Multiple sequence alignment - TraesCS7A01G095600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G095600 chr7A 100.000 2339 0 0 1 2339 58646316 58648654 0.000000e+00 4320
1 TraesCS7A01G095600 chr7A 92.559 981 70 2 1 980 482164081 482163103 0.000000e+00 1404
2 TraesCS7A01G095600 chr7A 92.253 981 73 2 1 980 456270882 456269904 0.000000e+00 1387
3 TraesCS7A01G095600 chr6A 93.079 968 63 3 14 980 228507832 228508796 0.000000e+00 1413
4 TraesCS7A01G095600 chr3A 92.574 983 66 6 1 980 57845778 57846756 0.000000e+00 1404
5 TraesCS7A01G095600 chr3A 85.938 128 18 0 1449 1576 103690653 103690780 1.130000e-28 137
6 TraesCS7A01G095600 chr4A 92.464 982 70 3 1 980 497792954 497791975 0.000000e+00 1400
7 TraesCS7A01G095600 chr2A 92.665 968 68 2 14 980 422379352 422380317 0.000000e+00 1391
8 TraesCS7A01G095600 chr5A 92.253 981 73 2 1 980 275746382 275747360 0.000000e+00 1387
9 TraesCS7A01G095600 chr5A 94.368 799 35 7 1548 2338 244006587 244007383 0.000000e+00 1218
10 TraesCS7A01G095600 chr5A 95.960 99 4 0 1449 1547 267960427 267960525 6.690000e-36 161
11 TraesCS7A01G095600 chr1A 92.253 981 72 3 1 980 486295185 486296162 0.000000e+00 1387
12 TraesCS7A01G095600 chr1A 94.421 466 20 5 978 1439 168449425 168448962 0.000000e+00 712
13 TraesCS7A01G095600 chr1D 92.159 982 72 4 1 980 452436272 452437250 0.000000e+00 1382
14 TraesCS7A01G095600 chr1D 94.250 800 37 6 1546 2338 476655567 476654770 0.000000e+00 1214
15 TraesCS7A01G095600 chr1D 96.137 466 14 2 978 1439 254499141 254499606 0.000000e+00 758
16 TraesCS7A01G095600 chr1D 94.545 165 9 0 1449 1613 296448143 296448307 2.980000e-64 255
17 TraesCS7A01G095600 chr1D 94.949 99 5 0 1449 1547 258868825 258868727 3.110000e-34 156
18 TraesCS7A01G095600 chr2D 94.074 810 38 7 1537 2338 113574955 113574148 0.000000e+00 1221
19 TraesCS7A01G095600 chr2D 94.257 801 36 7 1546 2338 73366578 73365780 0.000000e+00 1216
20 TraesCS7A01G095600 chr2D 93.604 813 42 7 1534 2338 155302254 155303064 0.000000e+00 1205
21 TraesCS7A01G095600 chr3D 94.382 801 34 9 1547 2339 320311055 320311852 0.000000e+00 1219
22 TraesCS7A01G095600 chr3D 94.949 99 5 0 1449 1547 118333725 118333823 3.110000e-34 156
23 TraesCS7A01G095600 chr4D 94.161 805 35 9 1543 2338 100851151 100851952 0.000000e+00 1216
24 TraesCS7A01G095600 chr4D 94.361 798 36 7 1548 2338 346107527 346108322 0.000000e+00 1216
25 TraesCS7A01G095600 chr4D 93.991 466 24 2 978 1439 19917636 19918101 0.000000e+00 702
26 TraesCS7A01G095600 chr4D 94.949 99 5 0 1449 1547 111655045 111655143 3.110000e-34 156
27 TraesCS7A01G095600 chr3B 90.434 899 75 7 1449 2338 681809313 681808417 0.000000e+00 1173
28 TraesCS7A01G095600 chr3B 95.708 466 16 2 978 1439 201515823 201516288 0.000000e+00 747
29 TraesCS7A01G095600 chrUn 96.352 466 13 2 978 1439 30306208 30305743 0.000000e+00 763
30 TraesCS7A01G095600 chrUn 94.949 99 5 0 1449 1547 74033645 74033743 3.110000e-34 156
31 TraesCS7A01G095600 chr5D 96.137 466 14 4 978 1439 560873611 560874076 0.000000e+00 758
32 TraesCS7A01G095600 chr5D 95.708 466 16 2 978 1439 6200139 6199674 0.000000e+00 747
33 TraesCS7A01G095600 chr5D 95.717 467 14 4 978 1439 329163320 329163785 0.000000e+00 747
34 TraesCS7A01G095600 chr5D 94.949 99 5 0 1449 1547 358264257 358264355 3.110000e-34 156
35 TraesCS7A01G095600 chr6B 95.708 466 16 2 978 1439 121821134 121820669 0.000000e+00 747


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G095600 chr7A 58646316 58648654 2338 False 4320 4320 100.000 1 2339 1 chr7A.!!$F1 2338
1 TraesCS7A01G095600 chr7A 482163103 482164081 978 True 1404 1404 92.559 1 980 1 chr7A.!!$R2 979
2 TraesCS7A01G095600 chr7A 456269904 456270882 978 True 1387 1387 92.253 1 980 1 chr7A.!!$R1 979
3 TraesCS7A01G095600 chr6A 228507832 228508796 964 False 1413 1413 93.079 14 980 1 chr6A.!!$F1 966
4 TraesCS7A01G095600 chr3A 57845778 57846756 978 False 1404 1404 92.574 1 980 1 chr3A.!!$F1 979
5 TraesCS7A01G095600 chr4A 497791975 497792954 979 True 1400 1400 92.464 1 980 1 chr4A.!!$R1 979
6 TraesCS7A01G095600 chr2A 422379352 422380317 965 False 1391 1391 92.665 14 980 1 chr2A.!!$F1 966
7 TraesCS7A01G095600 chr5A 275746382 275747360 978 False 1387 1387 92.253 1 980 1 chr5A.!!$F3 979
8 TraesCS7A01G095600 chr5A 244006587 244007383 796 False 1218 1218 94.368 1548 2338 1 chr5A.!!$F1 790
9 TraesCS7A01G095600 chr1A 486295185 486296162 977 False 1387 1387 92.253 1 980 1 chr1A.!!$F1 979
10 TraesCS7A01G095600 chr1D 452436272 452437250 978 False 1382 1382 92.159 1 980 1 chr1D.!!$F3 979
11 TraesCS7A01G095600 chr1D 476654770 476655567 797 True 1214 1214 94.250 1546 2338 1 chr1D.!!$R2 792
12 TraesCS7A01G095600 chr2D 113574148 113574955 807 True 1221 1221 94.074 1537 2338 1 chr2D.!!$R2 801
13 TraesCS7A01G095600 chr2D 73365780 73366578 798 True 1216 1216 94.257 1546 2338 1 chr2D.!!$R1 792
14 TraesCS7A01G095600 chr2D 155302254 155303064 810 False 1205 1205 93.604 1534 2338 1 chr2D.!!$F1 804
15 TraesCS7A01G095600 chr3D 320311055 320311852 797 False 1219 1219 94.382 1547 2339 1 chr3D.!!$F2 792
16 TraesCS7A01G095600 chr4D 100851151 100851952 801 False 1216 1216 94.161 1543 2338 1 chr4D.!!$F2 795
17 TraesCS7A01G095600 chr4D 346107527 346108322 795 False 1216 1216 94.361 1548 2338 1 chr4D.!!$F4 790
18 TraesCS7A01G095600 chr3B 681808417 681809313 896 True 1173 1173 90.434 1449 2338 1 chr3B.!!$R1 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 322 0.380378 TGTGCCTTCGAAGTTGTTGC 59.620 50.000 23.03 18.23 0.00 4.17 F
348 350 1.337387 GGCGCTAGAACGATAGACCTT 59.663 52.381 7.64 0.00 41.38 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1168 0.030638 CCTGCACCAGTTCGTTTTGG 59.969 55.0 0.0 1.31 40.38 3.28 R
1770 1777 0.037046 GGTGCTTTTGCCCTGAATGG 60.037 55.0 0.0 0.00 46.87 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.988716 ACCCTCGTGGACGCCTCA 62.989 66.667 4.76 0.00 39.60 3.86
75 76 6.637657 TCCGGACTTCTTCTTATTTTCCTAC 58.362 40.000 0.00 0.00 0.00 3.18
130 132 6.989659 TCTATTAGAACTGTTTTGGAGTCGT 58.010 36.000 0.00 0.00 0.00 4.34
177 179 1.194772 CCTTTTCAGAGGTCGAAACGC 59.805 52.381 0.00 0.00 32.27 4.84
260 262 6.364701 TCAACATTTATGGGATTACCTGAGG 58.635 40.000 0.00 0.00 41.11 3.86
290 292 3.485463 TGATTCTTTGACCGTTCACCT 57.515 42.857 0.00 0.00 0.00 4.00
