 6448
6 TraesCS7A01G096300 chr7D 55386449 55392021 5572 False 794.250000 1103 81.933250 17 5577 4 chr7D.!!$F5 5560
7 TraesCS7A01G096300 chr7D 55373479 55379211 5732 False 679.875000 1683 88.672500 17 5532 8 chr7D.!!$F4 5515
8 TraesCS7A01G096300 chr7D 55248932 55255052 6120 False 561.750000 1701 86.723875 17 6465 8 chr7D.!!$F2 6448
9 TraesCS7A01G096300 chr7D 5757212 5757717 505 False 274.000000 274 77.068000 5923 6444 1 chr7D.!!$F1 521
10 TraesCS7A01G096300 chr4A 671521935 671528647 6712 False 705.166667 1624 86.414333 17 6465 6 chr4A.!!$F1 6448
11 TraesCS7A01G096300 chr4A 671595762 671602513 6751 False 596.600000 1013 85.124000 17 5632 5 chr4A.!!$F2 5615
12 TraesCS7A01G096300 chr4A 671638178 671643855 5677 False 488.166667 1083 84.906167 17 5612 6 chr4A.!!$F3 5595
13 TraesCS7A01G096300 chr4A 618181183 618181694 511 True 276.000000 276 77.095000 5923 6447 1 chr4A.!!$R1 524
14 TraesCS7A01G096300 chr4A 734898920 734899433 513 True 267.000000 267 76.852000 5923 6447 1 chr4A.!!$R2 524
15 TraesCS7A01G096300 chr3D 416929354 416929859 505 False 305.000000 305 78.072000 5923 6442 1 chr3D.!!$F1 519
16 TraesCS7A01G096300 chr4D 505300688 505301205 517 False 303.000000 303 77.737000 5923 6453 1 chr4D.!!$F1 530
17 TraesCS7A01G096300 chr6A 13455502 13456012 510 True 276.000000 276 77.052000 5923 6448 1 chr6A.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1867 0.533951 GCCATGGCAAGAAGAAAGGG 59.466 55.0 32.08 0.0 41.49 3.95 F
1041 1969 0.032217 AGAGAGAGGGGGAGAGCAAG 60.032 60.0 0.00 0.0 0.00 4.01 F
1043 1971 0.032217 AGAGAGGGGGAGAGCAAGAG 60.032 60.0 0.00 0.0 0.00 2.85 F
1044 1972 0.032615 GAGAGGGGGAGAGCAAGAGA 60.033 60.0 0.00 0.0 0.00 3.10 F
1062 1990 0.040067 GACGTTTGCCTTGCTCCAAG 60.040 55.0 0.00 0.0 40.75 3.61 F
2082 3843 0.534412 CAGAGATGGGCGAAGTGAGT 59.466 55.0 0.00 0.0 0.00 3.41 F
3449 6124 0.470833 GAGGATGGAGGGAGCTAGCA 60.471 60.0 18.83 0.0 0.00 3.49 F
3756 6627 0.035630 CTGGGGCTTGGAGAAGACTG 60.036 60.0 0.00 0.0 37.38 3.51 F
4598 11094 0.036875 CCTCGTTTGGCTTTCCCTCT 59.963 55.0 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2880 5056 0.312416 TTGTTACCGCCATGTGTTGC 59.688 50.000 0.00 0.0 0.00 4.17 R
2948 5311 2.795329 ACTTCCCGACATCAAAGCAAT 58.205 42.857 0.00 0.0 0.00 3.56 R
2962 5455 3.085119 TAGCCGGCGCTAACTTCCC 62.085 63.158 23.20 0.0 46.08 3.97 R
3026 5625 4.521130 TCTGTAAGTGTCGAGCTTCAAT 57.479 40.909 5.56 0.0 33.76 2.57 R
3058 5657 6.041069 CACAAAAGGGTTATCTTGGGTTGTAA 59.959 38.462 0.00 0.0 29.43 2.41 R
3741 6612 0.036022 AGCACAGTCTTCTCCAAGCC 59.964 55.000 0.00 0.0 0.00 4.35 R
4810 11306 1.001406 CGGTGAAGCTGGAAGAGAACT 59.999 52.381 0.00 0.0 34.07 3.01 R
5089 11588 1.131638 ACCACTTCTCAACTCAGCCA 58.868 50.000 0.00 0.0 0.00 4.75 R
5813 12618 0.390472 CAGAACTCGGGTCTGGAAGC 60.390 60.000 10.17 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 8.915654 GTGTTGATATGTTGATTTCCAAAGAAC 58.084 33.333 0.00 0.00 36.36 3.01
296 339 8.553459 ACCACTTTGACTACTCTAATTCATTG 57.447 34.615 0.00 0.00 0.00 2.82
432 1073 1.630369 TCCTCCACCTCTCACCAAATG 59.370 52.381 0.00 0.00 0.00 2.32
637 1425 2.101575 GTCGGACGTATGCGCTCA 59.898 61.111 9.73 0.00 42.83 4.26
751 1562 6.169094 CACACACATAAATCTCAGTCTCCTT 58.831 40.000 0.00 0.00 0.00 3.36
753 1564 7.173907 CACACACATAAATCTCAGTCTCCTTTT 59.826 37.037 0.00 0.00 0.00 2.27
795 1640 1.627329 TGGCTCTCTGCAAGTCTTCAT 59.373 47.619 0.00 0.00 45.15 2.57
835 1684 1.069978 TGACATTTCTGACGCTGACCA 59.930 47.619 0.00 0.00 0.00 4.02
963 1829 1.299773 GCGTCTAGCTAGCTGCCTG 60.300 63.158 27.68 14.91 44.23 4.85
964 1830 1.299773 CGTCTAGCTAGCTGCCTGC 60.300 63.158 27.68 11.27 44.23 4.85
972 1844 1.830477 GCTAGCTGCCTGCCTCTATAT 59.170 52.381 7.70 0.00 44.23 0.86
987 1859 4.225942 CCTCTATATAAGGCCATGGCAAGA 59.774 45.833 36.56 21.23 44.11 3.02
988 1860 5.280676 CCTCTATATAAGGCCATGGCAAGAA 60.281 44.000 36.56 19.52 44.11 2.52
989 1861 5.809001 TCTATATAAGGCCATGGCAAGAAG 58.191 41.667 36.56 22.18 44.11 2.85
990 1862 4.729552 ATATAAGGCCATGGCAAGAAGA 57.270 40.909 36.56 17.80 44.11 2.87
991 1863 2.897271 TAAGGCCATGGCAAGAAGAA 57.103 45.000 36.56 12.51 44.11 2.52
992 1864 2.014010 AAGGCCATGGCAAGAAGAAA 57.986 45.000 36.56 0.00 44.11 2.52
995 1867 0.533951 GCCATGGCAAGAAGAAAGGG 59.466 55.000 32.08 0.00 41.49 3.95
997 1869 2.250924 CCATGGCAAGAAGAAAGGGTT 58.749 47.619 0.00 0.00 0.00 4.11
999 1871 1.703411 TGGCAAGAAGAAAGGGTTGG 58.297 50.000 0.00 0.00 0.00 3.77
1000 1872 1.216678 TGGCAAGAAGAAAGGGTTGGA 59.783 47.619 0.00 0.00 0.00 3.53
1002 1874 2.035961 GGCAAGAAGAAAGGGTTGGAAC 59.964 50.000 0.00 0.00 0.00 3.62
1038 1966 0.539669 GCTAGAGAGAGGGGGAGAGC 60.540 65.000 0.00 0.00 0.00 4.09
1039 1967 0.850100 CTAGAGAGAGGGGGAGAGCA 59.150 60.000 0.00 0.00 0.00 4.26
1041 1969 0.032217 AGAGAGAGGGGGAGAGCAAG 60.032 60.000 0.00 0.00 0.00 4.01
1042 1970 0.032615 GAGAGAGGGGGAGAGCAAGA 60.033 60.000 0.00 0.00 0.00 3.02
1043 1971 0.032217 AGAGAGGGGGAGAGCAAGAG 60.032 60.000 0.00 0.00 0.00 2.85
1044 1972 0.032615 GAGAGGGGGAGAGCAAGAGA 60.033 60.000 0.00 0.00 0.00 3.10
1045 1973 0.325203 AGAGGGGGAGAGCAAGAGAC 60.325 60.000 0.00 0.00 0.00 3.36
1046 1974 1.671901 GAGGGGGAGAGCAAGAGACG 61.672 65.000 0.00 0.00 0.00 4.18
1047 1975 1.985116 GGGGGAGAGCAAGAGACGT 60.985 63.158 0.00 0.00 0.00 4.34
1048 1976 1.545706 GGGGGAGAGCAAGAGACGTT 61.546 60.000 0.00 0.00 0.00 3.99
1049 1977 0.321996 GGGGAGAGCAAGAGACGTTT 59.678 55.000 0.00 0.00 0.00 3.60
1050 1978 1.433534 GGGAGAGCAAGAGACGTTTG 58.566 55.000 0.00 0.00 0.00 2.93
1055 1983 3.461843 GCAAGAGACGTTTGCCTTG 57.538 52.632 11.53 12.16 43.88 3.61
1056 1984 3.461843 CAAGAGACGTTTGCCTTGC 57.538 52.632 0.00 0.00 31.11 4.01
1057 1985 0.947244 CAAGAGACGTTTGCCTTGCT 59.053 50.000 0.00 0.00 31.11 3.91
1058 1986 1.069636 CAAGAGACGTTTGCCTTGCTC 60.070 52.381 0.00 0.00 31.11 4.26
