Multiple sequence alignment - TraesCS7A01G096100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G096100 chr7A 100.000 2531 0 0 1 2531 59016660 59019190 0.000000e+00 4674.0
1 TraesCS7A01G096100 chr7A 90.617 405 33 3 989 1389 591648867 591649270 1.470000e-147 532.0
2 TraesCS7A01G096100 chr7A 82.171 258 27 12 1632 1882 591649561 591649806 1.310000e-48 204.0
3 TraesCS7A01G096100 chr7A 100.000 84 0 0 2448 2531 59118816 59118899 3.730000e-34 156.0
4 TraesCS7A01G096100 chr7A 90.722 97 9 0 1440 1536 591649343 591649439 2.260000e-26 130.0
5 TraesCS7A01G096100 chr7A 82.707 133 14 6 2176 2306 719509696 719509821 2.950000e-20 110.0
6 TraesCS7A01G096100 chr7A 100.000 53 0 0 2745 2797 59019404 59019456 6.380000e-17 99.0
7 TraesCS7A01G096100 chr7A 100.000 53 0 0 2745 2797 59119099 59119151 6.380000e-17 99.0
8 TraesCS7A01G096100 chr7A 100.000 53 0 0 2745 2797 59119293 59119345 6.380000e-17 99.0
9 TraesCS7A01G096100 chr7A 97.619 42 1 0 2747 2788 172918598 172918639 3.860000e-09 73.1
10 TraesCS7A01G096100 chr7D 88.020 1202 66 31 789 1958 55221536 55222691 0.000000e+00 1351.0
11 TraesCS7A01G096100 chr7D 87.196 1234 66 35 788 1958 54990686 54989482 0.000000e+00 1319.0
12 TraesCS7A01G096100 chr7D 90.819 403 32 3 991 1389 517114795 517115196 4.100000e-148 534.0
13 TraesCS7A01G096100 chr7D 95.939 197 8 0 292 488 55221337 55221533 1.250000e-83 320.0
14 TraesCS7A01G096100 chr7D 92.778 180 12 1 310 488 54992085 54991906 2.760000e-65 259.0
15 TraesCS7A01G096100 chr7D 80.165 363 45 18 2178 2516 55222712 55223071 2.150000e-61 246.0
16 TraesCS7A01G096100 chr7D 79.521 376 50 18 2178 2531 54989461 54989091 2.780000e-60 243.0
17 TraesCS7A01G096100 chr7D 80.734 327 40 14 6 325 54992737 54992427 1.680000e-57 233.0
18 TraesCS7A01G096100 chr7D 82.031 256 28 11 1632 1882 517115485 517115727 4.720000e-48 202.0
19 TraesCS7A01G096100 chr7D 77.686 242 41 10 2048 2279 34469671 34469433 4.860000e-28 135.0
20 TraesCS7A01G096100 chr7D 76.923 286 34 21 2049 2308 69270482 69270761 1.750000e-27 134.0
21 TraesCS7A01G096100 chr4A 89.807 932 64 14 1615 2531 671027013 671027928 0.000000e+00 1166.0
22 TraesCS7A01G096100 chr4A 88.322 745 45 20 880 1603 671018260 671018983 0.000000e+00 856.0
23 TraesCS7A01G096100 chr4A 94.413 179 7 1 310 488 671016314 671016489 3.550000e-69 272.0
24 TraesCS7A01G096100 chr4A 92.233 103 8 0 790 892 671016493 671016595 2.250000e-31 147.0
25 TraesCS7A01G096100 chr4A 94.444 54 2 1 2745 2797 671028130 671028183 6.420000e-12 82.4
26 TraesCS7A01G096100 chr7B 85.017 574 49 17 994 1536 549603140 549603707 1.460000e-152 549.0
27 TraesCS7A01G096100 chr7B 95.623 297 13 0 494 790 29237715 29238011 7.010000e-131 477.0
28 TraesCS7A01G096100 chr7B 83.784 222 22 8 1666 1882 549603836 549604048 6.110000e-47 198.0
29 TraesCS7A01G096100 chr3B 95.695 302 12 1 494 795 657541662 657541962 4.190000e-133 484.0
30 TraesCS7A01G096100 chr3B 95.066 304 15 0 492 795 651374085 651373782 1.950000e-131 479.0
31 TraesCS7A01G096100 chr6B 95.114 307 13 2 495 801 538067742 538068046 1.510000e-132 483.0
32 TraesCS7A01G096100 chr6B 94.754 305 15 1 486 790 479296270 479296573 9.070000e-130 473.0
33 TraesCS7A01G096100 chr6B 82.237 152 18 5 2162 2308 682663037 682663184 3.780000e-24 122.0
34 TraesCS7A01G096100 chr2B 95.623 297 13 0 494 790 480355600 480355304 7.010000e-131 477.0
35 TraesCS7A01G096100 chr2B 94.444 306 17 0 485 790 721274944 721275249 3.260000e-129 472.0
36 TraesCS7A01G096100 chr2B 81.143 175 21 11 2097 2263 160218674 160218844 2.260000e-26 130.0
37 TraesCS7A01G096100 chr2B 92.453 53 2 2 2747 2797 609140847 609140899 1.070000e-09 75.0
38 TraesCS7A01G096100 chrUn 95.608 296 13 0 495 790 78173366 78173661 2.520000e-130 475.0
39 TraesCS7A01G096100 chrUn 86.792 53 6 1 2746 2797 328262626 328262574 1.080000e-04 58.4
40 TraesCS7A01G096100 chr4B 94.754 305 15 1 487 790 621443882 621443578 9.070000e-130 473.0
41 TraesCS7A01G096100 chr2D 86.420 162 18 4 2131 2291 304223706 304223864 1.030000e-39 174.0
42 TraesCS7A01G096100 chr2D 86.792 53 6 1 2746 2797 2956181 2956129 1.080000e-04 58.4
43 TraesCS7A01G096100 chr2A 84.663 163 21 4 2131 2291 382256862 382257022 2.880000e-35 159.0
44 TraesCS7A01G096100 chr2A 75.882 170 26 13 2048 2205 769259773 769259607 3.860000e-09 73.1
45 TraesCS7A01G096100 chr6D 76.923 260 40 16 1960 2205 387720459 387720206 2.260000e-26 130.0
46 TraesCS7A01G096100 chr5A 81.513 119 16 4 2088 2202 436983710 436983826 2.970000e-15 93.5
47 TraesCS7A01G096100 chr4D 95.652 46 1 1 2747 2791 8879417 8879372 3.860000e-09 73.1
48 TraesCS7A01G096100 chr5D 93.478 46 2 1 2747 2791 105020887 105020842 1.800000e-07 67.6
49 TraesCS7A01G096100 chr3A 95.349 43 1 1 1960 2002 585568916 585568957 1.800000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G096100 chr7A 59016660 59019456 2796 False 2386.500000 4674 100.000000 1 2797 2 chr7A.!!$F3 2796
1 TraesCS7A01G096100 chr7A 591648867 591649806 939 False 288.666667 532 87.836667 989 1882 3 chr7A.!!$F5 893
2 TraesCS7A01G096100 chr7D 55221337 55223071 1734 False 639.000000 1351 88.041333 292 2516 3 chr7D.!!$F2 2224
3 TraesCS7A01G096100 chr7D 54989091 54992737 3646 True 513.500000 1319 85.057250 6 2531 4 chr7D.!!$R2 2525
4 TraesCS7A01G096100 chr7D 517114795 517115727 932 False 368.000000 534 86.425000 991 1882 2 chr7D.!!$F3 891
5 TraesCS7A01G096100 chr4A 671027013 671028183 1170 False 624.200000 1166 92.125500 1615 2797 2 chr4A.!!$F2 1182