320 322 0.380378 TGTGCCTTCGAAGTTGTTGC 59.620 50.000 23.03 18.23 0.00 4.17
331 333 3.119463 CGAAGTTGTTGCTTTTTATGGCG 59.881 43.478 0.00 0.00 0.00 5.69
333 335 2.035832 AGTTGTTGCTTTTTATGGCGCT 59.964 40.909 7.64 0.00 0.00 5.92
348 350 1.337387 GGCGCTAGAACGATAGACCTT 59.663 52.381 7.64 0.00 41.38 3.50
359 361 3.497640 ACGATAGACCTTCTCGATAACGG 59.502 47.826 0.00 0.00 39.03 4.44
475 478 5.798125 TTTGTATCCTTTTGTCATGCCAA 57.202 34.783 0.00 0.00 0.00 4.52
483 486 6.644347 TCCTTTTGTCATGCCAACTTTTAAA 58.356 32.000 0.00 0.00 0.00 1.52
555 558 8.969260 TCATCAAGTGAGCTAATGTCAAATAT 57.031 30.769 0.00 0.00 31.80 1.28
736 739 9.020813 CATAATGCATCATCAAGTTTCTTTGAG 57.979 33.333 0.00 0.00 40.16 3.02
842 845 6.584185 TTGGATGATATGGAGATGCAATTG 57.416 37.500 0.00 0.00 0.00 2.32
885 888 1.726853 AGCATCTTACGAAAAGCGCT 58.273 45.000 2.64 2.64 46.04 5.92
895 898 7.396419 TCTTACGAAAAGCGCTATGAATAAAC 58.604 34.615 12.05 0.00 46.04 2.01
903 906 8.438676 AAAGCGCTATGAATAAACTATGAACT 57.561 30.769 12.05 0.00 0.00 3.01
904 907 7.413475 AGCGCTATGAATAAACTATGAACTG 57.587 36.000 8.99 0.00 0.00 3.16
963 966 8.079809 CCTCGGAAAAATAACTTCTTTAAGCAA 58.920 33.333 0.00 0.00 36.05 3.91
981 984 9.781633 TTTAAGCAACTTAATAGAGGTGTTACA 57.218 29.630 0.93 0.00 36.10 2.41
982 985 9.781633 TTAAGCAACTTAATAGAGGTGTTACAA 57.218 29.630 0.00 0.00 36.71 2.41
983 986 7.907214 AGCAACTTAATAGAGGTGTTACAAG 57.093 36.000 0.00 0.00 36.71 3.16
984 987 7.450903 AGCAACTTAATAGAGGTGTTACAAGT 58.549 34.615 0.00 0.00 36.71 3.16
985 988 8.591072 AGCAACTTAATAGAGGTGTTACAAGTA 58.409 33.333 0.00 0.00 36.71 2.24
986 989 9.211485 GCAACTTAATAGAGGTGTTACAAGTAA 57.789 33.333 0.00 0.00 36.71 2.24
989 992 9.716531 ACTTAATAGAGGTGTTACAAGTAAACC 57.283 33.333 12.42 12.42 31.95 3.27
990 993 9.715121 CTTAATAGAGGTGTTACAAGTAAACCA 57.285 33.333 18.04 4.17 33.08 3.67
991 994 9.715121 TTAATAGAGGTGTTACAAGTAAACCAG 57.285 33.333 18.04 0.00 33.08 4.00
992 995 5.881923 AGAGGTGTTACAAGTAAACCAGA 57.118 39.130 18.04 0.00 33.08 3.86
993 996 6.435292 AGAGGTGTTACAAGTAAACCAGAT 57.565 37.500 18.04 6.05 33.08 2.90
994 997 7.549147 AGAGGTGTTACAAGTAAACCAGATA 57.451 36.000 18.04 0.00 33.08 1.98
995 998 8.147244 AGAGGTGTTACAAGTAAACCAGATAT 57.853 34.615 18.04 5.60 33.08 1.63
996 999 8.041323 AGAGGTGTTACAAGTAAACCAGATATG 58.959 37.037 18.04 0.00 33.08 1.78
997 1000 7.110155 AGGTGTTACAAGTAAACCAGATATGG 58.890 38.462 4.39 4.39 33.08 2.74
998 1001 7.037873 AGGTGTTACAAGTAAACCAGATATGGA 60.038 37.037 14.70 0.00 33.08 3.41
999 1002 7.280205 GGTGTTACAAGTAAACCAGATATGGAG 59.720 40.741 14.70 0.00 32.03 3.86
1000 1003 8.038944 GTGTTACAAGTAAACCAGATATGGAGA 58.961 37.037 14.70 0.00 0.00 3.71
1001 1004 8.768397 TGTTACAAGTAAACCAGATATGGAGAT 58.232 33.333 14.70 0.92 0.00 2.75
1002 1005 9.046296 GTTACAAGTAAACCAGATATGGAGATG 57.954 37.037 14.70 5.71 0.00 2.90
1003 1006 6.595682 ACAAGTAAACCAGATATGGAGATGG 58.404 40.000 14.70 0.00 38.83 3.51
1004 1007 5.234466 AGTAAACCAGATATGGAGATGGC 57.766 43.478 14.70 0.00 36.21 4.40
1005 1008 2.847327 AACCAGATATGGAGATGGCG 57.153 50.000 14.70 0.00 36.21 5.69
1006 1009 2.015456 ACCAGATATGGAGATGGCGA 57.985 50.000 14.70 0.00 36.21 5.54
1007 1010 1.620819 ACCAGATATGGAGATGGCGAC 59.379 52.381 14.70 0.00 36.21 5.19
1008 1011 1.898472 CCAGATATGGAGATGGCGACT 59.102 52.381 0.00 0.00 0.00 4.18
1009 1012 3.092301 CCAGATATGGAGATGGCGACTA 58.908 50.000 0.00 0.00 0.00 2.59
1010 1013 3.511540 CCAGATATGGAGATGGCGACTAA 59.488 47.826 0.00 0.00 0.00 2.24
1011 1014 4.021104 CCAGATATGGAGATGGCGACTAAA 60.021 45.833 0.00 0.00 0.00 1.85
1012 1015 5.167121 CAGATATGGAGATGGCGACTAAAG 58.833 45.833 0.00 0.00 0.00 1.85
1013 1016 4.835615 AGATATGGAGATGGCGACTAAAGT 59.164 41.667 0.00 0.00 0.00 2.66
1014 1017 3.914426 ATGGAGATGGCGACTAAAGTT 57.086 42.857 0.00 0.00 0.00 2.66
1015 1018 2.972625 TGGAGATGGCGACTAAAGTTG 58.027 47.619 0.00 0.00 0.00 3.16
1016 1019 2.301870 TGGAGATGGCGACTAAAGTTGT 59.698 45.455 0.00 0.00 0.00 3.32
1017 1020 3.244422 TGGAGATGGCGACTAAAGTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
1018 1021 3.125316 GGAGATGGCGACTAAAGTTGTTG 59.875 47.826 0.00 0.00 0.00 3.33
1019 1022 3.740115 AGATGGCGACTAAAGTTGTTGT 58.260 40.909 0.00 0.00 0.00 3.32
1020 1023 4.134563 AGATGGCGACTAAAGTTGTTGTT 58.865 39.130 0.00 0.00 0.00 2.83
1021 1024 4.578928 AGATGGCGACTAAAGTTGTTGTTT 59.421 37.500 0.00 0.00 0.00 2.83
1022 1025 4.281525 TGGCGACTAAAGTTGTTGTTTC 57.718 40.909 0.00 0.00 0.00 2.78
1023 1026 3.065648 TGGCGACTAAAGTTGTTGTTTCC 59.934 43.478 0.00 0.00 0.00 3.13
1024 1027 3.065648 GGCGACTAAAGTTGTTGTTTCCA 59.934 43.478 0.00 0.00 0.00 3.53
1025 1028 4.261447 GGCGACTAAAGTTGTTGTTTCCAT 60.261 41.667 0.00 0.00 0.00 3.41
1026 1029 5.278604 GCGACTAAAGTTGTTGTTTCCATT 58.721 37.500 0.00 0.00 0.00 3.16
1027 1030 5.746721 GCGACTAAAGTTGTTGTTTCCATTT 59.253 36.000 0.00 0.00 0.00 2.32
1028 1031 6.254804 GCGACTAAAGTTGTTGTTTCCATTTT 59.745 34.615 0.00 0.00 0.00 1.82
1029 1032 7.201487 GCGACTAAAGTTGTTGTTTCCATTTTT 60.201 33.333 0.00 0.00 0.00 1.94
1030 1033 9.291664 CGACTAAAGTTGTTGTTTCCATTTTTA 57.708 29.630 0.00 0.00 0.00 1.52
1059 1062 9.869844 GAATTTCAAGATTACAATGGATCTACG 57.130 33.333 2.60 0.00 32.52 3.51
1060 1063 9.613428 AATTTCAAGATTACAATGGATCTACGA 57.387 29.630 0.00 1.28 32.52 3.43
1061 1064 9.613428 ATTTCAAGATTACAATGGATCTACGAA 57.387 29.630 0.00 5.98 32.52 3.85
1062 1065 9.443323 TTTCAAGATTACAATGGATCTACGAAA 57.557 29.630 14.75 14.75 34.71 3.46
1063 1066 9.443323 TTCAAGATTACAATGGATCTACGAAAA 57.557 29.630 0.00 0.00 32.52 2.29
1064 1067 9.098355 TCAAGATTACAATGGATCTACGAAAAG 57.902 33.333 0.00 0.00 32.52 2.27
1065 1068 9.098355 CAAGATTACAATGGATCTACGAAAAGA 57.902 33.333 0.00 0.00 32.52 2.52
1066 1069 9.838339 AAGATTACAATGGATCTACGAAAAGAT 57.162 29.630 0.00 0.00 38.95 2.40
1105 1108 9.661563 ACTAAAATGGAATATACAAAGTCGACA 57.338 29.630 19.50 0.00 0.00 4.35
1106 1109 9.916397 CTAAAATGGAATATACAAAGTCGACAC 57.084 33.333 19.50 0.00 0.00 3.67
1107 1110 8.561738 AAAATGGAATATACAAAGTCGACACT 57.438 30.769 19.50 0.63 0.00 3.55
1108 1111 9.661563 AAAATGGAATATACAAAGTCGACACTA 57.338 29.630 19.50 1.21 30.14 2.74
1109 1112 9.661563 AAATGGAATATACAAAGTCGACACTAA 57.338 29.630 19.50 0.00 30.14 2.24
1110 1113 9.832445 AATGGAATATACAAAGTCGACACTAAT 57.168 29.630 19.50 6.97 30.14 1.73