1059 1987 0.603975 AGAGACGTTTGCCTTGCTCC 60.604 55.000 0.00 0.00 0.00 4.70
1060 1988 0.884704 GAGACGTTTGCCTTGCTCCA 60.885 55.000 0.00 0.00 0.00 3.86
1061 1989 0.465460 AGACGTTTGCCTTGCTCCAA 60.465 50.000 0.00 0.00 0.00 3.53
1062 1990 0.040067 GACGTTTGCCTTGCTCCAAG 60.040 55.000 0.00 0.00 40.75 3.61
1103 2052 3.515502 TGTGAAAGGAGACCGAGATGATT 59.484 43.478 0.00 0.00 0.00 2.57
1124 2076 2.899505 GGAGACCAGAGGCAGCTC 59.100 66.667 0.00 0.00 0.00 4.09
1139 2091 2.125147 CTCGGCGGCCATGAAGAA 60.125 61.111 20.71 0.00 0.00 2.52
1141 2093 2.745884 CGGCGGCCATGAAGAACA 60.746 61.111 20.71 0.00 0.00 3.18
1145 2097 0.744414 GCGGCCATGAAGAACAGCTA 60.744 55.000 2.24 0.00 0.00 3.32
1259 2246 9.090103 TGAATAAGTATGGATAAGACTAGTGGG 57.910 37.037 0.00 0.00 0.00 4.61
1325 2312 5.416952 GTGGTTCTTGAATCTTGATCCATGT 59.583 40.000 8.29 0.00 33.74 3.21
1609 2776 2.553602 TCATGTTGGTGTTGCAGATGAC 59.446 45.455 0.00 0.00 0.00 3.06
1669 2836 2.694628 TCTTGCAAAACCAGTCAAGCAT 59.305 40.909 0.00 0.00 36.71 3.79
1754 2971 1.538666 GGCAGGGCCTGGTATTGAT 59.461 57.895 33.43 0.00 46.69 2.57
1900 3125 8.998277 AAGAACCTACATCTATTAGCTACAGA 57.002 34.615 6.68 6.68 0.00 3.41
2029 3790 7.395206 TCTCTGATGTGATGGTTTCATTGATTT 59.605 33.333 0.00 0.00 36.54 2.17
2082 3843 0.534412 CAGAGATGGGCGAAGTGAGT 59.466 55.000 0.00 0.00 0.00 3.41
2177 3938 2.459969 TTCTCCACCAGCAAGGGCA 61.460 57.895 0.04 0.00 44.61 5.36
2288 4073 0.622136 ATGAGCAGGCAGAACATGGA 59.378 50.000 0.00 0.00 0.00 3.41
2293 4078 1.200948 GCAGGCAGAACATGGAAGAAC 59.799 52.381 0.00 0.00 0.00 3.01
2387 4172 2.086869 CGGTGCAAGAACTGATGGAAT 58.913 47.619 0.00 0.00 0.00 3.01
2403 4188 2.151202 GGAATTGAGACGAAGGTGCAA 58.849 47.619 0.00 0.00 0.00 4.08
2466 4257 3.050275 GCCGCCACAGAGACAACC 61.050 66.667 0.00 0.00 0.00 3.77
2467 4258 2.425592 CCGCCACAGAGACAACCA 59.574 61.111 0.00 0.00 0.00 3.67
2468 4259 1.961277 CCGCCACAGAGACAACCAC 60.961 63.158 0.00 0.00 0.00 4.16
2469 4260 1.227527 CGCCACAGAGACAACCACA 60.228 57.895 0.00 0.00 0.00 4.17
2470 4261 0.813610 CGCCACAGAGACAACCACAA 60.814 55.000 0.00 0.00 0.00 3.33
2471 4262 1.609208 GCCACAGAGACAACCACAAT 58.391 50.000 0.00 0.00 0.00 2.71
2473 4264 3.347216 GCCACAGAGACAACCACAATAT 58.653 45.455 0.00 0.00 0.00 1.28
2475 4266 3.618594 CCACAGAGACAACCACAATATCG 59.381 47.826 0.00 0.00 0.00 2.92
2498 4289 1.930908 GCGAGCAAGGCAGCAAAGAT 61.931 55.000 4.78 0.00 35.33 2.40
2511 4302 0.539051 CAAAGATCCCGAGGAGCACT 59.461 55.000 10.22 2.44 41.08 4.40
2514 4305 1.758514 GATCCCGAGGAGCACTGGA 60.759 63.158 3.67 0.00 38.12 3.86
2517 4308 2.363018 CCGAGGAGCACTGGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
2529 4323 2.444895 GGAGGAGTGGAGGCCGAT 60.445 66.667 0.00 0.00 0.00 4.18
2624 4429 5.766222 GGTACGTACATACATACTCCAAGG 58.234 45.833 26.02 0.00 0.00 3.61
2626 4431 4.539726 ACGTACATACATACTCCAAGGGA 58.460 43.478 0.00 0.00 0.00 4.20
2627 4432 4.957954 ACGTACATACATACTCCAAGGGAA 59.042 41.667 0.00 0.00 0.00 3.97
2658 4753 9.838339 ATAAGAACTTAGATGGTAAATGAGTGG 57.162 33.333 0.00 0.00 0.00 4.00
2703 4879 3.378112 AGATGTATGGTTTGTTGGCGATG 59.622 43.478 0.00 0.00 0.00 3.84
2760 4936 1.546548 GGGCAGAAGATATCCAAGGGC 60.547 57.143 0.00 0.00 0.00 5.19
2793 4969 1.982395 TGCCTACTACCGCTGCACT 60.982 57.895 0.00 0.00 0.00 4.40
2828 5004 1.410004 CCCGTCAGGAAGCAGGTATA 58.590 55.000 0.00 0.00 41.02 1.47
2832 5008 4.382040 CCCGTCAGGAAGCAGGTATATATG 60.382 50.000 0.00 0.00 41.02 1.78
2833 5009 4.462834 CCGTCAGGAAGCAGGTATATATGA 59.537 45.833 0.00 0.00 41.02 2.15
2834 5010 5.047306 CCGTCAGGAAGCAGGTATATATGAA 60.047 44.000 0.00 0.00 41.02 2.57
2835 5011 6.351371 CCGTCAGGAAGCAGGTATATATGAAT 60.351 42.308 0.00 0.00 41.02 2.57
2838 5014 7.550906 GTCAGGAAGCAGGTATATATGAATTCC 59.449 40.741 2.27 10.18 35.58 3.01
2839 5015 6.825721 CAGGAAGCAGGTATATATGAATTCCC 59.174 42.308 2.27 0.00 35.79 3.97
2855 5031 7.692460 TGAATTCCCTGCATGATCAATATAC 57.308 36.000 0.00 0.00 0.00 1.47
2856 5032 7.232910 TGAATTCCCTGCATGATCAATATACA 58.767 34.615 0.00 0.00 0.00 2.29
2857 5033 7.891712 TGAATTCCCTGCATGATCAATATACAT 59.108 33.333 0.00 0.00 0.00 2.29
2858 5034 7.640597 ATTCCCTGCATGATCAATATACATG 57.359 36.000 0.00 0.00 42.60 3.21
2867 5043 5.941733 TGATCAATATACATGCCGAAATGC 58.058 37.500 0.00 0.00 0.00 3.56
2871 5047 0.662619 ATACATGCCGAAATGCCACG 59.337 50.000 0.00 0.00 0.00 4.94
2891 5067 2.783284 CGAAATAATCGCAACACATGGC 59.217 45.455 0.00 0.00 45.89 4.40
2903 5079 3.296322 ACACATGGCGGTAACAAAATG 57.704 42.857 0.00 0.00 0.00 2.32
2904 5080 2.625790 ACACATGGCGGTAACAAAATGT 59.374 40.909 0.00 0.00 33.87 2.71
2907 5083 3.572255 ACATGGCGGTAACAAAATGTCTT 59.428 39.130 0.00 0.00 29.20 3.01
2909 5085 5.241949 ACATGGCGGTAACAAAATGTCTTTA 59.758 36.000 0.00 0.00 29.20 1.85
2916 5108 7.364200 CGGTAACAAAATGTCTTTATGTTCCA 58.636 34.615 0.00 0.00 35.89 3.53
2941 5304 5.830000 AACCAAACTTGACCAAGAACTAC 57.170 39.130 15.84 0.00 40.79 2.73
2948 5311 6.169557 ACTTGACCAAGAACTACACATGTA 57.830 37.500 15.84 0.00 40.79 2.29
2962 5455 4.973396 ACACATGTATTGCTTTGATGTCG 58.027 39.130 0.00 0.00 0.00 4.35
2970 5567 3.410631 TGCTTTGATGTCGGGAAGTTA 57.589 42.857 0.00 0.00 0.00 2.24
3049 5648 5.638596 TTGAAGCTCGACACTTACAGATA 57.361 39.130 0.00 0.00 0.00 1.98
3133 5735 7.769220 ACATTGCTTTCCAAAGAGATCTAATG 58.231 34.615 0.00 0.03 38.28 1.90
3136 5738 7.849804 TGCTTTCCAAAGAGATCTAATGTAC 57.150 36.000 0.00 0.00 38.28 2.90
3148 5750 4.906065 TCTAATGTACGTCGTATTGGCT 57.094 40.909 8.59 0.00 0.00 4.75
3150 5752 2.218953 ATGTACGTCGTATTGGCTGG 57.781 50.000 8.59 0.00 0.00 4.85
3154 5764 0.968901 ACGTCGTATTGGCTGGGAGA 60.969 55.000 0.00 0.00 0.00 3.71
3175 5785 6.591448 GGAGAATTCTTATGTTTGCCCAAAAG 59.409 38.462 9.87 0.00 31.33 2.27
3189 5799 3.005791 GCCCAAAAGTTAGCAAGATGTGT 59.994 43.478 0.00 0.00 0.00 3.72
