Multiple sequence alignment - TraesCS7A01G094900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G094900 chr7A 100.000 3237 0 0 1 3237 57887674 57884438 0.000000e+00 5978.0
1 TraesCS7A01G094900 chr7A 85.639 571 58 13 170 716 672738756 672739326 2.170000e-161 579.0
2 TraesCS7A01G094900 chr7A 99.180 122 1 0 2240 2361 47788999 47789120 1.510000e-53 220.0
3 TraesCS7A01G094900 chr7A 93.007 143 10 0 1 143 672738615 672738757 3.270000e-50 209.0
4 TraesCS7A01G094900 chr7A 81.935 155 21 4 2583 2733 57746345 57746496 1.220000e-24 124.0
5 TraesCS7A01G094900 chr7D 91.234 1483 74 25 791 2239 54371181 54369721 0.000000e+00 1967.0
6 TraesCS7A01G094900 chr7D 91.653 599 43 7 2581 3179 54369731 54369140 0.000000e+00 822.0
7 TraesCS7A01G094900 chr7D 95.111 225 10 1 2357 2581 606031399 606031176 1.430000e-93 353.0
8 TraesCS7A01G094900 chr7D 77.535 503 100 10 1049 1540 54246227 54246727 1.140000e-74 291.0
9 TraesCS7A01G094900 chr7D 80.921 152 24 4 2583 2733 54259526 54259673 7.340000e-22 115.0
10 TraesCS7A01G094900 chr7D 93.548 62 4 0 3176 3237 54368364 54368303 3.440000e-15 93.5
11 TraesCS7A01G094900 chr4A 87.920 1457 102 36 826 2239 669916075 669917500 0.000000e+00 1648.0
12 TraesCS7A01G094900 chr4A 96.117 206 8 0 2583 2788 669917492 669917697 1.440000e-88 337.0
13 TraesCS7A01G094900 chr4A 76.737 619 112 24 1027 1623 669829329 669829937 1.870000e-82 316.0
14 TraesCS7A01G094900 chr4A 86.250 80 9 2 2583 2661 669836592 669836670 5.750000e-13 86.1
15 TraesCS7A01G094900 chr6B 96.234 717 26 1 1 716 32454163 32454879 0.000000e+00 1173.0
16 TraesCS7A01G094900 chr6B 85.035 568 62 15 170 716 11835848 11835283 1.010000e-154 556.0
17 TraesCS7A01G094900 chr2A 95.670 716 21 1 1 716 713228326 713227621 0.000000e+00 1142.0
18 TraesCS7A01G094900 chr2D 90.098 717 49 6 1 716 589255075 589255770 0.000000e+00 911.0
19 TraesCS7A01G094900 chr2D 95.575 226 8 2 2357 2582 586805217 586804994 8.540000e-96 361.0
20 TraesCS7A01G094900 chr2D 94.714 227 12 0 2361 2587 606163308 606163082 1.430000e-93 353.0
21 TraesCS7A01G094900 chr2D 81.250 368 44 17 350 716 635943870 635943527 1.140000e-69 274.0
22 TraesCS7A01G094900 chr2D 96.899 129 2 2 2240 2366 57360963 57360835 7.030000e-52 215.0
23 TraesCS7A01G094900 chr1B 81.579 760 71 28 17 744 31320024 31319302 6.060000e-157 564.0
24 TraesCS7A01G094900 chr1B 95.495 222 10 0 2361 2582 592546735 592546956 3.970000e-94 355.0
25 TraesCS7A01G094900 chr1B 99.180 122 1 0 2240 2361 7915994 7916115 1.510000e-53 220.0