1111 1114 8.642908 TGGAATATACAAAGTCGACACTAATG 57.357 34.615 19.50 10.89 30.14 1.90
1112 1115 8.471609 TGGAATATACAAAGTCGACACTAATGA 58.528 33.333 19.50 0.00 30.14 2.57
1113 1116 9.477484 GGAATATACAAAGTCGACACTAATGAT 57.523 33.333 19.50 4.65 30.14 2.45
1142 1145 8.807948 ATAGAATTTATGGCTACACAAACTGT 57.192 30.769 0.00 0.00 36.82 3.55
1143 1146 7.524717 AGAATTTATGGCTACACAAACTGTT 57.475 32.000 0.00 0.00 33.91 3.16
1144 1147 7.370383 AGAATTTATGGCTACACAAACTGTTG 58.630 34.615 0.00 0.00 40.84 3.33
1145 1148 6.892658 ATTTATGGCTACACAAACTGTTGA 57.107 33.333 0.00 0.00 38.20 3.18
1146 1149 6.701145 TTTATGGCTACACAAACTGTTGAA 57.299 33.333 0.00 0.00 38.20 2.69
1147 1150 4.836125 ATGGCTACACAAACTGTTGAAG 57.164 40.909 0.00 0.00 38.20 3.02
1148 1151 3.879998 TGGCTACACAAACTGTTGAAGA 58.120 40.909 0.00 0.00 38.20 2.87
1149 1152 4.460263 TGGCTACACAAACTGTTGAAGAT 58.540 39.130 0.00 0.00 38.20 2.40
1150 1153 5.616270 TGGCTACACAAACTGTTGAAGATA 58.384 37.500 0.00 0.00 38.20 1.98
1151 1154 5.700832 TGGCTACACAAACTGTTGAAGATAG 59.299 40.000 0.00 0.00 38.20 2.08
1152 1155 5.701290 GGCTACACAAACTGTTGAAGATAGT 59.299 40.000 0.00 0.00 38.20 2.12
1153 1156 6.204882 GGCTACACAAACTGTTGAAGATAGTT 59.795 38.462 0.00 0.00 40.91 2.24
1154 1157 7.291567 GCTACACAAACTGTTGAAGATAGTTC 58.708 38.462 0.00 0.00 38.57 3.01
1155 1158 7.171678 GCTACACAAACTGTTGAAGATAGTTCT 59.828 37.037 0.00 0.00 38.57 3.01
1156 1159 9.692749 CTACACAAACTGTTGAAGATAGTTCTA 57.307 33.333 0.00 0.00 38.57 2.10
1157 1160 8.958119 ACACAAACTGTTGAAGATAGTTCTAA 57.042 30.769 0.00 0.00 38.57 2.10
1158 1161 9.391006 ACACAAACTGTTGAAGATAGTTCTAAA 57.609 29.630 0.00 0.00 38.57 1.85
1159 1162 9.651718 CACAAACTGTTGAAGATAGTTCTAAAC 57.348 33.333 0.00 0.00 38.57 2.01
1160 1163 8.837389 ACAAACTGTTGAAGATAGTTCTAAACC 58.163 33.333 0.00 0.00 38.57 3.27
1161 1164 9.057089 CAAACTGTTGAAGATAGTTCTAAACCT 57.943 33.333 0.00 0.00 38.57 3.50
1163 1166 9.930693 AACTGTTGAAGATAGTTCTAAACCTAG 57.069 33.333 0.00 0.00 35.03 3.02
1164 1167 8.532819 ACTGTTGAAGATAGTTCTAAACCTAGG 58.467 37.037 7.41 7.41 31.94 3.02
1165 1168 7.328737 TGTTGAAGATAGTTCTAAACCTAGGC 58.671 38.462 9.30 0.00 31.94 3.93
1166 1169 6.481434 TGAAGATAGTTCTAAACCTAGGCC 57.519 41.667 9.30 0.00 0.00 5.19
1167 1170 5.962031 TGAAGATAGTTCTAAACCTAGGCCA 59.038 40.000 9.30 0.00 0.00 5.36
1168 1171 6.442564 TGAAGATAGTTCTAAACCTAGGCCAA 59.557 38.462 9.30 0.00 0.00 4.52
1169 1172 6.886178 AGATAGTTCTAAACCTAGGCCAAA 57.114 37.500 9.30 0.00 0.00 3.28
1170 1173 7.266905 AGATAGTTCTAAACCTAGGCCAAAA 57.733 36.000 9.30 0.00 0.00 2.44
1171 1174 7.110810 AGATAGTTCTAAACCTAGGCCAAAAC 58.889 38.462 9.30 7.54 0.00 2.43
1172 1175 4.070009 AGTTCTAAACCTAGGCCAAAACG 58.930 43.478 9.30 0.00 0.00 3.60
1173 1176 4.067192 GTTCTAAACCTAGGCCAAAACGA 58.933 43.478 9.30 0.00 0.00 3.85
1174 1177 4.354893 TCTAAACCTAGGCCAAAACGAA 57.645 40.909 9.30 0.00 0.00 3.85
1175 1178 4.067192 TCTAAACCTAGGCCAAAACGAAC 58.933 43.478 9.30 0.00 0.00 3.95
1176 1179 2.651382 AACCTAGGCCAAAACGAACT 57.349 45.000 9.30 0.00 0.00 3.01
1177 1180 1.892209 ACCTAGGCCAAAACGAACTG 58.108 50.000 9.30 0.00 0.00 3.16
1178 1181 1.165270 CCTAGGCCAAAACGAACTGG 58.835 55.000 5.01 0.00 35.67 4.00
1179 1182 1.544759 CCTAGGCCAAAACGAACTGGT 60.545 52.381 5.01 0.00 34.97 4.00
1180 1183 1.535462 CTAGGCCAAAACGAACTGGTG 59.465 52.381 5.01 0.00 34.97 4.17
1181 1184 1.299850 GGCCAAAACGAACTGGTGC 60.300 57.895 0.00 0.00 34.97 5.01
1182 1185 1.435515 GCCAAAACGAACTGGTGCA 59.564 52.632 0.00 0.00 34.97 4.57
1183 1186 0.594796 GCCAAAACGAACTGGTGCAG 60.595 55.000 0.00 0.00 37.52 4.41
1184 1187 0.030638 CCAAAACGAACTGGTGCAGG 59.969 55.000 0.00 0.00 35.51 4.85
1185 1188 0.738389 CAAAACGAACTGGTGCAGGT 59.262 50.000 0.00 0.00 35.51 4.00
1186 1189 1.944024 CAAAACGAACTGGTGCAGGTA 59.056 47.619 0.00 0.00 35.51 3.08
1187 1190 1.878953 AAACGAACTGGTGCAGGTAG 58.121 50.000 0.00 0.00 35.51 3.18
1188 1191 0.756903 AACGAACTGGTGCAGGTAGT 59.243 50.000 0.00 0.00 38.58 2.73
1189 1192 0.756903 ACGAACTGGTGCAGGTAGTT 59.243 50.000 9.24 9.24 33.48 2.24
1190 1193 1.140252 ACGAACTGGTGCAGGTAGTTT 59.860 47.619 10.44 0.00 33.48 2.66
1191 1194 2.366266 ACGAACTGGTGCAGGTAGTTTA 59.634 45.455 10.44 0.00 33.48 2.01
1192 1195 2.735134 CGAACTGGTGCAGGTAGTTTAC 59.265 50.000 10.44 0.98 34.99 2.01
1193 1196 3.554337 CGAACTGGTGCAGGTAGTTTACT 60.554 47.826 10.44 0.00 34.99 2.24
1194 1197 3.402628 ACTGGTGCAGGTAGTTTACTG 57.597 47.619 0.00 0.00 35.51 2.74
1195 1198 2.969950 ACTGGTGCAGGTAGTTTACTGA 59.030 45.455 0.00 0.00 36.86 3.41
1196 1199 3.389983 ACTGGTGCAGGTAGTTTACTGAA 59.610 43.478 0.00 0.00 36.86 3.02
1197 1200 4.141574 ACTGGTGCAGGTAGTTTACTGAAA 60.142 41.667 0.00 0.00 36.86 2.69
1198 1201 4.131596 TGGTGCAGGTAGTTTACTGAAAC 58.868 43.478 0.00 0.00 44.56 2.78
1199 1202 3.501062 GGTGCAGGTAGTTTACTGAAACC 59.499 47.826 0.00 0.00 45.21 3.27
1200 1203 3.185797 GTGCAGGTAGTTTACTGAAACCG 59.814 47.826 0.00 0.00 45.21 4.44
1201 1204 3.181463 TGCAGGTAGTTTACTGAAACCGT 60.181 43.478 0.00 0.00 45.21 4.83
1202 1205 3.811497 GCAGGTAGTTTACTGAAACCGTT 59.189 43.478 0.00 0.00 45.21 4.44
1203 1206 4.319261 GCAGGTAGTTTACTGAAACCGTTG 60.319 45.833 0.00 0.00 45.21 4.10
1204 1207 5.051816 CAGGTAGTTTACTGAAACCGTTGA 58.948 41.667 0.00 0.00 45.21 3.18
1205 1208 5.524646 CAGGTAGTTTACTGAAACCGTTGAA 59.475 40.000 0.00 0.00 45.21 2.69
1206 1209 6.204108 CAGGTAGTTTACTGAAACCGTTGAAT 59.796 38.462 0.00 0.00 45.21 2.57
1207 1210 6.769341 AGGTAGTTTACTGAAACCGTTGAATT 59.231 34.615 0.00 0.00 45.21 2.17
1208 1211 7.041576 AGGTAGTTTACTGAAACCGTTGAATTC 60.042 37.037 0.00 0.00 45.21 2.17
1209 1212 5.744490 AGTTTACTGAAACCGTTGAATTCG 58.256 37.500 0.04 0.00 45.21 3.34
1221 1224 5.493133 CGTTGAATTCGGAATATGGGAAA 57.507 39.130 3.22 0.00 0.00 3.13
1222 1225 5.510671 CGTTGAATTCGGAATATGGGAAAG 58.489 41.667 3.22 0.00 0.00 2.62
1223 1226 5.065988 CGTTGAATTCGGAATATGGGAAAGT 59.934 40.000 3.22 0.00 0.00 2.66
1224 1227 6.495706 GTTGAATTCGGAATATGGGAAAGTC 58.504 40.000 3.22 0.00 0.00 3.01
1225 1228 4.814234 TGAATTCGGAATATGGGAAAGTCG 59.186 41.667 3.22 0.00 0.00 4.18
1226 1229 2.234300 TCGGAATATGGGAAAGTCGC 57.766 50.000 0.00 0.00 0.00 5.19
1227 1230 1.202604 TCGGAATATGGGAAAGTCGCC 60.203 52.381 0.00 0.00 0.00 5.54
1228 1231 1.605753 GGAATATGGGAAAGTCGCCC 58.394 55.000 0.00 0.00 46.22 6.13