3234 5844 6.530913 TCAAGATGTGTTTCTCTTTTCTCG 57.469 37.500 0.00 0.00 29.34 4.04
3235 5845 6.049149 TCAAGATGTGTTTCTCTTTTCTCGT 58.951 36.000 0.00 0.00 29.34 4.18
3236 5846 7.207383 TCAAGATGTGTTTCTCTTTTCTCGTA 58.793 34.615 0.00 0.00 29.34 3.43
3237 5847 7.872993 TCAAGATGTGTTTCTCTTTTCTCGTAT 59.127 33.333 0.00 0.00 29.34 3.06
3238 5848 8.499162 CAAGATGTGTTTCTCTTTTCTCGTATT 58.501 33.333 0.00 0.00 29.34 1.89
3239 5849 8.023050 AGATGTGTTTCTCTTTTCTCGTATTG 57.977 34.615 0.00 0.00 0.00 1.90
3240 5850 6.539649 TGTGTTTCTCTTTTCTCGTATTGG 57.460 37.500 0.00 0.00 0.00 3.16
3241 5851 5.049680 TGTGTTTCTCTTTTCTCGTATTGGC 60.050 40.000 0.00 0.00 0.00 4.52
3242 5852 5.179555 GTGTTTCTCTTTTCTCGTATTGGCT 59.820 40.000 0.00 0.00 0.00 4.75
3243 5853 5.179368 TGTTTCTCTTTTCTCGTATTGGCTG 59.821 40.000 0.00 0.00 0.00 4.85
3244 5854 3.861840 TCTCTTTTCTCGTATTGGCTGG 58.138 45.455 0.00 0.00 0.00 4.85
3245 5855 2.939103 CTCTTTTCTCGTATTGGCTGGG 59.061 50.000 0.00 0.00 0.00 4.45
3246 5856 2.569853 TCTTTTCTCGTATTGGCTGGGA 59.430 45.455 0.00 0.00 0.00 4.37
3247 5857 2.691409 TTTCTCGTATTGGCTGGGAG 57.309 50.000 0.00 0.00 0.00 4.30
3248 5858 1.860641 TTCTCGTATTGGCTGGGAGA 58.139 50.000 0.00 0.00 32.30 3.71
3249 5859 1.860641 TCTCGTATTGGCTGGGAGAA 58.139 50.000 0.00 0.00 31.29 2.87
3250 5860 2.398588 TCTCGTATTGGCTGGGAGAAT 58.601 47.619 0.00 0.00 31.29 2.40
3251 5861 2.771943 TCTCGTATTGGCTGGGAGAATT 59.228 45.455 0.00 0.00 31.29 2.17
3252 5862 3.134458 CTCGTATTGGCTGGGAGAATTC 58.866 50.000 0.00 0.00 0.00 2.17
3253 5863 2.771943 TCGTATTGGCTGGGAGAATTCT 59.228 45.455 7.95 7.95 0.00 2.40
3254 5864 3.199946 TCGTATTGGCTGGGAGAATTCTT 59.800 43.478 9.87 0.00 0.00 2.52
3255 5865 4.407621 TCGTATTGGCTGGGAGAATTCTTA 59.592 41.667 9.87 0.00 0.00 2.10
3256 5866 5.071788 TCGTATTGGCTGGGAGAATTCTTAT 59.928 40.000 9.87 0.00 0.00 1.73
3257 5867 5.180117 CGTATTGGCTGGGAGAATTCTTATG 59.820 44.000 9.87 2.27 0.00 1.90
3258 5868 4.591321 TTGGCTGGGAGAATTCTTATGT 57.409 40.909 9.87 0.00 0.00 2.29
3259 5869 4.591321 TGGCTGGGAGAATTCTTATGTT 57.409 40.909 9.87 0.00 0.00 2.71
3260 5870 4.934356 TGGCTGGGAGAATTCTTATGTTT 58.066 39.130 9.87 0.00 0.00 2.83
3261 5871 4.706476 TGGCTGGGAGAATTCTTATGTTTG 59.294 41.667 9.87 0.00 0.00 2.93
3262 5872 4.440663 GGCTGGGAGAATTCTTATGTTTGC 60.441 45.833 9.87 8.01 0.00 3.68
3263 5873 4.440663 GCTGGGAGAATTCTTATGTTTGCC 60.441 45.833 9.87 3.25 0.00 4.52
3264 5874 4.023291 TGGGAGAATTCTTATGTTTGCCC 58.977 43.478 9.87 12.85 0.00 5.36
3265 5875 4.023291 GGGAGAATTCTTATGTTTGCCCA 58.977 43.478 9.87 0.00 0.00 5.36
3266 5876 4.466015 GGGAGAATTCTTATGTTTGCCCAA 59.534 41.667 9.87 0.00 0.00 4.12
3267 5877 5.046663 GGGAGAATTCTTATGTTTGCCCAAA 60.047 40.000 9.87 0.00 0.00 3.28
3268 5878 6.101997 GGAGAATTCTTATGTTTGCCCAAAG 58.898 40.000 9.87 0.00 0.00 2.77
3269 5879 6.295292 GGAGAATTCTTATGTTTGCCCAAAGT 60.295 38.462 9.87 0.00 0.00 2.66
3270 5880 7.066307 AGAATTCTTATGTTTGCCCAAAGTT 57.934 32.000 0.88 0.00 0.00 2.66
3271 5881 8.189119 AGAATTCTTATGTTTGCCCAAAGTTA 57.811 30.769 0.88 0.00 0.00 2.24
3272 5882 8.815912 AGAATTCTTATGTTTGCCCAAAGTTAT 58.184 29.630 0.88 0.00 0.00 1.89
3273 5883 9.087424 GAATTCTTATGTTTGCCCAAAGTTATC 57.913 33.333 0.00 0.00 0.00 1.75
3274 5884 7.531857 TTCTTATGTTTGCCCAAAGTTATCA 57.468 32.000 0.00 0.00 0.00 2.15
3359 6032 4.201783 GCACGATCAACTAAATTAAGCCGT 60.202 41.667 0.00 0.00 0.00 5.68
3362 6035 5.063060 ACGATCAACTAAATTAAGCCGTCAC 59.937 40.000 0.00 0.00 0.00 3.67
3406 6081 4.818546 CGTCCAGAATCCATTAATCAAGCT 59.181 41.667 0.00 0.00 0.00 3.74
3408 6083 6.146837 CGTCCAGAATCCATTAATCAAGCTAG 59.853 42.308 0.00 0.00 0.00 3.42
3411 6086 5.468072 CAGAATCCATTAATCAAGCTAGCGT 59.532 40.000 9.55 2.32 0.00 5.07
3413 6088 5.679734 ATCCATTAATCAAGCTAGCGTTG 57.320 39.130 9.55 13.81 0.00 4.10
3449 6124 0.470833 GAGGATGGAGGGAGCTAGCA 60.471 60.000 18.83 0.00 0.00 3.49
3463 6138 2.305927 AGCTAGCAGGCCTAAACAGAAA 59.694 45.455 18.83 0.00 0.00 2.52
3472 6147 3.439129 GGCCTAAACAGAAAAGCACGTAT 59.561 43.478 0.00 0.00 0.00 3.06
3543 6229 4.293671 CGGGGAGGTGGGGCAAAA 62.294 66.667 0.00 0.00 0.00 2.44
3544 6230 2.603473 GGGGAGGTGGGGCAAAAC 60.603 66.667 0.00 0.00 0.00 2.43
3557 6243 4.717313 AAAACGGGCGCCTCTCCC 62.717 66.667 28.56 8.15 40.43 4.30
3600 6291 1.676678 GGTGCTCTCTGGCGGTGATA 61.677 60.000 0.00 0.00 34.52 2.15
3622 6313 4.722535 TCCCTCCCCTCGCTTGCT 62.723 66.667 0.00 0.00 0.00 3.91
3651 6357 2.192608 CTTCTCCGGCAACAGCAAGC 62.193 60.000 0.00 0.00 0.00 4.01
3668 6535 4.054455 CGCGTCGTCGTTGGGTTG 62.054 66.667 0.00 0.00 39.49 3.77
3679 6546 1.338674 CGTTGGGTTGTAGGCTGATCA 60.339 52.381 0.00 0.00 0.00 2.92
3729 6600 2.436646 CAGTGGCCGATGGTGGTC 60.437 66.667 0.00 0.00 0.00 4.02
3739 6610 2.477825 CGATGGTGGTCTAGAATGCTG 58.522 52.381 0.00 0.00 0.00 4.41
3741 6612 0.911769 TGGTGGTCTAGAATGCTGGG 59.088 55.000 0.00 0.00 0.00 4.45
3744 6615 0.621571 TGGTCTAGAATGCTGGGGCT 60.622 55.000 0.00 0.00 39.59 5.19
3756 6627 0.035630 CTGGGGCTTGGAGAAGACTG 60.036 60.000 0.00 0.00 37.38 3.51
3759 6630 0.957888 GGGCTTGGAGAAGACTGTGC 60.958 60.000 0.00 0.00 37.38 4.57
3799 6687 3.662153 CGCCACATGTGTGCTGCA 61.662 61.111 26.29 0.00 44.34 4.41
3822 6710 2.242043 CCCACTTCAAGCAAGTCCAAT 58.758 47.619 0.00 0.00 44.14 3.16
3826 6714 4.202141 CCACTTCAAGCAAGTCCAATCAAA 60.202 41.667 0.00 0.00 44.14 2.69
3827 6715 4.741676 CACTTCAAGCAAGTCCAATCAAAC 59.258 41.667 0.00 0.00 44.14 2.93
3834 6722 4.279420 AGCAAGTCCAATCAAACTTTCCTC 59.721 41.667 0.00 0.00 33.53 3.71
3896 7286 9.923143 TGTACCTAATGTCGAAAATATATCCAG 57.077 33.333 0.00 0.00 0.00 3.86
3904 7294 8.149973 TGTCGAAAATATATCCAGGCTAAAAC 57.850 34.615 0.00 0.00 0.00 2.43
3910 7300 2.828661 ATCCAGGCTAAAACTTCCCC 57.171 50.000 0.00 0.00 0.00 4.81
3911 7301 0.702316 TCCAGGCTAAAACTTCCCCC 59.298 55.000 0.00 0.00 0.00 5.40