6 TraesCS7A01G096100 chr4A 671016314 671018983 2669 False 425.000000 856 91.656000 310 1603 3 chr4A.!!$F1 1293
7 TraesCS7A01G096100 chr7B 549603140 549604048 908 False 373.500000 549 84.400500 994 1882 2 chr7B.!!$F2 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 1045 0.034767 CATGCACACCCCACATCTCT 60.035 55.0 0.0 0.0 0.00 3.10 F
728 1100 0.100503 AGAATTTAATGCACCGCGCC 59.899 50.0 0.0 0.0 41.33 6.53 F
739 1111 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.0 0.0 0.0 0.00 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1748 5019 2.040947 TCTGCTCTTCCTGAGACTGAGA 59.959 50.0 0.0 0.0 45.39 3.27 R
1750 5021 2.040947 TCTCTGCTCTTCCTGAGACTGA 59.959 50.0 0.0 0.0 45.39 3.41 R
1917 5201 2.161609 GGAACACAAGGCTTCAATACCG 59.838 50.0 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.648557 GCTTCTTTGTTTCAGAGGTTTTTATT 57.351 30.769 0.00 0.00 0.00 1.40
33 34 9.898152 TGTTTCAGAGGTTTTTATTGGAATTTT 57.102 25.926 0.00 0.00 0.00 1.82
68 69 8.607441 AAAATCCTTTGAAACCTTTTCTATGC 57.393 30.769 0.68 0.00 0.00 3.14
70 71 5.144100 TCCTTTGAAACCTTTTCTATGCCA 58.856 37.500 0.68 0.00 0.00 4.92
73 74 5.452078 TTGAAACCTTTTCTATGCCAGTG 57.548 39.130 0.68 0.00 0.00 3.66
74 75 3.826157 TGAAACCTTTTCTATGCCAGTGG 59.174 43.478 4.20 4.20 0.00 4.00
75 76 3.525800 AACCTTTTCTATGCCAGTGGT 57.474 42.857 11.74 0.00 0.00 4.16
76 77 3.525800 ACCTTTTCTATGCCAGTGGTT 57.474 42.857 11.74 1.24 0.00 3.67
77 78 3.844640 ACCTTTTCTATGCCAGTGGTTT 58.155 40.909 11.74 0.85 0.00 3.27
78 79 3.573967 ACCTTTTCTATGCCAGTGGTTTG 59.426 43.478 11.74 0.30 0.00 2.93
79 80 3.826157 CCTTTTCTATGCCAGTGGTTTGA 59.174 43.478 11.74 2.81 0.00 2.69
80 81 4.463891 CCTTTTCTATGCCAGTGGTTTGAT 59.536 41.667 11.74 0.93 0.00 2.57
81 82 5.047092 CCTTTTCTATGCCAGTGGTTTGATT 60.047 40.000 11.74 0.00 0.00 2.57
82 83 5.643379 TTTCTATGCCAGTGGTTTGATTC 57.357 39.130 11.74 0.00 0.00 2.52
83 84 4.299586 TCTATGCCAGTGGTTTGATTCA 57.700 40.909 11.74 0.00 0.00 2.57
125 139 6.013466 AGGAATTTTTGTGCCACTTTCCATAT 60.013 34.615 12.85 0.00 34.86 1.78
148 162 9.698309 ATATGATTTCTAGTATCCACTCAAACG 57.302 33.333 0.00 0.00 36.14 3.60
149 163 6.931838 TGATTTCTAGTATCCACTCAAACGT 58.068 36.000 0.00 0.00 36.14 3.99
215 229 9.158233 TCAAATAACTTAAATCCCGTAGAACTG 57.842 33.333 0.00 0.00 0.00 3.16
222 236 4.927978 AATCCCGTAGAACTGAGATGAG 57.072 45.455 0.00 0.00 0.00 2.90
223 237 2.656002 TCCCGTAGAACTGAGATGAGG 58.344 52.381 0.00 0.00 0.00 3.86
225 239 3.024547 CCCGTAGAACTGAGATGAGGAA 58.975 50.000 0.00 0.00 0.00 3.36
247 261 9.620259 AGGAAGACATTCTAATCCTATGTTTTC 57.380 33.333 0.00 0.00 40.16 2.29
248 262 9.620259 GGAAGACATTCTAATCCTATGTTTTCT 57.380 33.333 13.72 0.00 40.45 2.52
280 294 1.533731 TCCGTGTTTTTCGAATCCTGC 59.466 47.619 0.00 0.00 0.00 4.85
286 300 4.071423 TGTTTTTCGAATCCTGCAGATCA 58.929 39.130 17.39 0.00 32.47 2.92
287 301 4.518590 TGTTTTTCGAATCCTGCAGATCAA 59.481 37.500 17.39 5.35 32.47 2.57
376 747 5.535753 AGCATGCAACTTTTTAAAGGAGT 57.464 34.783 21.98 1.66 40.31 3.85
435 807 1.410004 AGTGTGAACGAGAGGGAACA 58.590 50.000 0.00 0.00 0.00 3.18
493 865 3.985008 TGATGCAGCCATGAATTAATGC 58.015 40.909 0.00 0.00 0.00 3.56
494 866 3.639561 TGATGCAGCCATGAATTAATGCT 59.360 39.130 0.00 0.00 34.80 3.79
495 867 4.828387 TGATGCAGCCATGAATTAATGCTA 59.172 37.500 0.00 0.00 34.80 3.49
497 869 4.209538 TGCAGCCATGAATTAATGCTACT 58.790 39.130 0.00 0.00 34.80 2.57
498 870 4.276678 TGCAGCCATGAATTAATGCTACTC 59.723 41.667 0.00 0.00 34.80 2.59
500 872 4.217118 CAGCCATGAATTAATGCTACTCCC 59.783 45.833 0.00 0.00 0.00 4.30
501 873 4.105377 AGCCATGAATTAATGCTACTCCCT 59.895 41.667 0.00 0.00 0.00 4.20
502 874 4.829492 GCCATGAATTAATGCTACTCCCTT 59.171 41.667 0.00 0.00 0.00 3.95
503 875 5.048434 GCCATGAATTAATGCTACTCCCTTC 60.048 44.000 0.00 0.00 0.00 3.46
504 876 5.180117 CCATGAATTAATGCTACTCCCTTCG 59.820 44.000 0.00 0.00 0.00 3.79
505 877 5.353394 TGAATTAATGCTACTCCCTTCGT 57.647 39.130 0.00 0.00 0.00 3.85
506 878 5.116180 TGAATTAATGCTACTCCCTTCGTG 58.884 41.667 0.00 0.00 0.00 4.35
507 879 4.755266 ATTAATGCTACTCCCTTCGTGT 57.245 40.909 0.00 0.00 0.00 4.49
508 880 5.864418 ATTAATGCTACTCCCTTCGTGTA 57.136 39.130 0.00 0.00 0.00 2.90
509 881 3.802948 AATGCTACTCCCTTCGTGTAG 57.197 47.619 0.00 0.00 40.19 2.74
510 882 1.471119 TGCTACTCCCTTCGTGTAGG 58.529 55.000 0.00 0.00 38.47 3.18
511 883 1.272313 TGCTACTCCCTTCGTGTAGGT 60.272 52.381 0.00 0.00 38.47 3.08
513 885 2.719739 CTACTCCCTTCGTGTAGGTGA 58.280 52.381 0.00 0.00 35.70 4.02
514 886 1.546961 ACTCCCTTCGTGTAGGTGAG 58.453 55.000 0.00 0.00 38.00 3.51
515 887 1.203025 ACTCCCTTCGTGTAGGTGAGT 60.203 52.381 13.56 13.56 39.21 3.41
516 888 2.040813 ACTCCCTTCGTGTAGGTGAGTA 59.959 50.000 15.74 0.00 40.74 2.59
517 889 3.087031 CTCCCTTCGTGTAGGTGAGTAA 58.913 50.000 0.00 0.00 32.44 2.24
518 890 3.087031 TCCCTTCGTGTAGGTGAGTAAG 58.913 50.000 0.00 0.00 33.17 2.34
519 891 2.824341 CCCTTCGTGTAGGTGAGTAAGT 59.176 50.000 0.00 0.00 33.17 2.24
520 892 3.119566 CCCTTCGTGTAGGTGAGTAAGTC 60.120 52.174 0.00 0.00 33.17 3.01
521 893 3.504906 CCTTCGTGTAGGTGAGTAAGTCA 59.495 47.826 0.00 0.00 0.00 3.41
522 894 4.158025 CCTTCGTGTAGGTGAGTAAGTCAT 59.842 45.833 0.00 0.00 37.56 3.06
523 895 5.336531 CCTTCGTGTAGGTGAGTAAGTCATT 60.337 44.000 0.00 0.00 37.56 2.57
524 896 5.717078 TCGTGTAGGTGAGTAAGTCATTT 57.283 39.130 0.00 0.00 37.56 2.32
525 897 6.092955 TCGTGTAGGTGAGTAAGTCATTTT 57.907 37.500 0.00 0.00 37.56 1.82
526 898 7.218228 TCGTGTAGGTGAGTAAGTCATTTTA 57.782 36.000 0.00 0.00 37.56 1.52
527 899 7.310664 TCGTGTAGGTGAGTAAGTCATTTTAG 58.689 38.462 0.00 0.00 37.56 1.85