26 TraesCS7A01G094900 chr1B 85.345 116 15 2 3 117 540332410 540332296 5.670000e-23 119.0
27 TraesCS7A01G094900 chr4D 94.236 347 18 2 2237 2581 497187082 497187428 2.210000e-146 529.0
28 TraesCS7A01G094900 chr1D 86.032 494 48 13 243 716 19559014 19558522 8.010000e-141 510.0
29 TraesCS7A01G094900 chr7B 95.928 221 9 0 2361 2581 624247246 624247466 3.070000e-95 359.0
30 TraesCS7A01G094900 chr7B 99.180 122 1 0 2240 2361 624247002 624247123 1.510000e-53 220.0
31 TraesCS7A01G094900 chr3D 94.421 233 10 3 2364 2594 520445815 520445584 3.970000e-94 355.0
32 TraesCS7A01G094900 chr1A 95.133 226 10 1 2361 2586 583298720 583298496 3.970000e-94 355.0
33 TraesCS7A01G094900 chr1A 96.923 130 2 2 2239 2366 71709581 71709452 1.960000e-52 217.0
34 TraesCS7A01G094900 chr3A 95.495 222 9 1 2361 2582 698298628 698298408 1.430000e-93 353.0
35 TraesCS7A01G094900 chrUn 92.683 205 15 0 2583 2787 36539409 36539613 2.440000e-76 296.0
36 TraesCS7A01G094900 chrUn 86.385 213 26 2 1270 1480 36532062 36532273 2.510000e-56 230.0
37 TraesCS7A01G094900 chrUn 96.899 129 2 2 2240 2366 235766730 235766602 7.030000e-52 215.0
38 TraesCS7A01G094900 chr5A 99.167 120 1 0 2242 2361 554876305 554876424 1.960000e-52 217.0
39 TraesCS7A01G094900 chr6A 96.923 130 1 3 2239 2366 582249553 582249425 7.030000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G094900 chr7A 57884438 57887674 3236 True 5978.000000 5978 100.0000 1 3237 1 chr7A.!!$R1 3236
1 TraesCS7A01G094900 chr7A 672738615 672739326 711 False 394.000000 579 89.3230 1 716 2 chr7A.!!$F3 715
2 TraesCS7A01G094900 chr7D 54368303 54371181 2878 True 960.833333 1967 92.1450 791 3237 3 chr7D.!!$R2 2446
3 TraesCS7A01G094900 chr7D 54246227 54246727 500 False 291.000000 291 77.5350 1049 1540 1 chr7D.!!$F1 491
4 TraesCS7A01G094900 chr4A 669916075 669917697 1622 False 992.500000 1648 92.0185 826 2788 2 chr4A.!!$F3 1962
5 TraesCS7A01G094900 chr4A 669829329 669829937 608 False 316.000000 316 76.7370 1027 1623 1 chr4A.!!$F1 596
6 TraesCS7A01G094900 chr6B 32454163 32454879 716 False 1173.000000 1173 96.2340 1 716 1 chr6B.!!$F1 715
7 TraesCS7A01G094900 chr6B 11835283 11835848 565 True 556.000000 556 85.0350 170 716 1 chr6B.!!$R1 546
8 TraesCS7A01G094900 chr2A 713227621 713228326 705 True 1142.000000 1142 95.6700 1 716 1 chr2A.!!$R1 715
9 TraesCS7A01G094900 chr2D 589255075 589255770 695 False 911.000000 911 90.0980 1 716 1 chr2D.!!$F1 715
10 TraesCS7A01G094900 chr1B 31319302 31320024 722 True 564.000000 564 81.5790 17 744 1 chr1B.!!$R1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