3929 7326 4.228438 TCCCCCAAAAATTGAAAACAACCT 59.772 37.500 0.00 0.00 0.00 3.50
4033 7567 2.482336 TGTGGTAGCTTTAACATGCACG 59.518 45.455 0.00 0.00 0.00 5.34
4152 9312 8.683550 TGATAGAAGTAAATTGTGTGTACTCG 57.316 34.615 0.00 0.00 0.00 4.18
4229 9390 8.075593 GTGCAACAAGTTCATGTAAAAATGAT 57.924 30.769 0.00 0.00 34.84 2.45
4241 9402 8.710551 TCATGTAAAAATGATTGTGCACATTTC 58.289 29.630 22.39 20.06 43.07 2.17
4249 9410 1.165284 TGTGCACATTTCTGCGCTCA 61.165 50.000 17.42 0.00 46.04 4.26
4250 9411 0.169672 GTGCACATTTCTGCGCTCAT 59.830 50.000 13.17 0.00 43.15 2.90
4292 9487 3.505680 CACTTTGGTAATAGCAGTGGCAA 59.494 43.478 0.00 0.00 44.61 4.52
4315 9510 7.318141 CAAGGATTTGCACTTGAACTAATCAT 58.682 34.615 8.68 0.00 45.22 2.45
4320 9515 9.624697 GATTTGCACTTGAACTAATCATGTTTA 57.375 29.630 0.00 0.00 42.09 2.01
4371 10654 9.988350 TCATTTAAAACTCGCTCTCATATTTTC 57.012 29.630 0.00 0.00 0.00 2.29
4419 10909 0.250295 ACCATGGTGACCAACTGACG 60.250 55.000 18.99 0.00 36.95 4.35
4420 10910 1.577328 CCATGGTGACCAACTGACGC 61.577 60.000 9.06 0.00 36.95 5.19
4421 10911 0.884259 CATGGTGACCAACTGACGCA 60.884 55.000 9.06 0.00 36.95 5.24
4422 10912 0.884704 ATGGTGACCAACTGACGCAC 60.885 55.000 9.06 0.00 36.95 5.34
4424 10914 0.884704 GGTGACCAACTGACGCACAT 60.885 55.000 0.00 0.00 0.00 3.21
4425 10915 1.606994 GGTGACCAACTGACGCACATA 60.607 52.381 0.00 0.00 0.00 2.29
4426 10916 1.459592 GTGACCAACTGACGCACATAC 59.540 52.381 0.00 0.00 0.00 2.39
4427 10917 1.069358 TGACCAACTGACGCACATACA 59.931 47.619 0.00 0.00 0.00 2.29
4428 10918 2.289382 TGACCAACTGACGCACATACAT 60.289 45.455 0.00 0.00 0.00 2.29
4432 10928 4.158384 CCAACTGACGCACATACATTTTC 58.842 43.478 0.00 0.00 0.00 2.29
4433 10929 4.158384 CAACTGACGCACATACATTTTCC 58.842 43.478 0.00 0.00 0.00 3.13
4592 11088 0.537371 CCTCCACCTCGTTTGGCTTT 60.537 55.000 0.00 0.00 33.71 3.51
4597 11093 0.250770 ACCTCGTTTGGCTTTCCCTC 60.251 55.000 0.00 0.00 0.00 4.30
4598 11094 0.036875 CCTCGTTTGGCTTTCCCTCT 59.963 55.000 0.00 0.00 0.00 3.69
4599 11095 1.160137 CTCGTTTGGCTTTCCCTCTG 58.840 55.000 0.00 0.00 0.00 3.35
4600 11096 0.889186 TCGTTTGGCTTTCCCTCTGC 60.889 55.000 0.00 0.00 0.00 4.26
4601 11097 1.866853 CGTTTGGCTTTCCCTCTGCC 61.867 60.000 0.00 0.00 46.26 4.85
4796 11292 2.328099 GCAACACGCCTTCTCCCTG 61.328 63.158 0.00 0.00 32.94 4.45
4803 11299 0.393537 CGCCTTCTCCCTGAGCAATT 60.394 55.000 0.00 0.00 0.00 2.32
4810 11306 1.614903 CTCCCTGAGCAATTGCAACAA 59.385 47.619 30.89 14.51 45.16 2.83
4817 11313 3.633525 TGAGCAATTGCAACAAGTTCTCT 59.366 39.130 30.89 6.65 45.16 3.10
4967 11466 1.457643 CCTGGGCTACGGATCCTCA 60.458 63.158 10.75 0.00 0.00 3.86
5119 11618 4.284550 AAGTGGTGGCACGGGCAT 62.285 61.111 13.89 0.00 43.71 4.40
5210 11718 0.325602 TCACAGCTGCCATCACATCA 59.674 50.000 15.27 0.00 0.00 3.07
5223 11731 1.203758 TCACATCATACGTCGGCAAGT 59.796 47.619 0.00 0.00 0.00 3.16
5387 12172 0.904865 AGATGAGGTTGGAGCCGTCA 60.905 55.000 0.00 0.00 0.00 4.35
5432 12220 0.247735 CTACTGCTTCGACGTCTCGG 60.248 60.000 14.70 7.51 40.58 4.63
5442 12230 0.526662 GACGTCTCGGGTGTGAAGAT 59.473 55.000 8.70 0.00 0.00 2.40
5452 12240 2.286872 GGTGTGAAGATCATGGAGCAG 58.713 52.381 0.00 0.00 0.00 4.24
5460 12252 5.763698 TGAAGATCATGGAGCAGATCAATTC 59.236 40.000 0.00 0.00 42.36 2.17
5472 12264 5.236047 AGCAGATCAATTCGTTAGATGAAGC 59.764 40.000 0.00 0.00 0.00 3.86
5479 12272 8.131455 TCAATTCGTTAGATGAAGCTTATGAC 57.869 34.615 0.00 0.00 0.00 3.06
5577 12371 6.072618 GGATTGATTCATCATTCACAGCCTAG 60.073 42.308 11.81 0.00 38.35 3.02
5632 12428 5.181811 GCTATTTGCTTTTGCCTGGAAAAAT 59.818 36.000 12.94 0.96 46.87 1.82
5648 12445 5.875910 TGGAAAAATTGGTGCAATGATCATC 59.124 36.000 9.06 0.00 34.04 2.92
5681 12485 6.126303 ACTCAGATAGGAGAGTTACTAAGCCT 60.126 42.308 5.66 5.66 42.12 4.58
5733 12538 1.395826 GCCCTCTGCCACTATCGACT 61.396 60.000 0.00 0.00 0.00 4.18
5735 12540 0.309302 CCTCTGCCACTATCGACTCG 59.691 60.000 0.00 0.00 0.00 4.18
5799 12604 3.939592 AGCGGAAACAAGTAATCTTAGGC 59.060 43.478 0.00 0.00 32.07 3.93
5813 12618 3.861840 TCTTAGGCTCCGTTTGATTCAG 58.138 45.455 0.00 0.00 0.00 3.02
5824 12629 2.489722 GTTTGATTCAGCTTCCAGACCC 59.510 50.000 0.00 0.00 0.00 4.46
5828 12633 0.832135 TTCAGCTTCCAGACCCGAGT 60.832 55.000 0.00 0.00 0.00 4.18
5835 12640 1.420430 TCCAGACCCGAGTTCTGTTT 58.580 50.000 7.00 0.00 0.00 2.83
5862 12667 8.366401 TGAAATGTCAAAAGCTAATCAAATGGA 58.634 29.630 0.00 0.00 0.00 3.41
5879 12699 4.823790 ATGGAAAACTTACACGACAACC 57.176 40.909 0.00 0.00 0.00 3.77
5884 12704 4.870221 AAACTTACACGACAACCACTTC 57.130 40.909 0.00 0.00 0.00 3.01
5941 13231 4.675029 AACCACGGGCCGAAGTCG 62.675 66.667 35.78 16.16 39.44 4.18
5975 13498 9.177608 CTTCTTCCACTATTATCAAATGTGGAA 57.822 33.333 20.13 20.13 46.67 3.53
5993 13518 4.008330 TGGAAACACAACACGTTTTCCTA 58.992 39.130 21.61 10.24 41.03 2.94
5996 13521 6.487331 TGGAAACACAACACGTTTTCCTATAT 59.513 34.615 21.61 0.00 41.03 0.86
6029 13555 7.893124 AGAGGCAATCATACATCAAGATTTT 57.107 32.000 0.00 0.00 30.04 1.82
6032 13558 6.759827 AGGCAATCATACATCAAGATTTTTGC 59.240 34.615 0.00 0.00 30.04 3.68
6067 13593 6.043127 AGGAAAAACAAGATTAGGGTTTGCAT 59.957 34.615 0.00 0.00 35.14 3.96
6068 13594 7.234577 AGGAAAAACAAGATTAGGGTTTGCATA 59.765 33.333 0.00 0.00 35.14 3.14
6094 13620 4.664688 AGGGATTGAAACAATCTCACCT 57.335 40.909 21.21 16.26 29.59 4.00
6135 13661 2.635427 ACTTGAAGGAGAGAAGGTGGTC 59.365 50.000 0.00 0.00 0.00 4.02
6138 13664 2.368875 TGAAGGAGAGAAGGTGGTCAAC 59.631 50.000 0.00 0.00 0.00 3.18
6180 13708 3.071874 TGGATTCCTTTGCTTGATCGT 57.928 42.857 3.95 0.00 0.00 3.73
6181 13709 3.420893 TGGATTCCTTTGCTTGATCGTT 58.579 40.909 3.95 0.00 0.00 3.85
6214 13744 4.223923 TCTTCAATCTTCCTCACTCCCTTC 59.776 45.833 0.00 0.00 0.00 3.46
6284 13815 1.398692 TGTTGTTCTTCTTGGTGGCC 58.601 50.000 0.00 0.00 0.00 5.36