1229 1232 1.605753 GAATATGGGAAAGTCGCCCC 58.394 55.000 0.00 0.00 45.40 5.80
1230 1233 0.179029 AATATGGGAAAGTCGCCCCG 60.179 55.000 0.00 0.00 45.40 5.73
1231 1234 2.052047 ATATGGGAAAGTCGCCCCGG 62.052 60.000 0.00 0.00 45.40 5.73
1234 1237 4.340246 GGAAAGTCGCCCCGGGTT 62.340 66.667 21.85 5.43 0.00 4.11
1235 1238 3.053896 GAAAGTCGCCCCGGGTTG 61.054 66.667 21.85 11.70 0.00 3.77
1236 1239 4.653888 AAAGTCGCCCCGGGTTGG 62.654 66.667 21.85 8.14 37.55 3.77
1245 1248 2.285144 CCGGGTTGGGGGACTACT 60.285 66.667 0.00 0.00 0.00 2.57
1246 1249 2.364780 CCGGGTTGGGGGACTACTC 61.365 68.421 0.00 0.00 0.00 2.59
1247 1250 2.364780 CGGGTTGGGGGACTACTCC 61.365 68.421 0.00 0.00 35.54 3.85
1248 1251 1.082392 GGGTTGGGGGACTACTCCT 59.918 63.158 0.00 0.00 36.76 3.69
1249 1252 0.549413 GGGTTGGGGGACTACTCCTT 60.549 60.000 0.00 0.00 36.76 3.36
1250 1253 1.369403 GGTTGGGGGACTACTCCTTT 58.631 55.000 0.00 0.00 36.76 3.11
1251 1254 1.709115 GGTTGGGGGACTACTCCTTTT 59.291 52.381 0.00 0.00 36.76 2.27
1252 1255 2.914941 GGTTGGGGGACTACTCCTTTTA 59.085 50.000 0.00 0.00 36.76 1.52
1253 1256 3.526430 GGTTGGGGGACTACTCCTTTTAT 59.474 47.826 0.00 0.00 36.76 1.40
1254 1257 4.524053 GTTGGGGGACTACTCCTTTTATG 58.476 47.826 0.00 0.00 36.76 1.90
1255 1258 3.120108 TGGGGGACTACTCCTTTTATGG 58.880 50.000 0.00 0.00 36.76 2.74
1256 1259 2.442126 GGGGGACTACTCCTTTTATGGG 59.558 54.545 0.00 0.00 36.76 4.00
1257 1260 2.442126 GGGGACTACTCCTTTTATGGGG 59.558 54.545 0.00 0.00 36.68 4.96
1258 1261 3.390819 GGGACTACTCCTTTTATGGGGA 58.609 50.000 0.00 0.00 36.68 4.81
1259 1262 3.981375 GGGACTACTCCTTTTATGGGGAT 59.019 47.826 0.00 0.00 36.68 3.85
1260 1263 4.041815 GGGACTACTCCTTTTATGGGGATC 59.958 50.000 0.00 0.00 36.68 3.36
1261 1264 4.262506 GGACTACTCCTTTTATGGGGATCG 60.263 50.000 0.00 0.00 33.07 3.69
1262 1265 2.640316 ACTCCTTTTATGGGGATCGC 57.360 50.000 0.06 0.06 0.00 4.58
1263 1266 1.843851 ACTCCTTTTATGGGGATCGCA 59.156 47.619 12.32 0.00 0.00 5.10
1264 1267 2.241176 ACTCCTTTTATGGGGATCGCAA 59.759 45.455 12.32 0.00 0.00 4.85
1265 1268 3.117512 ACTCCTTTTATGGGGATCGCAAT 60.118 43.478 12.32 8.55 0.00 3.56
1266 1269 3.221771 TCCTTTTATGGGGATCGCAATG 58.778 45.455 12.32 0.13 0.00 2.82
1267 1270 2.297033 CCTTTTATGGGGATCGCAATGG 59.703 50.000 12.32 5.31 0.00 3.16
1268 1271 1.327303 TTTATGGGGATCGCAATGGC 58.673 50.000 12.32 0.00 0.00 4.40
1269 1272 0.478072 TTATGGGGATCGCAATGGCT 59.522 50.000 12.32 0.00 38.10 4.75
1270 1273 0.478072 TATGGGGATCGCAATGGCTT 59.522 50.000 12.32 0.00 38.10 4.35
1271 1274 0.397535 ATGGGGATCGCAATGGCTTT 60.398 50.000 12.32 0.00 38.10 3.51
1272 1275 0.257328 TGGGGATCGCAATGGCTTTA 59.743 50.000 12.32 0.00 38.10 1.85
1273 1276 1.133513 TGGGGATCGCAATGGCTTTAT 60.134 47.619 12.32 0.00 38.10 1.40
1274 1277 1.963515 GGGGATCGCAATGGCTTTATT 59.036 47.619 12.32 0.00 38.10 1.40
1275 1278 2.029918 GGGGATCGCAATGGCTTTATTC 60.030 50.000 12.32 0.00 38.10 1.75
1276 1279 2.350772 GGGATCGCAATGGCTTTATTCG 60.351 50.000 4.64 0.00 38.10 3.34
1277 1280 2.310577 GATCGCAATGGCTTTATTCGC 58.689 47.619 0.00 0.00 38.10 4.70
1278 1281 1.378531 TCGCAATGGCTTTATTCGCT 58.621 45.000 0.00 0.00 38.10 4.93
1279 1282 2.556257 TCGCAATGGCTTTATTCGCTA 58.444 42.857 0.00 0.00 38.10 4.26
1280 1283 3.138304 TCGCAATGGCTTTATTCGCTAT 58.862 40.909 0.00 0.00 38.10 2.97
1281 1284 4.311606 TCGCAATGGCTTTATTCGCTATA 58.688 39.130 0.00 0.00 38.10 1.31
1282 1285 4.935205 TCGCAATGGCTTTATTCGCTATAT 59.065 37.500 0.00 0.00 38.10 0.86
1283 1286 5.411361 TCGCAATGGCTTTATTCGCTATATT 59.589 36.000 0.00 0.00 38.10 1.28
1284 1287 5.734498 CGCAATGGCTTTATTCGCTATATTC 59.266 40.000 0.00 0.00 38.10 1.75
1285 1288 6.030228 GCAATGGCTTTATTCGCTATATTCC 58.970 40.000 0.00 0.00 36.96 3.01
1286 1289 6.127897 GCAATGGCTTTATTCGCTATATTCCT 60.128 38.462 0.00 0.00 36.96 3.36
1287 1290 7.065803 GCAATGGCTTTATTCGCTATATTCCTA 59.934 37.037 0.00 0.00 36.96 2.94
1288 1291 9.113838 CAATGGCTTTATTCGCTATATTCCTAT 57.886 33.333 0.00 0.00 0.00 2.57
1289 1292 8.894768 ATGGCTTTATTCGCTATATTCCTATC 57.105 34.615 0.00 0.00 0.00 2.08
1290 1293 8.079211 TGGCTTTATTCGCTATATTCCTATCT 57.921 34.615 0.00 0.00 0.00 1.98
1291 1294 9.197306 TGGCTTTATTCGCTATATTCCTATCTA 57.803 33.333 0.00 0.00 0.00 1.98
1325 1328 9.893305 AGAAATTTACAATTCTTCCGTTTACTG 57.107 29.630 0.00 0.00 32.05 2.74
1326 1329 9.124807 GAAATTTACAATTCTTCCGTTTACTGG 57.875 33.333 0.00 0.00 0.00 4.00
1327 1330 7.989416 ATTTACAATTCTTCCGTTTACTGGA 57.011 32.000 0.00 0.00 0.00 3.86
1328 1331 6.790285 TTACAATTCTTCCGTTTACTGGAC 57.210 37.500 0.00 0.00 34.56 4.02
1329 1332 3.744426 ACAATTCTTCCGTTTACTGGACG 59.256 43.478 0.00 0.00 40.05 4.79
1340 1343 5.384787 CGTTTACTGGACGGAATTTTAACC 58.615 41.667 0.00 0.00 36.90 2.85
1341 1344 5.049543 CGTTTACTGGACGGAATTTTAACCA 60.050 40.000 0.00 0.00 36.90 3.67
1342 1345 6.513066 CGTTTACTGGACGGAATTTTAACCAA 60.513 38.462 0.00 0.00 36.90 3.67
1343 1346 7.372714 GTTTACTGGACGGAATTTTAACCAAT 58.627 34.615 0.00 0.00 0.00 3.16
1344 1347 7.527568 TTACTGGACGGAATTTTAACCAATT 57.472 32.000 0.00 0.00 0.00 2.32
1345 1348 8.632906 TTACTGGACGGAATTTTAACCAATTA 57.367 30.769 0.00 0.00 0.00 1.40
1346 1349 7.153217 ACTGGACGGAATTTTAACCAATTAG 57.847 36.000 0.00 0.00 0.00 1.73
1347 1350 6.152154 ACTGGACGGAATTTTAACCAATTAGG 59.848 38.462 0.00 0.00 45.67 2.69
1365 1368 9.939802 CCAATTAGGTTTCTACTAACTACAACT 57.060 33.333 0.00 0.00 33.63 3.16
1370 1373 8.946797 AGGTTTCTACTAACTACAACTAGGAA 57.053 34.615 0.00 0.00 0.00 3.36
1371 1374 9.022884 AGGTTTCTACTAACTACAACTAGGAAG 57.977 37.037 0.00 0.00 0.00 3.46
1372 1375 8.801299 GGTTTCTACTAACTACAACTAGGAAGT 58.199 37.037 0.00 0.00 37.65 3.01
1373 1376 9.838975 GTTTCTACTAACTACAACTAGGAAGTC 57.161 37.037 0.00 0.00 33.75 3.01
1374 1377 9.578576 TTTCTACTAACTACAACTAGGAAGTCA 57.421 33.333 0.00 0.00 33.75 3.41
1375 1378 8.789825 TCTACTAACTACAACTAGGAAGTCAG 57.210 38.462 0.00 0.00 33.75 3.51
1376 1379 8.600668 TCTACTAACTACAACTAGGAAGTCAGA 58.399 37.037 0.00 0.00 33.75 3.27
1377 1380 7.690952 ACTAACTACAACTAGGAAGTCAGAG 57.309 40.000 0.00 0.00 33.75 3.35
1378 1381 7.232910 ACTAACTACAACTAGGAAGTCAGAGT 58.767 38.462 0.00 0.00 33.75 3.24
1379 1382 6.980416 AACTACAACTAGGAAGTCAGAGTT 57.020 37.500 0.00 0.00 33.75 3.01
1380 1383 6.980416 ACTACAACTAGGAAGTCAGAGTTT 57.020 37.500 0.00 0.00 33.75 2.66