528 900 7.175467 TCGTGTAGGTGAGTAAGTCATTTTAGA 59.825 37.037 0.00 0.00 37.56 2.10
529 901 7.974501 CGTGTAGGTGAGTAAGTCATTTTAGAT 59.025 37.037 0.00 0.00 37.56 1.98
530 902 9.654663 GTGTAGGTGAGTAAGTCATTTTAGATT 57.345 33.333 0.00 0.00 37.56 2.40
534 906 9.331282 AGGTGAGTAAGTCATTTTAGATTATGC 57.669 33.333 0.00 0.00 37.56 3.14
535 907 9.109393 GGTGAGTAAGTCATTTTAGATTATGCA 57.891 33.333 0.00 0.00 37.56 3.96
536 908 9.922305 GTGAGTAAGTCATTTTAGATTATGCAC 57.078 33.333 0.00 0.00 37.56 4.57
537 909 9.109393 TGAGTAAGTCATTTTAGATTATGCACC 57.891 33.333 0.00 0.00 0.00 5.01
538 910 8.142994 AGTAAGTCATTTTAGATTATGCACCG 57.857 34.615 0.00 0.00 0.00 4.94
539 911 7.769044 AGTAAGTCATTTTAGATTATGCACCGT 59.231 33.333 0.00 0.00 0.00 4.83
540 912 6.363577 AGTCATTTTAGATTATGCACCGTG 57.636 37.500 0.00 0.00 0.00 4.94
541 913 6.112734 AGTCATTTTAGATTATGCACCGTGA 58.887 36.000 1.65 0.00 0.00 4.35
542 914 6.037172 AGTCATTTTAGATTATGCACCGTGAC 59.963 38.462 1.65 0.00 33.27 3.67
543 915 5.295787 TCATTTTAGATTATGCACCGTGACC 59.704 40.000 1.65 0.00 0.00 4.02
544 916 3.897141 TTAGATTATGCACCGTGACCA 57.103 42.857 1.65 0.00 0.00 4.02
545 917 2.779755 AGATTATGCACCGTGACCAA 57.220 45.000 1.65 0.00 0.00 3.67
546 918 2.632377 AGATTATGCACCGTGACCAAG 58.368 47.619 1.65 0.00 0.00 3.61
547 919 1.670811 GATTATGCACCGTGACCAAGG 59.329 52.381 1.65 0.44 35.99 3.61
548 920 0.398696 TTATGCACCGTGACCAAGGT 59.601 50.000 1.65 1.77 43.97 3.50
552 924 3.148084 ACCGTGACCAAGGTGGAG 58.852 61.111 6.82 0.00 41.60 3.86
553 925 2.347490 CCGTGACCAAGGTGGAGG 59.653 66.667 0.18 0.00 40.96 4.30
554 926 2.214216 CCGTGACCAAGGTGGAGGA 61.214 63.158 0.18 0.00 40.96 3.71
555 927 1.293498 CGTGACCAAGGTGGAGGAG 59.707 63.158 0.18 0.00 40.96 3.69
556 928 1.185618 CGTGACCAAGGTGGAGGAGA 61.186 60.000 0.18 0.00 40.96 3.71
557 929 1.056660 GTGACCAAGGTGGAGGAGAA 58.943 55.000 0.18 0.00 40.96 2.87
558 930 1.420138 GTGACCAAGGTGGAGGAGAAA 59.580 52.381 0.18 0.00 40.96 2.52
559 931 2.131854 TGACCAAGGTGGAGGAGAAAA 58.868 47.619 0.18 0.00 40.96 2.29
560 932 2.158667 TGACCAAGGTGGAGGAGAAAAC 60.159 50.000 0.18 0.00 40.96 2.43
561 933 1.202770 ACCAAGGTGGAGGAGAAAACG 60.203 52.381 0.18 0.00 40.96 3.60
562 934 1.071699 CCAAGGTGGAGGAGAAAACGA 59.928 52.381 0.00 0.00 40.96 3.85
563 935 2.417719 CAAGGTGGAGGAGAAAACGAG 58.582 52.381 0.00 0.00 0.00 4.18
564 936 2.011122 AGGTGGAGGAGAAAACGAGA 57.989 50.000 0.00 0.00 0.00 4.04
565 937 1.896465 AGGTGGAGGAGAAAACGAGAG 59.104 52.381 0.00 0.00 0.00 3.20
566 938 1.893801 GGTGGAGGAGAAAACGAGAGA 59.106 52.381 0.00 0.00 0.00 3.10
567 939 2.299297 GGTGGAGGAGAAAACGAGAGAA 59.701 50.000 0.00 0.00 0.00 2.87
568 940 3.318886 GTGGAGGAGAAAACGAGAGAAC 58.681 50.000 0.00 0.00 0.00 3.01
569 941 3.006003 GTGGAGGAGAAAACGAGAGAACT 59.994 47.826 0.00 0.00 0.00 3.01
570 942 3.641906 TGGAGGAGAAAACGAGAGAACTT 59.358 43.478 0.00 0.00 0.00 2.66
571 943 4.831155 TGGAGGAGAAAACGAGAGAACTTA 59.169 41.667 0.00 0.00 0.00 2.24
572 944 5.303589 TGGAGGAGAAAACGAGAGAACTTAA 59.696 40.000 0.00 0.00 0.00 1.85
573 945 6.014499 TGGAGGAGAAAACGAGAGAACTTAAT 60.014 38.462 0.00 0.00 0.00 1.40
574 946 6.311690 GGAGGAGAAAACGAGAGAACTTAATG 59.688 42.308 0.00 0.00 0.00 1.90
575 947 6.760291 AGGAGAAAACGAGAGAACTTAATGT 58.240 36.000 0.00 0.00 0.00 2.71
576 948 7.217906 AGGAGAAAACGAGAGAACTTAATGTT 58.782 34.615 0.00 0.00 42.38 2.71
620 992 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
621 993 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
622 994 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
623 995 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
624 996 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
625 997 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
626 998 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
627 999 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
628 1000 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
629 1001 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
630 1002 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
631 1003 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
632 1004 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
633 1005 0.040157 CCACTGCATGTCGTGTTTGG 60.040 55.000 13.12 0.00 0.00 3.28
634 1006 0.662619 CACTGCATGTCGTGTTTGGT 59.337 50.000 7.95 0.00 0.00 3.67
635 1007 1.870402 CACTGCATGTCGTGTTTGGTA 59.130 47.619 7.95 0.00 0.00 3.25
636 1008 2.096268 CACTGCATGTCGTGTTTGGTAG 60.096 50.000 7.95 0.00 0.00 3.18
637 1009 2.143122 CTGCATGTCGTGTTTGGTAGT 58.857 47.619 0.00 0.00 0.00 2.73
638 1010 2.139917 TGCATGTCGTGTTTGGTAGTC 58.860 47.619 0.00 0.00 0.00 2.59
639 1011 2.224185 TGCATGTCGTGTTTGGTAGTCT 60.224 45.455 0.00 0.00 0.00 3.24
640 1012 2.412089 GCATGTCGTGTTTGGTAGTCTC 59.588 50.000 0.00 0.00 0.00 3.36
641 1013 3.649073 CATGTCGTGTTTGGTAGTCTCA 58.351 45.455 0.00 0.00 0.00 3.27
642 1014 3.804786 TGTCGTGTTTGGTAGTCTCAA 57.195 42.857 0.00 0.00 0.00 3.02
643 1015 3.713288 TGTCGTGTTTGGTAGTCTCAAG 58.287 45.455 0.00 0.00 0.00 3.02
644 1016 3.131577 TGTCGTGTTTGGTAGTCTCAAGT 59.868 43.478 0.00 0.00 0.00 3.16
645 1017 3.734735 GTCGTGTTTGGTAGTCTCAAGTC 59.265 47.826 0.00 0.00 0.00 3.01
646 1018 3.382227 TCGTGTTTGGTAGTCTCAAGTCA 59.618 43.478 0.00 0.00 0.00 3.41
647 1019 4.038763 TCGTGTTTGGTAGTCTCAAGTCAT 59.961 41.667 0.00 0.00 0.00 3.06
648 1020 4.750098 CGTGTTTGGTAGTCTCAAGTCATT 59.250 41.667 0.00 0.00 0.00 2.57
649 1021 5.924254 CGTGTTTGGTAGTCTCAAGTCATTA 59.076 40.000 0.00 0.00 0.00 1.90
650 1022 6.422701 CGTGTTTGGTAGTCTCAAGTCATTAA 59.577 38.462 0.00 0.00 0.00 1.40