6293 13824 1.221840 CTTGGTGGCCGCTAGATGT 59.778 57.895 17.49 0.00 0.00 3.06
6316 13847 1.354705 GGCTATACATCCCCTTTCCCC 59.645 57.143 0.00 0.00 0.00 4.81
6330 13861 0.187117 TTCCCCCATGTGCAAAGTCA 59.813 50.000 0.00 0.00 0.00 3.41
6444 13982 3.906218 TCCACATGAAGAGGATATCCCAG 59.094 47.826 18.56 6.04 37.41 4.45
6458 13996 1.918293 CCCAGCACCTCTACCACCA 60.918 63.158 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.669477 ACACAGTAAACAAATGCACCATTT 58.331 33.333 0.00 0.00 43.71 2.32
11 12 5.275067 ACACAGTAAACAAATGCACCATT 57.725 34.783 0.00 0.00 35.39 3.16
12 13 4.935352 ACACAGTAAACAAATGCACCAT 57.065 36.364 0.00 0.00 0.00 3.55
13 14 4.158579 TCAACACAGTAAACAAATGCACCA 59.841 37.500 0.00 0.00 0.00 4.17
14 15 4.677584 TCAACACAGTAAACAAATGCACC 58.322 39.130 0.00 0.00 0.00 5.01
15 16 7.594758 ACATATCAACACAGTAAACAAATGCAC 59.405 33.333 0.00 0.00 0.00 4.57
56 58 3.786635 GTAGTGGACTACTTGCATGGAG 58.213 50.000 10.23 10.23 44.06 3.86
277 320 9.208022 CACAGAACAATGAATTAGAGTAGTCAA 57.792 33.333 0.00 0.00 0.00 3.18
403 1042 3.717294 GGTGGAGGACATGGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
581 1348 2.358369 TCCTCGTCGTCAGCGTCT 60.358 61.111 0.00 0.00 39.49 4.18
587 1366 2.596338 TGCCAGTCCTCGTCGTCA 60.596 61.111 0.00 0.00 0.00 4.35
637 1425 1.790623 GACTGTGTTATGTGCGTCGTT 59.209 47.619 0.00 0.00 0.00 3.85
644 1432 1.726791 GCGTCCAGACTGTGTTATGTG 59.273 52.381 0.93 0.00 0.00 3.21
795 1640 0.463654 AACACAGCCGCACTCTTTGA 60.464 50.000 0.00 0.00 0.00 2.69
964 1830 4.225942 TCTTGCCATGGCCTTATATAGAGG 59.774 45.833 33.44 12.20 41.09 3.69
972 1844 2.897271 TTCTTCTTGCCATGGCCTTA 57.103 45.000 33.44 17.61 41.09 2.69
987 1859 3.680777 TCCAAGTTCCAACCCTTTCTT 57.319 42.857 0.00 0.00 0.00 2.52
988 1860 3.566351 CTTCCAAGTTCCAACCCTTTCT 58.434 45.455 0.00 0.00 0.00 2.52
989 1861 2.628178 CCTTCCAAGTTCCAACCCTTTC 59.372 50.000 0.00 0.00 0.00 2.62
990 1862 2.677914 CCTTCCAAGTTCCAACCCTTT 58.322 47.619 0.00 0.00 0.00 3.11
991 1863 1.757764 GCCTTCCAAGTTCCAACCCTT 60.758 52.381 0.00 0.00 0.00 3.95
992 1864 0.178961 GCCTTCCAAGTTCCAACCCT 60.179 55.000 0.00 0.00 0.00 4.34
995 1867 3.008049 TCTCTAGCCTTCCAAGTTCCAAC 59.992 47.826 0.00 0.00 0.00 3.77
997 1869 2.902608 TCTCTAGCCTTCCAAGTTCCA 58.097 47.619 0.00 0.00 0.00 3.53
999 1871 3.266636 GCTTCTCTAGCCTTCCAAGTTC 58.733 50.000 0.00 0.00 44.48 3.01
1000 1872 3.342377 GCTTCTCTAGCCTTCCAAGTT 57.658 47.619 0.00 0.00 44.48 2.66
1031 1939 1.433534 CAAACGTCTCTTGCTCTCCC 58.566 55.000 0.00 0.00 0.00 4.30
1038 1966 0.947244 AGCAAGGCAAACGTCTCTTG 59.053 50.000 12.63 12.63 39.46 3.02
1039 1967 1.230324 GAGCAAGGCAAACGTCTCTT 58.770 50.000 0.00 0.00 0.00 2.85
1041 1969 0.884704 TGGAGCAAGGCAAACGTCTC 60.885 55.000 0.00 0.00 0.00 3.36
1042 1970 0.465460 TTGGAGCAAGGCAAACGTCT 60.465 50.000 0.00 0.00 0.00 4.18
1043 1971 0.040067 CTTGGAGCAAGGCAAACGTC 60.040 55.000 0.00 0.00 37.77 4.34
1044 1972 2.032981 CTTGGAGCAAGGCAAACGT 58.967 52.632 0.00 0.00 37.77 3.99
1045 1973 4.950744 CTTGGAGCAAGGCAAACG 57.049 55.556 0.00 0.00 37.77 3.60
1052 1980 2.699846 AGCTATCTCTCCTTGGAGCAAG 59.300 50.000 11.61 5.56 40.75 4.01
1053 1981 2.756907 AGCTATCTCTCCTTGGAGCAA 58.243 47.619 11.61 2.99 33.70 3.91
1054 1982 2.433604 CAAGCTATCTCTCCTTGGAGCA 59.566 50.000 11.61 1.68 33.96 4.26
1055 1983 2.433970 ACAAGCTATCTCTCCTTGGAGC 59.566 50.000 11.61 0.38 40.08 4.70
1056 1984 3.960102 AGACAAGCTATCTCTCCTTGGAG 59.040 47.826 10.28 10.28 40.08 3.86
1057 1985 3.987745 AGACAAGCTATCTCTCCTTGGA 58.012 45.455 0.00 0.00 40.08 3.53
1058 1986 4.405358 AGAAGACAAGCTATCTCTCCTTGG 59.595 45.833 1.06 0.00 40.08 3.61
1059 1987 5.105392 ACAGAAGACAAGCTATCTCTCCTTG 60.105 44.000 1.06 0.00 41.20 3.61
1060 1988 5.022787 ACAGAAGACAAGCTATCTCTCCTT 58.977 41.667 1.06 0.00 0.00 3.36
1061 1989 4.402155 CACAGAAGACAAGCTATCTCTCCT 59.598 45.833 1.06 0.00 0.00 3.69
1062 1990 4.400884 TCACAGAAGACAAGCTATCTCTCC 59.599 45.833 1.06 0.00 0.00 3.71
1093 2042 2.965831 TGGTCTCCCTTAATCATCTCGG 59.034 50.000 0.00 0.00 0.00 4.63
1103 2052 0.978146 GCTGCCTCTGGTCTCCCTTA 60.978 60.000 0.00 0.00 0.00 2.69
1124 2076 2.745884 TGTTCTTCATGGCCGCCG 60.746 61.111 4.58 0.00 0.00 6.46
1139 2091 7.389053 CAGTTCTAAACCTGATCTTTTAGCTGT 59.611 37.037 0.00 0.00 35.91 4.40
1141 2093 7.454225 ACAGTTCTAAACCTGATCTTTTAGCT 58.546 34.615 13.18 0.00 35.91 3.32
1250 2223 7.314393 CAAGTCTTTAGTCTTACCCACTAGTC 58.686 42.308 0.00 0.00 0.00 2.59
1255 2228 5.224821 ACCAAGTCTTTAGTCTTACCCAC 57.775 43.478 0.00 0.00 0.00 4.61
1259 2246 8.434733 AAACTCAACCAAGTCTTTAGTCTTAC 57.565 34.615 0.00 0.00 0.00 2.34
1325 2312 6.017192 ACTCAGACAAGTCCTAACTTCCATA 58.983 40.000 0.00 0.00 43.99 2.74
1609 2776 2.633481 TCTGAGGCCTGATGATCATCTG 59.367 50.000 30.65 28.82 38.60 2.90
1718 2919 5.048294 CCCTGCCTTATTACGAAAAGTTGTT 60.048 40.000 0.00 0.00 0.00 2.83
1782 3000 3.275999 GCCGCCCTTCTGAAGTAAATAA 58.724 45.455 15.72 0.00 0.00 1.40
1783 3001 2.237643 TGCCGCCCTTCTGAAGTAAATA 59.762 45.455 15.72 0.00 0.00 1.40
1784 3002 1.004277 TGCCGCCCTTCTGAAGTAAAT 59.996 47.619 15.72 0.00 0.00 1.40
1785 3003 0.398696 TGCCGCCCTTCTGAAGTAAA 59.601 50.000 15.72 0.00 0.00 2.01
1786 3004 0.036388 CTGCCGCCCTTCTGAAGTAA 60.036 55.000 15.72 0.00 0.00 2.24
1787 3005 1.192146 ACTGCCGCCCTTCTGAAGTA 61.192 55.000 15.72 0.00 0.00 2.24
1788 3006 1.192146 TACTGCCGCCCTTCTGAAGT 61.192 55.000 15.72 0.00 0.00 3.01
1789 3007 0.036388 TTACTGCCGCCCTTCTGAAG 60.036 55.000 10.46 10.46 0.00 3.02
1790 3008 0.398696 TTTACTGCCGCCCTTCTGAA 59.601 50.000 0.00 0.00 0.00 3.02
1791 3009 0.398696 TTTTACTGCCGCCCTTCTGA 59.601 50.000 0.00 0.00 0.00 3.27
1792 3010 1.068541 GTTTTTACTGCCGCCCTTCTG 60.069 52.381 0.00 0.00 0.00 3.02
1793 3011 1.202891 AGTTTTTACTGCCGCCCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