769 851 0.033504 AGCTGACGGACGTGATTTGT 59.966 50.0 0.53 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 2591 0.10212 TTCAAACCTTTGCAGCGTGG 59.898 50.0 0.0 0.0 38.05 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 71 4.546829 TGGTGAACGAGCCTACTTTTAT 57.453 40.909 0.00 0.00 0.00 1.40
148 156 4.929211 CCGATGTGTATGTTCAGTCTTCAA 59.071 41.667 0.00 0.00 0.00 2.69
205 213 4.424566 GGCGACGCCGGTGAAGTA 62.425 66.667 25.24 0.00 39.62 2.24
211 231 2.270850 GCCGGTGAAGTATGGGCA 59.729 61.111 1.90 0.00 43.23 5.36
647 723 2.809307 TTGGACCGAGCGGAAACCA 61.809 57.895 16.83 17.12 38.96 3.67
741 823 1.722677 GCTCGACGTCCAGTCCTAG 59.277 63.158 11.91 0.00 46.92 3.02
744 826 2.625737 CTCGACGTCCAGTCCTAGTTA 58.374 52.381 10.58 0.00 46.92 2.24
745 827 2.350522 TCGACGTCCAGTCCTAGTTAC 58.649 52.381 10.58 0.00 46.92 2.50
746 828 1.061711 CGACGTCCAGTCCTAGTTACG 59.938 57.143 10.58 0.00 46.92 3.18
747 829 2.350522 GACGTCCAGTCCTAGTTACGA 58.649 52.381 3.51 0.00 43.95 3.43
748 830 2.744202 GACGTCCAGTCCTAGTTACGAA 59.256 50.000 3.51 0.00 43.95 3.85
749 831 3.350833 ACGTCCAGTCCTAGTTACGAAT 58.649 45.455 0.00 0.00 34.62 3.34
750 832 4.517285 ACGTCCAGTCCTAGTTACGAATA 58.483 43.478 0.00 0.00 34.62 1.75
751 833 4.574013 ACGTCCAGTCCTAGTTACGAATAG 59.426 45.833 0.00 0.00 34.62 1.73
752 834 4.554330 CGTCCAGTCCTAGTTACGAATAGC 60.554 50.000 0.00 0.00 32.35 2.97
753 835 4.579753 GTCCAGTCCTAGTTACGAATAGCT 59.420 45.833 0.00 0.00 0.00 3.32
754 836 4.579340 TCCAGTCCTAGTTACGAATAGCTG 59.421 45.833 0.00 0.00 0.00 4.24
755 837 4.579340 CCAGTCCTAGTTACGAATAGCTGA 59.421 45.833 0.00 0.00 0.00 4.26
756 838 5.505985 CCAGTCCTAGTTACGAATAGCTGAC 60.506 48.000 0.00 0.00 0.00 3.51
757 839 4.272991 AGTCCTAGTTACGAATAGCTGACG 59.727 45.833 0.00 1.63 0.00 4.35
758 840 3.562973 TCCTAGTTACGAATAGCTGACGG 59.437 47.826 0.00 0.00 0.00 4.79
759 841 3.562973 CCTAGTTACGAATAGCTGACGGA 59.437 47.826 0.00 0.00 0.00 4.69
760 842 3.417690 AGTTACGAATAGCTGACGGAC 57.582 47.619 0.00 3.51 0.00 4.79
761 843 2.107178 GTTACGAATAGCTGACGGACG 58.893 52.381 0.00 0.00 0.00 4.79
762 844 1.372582 TACGAATAGCTGACGGACGT 58.627 50.000 0.00 0.00 36.52 4.34
763 845 0.179171 ACGAATAGCTGACGGACGTG 60.179 55.000 0.53 0.00 0.00 4.49
764 846 0.098200 CGAATAGCTGACGGACGTGA 59.902 55.000 0.53 0.00 0.00 4.35
765 847 1.268589 CGAATAGCTGACGGACGTGAT 60.269 52.381 0.53 0.00 0.00 3.06
766 848 2.794981 CGAATAGCTGACGGACGTGATT 60.795 50.000 0.53 0.00 0.00 2.57
767 849 2.961526 ATAGCTGACGGACGTGATTT 57.038 45.000 0.53 0.00 0.00 2.17