651 1023 7.042321 CGTGTTTGGTAGTCTCAAGTCATTAAA 60.042 37.037 0.00 0.00 0.00 1.52
652 1024 8.617809 GTGTTTGGTAGTCTCAAGTCATTAAAA 58.382 33.333 0.00 0.00 0.00 1.52
653 1025 9.179909 TGTTTGGTAGTCTCAAGTCATTAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
654 1026 9.447040 GTTTGGTAGTCTCAAGTCATTAAAAAC 57.553 33.333 0.00 0.00 0.00 2.43
655 1027 8.740123 TTGGTAGTCTCAAGTCATTAAAAACA 57.260 30.769 0.00 0.00 0.00 2.83
656 1028 8.918202 TGGTAGTCTCAAGTCATTAAAAACAT 57.082 30.769 0.00 0.00 0.00 2.71
657 1029 8.783093 TGGTAGTCTCAAGTCATTAAAAACATG 58.217 33.333 0.00 0.00 0.00 3.21
658 1030 7.750903 GGTAGTCTCAAGTCATTAAAAACATGC 59.249 37.037 0.00 0.00 0.00 4.06
659 1031 7.275888 AGTCTCAAGTCATTAAAAACATGCA 57.724 32.000 0.00 0.00 0.00 3.96
660 1032 7.141363 AGTCTCAAGTCATTAAAAACATGCAC 58.859 34.615 0.00 0.00 0.00 4.57
661 1033 6.917477 GTCTCAAGTCATTAAAAACATGCACA 59.083 34.615 0.00 0.00 0.00 4.57
662 1034 6.917477 TCTCAAGTCATTAAAAACATGCACAC 59.083 34.615 0.00 0.00 0.00 3.82
663 1035 5.982516 TCAAGTCATTAAAAACATGCACACC 59.017 36.000 0.00 0.00 0.00 4.16
664 1036 4.881920 AGTCATTAAAAACATGCACACCC 58.118 39.130 0.00 0.00 0.00 4.61
665 1037 3.993736 GTCATTAAAAACATGCACACCCC 59.006 43.478 0.00 0.00 0.00 4.95
666 1038 3.643320 TCATTAAAAACATGCACACCCCA 59.357 39.130 0.00 0.00 0.00 4.96
667 1039 3.460857 TTAAAAACATGCACACCCCAC 57.539 42.857 0.00 0.00 0.00 4.61
668 1040 1.198713 AAAAACATGCACACCCCACA 58.801 45.000 0.00 0.00 0.00 4.17
669 1041 1.422531 AAAACATGCACACCCCACAT 58.577 45.000 0.00 0.00 0.00 3.21
670 1042 0.968405 AAACATGCACACCCCACATC 59.032 50.000 0.00 0.00 0.00 3.06
671 1043 0.112995 AACATGCACACCCCACATCT 59.887 50.000 0.00 0.00 0.00 2.90
672 1044 0.322816 ACATGCACACCCCACATCTC 60.323 55.000 0.00 0.00 0.00 2.75
673 1045 0.034767 CATGCACACCCCACATCTCT 60.035 55.000 0.00 0.00 0.00 3.10
674 1046 0.700564 ATGCACACCCCACATCTCTT 59.299 50.000 0.00 0.00 0.00 2.85
675 1047 1.357137 TGCACACCCCACATCTCTTA 58.643 50.000 0.00 0.00 0.00 2.10
676 1048 1.915489 TGCACACCCCACATCTCTTAT 59.085 47.619 0.00 0.00 0.00 1.73
677 1049 2.308570 TGCACACCCCACATCTCTTATT 59.691 45.455 0.00 0.00 0.00 1.40
678 1050 2.684881 GCACACCCCACATCTCTTATTG 59.315 50.000 0.00 0.00 0.00 1.90
679 1051 3.282021 CACACCCCACATCTCTTATTGG 58.718 50.000 0.00 0.00 0.00 3.16
680 1052 2.919602 ACACCCCACATCTCTTATTGGT 59.080 45.455 0.00 0.00 0.00 3.67
681 1053 3.333680 ACACCCCACATCTCTTATTGGTT 59.666 43.478 0.00 0.00 0.00 3.67
682 1054 4.538490 ACACCCCACATCTCTTATTGGTTA 59.462 41.667 0.00 0.00 0.00 2.85
683 1055 5.014755 ACACCCCACATCTCTTATTGGTTAA 59.985 40.000 0.00 0.00 0.00 2.01
684 1056 6.129179 CACCCCACATCTCTTATTGGTTAAT 58.871 40.000 0.00 0.00 0.00 1.40
685 1057 7.092174 ACACCCCACATCTCTTATTGGTTAATA 60.092 37.037 0.00 0.00 0.00 0.98
686 1058 7.944554 CACCCCACATCTCTTATTGGTTAATAT 59.055 37.037 0.00 0.00 0.00 1.28
687 1059 7.944554 ACCCCACATCTCTTATTGGTTAATATG 59.055 37.037 0.00 0.00 0.00 1.78
688 1060 7.944554 CCCCACATCTCTTATTGGTTAATATGT 59.055 37.037 0.00 0.00 0.00 2.29
689 1061 9.003658 CCCACATCTCTTATTGGTTAATATGTC 57.996 37.037 0.00 0.00 0.00 3.06
690 1062 9.559732 CCACATCTCTTATTGGTTAATATGTCA 57.440 33.333 0.00 0.00 0.00 3.58
697 1069 9.679661 TCTTATTGGTTAATATGTCAAGAAGCA 57.320 29.630 0.00 0.00 37.94 3.91
701 1073 9.995003 ATTGGTTAATATGTCAAGAAGCAAAAA 57.005 25.926 0.00 0.00 39.91 1.94
728 1100 0.100503 AGAATTTAATGCACCGCGCC 59.899 50.000 0.00 0.00 41.33 6.53
732 1104 0.730265 TTTAATGCACCGCGCCTAAG 59.270 50.000 0.00 0.00 41.33 2.18
733 1105 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
734 1106 1.087202 TAATGCACCGCGCCTAAGTG 61.087 55.000 0.00 4.02 41.33 3.16
735 1107 3.605749 ATGCACCGCGCCTAAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
736 1108 3.047877 GCACCGCGCCTAAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
737 1109 2.613506 GCACCGCGCCTAAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
738 1110 1.946267 CACCGCGCCTAAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
739 1111 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
740 1112 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
741 1113 1.209127 CGCGCCTAAGTGTTTTGGG 59.791 57.895 0.00 0.00 30.91 4.12
742 1114 1.231958 CGCGCCTAAGTGTTTTGGGA 61.232 55.000 0.00 0.00 30.91 4.37
743 1115 1.173913 GCGCCTAAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 30.91 3.85
744 1116 1.544246 GCGCCTAAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 30.91 3.01
745 1117 2.750712 GCGCCTAAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 30.91 1.75
746 1118 3.380320 GCGCCTAAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 30.91 1.28
747 1119 4.142249 GCGCCTAAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 30.91 1.40
748 1120 5.623596 GCGCCTAAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 30.91 1.40
749 1121 5.804979 CGCCTAAGTGTTTTGGGATTATTTG 59.195 40.000 0.00 0.00 30.91 2.32
751 1123 6.295632 GCCTAAGTGTTTTGGGATTATTTGGT 60.296 38.462 0.00 0.00 30.91 3.67
753 1125 8.154203 CCTAAGTGTTTTGGGATTATTTGGTTT 58.846 33.333 0.00 0.00 0.00 3.27
755 1127 8.445275 AAGTGTTTTGGGATTATTTGGTTTTC 57.555 30.769 0.00 0.00 0.00 2.29
756 1128 6.704050 AGTGTTTTGGGATTATTTGGTTTTCG 59.296 34.615 0.00 0.00 0.00 3.46
757 1129 6.480651 GTGTTTTGGGATTATTTGGTTTTCGT 59.519 34.615 0.00 0.00 0.00 3.85
758 1130 7.652507 GTGTTTTGGGATTATTTGGTTTTCGTA 59.347 33.333 0.00 0.00 0.00 3.43
759 1131 8.202137 TGTTTTGGGATTATTTGGTTTTCGTAA 58.798 29.630 0.00 0.00 0.00 3.18