1794 3012 1.244816 AGTTTTTACTGCCGCCCTTC 58.755 50.000 0.00 0.00 0.00 3.46
1795 3013 2.224695 ACTAGTTTTTACTGCCGCCCTT 60.225 45.455 0.00 0.00 0.00 3.95
1796 3014 1.350019 ACTAGTTTTTACTGCCGCCCT 59.650 47.619 0.00 0.00 0.00 5.19
1797 3015 1.817357 ACTAGTTTTTACTGCCGCCC 58.183 50.000 0.00 0.00 0.00 6.13
1798 3016 6.314648 ACTTATTACTAGTTTTTACTGCCGCC 59.685 38.462 0.00 0.00 0.00 6.13
1926 3151 1.210478 GGCTACTTGGCTGGAAGATGA 59.790 52.381 0.00 0.00 38.32 2.92
1927 3152 1.065199 TGGCTACTTGGCTGGAAGATG 60.065 52.381 0.00 0.00 42.34 2.90
1928 3153 1.289160 TGGCTACTTGGCTGGAAGAT 58.711 50.000 0.00 0.00 42.34 2.40
1930 3155 1.168714 GTTGGCTACTTGGCTGGAAG 58.831 55.000 0.00 0.00 42.34 3.46
1931 3156 0.771127 AGTTGGCTACTTGGCTGGAA 59.229 50.000 0.00 0.00 42.34 3.53
1932 3157 1.555075 CTAGTTGGCTACTTGGCTGGA 59.445 52.381 6.96 0.00 42.34 3.86
2029 3790 4.256920 GCAATCTTGTCTTCTTGAGCCTA 58.743 43.478 0.00 0.00 0.00 3.93
2082 3843 4.079970 TCTTCAGCCTCTCGTTCTCTTTA 58.920 43.478 0.00 0.00 0.00 1.85
2288 4073 1.074405 TGCTGCCCTTGATCTGTTCTT 59.926 47.619 0.00 0.00 0.00 2.52
2293 4078 2.408271 TTAGTGCTGCCCTTGATCTG 57.592 50.000 0.00 0.00 0.00 2.90
2367 4152 1.522668 TTCCATCAGTTCTTGCACCG 58.477 50.000 0.00 0.00 0.00 4.94
2387 4172 0.878523 CGGTTGCACCTTCGTCTCAA 60.879 55.000 0.00 0.00 35.66 3.02
2403 4188 1.301401 CAATGTCACCACGTCCGGT 60.301 57.895 0.00 0.00 41.07 5.28
2409 4194 1.003355 AGGGCTCAATGTCACCACG 60.003 57.895 0.00 0.00 0.00 4.94
2466 4257 2.943345 GCTCGCCGCCGATATTGTG 61.943 63.158 0.00 0.00 43.47 3.33
2467 4258 2.661866 GCTCGCCGCCGATATTGT 60.662 61.111 0.00 0.00 43.47 2.71
2468 4259 2.162921 CTTGCTCGCCGCCGATATTG 62.163 60.000 0.00 0.00 43.47 1.90
2469 4260 1.956170 CTTGCTCGCCGCCGATATT 60.956 57.895 0.00 0.00 43.47 1.28
2470 4261 2.356313 CTTGCTCGCCGCCGATAT 60.356 61.111 0.00 0.00 43.47 1.63
2471 4262 4.585526 CCTTGCTCGCCGCCGATA 62.586 66.667 0.00 0.00 43.47 2.92
2498 4289 2.363018 CTCCAGTGCTCCTCGGGA 60.363 66.667 0.00 0.00 0.00 5.14
2511 4302 3.317436 ATCGGCCTCCACTCCTCCA 62.317 63.158 0.00 0.00 0.00 3.86
2514 4305 1.760086 CTCATCGGCCTCCACTCCT 60.760 63.158 0.00 0.00 0.00 3.69
2517 4308 1.760086 CTCCTCATCGGCCTCCACT 60.760 63.158 0.00 0.00 0.00 4.00
2529 4323 4.980592 TGCTGGGCCACCTCCTCA 62.981 66.667 0.00 0.00 37.76 3.86
2621 4426 8.495260 CCATCTAAGTTCTTATTAGGTTCCCTT 58.505 37.037 0.00 0.00 34.61 3.95
2622 4427 7.628101 ACCATCTAAGTTCTTATTAGGTTCCCT 59.372 37.037 0.00 0.00 37.71 4.20
2623 4428 7.803131 ACCATCTAAGTTCTTATTAGGTTCCC 58.197 38.462 0.00 0.00 32.24 3.97
2643 4738 4.437682 TCCATCCCACTCATTTACCATC 57.562 45.455 0.00 0.00 0.00 3.51
2658 4753 7.431249 TCTTATACACATACGAGTTTCCATCC 58.569 38.462 0.00 0.00 0.00 3.51
2703 4879 2.487934 CACCCATCGTTCATCTGATCC 58.512 52.381 0.00 0.00 0.00 3.36
2775 4951 1.982395 AGTGCAGCGGTAGTAGGCA 60.982 57.895 0.00 0.00 0.00 4.75
2832 5008 7.692460 TGTATATTGATCATGCAGGGAATTC 57.308 36.000 0.00 0.00 0.00 2.17
2833 5009 8.063200 CATGTATATTGATCATGCAGGGAATT 57.937 34.615 0.00 0.00 33.81 2.17
2834 5010 7.640597 CATGTATATTGATCATGCAGGGAAT 57.359 36.000 0.00 0.00 33.81 3.01
2857 5033 6.770378 CGATTATTTCGTGGCATTTCGGCA 62.770 45.833 0.00 0.00 43.05 5.69
2858 5034 2.553079 TTATTTCGTGGCATTTCGGC 57.447 45.000 0.00 0.00 41.67 5.54
2859 5035 3.288242 CGATTATTTCGTGGCATTTCGG 58.712 45.455 0.00 0.00 43.01 4.30
2880 5056 0.312416 TTGTTACCGCCATGTGTTGC 59.688 50.000 0.00 0.00 0.00 4.17
2891 5067 7.325097 GTGGAACATAAAGACATTTTGTTACCG 59.675 37.037 6.53 0.00 44.52 4.02
2909 5085 9.880140 CTTGGTCAAGTTTGGTTTGTGGAACAT 62.880 40.741 2.74 0.00 39.15 2.71
2916 5108 4.526650 AGTTCTTGGTCAAGTTTGGTTTGT 59.473 37.500 10.10 0.00 39.38 2.83
2941 5304 4.345288 CCGACATCAAAGCAATACATGTG 58.655 43.478 9.11 0.00 0.00 3.21
2948 5311 2.795329 ACTTCCCGACATCAAAGCAAT 58.205 42.857 0.00 0.00 0.00 3.56
2962 5455 3.085119 TAGCCGGCGCTAACTTCCC 62.085 63.158 23.20 0.00 46.08 3.97
3007 5606 9.357652 GCTTCAATAGTTGAGCATTGAAAATAA 57.642 29.630 10.07 0.00 45.59 1.40
3008 5607 8.742777 AGCTTCAATAGTTGAGCATTGAAAATA 58.257 29.630 10.07 0.00 45.59 1.40
3010 5609 6.985117 AGCTTCAATAGTTGAGCATTGAAAA 58.015 32.000 10.07 0.00 45.59 2.29
3021 5620 5.633601 TGTAAGTGTCGAGCTTCAATAGTTG 59.366 40.000 5.56 0.00 0.00 3.16
3026 5625 4.521130 TCTGTAAGTGTCGAGCTTCAAT 57.479 40.909 5.56 0.00 33.76 2.57
3058 5657 6.041069 CACAAAAGGGTTATCTTGGGTTGTAA 59.959 38.462 0.00 0.00 29.43 2.41
3067 5666 7.256296 CCCTGAATTTCACAAAAGGGTTATCTT 60.256 37.037 10.96 0.00 0.00 2.40
3121 5723 7.361127 CCAATACGACGTACATTAGATCTCTT 58.639 38.462 10.41 0.00 0.00 2.85
3122 5724 6.568081 GCCAATACGACGTACATTAGATCTCT 60.568 42.308 10.41 0.00 0.00 3.10
3133 5735 0.457035 TCCCAGCCAATACGACGTAC 59.543 55.000 10.41 0.00 0.00 3.67
3136 5738 0.174845 TTCTCCCAGCCAATACGACG 59.825 55.000 0.00 0.00 0.00 5.12
3148 5750 4.023291 GGGCAAACATAAGAATTCTCCCA 58.977 43.478 16.11 3.89 0.00 4.37
3150 5752 5.659440 TTGGGCAAACATAAGAATTCTCC 57.341 39.130 8.78 2.71 0.00 3.71
3154 5764 7.387673 GCTAACTTTTGGGCAAACATAAGAATT 59.612 33.333 10.68 0.00 34.72 2.17
3175 5785 7.643579 AGAAAAGAGAAACACATCTTGCTAAC 58.356 34.615 0.00 0.00 35.95 2.34
3210 5820 6.708054 ACGAGAAAAGAGAAACACATCTTGAT 59.292 34.615 0.00 0.00 35.95 2.57
3216 5826 6.348540 GCCAATACGAGAAAAGAGAAACACAT 60.349 38.462 0.00 0.00 0.00 3.21
3217 5827 5.049680 GCCAATACGAGAAAAGAGAAACACA 60.050 40.000 0.00 0.00 0.00 3.72
3219 5829 5.179368 CAGCCAATACGAGAAAAGAGAAACA 59.821 40.000 0.00 0.00 0.00 2.83
3220 5830 5.390991 CCAGCCAATACGAGAAAAGAGAAAC 60.391 44.000 0.00 0.00 0.00 2.78
3221 5831 4.695455 CCAGCCAATACGAGAAAAGAGAAA 59.305 41.667 0.00 0.00 0.00 2.52
3222 5832 4.253685 CCAGCCAATACGAGAAAAGAGAA 58.746 43.478 0.00 0.00 0.00 2.87
3223 5833 3.369471 CCCAGCCAATACGAGAAAAGAGA 60.369 47.826 0.00 0.00 0.00 3.10