1381 1384 7.362802 ACTACAACTAGGAAGTCAGAGTTTT 57.637 36.000 0.00 0.00 33.75 2.43
1382 1385 7.793036 ACTACAACTAGGAAGTCAGAGTTTTT 58.207 34.615 0.00 0.00 33.75 1.94
1383 1386 7.927092 ACTACAACTAGGAAGTCAGAGTTTTTC 59.073 37.037 0.00 0.00 33.75 2.29
1384 1387 6.056236 ACAACTAGGAAGTCAGAGTTTTTCC 58.944 40.000 0.00 0.00 39.47 3.13
1385 1388 5.888982 ACTAGGAAGTCAGAGTTTTTCCA 57.111 39.130 5.07 0.00 41.19 3.53
1386 1389 6.441088 ACTAGGAAGTCAGAGTTTTTCCAT 57.559 37.500 5.07 0.00 41.19 3.41
1387 1390 6.468543 ACTAGGAAGTCAGAGTTTTTCCATC 58.531 40.000 5.07 0.00 41.19 3.51
1388 1391 4.657013 AGGAAGTCAGAGTTTTTCCATCC 58.343 43.478 5.07 0.00 41.19 3.51
1389 1392 4.104738 AGGAAGTCAGAGTTTTTCCATCCA 59.895 41.667 5.07 0.00 41.19 3.41
1390 1393 4.827284 GGAAGTCAGAGTTTTTCCATCCAA 59.173 41.667 0.00 0.00 39.09 3.53
1391 1394 5.301805 GGAAGTCAGAGTTTTTCCATCCAAA 59.698 40.000 0.00 0.00 39.09 3.28
1392 1395 6.183360 GGAAGTCAGAGTTTTTCCATCCAAAA 60.183 38.462 0.00 0.00 39.09 2.44
1393 1396 6.790232 AGTCAGAGTTTTTCCATCCAAAAA 57.210 33.333 0.00 0.00 33.72 1.94
1444 1447 7.962964 TCTAGATATTATGGCAGTTTTTCCG 57.037 36.000 0.00 0.00 0.00 4.30
1445 1448 7.506114 TCTAGATATTATGGCAGTTTTTCCGT 58.494 34.615 0.00 0.00 0.00 4.69
1446 1449 7.990886 TCTAGATATTATGGCAGTTTTTCCGTT 59.009 33.333 0.00 0.00 0.00 4.44
1447 1450 9.268268 CTAGATATTATGGCAGTTTTTCCGTTA 57.732 33.333 0.00 0.00 0.00 3.18
1456 1459 6.369615 TGGCAGTTTTTCCGTTATACTAGTTC 59.630 38.462 0.00 0.00 0.00 3.01
1457 1460 6.369615 GGCAGTTTTTCCGTTATACTAGTTCA 59.630 38.462 0.00 0.00 0.00 3.18
1473 1476 7.439108 ACTAGTTCAAATAGCTTCTACCCAT 57.561 36.000 0.00 0.00 0.00 4.00
1482 1485 8.548721 CAAATAGCTTCTACCCATTTAGTAACG 58.451 37.037 0.00 0.00 0.00 3.18
1487 1490 8.262933 AGCTTCTACCCATTTAGTAACGTAATT 58.737 33.333 0.00 0.00 0.00 1.40
1526 1529 5.546621 TGTGTATACCCATTAGAGGAAGC 57.453 43.478 0.00 0.00 0.00 3.86
1530 1533 6.260271 GTGTATACCCATTAGAGGAAGCAAAC 59.740 42.308 0.00 0.00 0.00 2.93
1532 1535 2.304761 ACCCATTAGAGGAAGCAAACGA 59.695 45.455 0.00 0.00 0.00 3.85
1542 1545 5.071788 AGAGGAAGCAAACGATCCCATATAA 59.928 40.000 0.00 0.00 33.55 0.98
1586 1589 2.488836 CCCTAGTTGGTTCCTACCCAT 58.511 52.381 0.30 0.00 44.35 4.00
1664 1667 0.695924 TCCCTCGAATGCCCTTTGAA 59.304 50.000 0.00 0.00 0.00 2.69
1779 1786 4.585581 TGTGCATATCATTTCCATTCAGGG 59.414 41.667 0.00 0.00 38.24 4.45
1807 1814 3.344515 CACCCTTTAAACTACCTGAGGC 58.655 50.000 0.00 0.00 0.00 4.70
1816 1823 8.871629 TTTAAACTACCTGAGGCAATTAATGA 57.128 30.769 0.00 0.00 0.00 2.57
2064 2072 7.551585 TGTTCACAAAACATCACCTACATTTT 58.448 30.769 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.685828 TTCACCGTTTTGGAATATTTTAGAAAG 57.314 29.630 0.00 0.00 42.00 2.62
106 108 6.989659 ACGACTCCAAAACAGTTCTAATAGA 58.010 36.000 0.00 0.00 0.00 1.98
130 132 6.437162 AGAGGTATGTGGTACGGTAAGTAAAA 59.563 38.462 0.00 0.00 37.02 1.52
170 172 2.251893 GACACCTTCTAGAGCGTTTCG 58.748 52.381 0.00 0.00 0.00 3.46
196 198 4.354987 ACCGTAACCCTGGAGGAGTATATA 59.645 45.833 0.00 0.00 39.89 0.86
197 199 3.141649 ACCGTAACCCTGGAGGAGTATAT 59.858 47.826 0.00 0.00 39.89 0.86
260 262 9.274065 GAACGGTCAAAGAATCAAACATTATAC 57.726 33.333 0.00 0.00 0.00 1.47
290 292 0.035439 GAAGGCACAAATCCGAGGGA 60.035 55.000 0.00 0.00 35.55 4.20
320 322 4.795970 ATCGTTCTAGCGCCATAAAAAG 57.204 40.909 2.29 0.00 0.00 2.27
331 333 3.808726 TCGAGAAGGTCTATCGTTCTAGC 59.191 47.826 3.40 0.00 46.78 3.42
333 335 6.145209 CGTTATCGAGAAGGTCTATCGTTCTA 59.855 42.308 4.38 0.00 46.78 2.10
348 350 2.431954 AGGTCCTTCCGTTATCGAGA 57.568 50.000 0.00 0.00 41.99 4.04
359 361 4.141597 CCTCTCTAAATGGGAAGGTCCTTC 60.142 50.000 21.73 21.73 39.52 3.46
398 400 7.959718 TGTTATACAACTCTCGTTTACGATC 57.040 36.000 5.34 0.00 40.40 3.69
496 499 5.396772 CCAGGCCTATGAGAATGTCAAACTA 60.397 44.000 3.98 0.00 39.19 2.24
503 506 1.898863 ACCCAGGCCTATGAGAATGT 58.101 50.000 3.98 0.00 0.00 2.71
555 558 3.845781 AACTTGCCAGTGAGAAGAGAA 57.154 42.857 7.80 0.00 31.60 2.87
701 704 6.270219 TGATGATGCATTATGGGCCTATAT 57.730 37.500 9.96 0.00 0.00 0.86
903 906 9.111519 TCCCTAGATATTTAATGACTAATGGCA 57.888 33.333 0.00 0.00 0.00 4.92
904 907 9.384764 GTCCCTAGATATTTAATGACTAATGGC 57.615 37.037 0.00 0.00 0.00 4.40
963 966 9.716531 GGTTTACTTGTAACACCTCTATTAAGT 57.283 33.333 12.91 0.00 0.00 2.24
980 983 5.471456 GCCATCTCCATATCTGGTTTACTTG 59.529 44.000 0.00 0.00 43.61 3.16
981 984 5.625150 GCCATCTCCATATCTGGTTTACTT 58.375 41.667 0.00 0.00 43.61 2.24
982 985 4.262635 CGCCATCTCCATATCTGGTTTACT 60.263 45.833 0.00 0.00 43.61 2.24
983 986 3.997021 CGCCATCTCCATATCTGGTTTAC 59.003 47.826 0.00 0.00 43.61 2.01
984 987 3.901222 TCGCCATCTCCATATCTGGTTTA 59.099 43.478 0.00 0.00 43.61 2.01
985 988 2.705658 TCGCCATCTCCATATCTGGTTT 59.294 45.455 0.00 0.00 43.61 3.27
986 989 2.037772 GTCGCCATCTCCATATCTGGTT 59.962 50.000 0.00 0.00 43.61 3.67
987 990 1.620819 GTCGCCATCTCCATATCTGGT 59.379 52.381 0.00 0.00 43.61 4.00
988 991 1.898472 AGTCGCCATCTCCATATCTGG 59.102 52.381 0.00 0.00 44.64 3.86
989 992 4.790765 TTAGTCGCCATCTCCATATCTG 57.209 45.455 0.00 0.00 0.00 2.90
990 993 4.835615 ACTTTAGTCGCCATCTCCATATCT 59.164 41.667 0.00 0.00 0.00 1.98
991 994 5.140747 ACTTTAGTCGCCATCTCCATATC 57.859 43.478 0.00 0.00 0.00 1.63
992 995 5.163301 ACAACTTTAGTCGCCATCTCCATAT 60.163 40.000 0.00 0.00 0.00 1.78
993 996 4.161565 ACAACTTTAGTCGCCATCTCCATA 59.838 41.667 0.00 0.00 0.00 2.74
994 997 3.055094 ACAACTTTAGTCGCCATCTCCAT 60.055 43.478 0.00 0.00 0.00 3.41
995 998 2.301870 ACAACTTTAGTCGCCATCTCCA 59.698 45.455 0.00 0.00 0.00 3.86
996 999 2.973945 ACAACTTTAGTCGCCATCTCC 58.026 47.619 0.00 0.00 0.00 3.71
997 1000 3.746492 ACAACAACTTTAGTCGCCATCTC 59.254 43.478 0.00 0.00 0.00 2.75
998 1001 3.740115 ACAACAACTTTAGTCGCCATCT 58.260 40.909 0.00 0.00 0.00 2.90
999 1002 4.483476 AACAACAACTTTAGTCGCCATC 57.517 40.909 0.00 0.00 0.00 3.51
1000 1003 4.261447 GGAAACAACAACTTTAGTCGCCAT 60.261 41.667 0.00 0.00 0.00 4.40
1001 1004 3.065648 GGAAACAACAACTTTAGTCGCCA 59.934 43.478 0.00 0.00 0.00 5.69
1002 1005 3.065648 TGGAAACAACAACTTTAGTCGCC 59.934 43.478 0.00 0.00 37.44 5.54
1003 1006 4.281525 TGGAAACAACAACTTTAGTCGC 57.718 40.909 0.00 0.00 37.44 5.19
1033 1036 9.869844 CGTAGATCCATTGTAATCTTGAAATTC 57.130 33.333 4.65 0.00 34.21 2.17
1034 1037 9.613428 TCGTAGATCCATTGTAATCTTGAAATT 57.387 29.630 4.65 0.00 34.21 1.82