768 850 1.990799 TAGCTGACGGACGTGATTTG 58.009 50.000 0.53 0.00 0.00 2.32
769 851 0.033504 AGCTGACGGACGTGATTTGT 59.966 50.000 0.53 0.00 0.00 2.83
770 852 0.865769 GCTGACGGACGTGATTTGTT 59.134 50.000 0.53 0.00 0.00 2.83
771 853 2.063266 GCTGACGGACGTGATTTGTTA 58.937 47.619 0.53 0.00 0.00 2.41
772 854 2.671396 GCTGACGGACGTGATTTGTTAT 59.329 45.455 0.53 0.00 0.00 1.89
773 855 3.124636 GCTGACGGACGTGATTTGTTATT 59.875 43.478 0.53 0.00 0.00 1.40
774 856 4.378046 GCTGACGGACGTGATTTGTTATTT 60.378 41.667 0.53 0.00 0.00 1.40
775 857 5.272167 TGACGGACGTGATTTGTTATTTC 57.728 39.130 0.53 0.00 0.00 2.17
776 858 4.750598 TGACGGACGTGATTTGTTATTTCA 59.249 37.500 0.53 0.00 0.00 2.69
777 859 5.236695 TGACGGACGTGATTTGTTATTTCAA 59.763 36.000 0.53 0.00 0.00 2.69
778 860 6.062434 ACGGACGTGATTTGTTATTTCAAA 57.938 33.333 0.00 0.00 40.74 2.69
779 861 6.496571 ACGGACGTGATTTGTTATTTCAAAA 58.503 32.000 0.00 0.00 40.05 2.44
780 862 6.973474 ACGGACGTGATTTGTTATTTCAAAAA 59.027 30.769 0.00 0.00 40.05 1.94
781 863 7.166804 ACGGACGTGATTTGTTATTTCAAAAAG 59.833 33.333 0.00 0.00 40.05 2.27
782 864 7.377397 CGGACGTGATTTGTTATTTCAAAAAGA 59.623 33.333 0.00 0.00 40.05 2.52
783 865 8.476925 GGACGTGATTTGTTATTTCAAAAAGAC 58.523 33.333 0.00 0.00 40.05 3.01
784 866 8.918961 ACGTGATTTGTTATTTCAAAAAGACA 57.081 26.923 0.00 0.00 40.05 3.41
785 867 8.803799 ACGTGATTTGTTATTTCAAAAAGACAC 58.196 29.630 0.00 0.00 40.05 3.67
786 868 8.802856 CGTGATTTGTTATTTCAAAAAGACACA 58.197 29.630 0.00 0.00 40.05 3.72
816 898 7.831078 ATCATACTGCTGCAGCATGATATTCG 61.831 42.308 38.33 27.74 46.76 3.34
824 906 5.170748 TGCAGCATGATATTCGTATACTGG 58.829 41.667 0.00 0.00 39.69 4.00
831 913 5.311265 TGATATTCGTATACTGGAGGACGT 58.689 41.667 0.56 0.00 36.69 4.34
902 989 3.004734 CGAAGATTCAGGCCAACAAAACT 59.995 43.478 5.01 0.00 0.00 2.66
915 1004 6.293353 GGCCAACAAAACTAATTCAAATGGTG 60.293 38.462 0.00 0.00 0.00 4.17
920 1009 7.666623 ACAAAACTAATTCAAATGGTGTAGGG 58.333 34.615 0.00 0.00 0.00 3.53
921 1010 6.850752 AAACTAATTCAAATGGTGTAGGGG 57.149 37.500 0.00 0.00 0.00 4.79
922 1011 4.278310 ACTAATTCAAATGGTGTAGGGGC 58.722 43.478 0.00 0.00 0.00 5.80
923 1012 2.159179 ATTCAAATGGTGTAGGGGCC 57.841 50.000 0.00 0.00 0.00 5.80
947 1036 3.044059 GCACTTGCACTCCATCGCC 62.044 63.158 0.00 0.00 41.59 5.54
955 1044 0.804989 CACTCCATCGCCAACCTTTC 59.195 55.000 0.00 0.00 0.00 2.62
1009 1098 1.877637 CGAGTTGTCAATGTCACCCA 58.122 50.000 0.00 0.00 0.00 4.51
1196 1292 2.815647 GCCGTCTTCTTCCCGCTG 60.816 66.667 0.00 0.00 0.00 5.18