3224 5834 2.939103 CCCAGCCAATACGAGAAAAGAG 59.061 50.000 0.00 0.00 0.00 2.85
3225 5835 2.569853 TCCCAGCCAATACGAGAAAAGA 59.430 45.455 0.00 0.00 0.00 2.52
3226 5836 2.939103 CTCCCAGCCAATACGAGAAAAG 59.061 50.000 0.00 0.00 0.00 2.27
3228 5838 2.184533 TCTCCCAGCCAATACGAGAAA 58.815 47.619 0.00 0.00 0.00 2.52
3229 5839 1.860641 TCTCCCAGCCAATACGAGAA 58.139 50.000 0.00 0.00 0.00 2.87
3230 5840 1.860641 TTCTCCCAGCCAATACGAGA 58.139 50.000 0.00 0.00 0.00 4.04
3231 5841 2.918712 ATTCTCCCAGCCAATACGAG 57.081 50.000 0.00 0.00 0.00 4.18
3232 5842 2.771943 AGAATTCTCCCAGCCAATACGA 59.228 45.455 0.88 0.00 0.00 3.43
3233 5843 3.199880 AGAATTCTCCCAGCCAATACG 57.800 47.619 0.88 0.00 0.00 3.06
3234 5844 6.064717 ACATAAGAATTCTCCCAGCCAATAC 58.935 40.000 8.78 0.00 0.00 1.89
3235 5845 6.266131 ACATAAGAATTCTCCCAGCCAATA 57.734 37.500 8.78 0.00 0.00 1.90
3236 5846 5.134725 ACATAAGAATTCTCCCAGCCAAT 57.865 39.130 8.78 0.00 0.00 3.16
3237 5847 4.591321 ACATAAGAATTCTCCCAGCCAA 57.409 40.909 8.78 0.00 0.00 4.52
3238 5848 4.591321 AACATAAGAATTCTCCCAGCCA 57.409 40.909 8.78 0.00 0.00 4.75
3239 5849 4.440663 GCAAACATAAGAATTCTCCCAGCC 60.441 45.833 8.78 0.00 0.00 4.85
3240 5850 4.440663 GGCAAACATAAGAATTCTCCCAGC 60.441 45.833 8.78 6.97 0.00 4.85
3241 5851 4.098501 GGGCAAACATAAGAATTCTCCCAG 59.901 45.833 16.11 7.40 0.00 4.45
3242 5852 4.023291 GGGCAAACATAAGAATTCTCCCA 58.977 43.478 16.11 3.89 0.00 4.37
3243 5853 4.023291 TGGGCAAACATAAGAATTCTCCC 58.977 43.478 8.78 12.47 0.00 4.30
3244 5854 5.659440 TTGGGCAAACATAAGAATTCTCC 57.341 39.130 8.78 2.71 0.00 3.71
3245 5855 6.691508 ACTTTGGGCAAACATAAGAATTCTC 58.308 36.000 8.78 0.00 0.00 2.87
3246 5856 6.670695 ACTTTGGGCAAACATAAGAATTCT 57.329 33.333 0.88 0.88 0.00 2.40
3247 5857 9.087424 GATAACTTTGGGCAAACATAAGAATTC 57.913 33.333 0.00 0.00 0.00 2.17
3248 5858 8.592809 TGATAACTTTGGGCAAACATAAGAATT 58.407 29.630 0.00 0.00 0.00 2.17
3249 5859 8.133024 TGATAACTTTGGGCAAACATAAGAAT 57.867 30.769 0.00 0.00 0.00 2.40
3250 5860 7.531857 TGATAACTTTGGGCAAACATAAGAA 57.468 32.000 0.00 0.00 0.00 2.52
3251 5861 7.232534 ACTTGATAACTTTGGGCAAACATAAGA 59.767 33.333 0.00 0.00 0.00 2.10
3252 5862 7.378181 ACTTGATAACTTTGGGCAAACATAAG 58.622 34.615 0.00 0.00 0.00 1.73
3253 5863 7.296628 ACTTGATAACTTTGGGCAAACATAA 57.703 32.000 0.00 0.00 0.00 1.90
3254 5864 6.909550 ACTTGATAACTTTGGGCAAACATA 57.090 33.333 0.00 0.00 0.00 2.29
3255 5865 5.806654 ACTTGATAACTTTGGGCAAACAT 57.193 34.783 0.00 0.00 0.00 2.71
3256 5866 5.127845 TGAACTTGATAACTTTGGGCAAACA 59.872 36.000 0.00 0.00 0.00 2.83
3257 5867 5.596845 TGAACTTGATAACTTTGGGCAAAC 58.403 37.500 0.00 0.00 0.00 2.93
3258 5868 5.860941 TGAACTTGATAACTTTGGGCAAA 57.139 34.783 0.00 0.00 0.00 3.68
3259 5869 7.716799 ATATGAACTTGATAACTTTGGGCAA 57.283 32.000 0.00 0.00 0.00 4.52
3260 5870 7.716799 AATATGAACTTGATAACTTTGGGCA 57.283 32.000 0.00 0.00 0.00 5.36
3261 5871 9.736023 CTAAATATGAACTTGATAACTTTGGGC 57.264 33.333 0.00 0.00 0.00 5.36
3288 5898 6.940867 GGGAACTTGATACTACTTTTGAACCT 59.059 38.462 0.00 0.00 0.00 3.50
3290 5900 6.940867 AGGGGAACTTGATACTACTTTTGAAC 59.059 38.462 0.00 0.00 0.00 3.18
3292 5902 6.697641 AGGGGAACTTGATACTACTTTTGA 57.302 37.500 0.00 0.00 0.00 2.69
3293 5903 8.857694 TTTAGGGGAACTTGATACTACTTTTG 57.142 34.615 0.00 0.00 0.00 2.44
3359 6032 0.251121 ATTTGGGACCATGCACGTGA 60.251 50.000 22.23 4.80 0.00 4.35
3362 6035 1.809207 GGATTTGGGACCATGCACG 59.191 57.895 0.00 0.00 0.00 5.34
3406 6081 2.047274 GCTGGTGCTCCAACGCTA 60.047 61.111 9.14 0.00 43.81 4.26
3430 6105 0.470833 TGCTAGCTCCCTCCATCCTC 60.471 60.000 17.23 0.00 0.00 3.71
3431 6106 0.471591 CTGCTAGCTCCCTCCATCCT 60.472 60.000 17.23 0.00 0.00 3.24
3435 6110 2.765807 GCCTGCTAGCTCCCTCCA 60.766 66.667 17.23 0.00 0.00 3.86
3449 6124 1.880027 CGTGCTTTTCTGTTTAGGCCT 59.120 47.619 11.78 11.78 0.00 5.19
3481 6156 1.527380 GGCTCCGATCTCCGAGTCT 60.527 63.158 0.00 0.00 41.76 3.24
3538 6224 4.103103 GAGAGGCGCCCGTTTTGC 62.103 66.667 26.15 3.86 0.00 3.68
3539 6225 3.431725 GGAGAGGCGCCCGTTTTG 61.432 66.667 26.15 0.00 0.00 2.44
3540 6226 4.717313 GGGAGAGGCGCCCGTTTT 62.717 66.667 26.15 2.91 33.05 2.43
3583 6274 1.395045 CCTATCACCGCCAGAGAGCA 61.395 60.000 0.00 0.00 0.00 4.26
3651 6357 4.054455 CAACCCAACGACGACGCG 62.054 66.667 3.53 3.53 43.96 6.01
3655 6361 1.005867 GCCTACAACCCAACGACGA 60.006 57.895 0.00 0.00 0.00 4.20
3668 6535 1.918609 GTTTCGACGTGATCAGCCTAC 59.081 52.381 0.00 0.00 0.00 3.18
3679 6546 1.292992 GGACCAGTTTGTTTCGACGT 58.707 50.000 0.00 0.00 0.00 4.34
3725 6596 0.621571 AGCCCCAGCATTCTAGACCA 60.622 55.000 0.00 0.00 43.56 4.02
3729 6600 0.548031 TCCAAGCCCCAGCATTCTAG 59.452 55.000 0.00 0.00 43.56 2.43
3739 6610 0.322008 CACAGTCTTCTCCAAGCCCC 60.322 60.000 0.00 0.00 0.00 5.80
3741 6612 0.036022 AGCACAGTCTTCTCCAAGCC 59.964 55.000 0.00 0.00 0.00 4.35
3744 6615 0.397941 CCCAGCACAGTCTTCTCCAA 59.602 55.000 0.00 0.00 0.00 3.53
3756 6627 2.736531 CAACCCAAAGCCCAGCAC 59.263 61.111 0.00 0.00 0.00 4.40
3759 6630 3.313524 GCCCAACCCAAAGCCCAG 61.314 66.667 0.00 0.00 0.00 4.45
3799 6687 1.251251 GACTTGCTTGAAGTGGGCAT 58.749 50.000 0.00 0.00 45.48 4.40
3853 6793 4.750098 AGGTACACTGAACTCGTTTGATTG 59.250 41.667 0.00 0.00 0.00 2.67
3855 6795 4.602340 AGGTACACTGAACTCGTTTGAT 57.398 40.909 0.00 0.00 0.00 2.57
3856 6796 5.518848 TTAGGTACACTGAACTCGTTTGA 57.481 39.130 0.00 0.00 0.00 2.69
3857 6797 5.694910 ACATTAGGTACACTGAACTCGTTTG 59.305 40.000 0.00 0.00 0.00 2.93
3859 6799 5.464030 ACATTAGGTACACTGAACTCGTT 57.536 39.130 0.00 0.00 0.00 3.85
3860 6800 4.379186 CGACATTAGGTACACTGAACTCGT 60.379 45.833 0.00 0.00 0.00 4.18
3862 6802 5.306532 TCGACATTAGGTACACTGAACTC 57.693 43.478 0.00 0.00 0.00 3.01
3864 6804 6.774354 TTTTCGACATTAGGTACACTGAAC 57.226 37.500 0.00 0.00 0.00 3.18
3896 7286 4.634012 ATTTTTGGGGGAAGTTTTAGCC 57.366 40.909 0.00 0.00 0.00 3.93