1035 1038 9.613428 TTCGTAGATCCATTGTAATCTTGAAAT 57.387 29.630 4.65 0.00 35.04 2.17
1036 1039 9.443323 TTTCGTAGATCCATTGTAATCTTGAAA 57.557 29.630 14.34 14.34 35.31 2.69
1037 1040 9.443323 TTTTCGTAGATCCATTGTAATCTTGAA 57.557 29.630 4.65 6.75 35.04 2.69
1038 1041 9.098355 CTTTTCGTAGATCCATTGTAATCTTGA 57.902 33.333 4.65 2.39 35.04 3.02
1039 1042 9.098355 TCTTTTCGTAGATCCATTGTAATCTTG 57.902 33.333 4.65 0.61 35.04 3.02
1040 1043 9.838339 ATCTTTTCGTAGATCCATTGTAATCTT 57.162 29.630 4.65 0.00 35.04 2.40
1041 1044 9.482627 GATCTTTTCGTAGATCCATTGTAATCT 57.517 33.333 11.38 4.72 43.04 2.40
1042 1045 8.428536 CGATCTTTTCGTAGATCCATTGTAATC 58.571 37.037 14.66 0.00 45.00 1.75
1043 1046 8.299262 CGATCTTTTCGTAGATCCATTGTAAT 57.701 34.615 14.66 0.00 45.00 1.89
1044 1047 7.694388 CGATCTTTTCGTAGATCCATTGTAA 57.306 36.000 14.66 0.00 45.00 2.41
1079 1082 9.661563 TGTCGACTTTGTATATTCCATTTTAGT 57.338 29.630 17.92 0.00 0.00 2.24
1080 1083 9.916397 GTGTCGACTTTGTATATTCCATTTTAG 57.084 33.333 17.92 0.00 0.00 1.85
1081 1084 9.661563 AGTGTCGACTTTGTATATTCCATTTTA 57.338 29.630 17.92 0.00 0.00 1.52
1082 1085 8.561738 AGTGTCGACTTTGTATATTCCATTTT 57.438 30.769 17.92 0.00 0.00 1.82
1083 1086 9.661563 TTAGTGTCGACTTTGTATATTCCATTT 57.338 29.630 17.92 0.00 33.21 2.32
1084 1087 9.832445 ATTAGTGTCGACTTTGTATATTCCATT 57.168 29.630 17.92 0.00 33.21 3.16
1085 1088 9.261180 CATTAGTGTCGACTTTGTATATTCCAT 57.739 33.333 17.92 0.00 33.21 3.41
1086 1089 8.471609 TCATTAGTGTCGACTTTGTATATTCCA 58.528 33.333 17.92 0.00 33.21 3.53
1087 1090 8.867112 TCATTAGTGTCGACTTTGTATATTCC 57.133 34.615 17.92 0.00 33.21 3.01
1116 1119 9.243105 ACAGTTTGTGTAGCCATAAATTCTATT 57.757 29.630 0.00 0.00 37.75 1.73
1117 1120 8.807948 ACAGTTTGTGTAGCCATAAATTCTAT 57.192 30.769 0.00 0.00 37.75 1.98
1118 1121 8.511321 CAACAGTTTGTGTAGCCATAAATTCTA 58.489 33.333 0.00 0.00 39.03 2.10
1119 1122 7.230510 TCAACAGTTTGTGTAGCCATAAATTCT 59.769 33.333 0.00 0.00 39.03 2.40
1120 1123 7.367285 TCAACAGTTTGTGTAGCCATAAATTC 58.633 34.615 0.00 0.00 39.03 2.17
1121 1124 7.283625 TCAACAGTTTGTGTAGCCATAAATT 57.716 32.000 0.00 0.00 39.03 1.82
1122 1125 6.892658 TCAACAGTTTGTGTAGCCATAAAT 57.107 33.333 0.00 0.00 39.03 1.40
1123 1126 6.544197 TCTTCAACAGTTTGTGTAGCCATAAA 59.456 34.615 0.00 0.00 39.03 1.40
1124 1127 6.058833 TCTTCAACAGTTTGTGTAGCCATAA 58.941 36.000 0.00 0.00 39.03 1.90
1125 1128 5.616270 TCTTCAACAGTTTGTGTAGCCATA 58.384 37.500 0.00 0.00 39.03 2.74
1126 1129 4.460263 TCTTCAACAGTTTGTGTAGCCAT 58.540 39.130 0.00 0.00 39.03 4.40
1127 1130 3.879998 TCTTCAACAGTTTGTGTAGCCA 58.120 40.909 0.00 0.00 39.03 4.75
1128 1131 5.701290 ACTATCTTCAACAGTTTGTGTAGCC 59.299 40.000 0.00 0.00 39.03 3.93
1129 1132 6.787085 ACTATCTTCAACAGTTTGTGTAGC 57.213 37.500 0.00 0.00 39.03 3.58
1130 1133 8.594881 AGAACTATCTTCAACAGTTTGTGTAG 57.405 34.615 0.00 0.00 32.17 2.74
1132 1135 8.958119 TTAGAACTATCTTCAACAGTTTGTGT 57.042 30.769 0.00 0.00 37.86 3.72
1133 1136 9.651718 GTTTAGAACTATCTTCAACAGTTTGTG 57.348 33.333 0.00 0.00 37.10 3.33
1134 1137 8.837389 GGTTTAGAACTATCTTCAACAGTTTGT 58.163 33.333 0.00 0.00 37.10 2.83
1135 1138 9.057089 AGGTTTAGAACTATCTTCAACAGTTTG 57.943 33.333 0.00 0.00 37.10 2.93
1137 1140 9.930693 CTAGGTTTAGAACTATCTTCAACAGTT 57.069 33.333 0.00 0.00 37.10 3.16
1138 1141 8.532819 CCTAGGTTTAGAACTATCTTCAACAGT 58.467 37.037 0.00 0.00 37.10 3.55
1139 1142 7.492994 GCCTAGGTTTAGAACTATCTTCAACAG 59.507 40.741 11.31 0.00 37.10 3.16
1140 1143 7.328737 GCCTAGGTTTAGAACTATCTTCAACA 58.671 38.462 11.31 0.00 37.10 3.33
1141 1144 6.762187 GGCCTAGGTTTAGAACTATCTTCAAC 59.238 42.308 11.31 0.00 37.10 3.18
1142 1145 6.442564 TGGCCTAGGTTTAGAACTATCTTCAA 59.557 38.462 11.31 0.00 37.10 2.69
1143 1146 5.962031 TGGCCTAGGTTTAGAACTATCTTCA 59.038 40.000 11.31 0.00 37.10 3.02
1144 1147 6.481434 TGGCCTAGGTTTAGAACTATCTTC 57.519 41.667 11.31 0.00 37.10 2.87
1145 1148 6.886178 TTGGCCTAGGTTTAGAACTATCTT 57.114 37.500 11.31 0.00 37.10 2.40
1146 1149 6.886178 TTTGGCCTAGGTTTAGAACTATCT 57.114 37.500 11.31 0.00 39.82 1.98
1147 1150 6.036844 CGTTTTGGCCTAGGTTTAGAACTATC 59.963 42.308 11.31 0.00 0.00 2.08
1148 1151 5.878669 CGTTTTGGCCTAGGTTTAGAACTAT 59.121 40.000 11.31 0.00 0.00 2.12
1149 1152 5.011943 TCGTTTTGGCCTAGGTTTAGAACTA 59.988 40.000 11.31 0.00 0.00 2.24
1150 1153 4.070009 CGTTTTGGCCTAGGTTTAGAACT 58.930 43.478 11.31 0.00 0.00 3.01
1151 1154 4.067192 TCGTTTTGGCCTAGGTTTAGAAC 58.933 43.478 11.31 8.54 0.00 3.01
1152 1155 4.354893 TCGTTTTGGCCTAGGTTTAGAA 57.645 40.909 11.31 0.00 0.00 2.10
1153 1156 4.067192 GTTCGTTTTGGCCTAGGTTTAGA 58.933 43.478 11.31 0.00 0.00 2.10
1154 1157 4.070009 AGTTCGTTTTGGCCTAGGTTTAG 58.930 43.478 11.31 0.00 0.00 1.85
1155 1158 3.816523 CAGTTCGTTTTGGCCTAGGTTTA 59.183 43.478 11.31 0.00 0.00 2.01
1156 1159 2.621526 CAGTTCGTTTTGGCCTAGGTTT 59.378 45.455 11.31 0.00 0.00 3.27
1157 1160 2.227194 CAGTTCGTTTTGGCCTAGGTT 58.773 47.619 11.31 0.00 0.00 3.50
1158 1161 1.544759 CCAGTTCGTTTTGGCCTAGGT 60.545 52.381 11.31 0.00 0.00 3.08
1159 1162 1.165270 CCAGTTCGTTTTGGCCTAGG 58.835 55.000 3.67 3.67 0.00 3.02
1160 1163 1.535462 CACCAGTTCGTTTTGGCCTAG 59.465 52.381 3.32 0.00 38.03 3.02
1161 1164 1.600023 CACCAGTTCGTTTTGGCCTA 58.400 50.000 3.32 0.00 38.03 3.93
1162 1165 1.734388 GCACCAGTTCGTTTTGGCCT 61.734 55.000 3.32 0.00 38.03 5.19
1163 1166 1.299850 GCACCAGTTCGTTTTGGCC 60.300 57.895 0.00 0.00 38.03 5.36
1164 1167 0.594796 CTGCACCAGTTCGTTTTGGC 60.595 55.000 0.00 0.00 38.03 4.52
1165 1168 0.030638 CCTGCACCAGTTCGTTTTGG 59.969 55.000 0.00 1.31 40.38 3.28
1166 1169 0.738389 ACCTGCACCAGTTCGTTTTG 59.262 50.000 0.00 0.00 0.00 2.44
1167 1170 2.218603 CTACCTGCACCAGTTCGTTTT 58.781 47.619 0.00 0.00 0.00 2.43
1168 1171 1.140252 ACTACCTGCACCAGTTCGTTT 59.860 47.619 0.00 0.00 0.00 3.60
1169 1172 0.756903 ACTACCTGCACCAGTTCGTT 59.243 50.000 0.00 0.00 0.00 3.85
1170 1173 0.756903 AACTACCTGCACCAGTTCGT 59.243 50.000 0.00 0.00 0.00 3.85
1171 1174 1.878953 AAACTACCTGCACCAGTTCG 58.121 50.000 3.92 0.00 31.43 3.95
1172 1175 3.746492 CAGTAAACTACCTGCACCAGTTC 59.254 47.826 3.92 0.00 31.43 3.01
1173 1176 3.389983 TCAGTAAACTACCTGCACCAGTT 59.610 43.478 0.00 0.00 34.03 3.16
1174 1177 2.969950 TCAGTAAACTACCTGCACCAGT 59.030 45.455 0.00 0.00 0.00 4.00
1175 1178 3.678056 TCAGTAAACTACCTGCACCAG 57.322 47.619 0.00 0.00 0.00 4.00