1283 1382 3.966026 CTCCGGCGTCAGGTTCGTC 62.966 68.421 6.01 0.00 0.00 4.20
1464 1569 3.078836 GCCGTGGCAGTAGGGGTA 61.079 66.667 5.89 0.00 41.49 3.69
1687 1798 1.956297 TGGTAACCAAACCACACTCG 58.044 50.000 0.00 0.00 44.68 4.18
1691 1802 2.116827 AACCAAACCACACTCGACAA 57.883 45.000 0.00 0.00 0.00 3.18
1694 1805 1.194547 CCAAACCACACTCGACAATCG 59.805 52.381 0.00 0.00 42.10 3.34
1709 1821 2.093152 ACAATCGTACGATTCGTTTGCC 59.907 45.455 34.40 2.79 42.30 4.52
1715 1827 0.391263 ACGATTCGTTTGCCTCCTCC 60.391 55.000 5.75 0.00 36.35 4.30
1726 1838 1.910580 GCCTCCTCCGTCCCAATTCA 61.911 60.000 0.00 0.00 0.00 2.57
1727 1839 0.839946 CCTCCTCCGTCCCAATTCAT 59.160 55.000 0.00 0.00 0.00 2.57
1728 1840 1.212935 CCTCCTCCGTCCCAATTCATT 59.787 52.381 0.00 0.00 0.00 2.57
1729 1841 2.565841 CTCCTCCGTCCCAATTCATTC 58.434 52.381 0.00 0.00 0.00 2.67
1730 1842 1.912731 TCCTCCGTCCCAATTCATTCA 59.087 47.619 0.00 0.00 0.00 2.57
1798 1921 1.298190 GTCGCCGTCGAGTACATCC 60.298 63.158 0.00 0.00 46.46 3.51
1875 1998 2.374830 ATCCGATCCCTGAAGCAGCG 62.375 60.000 0.00 0.00 0.00 5.18
1937 2069 2.697250 CTACGTCGCCATCTCGTCCG 62.697 65.000 0.00 0.00 38.69 4.79
2151 2304 3.522731 CGAGGACCTGGAGCGGAG 61.523 72.222 0.00 0.00 0.00 4.63
2235 2388 3.434319 GACCTCGGTGGCGTCGTA 61.434 66.667 0.00 0.00 40.22 3.43
2236 2389 3.392595 GACCTCGGTGGCGTCGTAG 62.393 68.421 0.00 0.00 40.22 3.51
2237 2390 4.849329 CCTCGGTGGCGTCGTAGC 62.849 72.222 0.00 0.00 0.00 3.58
2238 2391 4.111016 CTCGGTGGCGTCGTAGCA 62.111 66.667 7.12 0.00 39.27 3.49
2239 2392 4.111016 TCGGTGGCGTCGTAGCAG 62.111 66.667 7.12 0.00 39.27 4.24
2241 2394 3.755628 GGTGGCGTCGTAGCAGGA 61.756 66.667 7.12 0.00 39.27 3.86
2242 2395 2.506438 GTGGCGTCGTAGCAGGAC 60.506 66.667 7.12 0.00 39.27 3.85
2247 2400 3.271014 GTCGTAGCAGGACGTGGA 58.729 61.111 0.00 0.00 43.39 4.02
2248 2401 1.807886 GTCGTAGCAGGACGTGGAT 59.192 57.895 0.00 0.00 43.39 3.41
2249 2402 0.172803 GTCGTAGCAGGACGTGGATT 59.827 55.000 0.00 0.00 43.39 3.01
2250 2403 0.892755 TCGTAGCAGGACGTGGATTT 59.107 50.000 0.00 0.00 43.39 2.17
2251 2404 1.274167 TCGTAGCAGGACGTGGATTTT 59.726 47.619 0.00 0.00 43.39 1.82
2252 2405 2.073816 CGTAGCAGGACGTGGATTTTT 58.926 47.619 0.00 0.00 38.04 1.94
2253 2406 3.056678 TCGTAGCAGGACGTGGATTTTTA 60.057 43.478 0.00 0.00 43.39 1.52
2254 2407 3.306166 CGTAGCAGGACGTGGATTTTTAG 59.694 47.826 0.00 0.00 38.04 1.85
2255 2408 3.695830 AGCAGGACGTGGATTTTTAGA 57.304 42.857 0.00 0.00 0.00 2.10
2256 2409 4.015872 AGCAGGACGTGGATTTTTAGAA 57.984 40.909 0.00 0.00 0.00 2.10