760 1132 8.705134 GTTTTGGGATTATTTGGTTTTCGTAAG 58.295 33.333 0.00 0.00 0.00 2.34
780 1152 5.821516 AAGATGACTTACTCACCTAGACG 57.178 43.478 0.00 0.00 34.28 4.18
782 1154 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
783 1155 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
785 1157 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
786 1158 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
919 4090 2.315901 GTGCACTTCGGCATACAAAAC 58.684 47.619 10.32 0.00 46.92 2.43
928 4103 3.371591 TCGGCATACAAAACGTACATTCC 59.628 43.478 0.00 0.00 31.27 3.01
940 4115 1.906105 TACATTCCCGGCCTCACCAC 61.906 60.000 0.00 0.00 39.03 4.16
948 4123 4.341783 GCCTCACCACTGCTGCCT 62.342 66.667 0.00 0.00 0.00 4.75
949 4124 2.359602 CCTCACCACTGCTGCCTG 60.360 66.667 0.00 0.00 0.00 4.85
950 4125 2.429058 CTCACCACTGCTGCCTGT 59.571 61.111 0.00 0.00 0.00 4.00
952 4127 3.667282 CACCACTGCTGCCTGTGC 61.667 66.667 14.64 0.00 38.96 4.57
979 4160 4.466828 CATGCTTGGTTTACTTCGAGTTG 58.533 43.478 0.00 0.00 0.00 3.16
982 4163 3.003378 GCTTGGTTTACTTCGAGTTGCTT 59.997 43.478 0.00 0.00 0.00 3.91
983 4164 4.527564 CTTGGTTTACTTCGAGTTGCTTG 58.472 43.478 0.00 0.00 0.00 4.01
984 4165 2.875933 TGGTTTACTTCGAGTTGCTTGG 59.124 45.455 0.00 0.00 0.00 3.61
1221 4421 4.208686 GCCTCCTACCTCGCCGTG 62.209 72.222 0.00 0.00 0.00 4.94
1417 4617 2.037772 ACATTTGTTCTCTGCGTCTCCT 59.962 45.455 0.00 0.00 0.00 3.69
1548 4784 3.004734 GCTGCAGGTACAAAACATCAACT 59.995 43.478 17.12 0.00 0.00 3.16
1556 4800 9.398170 CAGGTACAAAACATCAACTAATTCTTG 57.602 33.333 0.00 0.00 0.00 3.02
1573 4834 7.473027 AATTCTTGCAATCTTTTTGTGTGAG 57.527 32.000 0.00 0.00 0.00 3.51
1597 4859 7.512992 AGTATGGACCTAGAAAAGATGGAATG 58.487 38.462 0.00 0.00 0.00 2.67
1628 4890 5.608019 TGCTTCTGCTAGGAACTGAATCCT 61.608 45.833 10.65 10.65 43.85 3.24
1679 4950 2.871633 TGTGTTGTGTGCACAGATACTG 59.128 45.455 22.40 0.00 42.94 2.74
1748 5019 2.569404 GGATAAGAAGATGGAGGCCGAT 59.431 50.000 0.00 0.00 0.00 4.18
1749 5020 3.368948 GGATAAGAAGATGGAGGCCGATC 60.369 52.174 0.00 0.14 0.00 3.69
1750 5021 1.799933 AAGAAGATGGAGGCCGATCT 58.200 50.000 8.67 8.67 0.00 2.75
1751 5022 1.337118 AGAAGATGGAGGCCGATCTC 58.663 55.000 13.45 3.43 0.00 2.75
1752 5023 1.043816 GAAGATGGAGGCCGATCTCA 58.956 55.000 13.45 2.90 35.58 3.27
1753 5024 1.000731 GAAGATGGAGGCCGATCTCAG 59.999 57.143 13.45 0.00 35.58 3.35
1820 5099 3.428870 CGCATATGTTCCGGTGATTCTAC 59.571 47.826 0.00 0.00 0.00 2.59
1825 5104 7.627513 GCATATGTTCCGGTGATTCTACAAAAA 60.628 37.037 0.00 0.00 0.00 1.94
1917 5201 0.579630 TGAACACACGACGATGTTGC 59.420 50.000 21.20 14.67 39.13 4.17
1931 5215 1.904287 TGTTGCGGTATTGAAGCCTT 58.096 45.000 0.00 0.00 0.00 4.35
1936 5220 1.539827 GCGGTATTGAAGCCTTGTGTT 59.460 47.619 0.00 0.00 0.00 3.32
1958 5248 3.154473 TCGCCGGGAAGGAGATGG 61.154 66.667 2.18 0.00 44.12 3.51
1987 5277 2.202932 AAGCGAGCGCCATACTGG 60.203 61.111 11.66 0.00 43.17 4.00
2029 5319 4.790765 GCCACTGCCTCTTTCTTTATTT 57.209 40.909 0.00 0.00 0.00 1.40
2030 5320 5.139435 GCCACTGCCTCTTTCTTTATTTT 57.861 39.130 0.00 0.00 0.00 1.82
2031 5321 5.541845 GCCACTGCCTCTTTCTTTATTTTT 58.458 37.500 0.00 0.00 0.00 1.94
2055 5345 7.639113 TTTTTCTGTACATCAGGTTTTCTGT 57.361 32.000 0.00 0.00 43.76 3.41
2056 5346 7.639113 TTTTCTGTACATCAGGTTTTCTGTT 57.361 32.000 0.00 0.00 43.76 3.16
2057 5347 7.639113 TTTCTGTACATCAGGTTTTCTGTTT 57.361 32.000 0.00 0.00 43.76 2.83
2334 5645 7.432350 TTGTCATGCCCAAAAATAAAATGTC 57.568 32.000 0.00 0.00 0.00 3.06
2343 5654 9.002600 GCCCAAAAATAAAATGTCTCTGAAAAT 57.997 29.630 0.00 0.00 0.00 1.82
2794 6113 9.868277 AAAAGTTGACATGTGTTGAAAAATAGA 57.132 25.926 1.15 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.034544 CCAATAAAAACCTCTGAAACAAAGAAG 57.965 33.333 0.00 0.00 0.00 2.85
3 4 8.299990 TCCAATAAAAACCTCTGAAACAAAGA 57.700 30.769 0.00 0.00 0.00 2.52
4 5 8.940768 TTCCAATAAAAACCTCTGAAACAAAG 57.059 30.769 0.00 0.00 0.00 2.77
6 7 9.898152 AAATTCCAATAAAAACCTCTGAAACAA 57.102 25.926 0.00 0.00 0.00 2.83
7 8 9.898152 AAAATTCCAATAAAAACCTCTGAAACA 57.102 25.926 0.00 0.00 0.00 2.83
58 59 5.649782 ATCAAACCACTGGCATAGAAAAG 57.350 39.130 0.00 0.00 0.00 2.27
64 65 4.160065 CCAATGAATCAAACCACTGGCATA 59.840 41.667 0.00 0.00 0.00 3.14
68 69 4.439153 CGATCCAATGAATCAAACCACTGG 60.439 45.833 0.00 0.00 0.00 4.00
70 71 4.588899 TCGATCCAATGAATCAAACCACT 58.411 39.130 0.00 0.00 0.00 4.00
100 101 3.454082 TGGAAAGTGGCACAAAAATTCCT 59.546 39.130 25.26 3.42 44.16 3.36
110 111 5.841957 AGAAATCATATGGAAAGTGGCAC 57.158 39.130 10.29 10.29 0.00 5.01
112 113 8.854614 ATACTAGAAATCATATGGAAAGTGGC 57.145 34.615 2.13 0.00 0.00 5.01
113 114 9.442047 GGATACTAGAAATCATATGGAAAGTGG 57.558 37.037 2.13 0.00 0.00 4.00
125 139 6.931838 ACGTTTGAGTGGATACTAGAAATCA 58.068 36.000 0.00 0.00 37.25 2.57
180 194 9.768662 GGGATTTAAGTTATTTGATTGCATCAT 57.231 29.630 0.00 0.00 39.39 2.45
194 208 7.707624 TCTCAGTTCTACGGGATTTAAGTTA 57.292 36.000 0.00 0.00 0.00 2.24
196 210 6.380274 TCATCTCAGTTCTACGGGATTTAAGT 59.620 38.462 0.00 0.00 0.00 2.24
197 211 6.806751 TCATCTCAGTTCTACGGGATTTAAG 58.193 40.000 0.00 0.00 0.00 1.85
198 212 6.183360 CCTCATCTCAGTTCTACGGGATTTAA 60.183 42.308 0.00 0.00 0.00 1.52
199 213 5.302059 CCTCATCTCAGTTCTACGGGATTTA 59.698 44.000 0.00 0.00 0.00 1.40
205 219 3.948473 TCTTCCTCATCTCAGTTCTACGG 59.052 47.826 0.00 0.00 0.00 4.02
206 220 4.396478 TGTCTTCCTCATCTCAGTTCTACG 59.604 45.833 0.00 0.00 0.00 3.51
215 229 7.301868 AGGATTAGAATGTCTTCCTCATCTC 57.698 40.000 0.00 0.00 29.94 2.75
222 236 9.620259 AGAAAACATAGGATTAGAATGTCTTCC 57.380 33.333 0.00 0.00 33.16 3.46