1176 1179 4.131596 GTTTCAGTAAACTACCTGCACCA 58.868 43.478 0.00 0.00 41.52 4.17
1177 1180 3.501062 GGTTTCAGTAAACTACCTGCACC 59.499 47.826 0.00 0.00 43.76 5.01
1178 1181 3.185797 CGGTTTCAGTAAACTACCTGCAC 59.814 47.826 0.00 0.00 43.76 4.57
1179 1182 3.181463 ACGGTTTCAGTAAACTACCTGCA 60.181 43.478 0.00 0.00 43.76 4.41
1180 1183 3.396560 ACGGTTTCAGTAAACTACCTGC 58.603 45.455 0.00 0.00 43.76 4.85
1181 1184 5.051816 TCAACGGTTTCAGTAAACTACCTG 58.948 41.667 0.00 0.00 43.76 4.00
1182 1185 5.280654 TCAACGGTTTCAGTAAACTACCT 57.719 39.130 0.00 0.00 43.76 3.08
1183 1186 5.989551 TTCAACGGTTTCAGTAAACTACC 57.010 39.130 0.00 0.00 43.76 3.18
1184 1187 6.788930 CGAATTCAACGGTTTCAGTAAACTAC 59.211 38.462 6.22 0.00 43.76 2.73
1185 1188 6.073657 CCGAATTCAACGGTTTCAGTAAACTA 60.074 38.462 6.22 0.00 43.76 2.24
1186 1189 5.277634 CCGAATTCAACGGTTTCAGTAAACT 60.278 40.000 6.22 0.00 43.76 2.66
1187 1190 4.907582 CCGAATTCAACGGTTTCAGTAAAC 59.092 41.667 6.22 0.00 44.57 2.01
1188 1191 5.098218 CCGAATTCAACGGTTTCAGTAAA 57.902 39.130 6.22 0.00 44.57 2.01
1189 1192 4.735662 CCGAATTCAACGGTTTCAGTAA 57.264 40.909 6.22 0.00 44.57 2.24
1199 1202 5.065988 ACTTTCCCATATTCCGAATTCAACG 59.934 40.000 6.22 0.00 0.00 4.10
1200 1203 6.451064 ACTTTCCCATATTCCGAATTCAAC 57.549 37.500 6.22 0.00 0.00 3.18
1201 1204 5.295787 CGACTTTCCCATATTCCGAATTCAA 59.704 40.000 6.22 0.00 0.00 2.69
1202 1205 4.814234 CGACTTTCCCATATTCCGAATTCA 59.186 41.667 6.22 0.00 0.00 2.57
1203 1206 4.319549 GCGACTTTCCCATATTCCGAATTC 60.320 45.833 0.00 0.00 0.00 2.17
1204 1207 3.564225 GCGACTTTCCCATATTCCGAATT 59.436 43.478 0.00 0.00 0.00 2.17
1205 1208 3.139077 GCGACTTTCCCATATTCCGAAT 58.861 45.455 0.00 0.00 0.00 3.34
1206 1209 2.557317 GCGACTTTCCCATATTCCGAA 58.443 47.619 0.00 0.00 0.00 4.30
1207 1210 1.202604 GGCGACTTTCCCATATTCCGA 60.203 52.381 0.00 0.00 0.00 4.55
1208 1211 1.226746 GGCGACTTTCCCATATTCCG 58.773 55.000 0.00 0.00 0.00 4.30
1209 1212 1.605753 GGGCGACTTTCCCATATTCC 58.394 55.000 0.00 0.00 43.37 3.01
1210 1213 1.605753 GGGGCGACTTTCCCATATTC 58.394 55.000 0.06 0.00 45.73 1.75
1211 1214 0.179029 CGGGGCGACTTTCCCATATT 60.179 55.000 0.06 0.00 45.73 1.28
1212 1215 1.450211 CGGGGCGACTTTCCCATAT 59.550 57.895 0.06 0.00 45.73 1.78
1213 1216 2.737881 CCGGGGCGACTTTCCCATA 61.738 63.158 0.00 0.00 45.73 2.74
1214 1217 4.109675 CCGGGGCGACTTTCCCAT 62.110 66.667 0.00 0.00 45.73 4.00
1217 1220 4.340246 AACCCGGGGCGACTTTCC 62.340 66.667 27.92 0.00 0.00 3.13
1218 1221 3.053896 CAACCCGGGGCGACTTTC 61.054 66.667 27.92 0.00 0.00 2.62
1219 1222 4.653888 CCAACCCGGGGCGACTTT 62.654 66.667 27.92 5.54 0.00 2.66
1228 1231 2.285144 AGTAGTCCCCCAACCCGG 60.285 66.667 0.00 0.00 0.00 5.73
1229 1232 2.364780 GGAGTAGTCCCCCAACCCG 61.365 68.421 5.14 0.00 36.76 5.28
1230 1233 0.549413 AAGGAGTAGTCCCCCAACCC 60.549 60.000 13.30 0.00 45.26 4.11
1231 1234 1.369403 AAAGGAGTAGTCCCCCAACC 58.631 55.000 13.30 0.00 45.26 3.77
1232 1235 4.524053 CATAAAAGGAGTAGTCCCCCAAC 58.476 47.826 13.30 0.00 45.26 3.77
1233 1236 3.526019 CCATAAAAGGAGTAGTCCCCCAA 59.474 47.826 13.30 0.00 45.26 4.12
1234 1237 3.120108 CCATAAAAGGAGTAGTCCCCCA 58.880 50.000 13.30 0.00 45.26 4.96
1235 1238 2.442126 CCCATAAAAGGAGTAGTCCCCC 59.558 54.545 13.30 0.00 45.26 5.40
1236 1239 2.442126 CCCCATAAAAGGAGTAGTCCCC 59.558 54.545 13.30 0.00 45.26 4.81
1237 1240 3.390819 TCCCCATAAAAGGAGTAGTCCC 58.609 50.000 13.30 0.00 45.26 4.46
1238 1241 4.262506 CGATCCCCATAAAAGGAGTAGTCC 60.263 50.000 8.73 8.73 44.33 3.85
1239 1242 4.799917 GCGATCCCCATAAAAGGAGTAGTC 60.800 50.000 0.00 0.00 35.08 2.59
1240 1243 3.071167 GCGATCCCCATAAAAGGAGTAGT 59.929 47.826 0.00 0.00 35.08 2.73
1241 1244 3.071023 TGCGATCCCCATAAAAGGAGTAG 59.929 47.826 0.00 0.00 35.08 2.57
1242 1245 3.042682 TGCGATCCCCATAAAAGGAGTA 58.957 45.455 0.00 0.00 35.08 2.59
1243 1246 1.843851 TGCGATCCCCATAAAAGGAGT 59.156 47.619 0.00 0.00 35.08 3.85
1244 1247 2.638480 TGCGATCCCCATAAAAGGAG 57.362 50.000 0.00 0.00 35.08 3.69
1245 1248 3.221771 CATTGCGATCCCCATAAAAGGA 58.778 45.455 0.00 0.00 36.36 3.36
1246 1249 2.297033 CCATTGCGATCCCCATAAAAGG 59.703 50.000 0.00 0.00 0.00 3.11
1247 1250 2.288395 GCCATTGCGATCCCCATAAAAG 60.288 50.000 0.00 0.00 0.00 2.27
1248 1251 1.686052 GCCATTGCGATCCCCATAAAA 59.314 47.619 0.00 0.00 0.00 1.52
1249 1252 1.133513 AGCCATTGCGATCCCCATAAA 60.134 47.619 0.00 0.00 44.33 1.40
1250 1253 0.478072 AGCCATTGCGATCCCCATAA 59.522 50.000 0.00 0.00 44.33 1.90
1251 1254 0.478072 AAGCCATTGCGATCCCCATA 59.522 50.000 0.00 0.00 44.33 2.74
1252 1255 0.397535 AAAGCCATTGCGATCCCCAT 60.398 50.000 0.00 0.00 44.33 4.00
1253 1256 0.257328 TAAAGCCATTGCGATCCCCA 59.743 50.000 0.00 0.00 44.33 4.96
1254 1257 1.620822 ATAAAGCCATTGCGATCCCC 58.379 50.000 0.00 0.00 44.33 4.81
1255 1258 2.350772 CGAATAAAGCCATTGCGATCCC 60.351 50.000 0.00 0.00 44.33 3.85
1256 1259 2.918131 GCGAATAAAGCCATTGCGATCC 60.918 50.000 0.00 0.00 44.33 3.36
1257 1260 2.031682 AGCGAATAAAGCCATTGCGATC 60.032 45.455 0.00 0.00 44.33 3.69
1258 1261 1.949525 AGCGAATAAAGCCATTGCGAT 59.050 42.857 0.00 0.00 44.33 4.58
1259 1262 1.378531 AGCGAATAAAGCCATTGCGA 58.621 45.000 0.00 0.00 44.33 5.10
1260 1263 3.542712 ATAGCGAATAAAGCCATTGCG 57.457 42.857 0.00 0.00 44.33 4.85
1261 1264 6.030228 GGAATATAGCGAATAAAGCCATTGC 58.970 40.000 0.00 0.00 34.64 3.56
1262 1265 7.383102 AGGAATATAGCGAATAAAGCCATTG 57.617 36.000 0.00 0.00 34.64 2.82
1263 1266 9.331282 GATAGGAATATAGCGAATAAAGCCATT 57.669 33.333 0.00 0.00 34.64 3.16
1264 1267 8.709308 AGATAGGAATATAGCGAATAAAGCCAT 58.291 33.333 0.00 0.00 34.64 4.40
1265 1268 8.079211 AGATAGGAATATAGCGAATAAAGCCA 57.921 34.615 0.00 0.00 34.64 4.75
1299 1302 9.893305 CAGTAAACGGAAGAATTGTAAATTTCT 57.107 29.630 0.00 0.00 33.69 2.52
1300 1303 9.124807 CCAGTAAACGGAAGAATTGTAAATTTC 57.875 33.333 0.00 0.00 0.00 2.17
1301 1304 8.852135 TCCAGTAAACGGAAGAATTGTAAATTT 58.148 29.630 0.00 0.00 0.00 1.82
1302 1305 8.294577 GTCCAGTAAACGGAAGAATTGTAAATT 58.705 33.333 0.00 0.00 33.29 1.82
1303 1306 7.360607 CGTCCAGTAAACGGAAGAATTGTAAAT 60.361 37.037 0.00 0.00 34.31 1.40
1304 1307 6.073657 CGTCCAGTAAACGGAAGAATTGTAAA 60.074 38.462 0.00 0.00 34.31 2.01
1305 1308 5.406175 CGTCCAGTAAACGGAAGAATTGTAA 59.594 40.000 0.00 0.00 34.31 2.41
1306 1309 4.925054 CGTCCAGTAAACGGAAGAATTGTA 59.075 41.667 0.00 0.00 34.31 2.41