3904 7294 5.067153 GGTTGTTTTCAATTTTTGGGGGAAG 59.933 40.000 0.00 0.00 42.08 3.46
3910 7300 8.485976 TGAACTAGGTTGTTTTCAATTTTTGG 57.514 30.769 0.00 0.00 42.08 3.28
3978 7476 8.902540 TGTTCTTTATTTCTCAAGCTCAACTA 57.097 30.769 0.00 0.00 0.00 2.24
3983 7483 8.725148 TGAATCTGTTCTTTATTTCTCAAGCTC 58.275 33.333 0.00 0.00 35.33 4.09
3999 7529 5.886960 AGCTACCACATTTGAATCTGTTC 57.113 39.130 0.00 0.00 34.85 3.18
4033 7567 4.855715 TCAGATAGGGACGATGTGAATC 57.144 45.455 0.00 0.00 40.34 2.52
4124 7666 8.883731 AGTACACACAATTTACTTCTATCATGC 58.116 33.333 0.00 0.00 0.00 4.06
4201 9361 8.976471 CATTTTTACATGAACTTGTTGCACATA 58.024 29.630 0.00 0.00 0.00 2.29
4202 9362 7.710044 TCATTTTTACATGAACTTGTTGCACAT 59.290 29.630 0.00 0.00 29.81 3.21
4205 9365 8.549548 CAATCATTTTTACATGAACTTGTTGCA 58.450 29.630 0.00 0.00 36.74 4.08
4206 9366 8.550376 ACAATCATTTTTACATGAACTTGTTGC 58.450 29.630 0.00 0.00 34.72 4.17
4222 9382 4.150980 CGCAGAAATGTGCACAATCATTTT 59.849 37.500 25.72 18.82 44.21 1.82
4229 9390 0.040157 GAGCGCAGAAATGTGCACAA 60.040 50.000 25.72 7.59 46.68 3.33
4263 9458 7.094205 CCACTGCTATTACCAAAGTGAAGATTT 60.094 37.037 2.80 0.00 40.54 2.17
4271 9466 3.433306 TGCCACTGCTATTACCAAAGT 57.567 42.857 0.00 0.00 38.71 2.66
4292 9487 6.435277 ACATGATTAGTTCAAGTGCAAATCCT 59.565 34.615 0.00 0.00 35.07 3.24
4346 10621 9.994432 AGAAAATATGAGAGCGAGTTTTAAATG 57.006 29.630 0.00 0.00 0.00 2.32
4433 10929 2.593978 CATCTCTGCACCTGGGGG 59.406 66.667 0.00 0.00 38.88 5.40
4505 11001 4.070552 GTTGCGGAGGCGGAGAGT 62.071 66.667 0.00 0.00 44.10 3.24
4547 11043 4.471908 ATGAGCATGGACGCGGCA 62.472 61.111 17.00 0.00 36.85 5.69
4646 11142 2.351276 GAGGTGTCCATGGCCGTT 59.649 61.111 6.96 0.00 0.00 4.44
4796 11292 4.234530 AGAGAACTTGTTGCAATTGCTC 57.765 40.909 29.37 21.65 42.66 4.26
4803 11299 1.949525 GCTGGAAGAGAACTTGTTGCA 59.050 47.619 0.00 0.00 36.39 4.08
4810 11306 1.001406 CGGTGAAGCTGGAAGAGAACT 59.999 52.381 0.00 0.00 34.07 3.01
4817 11313 2.172483 GAGAGCCGGTGAAGCTGGAA 62.172 60.000 1.90 0.00 46.81 3.53
4967 11466 3.454573 TTGTAGGACGCGCCGGAT 61.455 61.111 5.05 0.00 43.43 4.18
5089 11588 1.131638 ACCACTTCTCAACTCAGCCA 58.868 50.000 0.00 0.00 0.00 4.75
5132 11640 1.533965 GCGATCGTATCAGTGAGCACA 60.534 52.381 17.81 0.00 0.00 4.57
5210 11718 2.202703 GCCGACTTGCCGACGTAT 60.203 61.111 0.00 0.00 0.00 3.06
5432 12220 2.093288 TCTGCTCCATGATCTTCACACC 60.093 50.000 0.00 0.00 0.00 4.16
5442 12230 3.548745 ACGAATTGATCTGCTCCATGA 57.451 42.857 0.00 0.00 0.00 3.07
5452 12240 8.982685 TCATAAGCTTCATCTAACGAATTGATC 58.017 33.333 0.00 0.00 0.00 2.92
5460 12252 8.581057 ACATAAGTCATAAGCTTCATCTAACG 57.419 34.615 0.00 0.00 0.00 3.18
5552 12346 4.583489 AGGCTGTGAATGATGAATCAATCC 59.417 41.667 6.02 0.00 40.69 3.01
5617 12412 2.948315 GCACCAATTTTTCCAGGCAAAA 59.052 40.909 0.00 0.00 0.00 2.44
5632 12428 5.662674 TCAATTGATGATCATTGCACCAA 57.337 34.783 10.14 9.26 31.50 3.67
5665 12469 1.202428 CGGCAGGCTTAGTAACTCTCC 60.202 57.143 0.00 0.00 0.00 3.71
5672 12476 1.140252 GGGAAATCGGCAGGCTTAGTA 59.860 52.381 0.00 0.00 0.00 1.82
5677 12481 4.129148 GGGGGAAATCGGCAGGCT 62.129 66.667 0.00 0.00 0.00 4.58
5681 12485 3.006728 AGACGGGGGAAATCGGCA 61.007 61.111 0.00 0.00 36.77 5.69
5733 12538 3.500680 GTGCTAATTCAACAGGAAACCGA 59.499 43.478 0.00 0.00 39.39 4.69
5735 12540 4.846779 TGTGCTAATTCAACAGGAAACC 57.153 40.909 0.00 0.00 39.39 3.27
5773 12578 6.255887 CCTAAGATTACTTGTTTCCGCTGTAG 59.744 42.308 0.00 0.00 37.53 2.74
5799 12604 2.417933 CTGGAAGCTGAATCAAACGGAG 59.582 50.000 0.00 0.00 0.00 4.63
5813 12618 0.390472 CAGAACTCGGGTCTGGAAGC 60.390 60.000 10.17 0.00 0.00 3.86
5835 12640 8.991026 CCATTTGATTAGCTTTTGACATTTCAA 58.009 29.630 0.00 0.00 40.14 2.69
5862 12667 4.696402 TGAAGTGGTTGTCGTGTAAGTTTT 59.304 37.500 0.00 0.00 0.00 2.43
5870 12675 1.229428 ATGCTGAAGTGGTTGTCGTG 58.771 50.000 0.00 0.00 0.00 4.35
5884 12704 4.201950 GGCTGTGGAAAATACACTATGCTG 60.202 45.833 0.00 0.00 39.52 4.41
5941 13231 6.772716 TGATAATAGTGGAAGAAGATTTGGGC 59.227 38.462 0.00 0.00 0.00 5.36
5975 13498 6.870971 ACATATAGGAAAACGTGTTGTGTT 57.129 33.333 0.00 0.00 0.00 3.32
5984 13508 7.381678 GCCTCTAGTGTTACATATAGGAAAACG 59.618 40.741 9.22 0.00 0.00 3.60
5993 13518 8.870116 TGTATGATTGCCTCTAGTGTTACATAT 58.130 33.333 0.00 0.00 0.00 1.78
5996 13521 6.538945 TGTATGATTGCCTCTAGTGTTACA 57.461 37.500 0.00 0.00 0.00 2.41
6029 13555 5.798125 TGTTTTTCCTATCCAACATGCAA 57.202 34.783 0.00 0.00 0.00 4.08
6032 13558 9.793252 CTAATCTTGTTTTTCCTATCCAACATG 57.207 33.333 0.00 0.00 0.00 3.21
6067 13593 7.255801 GGTGAGATTGTTTCAATCCCTTGTTTA 60.256 37.037 15.81 0.00 33.87 2.01
6068 13594 6.462909 GGTGAGATTGTTTCAATCCCTTGTTT 60.463 38.462 15.81 0.05 33.87 2.83
6110 13636 2.439507 ACCTTCTCTCCTTCAAGTTGCA 59.560 45.455 0.00 0.00 0.00 4.08
6135 13661 4.218417 CCCAAGGTTGTGAAGATTAGGTTG 59.782 45.833 0.00 0.00 0.00 3.77
6138 13664 4.301072 TCCCAAGGTTGTGAAGATTAGG 57.699 45.455 0.00 0.00 0.00 2.69
6191 13720 3.796111 AGGGAGTGAGGAAGATTGAAGA 58.204 45.455 0.00 0.00 0.00 2.87
6206 13735 1.132689 ACCAAGAGAGTGGAAGGGAGT 60.133 52.381 0.00 0.00 41.65 3.85
6214 13744 2.959465 AGGGAAAACCAAGAGAGTGG 57.041 50.000 0.00 0.00 43.89 4.00
6268 13799 1.896660 GCGGCCACCAAGAAGAACA 60.897 57.895 2.24 0.00 0.00 3.18
6284 13815 4.439426 GGATGTATAGCCTCACATCTAGCG 60.439 50.000 16.98 0.00 46.67 4.26
6293 13824 2.979678 GGAAAGGGGATGTATAGCCTCA 59.020 50.000 0.00 0.00 34.39 3.86
6316 13847 4.211794 GGTGATTTTTGACTTTGCACATGG 59.788 41.667 0.00 0.00 0.00 3.66
6330 13861 7.226059 AGGGTTATGATCTAGGGTGATTTTT 57.774 36.000 0.00 0.00 0.00 1.94
6390 13927 9.520515 AGAAGATGACTATTTGAAGCCTTTTAA 57.479 29.630 0.00 0.00 0.00 1.52
6444 13982 1.192146 TGGACTGGTGGTAGAGGTGC 61.192 60.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.