256 270 5.038033 CAGGATTCGAAAAACACGGAAAAA 58.962 37.500 0.00 0.00 0.00 1.94
264 278 4.071423 TGATCTGCAGGATTCGAAAAACA 58.929 39.130 15.13 0.00 34.33 2.83
267 281 5.003160 TCTTTGATCTGCAGGATTCGAAAA 58.997 37.500 15.13 5.89 34.33 2.29
271 285 3.790091 TCTCTTTGATCTGCAGGATTCG 58.210 45.455 15.13 0.00 34.33 3.34
277 291 1.666054 GGCCTCTCTTTGATCTGCAG 58.334 55.000 7.63 7.63 0.00 4.41
280 294 4.494091 TTTAGGGCCTCTCTTTGATCTG 57.506 45.455 10.74 0.00 0.00 2.90
286 300 3.193782 ACAGGATTTAGGGCCTCTCTTT 58.806 45.455 10.74 0.00 30.41 2.52
287 301 2.774809 GACAGGATTTAGGGCCTCTCTT 59.225 50.000 10.74 0.00 30.41 2.85
376 747 2.639065 GCCCATCAAAATGAGTACGGA 58.361 47.619 0.00 0.00 34.61 4.69
488 860 3.635373 CCTACACGAAGGGAGTAGCATTA 59.365 47.826 0.00 0.00 35.15 1.90
489 861 2.431057 CCTACACGAAGGGAGTAGCATT 59.569 50.000 0.00 0.00 35.15 3.56
490 862 2.032620 CCTACACGAAGGGAGTAGCAT 58.967 52.381 0.00 0.00 35.15 3.79
491 863 1.272313 ACCTACACGAAGGGAGTAGCA 60.272 52.381 7.86 0.00 41.32 3.49
492 864 1.134560 CACCTACACGAAGGGAGTAGC 59.865 57.143 7.86 0.00 41.32 3.58
493 865 2.683867 CTCACCTACACGAAGGGAGTAG 59.316 54.545 7.86 0.00 41.32 2.57
494 866 2.040813 ACTCACCTACACGAAGGGAGTA 59.959 50.000 17.02 0.00 41.48 2.59
495 867 1.203025 ACTCACCTACACGAAGGGAGT 60.203 52.381 14.83 14.83 41.32 3.85
497 869 2.885135 TACTCACCTACACGAAGGGA 57.115 50.000 7.86 2.75 41.32 4.20
498 870 2.824341 ACTTACTCACCTACACGAAGGG 59.176 50.000 7.86 0.00 41.32 3.95
500 872 4.761235 TGACTTACTCACCTACACGAAG 57.239 45.455 0.00 0.00 0.00 3.79
501 873 5.717078 AATGACTTACTCACCTACACGAA 57.283 39.130 0.00 0.00 0.00 3.85
502 874 5.717078 AAATGACTTACTCACCTACACGA 57.283 39.130 0.00 0.00 0.00 4.35
503 875 7.310664 TCTAAAATGACTTACTCACCTACACG 58.689 38.462 0.00 0.00 0.00 4.49
504 876 9.654663 AATCTAAAATGACTTACTCACCTACAC 57.345 33.333 0.00 0.00 0.00 2.90
508 880 9.331282 GCATAATCTAAAATGACTTACTCACCT 57.669 33.333 0.00 0.00 0.00 4.00
509 881 9.109393 TGCATAATCTAAAATGACTTACTCACC 57.891 33.333 0.00 0.00 0.00 4.02
510 882 9.922305 GTGCATAATCTAAAATGACTTACTCAC 57.078 33.333 0.00 0.00 0.00 3.51
511 883 9.109393 GGTGCATAATCTAAAATGACTTACTCA 57.891 33.333 0.00 0.00 0.00 3.41
513 885 7.769044 ACGGTGCATAATCTAAAATGACTTACT 59.231 33.333 0.00 0.00 0.00 2.24
514 886 7.850982 CACGGTGCATAATCTAAAATGACTTAC 59.149 37.037 0.00 0.00 0.00 2.34
515 887 7.766738 TCACGGTGCATAATCTAAAATGACTTA 59.233 33.333 2.51 0.00 0.00 2.24
516 888 6.597672 TCACGGTGCATAATCTAAAATGACTT 59.402 34.615 2.51 0.00 0.00 3.01
517 889 6.037172 GTCACGGTGCATAATCTAAAATGACT 59.963 38.462 2.51 0.00 31.18 3.41
518 890 6.192360 GTCACGGTGCATAATCTAAAATGAC 58.808 40.000 2.51 0.00 0.00 3.06
519 891 5.295787 GGTCACGGTGCATAATCTAAAATGA 59.704 40.000 2.51 0.00 0.00 2.57
520 892 5.065859 TGGTCACGGTGCATAATCTAAAATG 59.934 40.000 2.51 0.00 0.00 2.32
521 893 5.189928 TGGTCACGGTGCATAATCTAAAAT 58.810 37.500 2.51 0.00 0.00 1.82
522 894 4.580868 TGGTCACGGTGCATAATCTAAAA 58.419 39.130 2.51 0.00 0.00 1.52
523 895 4.209307 TGGTCACGGTGCATAATCTAAA 57.791 40.909 2.51 0.00 0.00 1.85
524 896 3.897141 TGGTCACGGTGCATAATCTAA 57.103 42.857 2.51 0.00 0.00 2.10
525 897 3.431626 CCTTGGTCACGGTGCATAATCTA 60.432 47.826 2.51 0.00 0.00 1.98
526 898 2.632377 CTTGGTCACGGTGCATAATCT 58.368 47.619 2.51 0.00 0.00 2.40
527 899 1.670811 CCTTGGTCACGGTGCATAATC 59.329 52.381 2.51 0.00 0.00 1.75
528 900 1.004277 ACCTTGGTCACGGTGCATAAT 59.996 47.619 2.51 0.00 31.12 1.28
529 901 0.398696 ACCTTGGTCACGGTGCATAA 59.601 50.000 2.51 0.00 31.12 1.90
530 902 0.321210 CACCTTGGTCACGGTGCATA 60.321 55.000 12.58 0.00 42.56 3.14
531 903 1.600636 CACCTTGGTCACGGTGCAT 60.601 57.895 12.58 0.00 42.56 3.96
532 904 2.203139 CACCTTGGTCACGGTGCA 60.203 61.111 12.58 0.00 42.56 4.57
533 905 2.978010 CCACCTTGGTCACGGTGC 60.978 66.667 17.82 0.00 46.01 5.01
534 906 1.301716 CTCCACCTTGGTCACGGTG 60.302 63.158 16.70 16.70 46.67 4.94
535 907 2.516888 CCTCCACCTTGGTCACGGT 61.517 63.158 0.00 0.00 39.03 4.83
536 908 2.172483 CTCCTCCACCTTGGTCACGG 62.172 65.000 0.00 0.00 39.03 4.94
537 909 1.185618 TCTCCTCCACCTTGGTCACG 61.186 60.000 0.00 0.00 39.03 4.35
538 910 1.056660 TTCTCCTCCACCTTGGTCAC 58.943 55.000 0.00 0.00 39.03 3.67
539 911 1.814429 TTTCTCCTCCACCTTGGTCA 58.186 50.000 0.00 0.00 39.03 4.02
540 912 2.505405 GTTTTCTCCTCCACCTTGGTC 58.495 52.381 0.00 0.00 39.03 4.02
541 913 1.202770 CGTTTTCTCCTCCACCTTGGT 60.203 52.381 0.00 0.00 39.03 3.67
542 914 1.071699 TCGTTTTCTCCTCCACCTTGG 59.928 52.381 0.00 0.00 39.43 3.61
543 915 2.037251 TCTCGTTTTCTCCTCCACCTTG 59.963 50.000 0.00 0.00 0.00 3.61
544 916 2.300437 CTCTCGTTTTCTCCTCCACCTT 59.700 50.000 0.00 0.00 0.00 3.50
545 917 1.896465 CTCTCGTTTTCTCCTCCACCT 59.104 52.381 0.00 0.00 0.00 4.00
546 918 1.893801 TCTCTCGTTTTCTCCTCCACC 59.106 52.381 0.00 0.00 0.00 4.61
547 919 3.006003 AGTTCTCTCGTTTTCTCCTCCAC 59.994 47.826 0.00 0.00 0.00 4.02
548 920 3.231818 AGTTCTCTCGTTTTCTCCTCCA 58.768 45.455 0.00 0.00 0.00 3.86
549 921 3.945981 AGTTCTCTCGTTTTCTCCTCC 57.054 47.619 0.00 0.00 0.00 4.30
550 922 6.869388 ACATTAAGTTCTCTCGTTTTCTCCTC 59.131 38.462 0.00 0.00 0.00 3.71
551 923 6.760291 ACATTAAGTTCTCTCGTTTTCTCCT 58.240 36.000 0.00 0.00 0.00 3.69
552 924 7.422878 AACATTAAGTTCTCTCGTTTTCTCC 57.577 36.000 0.00 0.00 34.74 3.71
595 967 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
596 968 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
597 969 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
598 970 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