1307 1310 3.744426 CGTCCAGTAAACGGAAGAATTGT 59.256 43.478 0.00 0.00 34.31 2.71
1308 1311 4.322101 CGTCCAGTAAACGGAAGAATTG 57.678 45.455 0.00 0.00 34.31 2.32
1317 1320 5.049543 TGGTTAAAATTCCGTCCAGTAAACG 60.050 40.000 0.00 0.00 39.78 3.60
1318 1321 6.316440 TGGTTAAAATTCCGTCCAGTAAAC 57.684 37.500 0.00 0.00 0.00 2.01
1319 1322 6.956202 TTGGTTAAAATTCCGTCCAGTAAA 57.044 33.333 0.00 0.00 0.00 2.01
1320 1323 7.527568 AATTGGTTAAAATTCCGTCCAGTAA 57.472 32.000 0.00 0.00 0.00 2.24
1321 1324 7.337436 CCTAATTGGTTAAAATTCCGTCCAGTA 59.663 37.037 0.00 0.00 32.16 2.74
1322 1325 6.152154 CCTAATTGGTTAAAATTCCGTCCAGT 59.848 38.462 0.00 0.00 32.16 4.00
1323 1326 6.560711 CCTAATTGGTTAAAATTCCGTCCAG 58.439 40.000 0.00 0.00 32.16 3.86
1324 1327 6.518208 CCTAATTGGTTAAAATTCCGTCCA 57.482 37.500 0.00 0.00 32.16 4.02
1339 1342 9.939802 AGTTGTAGTTAGTAGAAACCTAATTGG 57.060 33.333 0.00 0.00 42.93 3.16
1345 1348 8.946797 TTCCTAGTTGTAGTTAGTAGAAACCT 57.053 34.615 0.00 0.00 0.00 3.50
1346 1349 8.801299 ACTTCCTAGTTGTAGTTAGTAGAAACC 58.199 37.037 0.00 0.00 0.00 3.27
1347 1350 9.838975 GACTTCCTAGTTGTAGTTAGTAGAAAC 57.161 37.037 0.00 0.00 33.84 2.78
1348 1351 9.578576 TGACTTCCTAGTTGTAGTTAGTAGAAA 57.421 33.333 0.00 0.00 33.84 2.52
1349 1352 9.228949 CTGACTTCCTAGTTGTAGTTAGTAGAA 57.771 37.037 0.00 0.00 33.84 2.10
1350 1353 8.600668 TCTGACTTCCTAGTTGTAGTTAGTAGA 58.399 37.037 0.00 0.00 33.84 2.59
1351 1354 8.789825 TCTGACTTCCTAGTTGTAGTTAGTAG 57.210 38.462 0.00 0.00 33.84 2.57
1352 1355 8.381636 ACTCTGACTTCCTAGTTGTAGTTAGTA 58.618 37.037 0.00 0.00 33.84 1.82
1353 1356 7.232910 ACTCTGACTTCCTAGTTGTAGTTAGT 58.767 38.462 0.00 0.00 33.84 2.24
1354 1357 7.690952 ACTCTGACTTCCTAGTTGTAGTTAG 57.309 40.000 0.00 0.00 33.84 2.34
1355 1358 8.474710 AAACTCTGACTTCCTAGTTGTAGTTA 57.525 34.615 0.00 0.00 33.84 2.24
1356 1359 6.980416 AACTCTGACTTCCTAGTTGTAGTT 57.020 37.500 0.00 0.00 33.84 2.24
1357 1360 6.980416 AAACTCTGACTTCCTAGTTGTAGT 57.020 37.500 0.00 0.00 33.84 2.73
1358 1361 7.385478 GGAAAAACTCTGACTTCCTAGTTGTAG 59.615 40.741 0.00 0.00 35.46 2.74
1359 1362 7.147620 TGGAAAAACTCTGACTTCCTAGTTGTA 60.148 37.037 0.00 0.00 38.53 2.41
1360 1363 6.056236 GGAAAAACTCTGACTTCCTAGTTGT 58.944 40.000 0.00 0.00 35.46 3.32
1361 1364 6.055588 TGGAAAAACTCTGACTTCCTAGTTG 58.944 40.000 0.00 0.00 38.53 3.16
1362 1365 6.248569 TGGAAAAACTCTGACTTCCTAGTT 57.751 37.500 0.00 0.00 38.53 2.24
1363 1366 5.888982 TGGAAAAACTCTGACTTCCTAGT 57.111 39.130 0.00 0.00 38.53 2.57
1364 1367 5.877564 GGATGGAAAAACTCTGACTTCCTAG 59.122 44.000 0.00 0.00 38.53 3.02
1365 1368 5.309543 TGGATGGAAAAACTCTGACTTCCTA 59.690 40.000 0.00 0.00 38.53 2.94
1366 1369 4.104738 TGGATGGAAAAACTCTGACTTCCT 59.895 41.667 0.00 0.00 38.53 3.36
1367 1370 4.398319 TGGATGGAAAAACTCTGACTTCC 58.602 43.478 0.00 0.00 38.26 3.46
1368 1371 6.391227 TTTGGATGGAAAAACTCTGACTTC 57.609 37.500 0.00 0.00 0.00 3.01
1369 1372 6.790232 TTTTGGATGGAAAAACTCTGACTT 57.210 33.333 0.00 0.00 0.00 3.01
1370 1373 6.790232 TTTTTGGATGGAAAAACTCTGACT 57.210 33.333 0.00 0.00 31.39 3.41
1418 1421 8.836413 CGGAAAAACTGCCATAATATCTAGAAA 58.164 33.333 0.00 0.00 0.00 2.52
1419 1422 7.990886 ACGGAAAAACTGCCATAATATCTAGAA 59.009 33.333 0.00 0.00 0.00 2.10
1420 1423 7.506114 ACGGAAAAACTGCCATAATATCTAGA 58.494 34.615 0.00 0.00 0.00 2.43
1421 1424 7.730364 ACGGAAAAACTGCCATAATATCTAG 57.270 36.000 0.00 0.00 0.00 2.43
1422 1425 9.787435 ATAACGGAAAAACTGCCATAATATCTA 57.213 29.630 0.00 0.00 0.00 1.98
1423 1426 8.691661 ATAACGGAAAAACTGCCATAATATCT 57.308 30.769 0.00 0.00 0.00 1.98
1424 1427 9.821662 GTATAACGGAAAAACTGCCATAATATC 57.178 33.333 0.00 0.00 0.00 1.63
1425 1428 9.569122 AGTATAACGGAAAAACTGCCATAATAT 57.431 29.630 0.00 0.00 0.00 1.28
1426 1429 8.967664 AGTATAACGGAAAAACTGCCATAATA 57.032 30.769 0.00 0.00 0.00 0.98
1427 1430 7.875327 AGTATAACGGAAAAACTGCCATAAT 57.125 32.000 0.00 0.00 0.00 1.28
1428 1431 8.042515 ACTAGTATAACGGAAAAACTGCCATAA 58.957 33.333 0.00 0.00 0.00 1.90
1429 1432 7.558604 ACTAGTATAACGGAAAAACTGCCATA 58.441 34.615 0.00 0.00 0.00 2.74
1430 1433 6.412214 ACTAGTATAACGGAAAAACTGCCAT 58.588 36.000 0.00 0.00 0.00 4.40
1431 1434 5.797051 ACTAGTATAACGGAAAAACTGCCA 58.203 37.500 0.00 0.00 0.00 4.92
1432 1435 6.369615 TGAACTAGTATAACGGAAAAACTGCC 59.630 38.462 0.00 0.00 0.00 4.85
1433 1436 7.355332 TGAACTAGTATAACGGAAAAACTGC 57.645 36.000 0.00 0.00 0.00 4.40
1438 1441 9.880157 AGCTATTTGAACTAGTATAACGGAAAA 57.120 29.630 0.00 0.00 0.00 2.29
1439 1442 9.880157 AAGCTATTTGAACTAGTATAACGGAAA 57.120 29.630 0.00 0.00 0.00 3.13
1440 1443 9.525409 GAAGCTATTTGAACTAGTATAACGGAA 57.475 33.333 0.00 0.00 0.00 4.30
1441 1444 8.910944 AGAAGCTATTTGAACTAGTATAACGGA 58.089 33.333 0.00 0.00 0.00 4.69
1446 1449 9.650714 TGGGTAGAAGCTATTTGAACTAGTATA 57.349 33.333 0.00 0.00 0.00 1.47
1447 1450 8.548880 TGGGTAGAAGCTATTTGAACTAGTAT 57.451 34.615 0.00 0.00 0.00 2.12
1456 1459 8.548721 CGTTACTAAATGGGTAGAAGCTATTTG 58.451 37.037 9.73 4.32 37.36 2.32
1457 1460 8.262933 ACGTTACTAAATGGGTAGAAGCTATTT 58.737 33.333 5.88 5.88 39.50 1.40
1512 1515 2.985896 TCGTTTGCTTCCTCTAATGGG 58.014 47.619 0.00 0.00 0.00 4.00
1523 1526 6.207417 CCTTGATTATATGGGATCGTTTGCTT 59.793 38.462 0.00 0.00 0.00 3.91
1526 1529 6.237901 TCCCTTGATTATATGGGATCGTTTG 58.762 40.000 0.00 0.00 43.20 2.93
1542 1545 4.806640 AAAAATGCGATTGTCCCTTGAT 57.193 36.364 0.00 0.00 0.00 2.57
1555 1558 3.086282 ACCAACTAGGGGTAAAAATGCG 58.914 45.455 6.57 0.00 43.89 4.73
1664 1667 7.171678 TGAATTTTCAAAGTTTTGGTCAAACGT 59.828 29.630 4.89 0.00 41.02 3.99
1770 1777 0.037046 GGTGCTTTTGCCCTGAATGG 60.037 55.000 0.00 0.00 46.87 3.16
1871 1879 6.717289 ACCTCACCTACATTTGCAAGTAATA 58.283 36.000 0.00 0.00 0.00 0.98
1877 1885 4.892934 AGAAAACCTCACCTACATTTGCAA 59.107 37.500 0.00 0.00 0.00 4.08
1971 1979 8.994170 TGTTATGAATGTTCATACGACTTTGAA 58.006 29.630 13.48 0.00 46.58 2.69
2037 2045 6.707440 TGTAGGTGATGTTTTGTGAACATT 57.293 33.333 5.93 0.00 40.62 2.71
2045 2053 9.689976 TTACATGAAAATGTAGGTGATGTTTTG 57.310 29.630 0.00 0.00 38.16 2.44
2144 2155 4.027437 AGGACAAAAGCACCCTTTAAACA 58.973 39.130 0.00 0.00 40.30 2.83
2220 2231 9.791820 TCATATGAACTCACAAAATGCAAATAG 57.208 29.630 1.98 0.00 0.00 1.73
2272 2284 0.394488 TGCCCTTTGACCGTTTGACA 60.394 50.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.