599 971 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
600 972 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
602 974 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
603 975 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
604 976 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
605 977 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
606 978 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
607 979 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
608 980 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
609 981 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
610 982 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
611 983 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
612 984 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
613 985 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
614 986 0.040157 CCAAACACGACATGCAGTGG 60.040 55.000 20.60 3.36 42.25 4.00
615 987 0.662619 ACCAAACACGACATGCAGTG 59.337 50.000 16.62 16.62 43.46 3.66
616 988 2.143122 CTACCAAACACGACATGCAGT 58.857 47.619 0.00 0.00 0.00 4.40
617 989 2.143122 ACTACCAAACACGACATGCAG 58.857 47.619 0.00 0.00 0.00 4.41
618 990 2.139917 GACTACCAAACACGACATGCA 58.860 47.619 0.00 0.00 0.00 3.96
619 991 2.412089 GAGACTACCAAACACGACATGC 59.588 50.000 0.00 0.00 0.00 4.06
620 992 3.649073 TGAGACTACCAAACACGACATG 58.351 45.455 0.00 0.00 0.00 3.21
621 993 4.202223 ACTTGAGACTACCAAACACGACAT 60.202 41.667 0.00 0.00 0.00 3.06
622 994 3.131577 ACTTGAGACTACCAAACACGACA 59.868 43.478 0.00 0.00 0.00 4.35
623 995 3.714391 ACTTGAGACTACCAAACACGAC 58.286 45.455 0.00 0.00 0.00 4.34
624 996 3.382227 TGACTTGAGACTACCAAACACGA 59.618 43.478 0.00 0.00 0.00 4.35
625 997 3.713288 TGACTTGAGACTACCAAACACG 58.287 45.455 0.00 0.00 0.00 4.49
626 998 7.724305 TTAATGACTTGAGACTACCAAACAC 57.276 36.000 0.00 0.00 0.00 3.32
627 999 8.740123 TTTTAATGACTTGAGACTACCAAACA 57.260 30.769 0.00 0.00 0.00 2.83
628 1000 9.447040 GTTTTTAATGACTTGAGACTACCAAAC 57.553 33.333 0.00 0.00 0.00 2.93
629 1001 9.179909 TGTTTTTAATGACTTGAGACTACCAAA 57.820 29.630 0.00 0.00 0.00 3.28
630 1002 8.740123 TGTTTTTAATGACTTGAGACTACCAA 57.260 30.769 0.00 0.00 0.00 3.67
631 1003 8.783093 CATGTTTTTAATGACTTGAGACTACCA 58.217 33.333 0.00 0.00 0.00 3.25
632 1004 7.750903 GCATGTTTTTAATGACTTGAGACTACC 59.249 37.037 0.00 0.00 0.00 3.18
633 1005 8.289618 TGCATGTTTTTAATGACTTGAGACTAC 58.710 33.333 0.00 0.00 0.00 2.73
634 1006 8.289618 GTGCATGTTTTTAATGACTTGAGACTA 58.710 33.333 0.00 0.00 0.00 2.59
635 1007 7.141363 GTGCATGTTTTTAATGACTTGAGACT 58.859 34.615 0.00 0.00 0.00 3.24
636 1008 6.917477 TGTGCATGTTTTTAATGACTTGAGAC 59.083 34.615 0.00 5.36 0.00 3.36
637 1009 6.917477 GTGTGCATGTTTTTAATGACTTGAGA 59.083 34.615 0.00 0.00 0.00 3.27
638 1010 6.144402 GGTGTGCATGTTTTTAATGACTTGAG 59.856 38.462 0.00 0.00 0.00 3.02
639 1011 5.982516 GGTGTGCATGTTTTTAATGACTTGA 59.017 36.000 0.00 0.00 0.00 3.02
640 1012 5.177327 GGGTGTGCATGTTTTTAATGACTTG 59.823 40.000 0.00 0.00 0.00 3.16
641 1013 5.296748 GGGTGTGCATGTTTTTAATGACTT 58.703 37.500 0.00 0.00 0.00 3.01
642 1014 4.262420 GGGGTGTGCATGTTTTTAATGACT 60.262 41.667 0.00 0.00 0.00 3.41
643 1015 3.993736 GGGGTGTGCATGTTTTTAATGAC 59.006 43.478 0.00 0.00 0.00 3.06
644 1016 3.643320 TGGGGTGTGCATGTTTTTAATGA 59.357 39.130 0.00 0.00 0.00 2.57
645 1017 3.745458 GTGGGGTGTGCATGTTTTTAATG 59.255 43.478 0.00 0.00 0.00 1.90
646 1018 3.389329 TGTGGGGTGTGCATGTTTTTAAT 59.611 39.130 0.00 0.00 0.00 1.40
647 1019 2.766263 TGTGGGGTGTGCATGTTTTTAA 59.234 40.909 0.00 0.00 0.00 1.52
648 1020 2.388735 TGTGGGGTGTGCATGTTTTTA 58.611 42.857 0.00 0.00 0.00 1.52
649 1021 1.198713 TGTGGGGTGTGCATGTTTTT 58.801 45.000 0.00 0.00 0.00 1.94
650 1022 1.344114 GATGTGGGGTGTGCATGTTTT 59.656 47.619 0.00 0.00 0.00 2.43
651 1023 0.968405 GATGTGGGGTGTGCATGTTT 59.032 50.000 0.00 0.00 0.00 2.83
652 1024 0.112995 AGATGTGGGGTGTGCATGTT 59.887 50.000 0.00 0.00 0.00 2.71
653 1025 0.322816 GAGATGTGGGGTGTGCATGT 60.323 55.000 0.00 0.00 0.00 3.21
654 1026 0.034767 AGAGATGTGGGGTGTGCATG 60.035 55.000 0.00 0.00 0.00 4.06
655 1027 0.700564 AAGAGATGTGGGGTGTGCAT 59.299 50.000 0.00 0.00 0.00 3.96
656 1028 1.357137 TAAGAGATGTGGGGTGTGCA 58.643 50.000 0.00 0.00 0.00 4.57
657 1029 2.684881 CAATAAGAGATGTGGGGTGTGC 59.315 50.000 0.00 0.00 0.00 4.57
658 1030 3.282021 CCAATAAGAGATGTGGGGTGTG 58.718 50.000 0.00 0.00 0.00 3.82
659 1031 2.919602 ACCAATAAGAGATGTGGGGTGT 59.080 45.455 0.00 0.00 35.32 4.16
660 1032 3.652057 ACCAATAAGAGATGTGGGGTG 57.348 47.619 0.00 0.00 35.32 4.61
661 1033 5.789574 TTAACCAATAAGAGATGTGGGGT 57.210 39.130 0.00 0.00 35.32 4.95
662 1034 7.944554 ACATATTAACCAATAAGAGATGTGGGG 59.055 37.037 0.00 0.00 35.32 4.96
663 1035 8.924511 ACATATTAACCAATAAGAGATGTGGG 57.075 34.615 0.00 0.00 35.32 4.61
664 1036 9.559732 TGACATATTAACCAATAAGAGATGTGG 57.440 33.333 0.00 0.00 37.17 4.17
671 1043 9.679661 TGCTTCTTGACATATTAACCAATAAGA 57.320 29.630 0.00 0.00 30.50 2.10
675 1047 9.995003 TTTTTGCTTCTTGACATATTAACCAAT 57.005 25.926 0.00 0.00 0.00 3.16
698 1070 7.088272 GGTGCATTAAATTCTACCTCGTTTTT 58.912 34.615 0.00 0.00 0.00 1.94
699 1071 6.617879 GGTGCATTAAATTCTACCTCGTTTT 58.382 36.000 0.00 0.00 0.00 2.43
700 1072 5.163794 CGGTGCATTAAATTCTACCTCGTTT 60.164 40.000 0.00 0.00 0.00 3.60
701 1073 4.331717 CGGTGCATTAAATTCTACCTCGTT 59.668 41.667 0.00 0.00 0.00 3.85
702 1074 3.869246 CGGTGCATTAAATTCTACCTCGT 59.131 43.478 0.00 0.00 0.00 4.18
703 1075 3.303132 GCGGTGCATTAAATTCTACCTCG 60.303 47.826 0.00 0.00 0.00 4.63
704 1076 3.303132 CGCGGTGCATTAAATTCTACCTC 60.303 47.826 0.00 0.00 0.00 3.85
705 1077 2.612212 CGCGGTGCATTAAATTCTACCT 59.388 45.455 0.00 0.00 0.00 3.08
706 1078 2.853281 GCGCGGTGCATTAAATTCTACC 60.853 50.000 8.83 0.00 45.45 3.18
707 1079 2.372350 GCGCGGTGCATTAAATTCTAC 58.628 47.619 8.83 0.00 45.45 2.59
708 1080 2.748461 GCGCGGTGCATTAAATTCTA 57.252 45.000 8.83 0.00 45.45 2.10
709 1081 3.622459 GCGCGGTGCATTAAATTCT 57.378 47.368 8.83 0.00 45.45 2.40
728 1100 9.554395 AAAACCAAATAATCCCAAAACACTTAG 57.446 29.630 0.00 0.00 0.00 2.18
732 1104 6.480651 ACGAAAACCAAATAATCCCAAAACAC 59.519 34.615 0.00 0.00 0.00 3.32
733 1105 6.583562 ACGAAAACCAAATAATCCCAAAACA 58.416 32.000 0.00 0.00 0.00 2.83
734 1106 8.590719 TTACGAAAACCAAATAATCCCAAAAC 57.409 30.769 0.00 0.00 0.00 2.43
735 1107 8.639761 TCTTACGAAAACCAAATAATCCCAAAA 58.360 29.630 0.00 0.00 0.00 2.44
736 1108 8.179509 TCTTACGAAAACCAAATAATCCCAAA 57.820 30.769 0.00 0.00 0.00 3.28
737 1109 7.762588 TCTTACGAAAACCAAATAATCCCAA 57.237 32.000 0.00 0.00 0.00 4.12
738 1110 7.612244 TCATCTTACGAAAACCAAATAATCCCA 59.388 33.333 0.00 0.00 0.00 4.37
739 1111 7.913821 GTCATCTTACGAAAACCAAATAATCCC 59.086 37.037 0.00 0.00 0.00 3.85
740 1112 8.674607 AGTCATCTTACGAAAACCAAATAATCC 58.325 33.333 0.00 0.00 0.00 3.01
749 1121 8.003820 AGGTGAGTAAGTCATCTTACGAAAACC 61.004 40.741 16.73 16.73 45.09 3.27
751 1123 6.989659 AGGTGAGTAAGTCATCTTACGAAAA 58.010 36.000 10.94 0.00 45.09 2.29
753 1125 7.065563 GTCTAGGTGAGTAAGTCATCTTACGAA 59.934 40.741 10.94 3.34 45.09 3.85
755 1127 6.509837 CGTCTAGGTGAGTAAGTCATCTTACG 60.510 46.154 11.46 11.46 45.09 3.18
756 1128 6.238429 CCGTCTAGGTGAGTAAGTCATCTTAC 60.238 46.154 9.30 9.30 45.09 2.34
757 1129 5.821470 CCGTCTAGGTGAGTAAGTCATCTTA 59.179 44.000 0.00 0.00 45.09 2.10
758 1130 4.641094 CCGTCTAGGTGAGTAAGTCATCTT 59.359 45.833 0.00 0.00 45.09 2.40
760 1132 4.197750 TCCGTCTAGGTGAGTAAGTCATC 58.802 47.826 0.00 0.00 41.99 2.92
761 1133 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
762 1134 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
763 1135 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
764 1136 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
765 1137 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
766 1138 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
767 1139 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
768 1140 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
769 1141 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
770 1142 1.588239 TACTCCCTCCGTCTAGGTGA 58.412 55.000 0.00 0.00 41.99 4.02
771 1143 2.022934 GTTACTCCCTCCGTCTAGGTG 58.977 57.143 0.00 0.00 41.99 4.00
772 1144 1.407989 CGTTACTCCCTCCGTCTAGGT 60.408 57.143 0.00 0.00 41.99 3.08
775 1147 2.026822 ACTTCGTTACTCCCTCCGTCTA 60.027 50.000 0.00 0.00 0.00 2.59
776 1148 1.271817 ACTTCGTTACTCCCTCCGTCT 60.272 52.381 0.00 0.00 0.00 4.18
777 1149 1.172175 ACTTCGTTACTCCCTCCGTC 58.828 55.000 0.00 0.00 0.00 4.79
779 1151 3.379372 TGATAACTTCGTTACTCCCTCCG 59.621 47.826 0.00 0.00 30.49 4.63
780 1152 4.996788 TGATAACTTCGTTACTCCCTCC 57.003 45.455 0.00 0.00 30.49 4.30
782 1154 4.529377 TGGTTGATAACTTCGTTACTCCCT 59.471 41.667 0.00 0.00 30.49 4.20
783 1155 4.628766 GTGGTTGATAACTTCGTTACTCCC 59.371 45.833 0.00 0.00 30.49 4.30
785 1157 6.774354 TTGTGGTTGATAACTTCGTTACTC 57.226 37.500 0.00 0.00 30.49 2.59
786 1158 6.293244 GCTTTGTGGTTGATAACTTCGTTACT 60.293 38.462 0.00 0.00 30.49 2.24
861 2355 1.079503 GGTTCTCGTGTGAATCCTGC 58.920 55.000 0.00 0.00 0.00 4.85
919 4090 1.520787 GTGAGGCCGGGAATGTACG 60.521 63.158 2.18 0.00 0.00 3.67
953 4128 3.505680 TCGAAGTAAACCAAGCATGCAAT 59.494 39.130 21.98 5.17 0.00 3.56
973 4154 1.071471 ACCTCCACCAAGCAACTCG 59.929 57.895 0.00 0.00 0.00 4.18
979 4160 2.358737 CGACCACCTCCACCAAGC 60.359 66.667 0.00 0.00 0.00 4.01
982 4163 2.920912 GGACGACCACCTCCACCA 60.921 66.667 0.00 0.00 35.97 4.17
983 4164 2.920912 TGGACGACCACCTCCACC 60.921 66.667 1.37 0.00 41.77 4.61
1417 4617 1.077357 ACAGGAACGTGGTGGCAAA 60.077 52.632 0.00 0.00 0.00 3.68
1548 4784 8.196771 ACTCACACAAAAAGATTGCAAGAATTA 58.803 29.630 4.94 0.00 0.00 1.40
1556 4800 5.858581 GTCCATACTCACACAAAAAGATTGC 59.141 40.000 0.00 0.00 0.00 3.56
1567 4811 6.282199 TCTTTTCTAGGTCCATACTCACAC 57.718 41.667 0.00 0.00 0.00 3.82
1573 4834 7.283329 ACATTCCATCTTTTCTAGGTCCATAC 58.717 38.462 0.00 0.00 0.00 2.39
1597 4859 6.644592 CAGTTCCTAGCAGAAGCAGATTATAC 59.355 42.308 0.00 0.00 45.49 1.47
1628 4890 6.183360 CCAGGCTGCTACTGAGTACTATTAAA 60.183 42.308 9.56 0.00 38.20 1.52
1633 4902 2.656002 CCAGGCTGCTACTGAGTACTA 58.344 52.381 9.56 0.00 38.20 1.82
1679 4950 4.229876 GCTCATAGCCAAACAGTTTGTTC 58.770 43.478 21.98 14.16 35.78 3.18
1748 5019 2.040947 TCTGCTCTTCCTGAGACTGAGA 59.959 50.000 0.00 0.00 45.39 3.27
1749 5020 2.424601 CTCTGCTCTTCCTGAGACTGAG 59.575 54.545 0.00 0.00 45.39 3.35
1750 5021 2.040947 TCTCTGCTCTTCCTGAGACTGA 59.959 50.000 0.00 0.00 45.39 3.41
1751 5022 2.445427 TCTCTGCTCTTCCTGAGACTG 58.555 52.381 0.00 0.00 45.39 3.51
1752 5023 2.825532 GTTCTCTGCTCTTCCTGAGACT 59.174 50.000 0.00 0.00 45.39 3.24
1753 5024 2.825532 AGTTCTCTGCTCTTCCTGAGAC 59.174 50.000 0.00 0.00 45.39 3.36
1843 5126 3.118992 TGCACAAACAGCACAAATGGTAA 60.119 39.130 0.00 0.00 37.02 2.85
1917 5201 2.161609 GGAACACAAGGCTTCAATACCG 59.838 50.000 0.00 0.00 0.00 4.02
1931 5215 4.308458 CCCGGCGACTGGAACACA 62.308 66.667 9.30 0.00 36.72 3.72
1936 5220 4.689549 TCCTTCCCGGCGACTGGA 62.690 66.667 9.30 0.00 42.59 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.