2257 2410 3.751698 AGCAGGACGTGGATTTTTAGAAC 59.248 43.478 0.00 0.00 0.00 3.01
2258 2411 3.500680 GCAGGACGTGGATTTTTAGAACA 59.499 43.478 0.00 0.00 0.00 3.18
2259 2412 4.378459 GCAGGACGTGGATTTTTAGAACAG 60.378 45.833 0.00 0.00 0.00 3.16
2260 2413 3.751698 AGGACGTGGATTTTTAGAACAGC 59.248 43.478 0.00 0.00 0.00 4.40
2261 2414 3.751698 GGACGTGGATTTTTAGAACAGCT 59.248 43.478 0.00 0.00 0.00 4.24
2262 2415 4.378459 GGACGTGGATTTTTAGAACAGCTG 60.378 45.833 13.48 13.48 0.00 4.24
2263 2416 3.058224 ACGTGGATTTTTAGAACAGCTGC 60.058 43.478 15.27 0.00 0.00 5.25
2264 2417 3.058293 CGTGGATTTTTAGAACAGCTGCA 60.058 43.478 15.27 0.00 0.00 4.41
2265 2418 4.379813 CGTGGATTTTTAGAACAGCTGCAT 60.380 41.667 15.27 2.22 0.00 3.96
2266 2419 5.098211 GTGGATTTTTAGAACAGCTGCATC 58.902 41.667 15.27 12.87 0.00 3.91
2267 2420 4.158394 TGGATTTTTAGAACAGCTGCATCC 59.842 41.667 15.27 11.70 0.00 3.51
2268 2421 4.440663 GGATTTTTAGAACAGCTGCATCCC 60.441 45.833 15.27 3.84 0.00 3.85
2269 2422 1.737838 TTTAGAACAGCTGCATCCCG 58.262 50.000 15.27 0.00 0.00 5.14
2270 2423 0.107703 TTAGAACAGCTGCATCCCGG 60.108 55.000 15.27 0.00 0.00 5.73
2271 2424 2.593468 TAGAACAGCTGCATCCCGGC 62.593 60.000 15.27 0.00 46.56 6.13
2277 2430 4.431131 CTGCATCCCGGCCCTTGT 62.431 66.667 0.00 0.00 0.00 3.16
2278 2431 3.012119 TGCATCCCGGCCCTTGTA 61.012 61.111 0.00 0.00 0.00 2.41
2279 2432 2.343475 CTGCATCCCGGCCCTTGTAT 62.343 60.000 0.00 0.00 0.00 2.29
2280 2433 1.600916 GCATCCCGGCCCTTGTATC 60.601 63.158 0.00 0.00 0.00 2.24
2281 2434 1.073199 CATCCCGGCCCTTGTATCC 59.927 63.158 0.00 0.00 0.00 2.59
2282 2435 1.073706 ATCCCGGCCCTTGTATCCT 60.074 57.895 0.00 0.00 0.00 3.24
2283 2436 1.418908 ATCCCGGCCCTTGTATCCTG 61.419 60.000 0.00 0.00 0.00 3.86
2284 2437 2.510906 CCGGCCCTTGTATCCTGG 59.489 66.667 0.00 0.00 0.00 4.45
2285 2438 2.375345 CCGGCCCTTGTATCCTGGT 61.375 63.158 0.00 0.00 0.00 4.00
2286 2439 1.607612 CGGCCCTTGTATCCTGGTT 59.392 57.895 0.00 0.00 0.00 3.67
2287 2440 0.748005 CGGCCCTTGTATCCTGGTTG 60.748 60.000 0.00 0.00 0.00 3.77
2288 2441 0.331616 GGCCCTTGTATCCTGGTTGT 59.668 55.000 0.00 0.00 0.00 3.32
2289 2442 1.682087 GGCCCTTGTATCCTGGTTGTC 60.682 57.143 0.00 0.00 0.00 3.18
2290 2443 1.682087 GCCCTTGTATCCTGGTTGTCC 60.682 57.143 0.00 0.00 0.00 4.02
2291 2444 1.633432 CCCTTGTATCCTGGTTGTCCA 59.367 52.381 0.00 0.00 42.05 4.02
2292 2445 2.041081 CCCTTGTATCCTGGTTGTCCAA 59.959 50.000 0.00 0.00 43.81 3.53
2293 2446 3.309121 CCCTTGTATCCTGGTTGTCCAAT 60.309 47.826 0.00 0.00 43.81 3.16
2294 2447 4.080015 CCCTTGTATCCTGGTTGTCCAATA 60.080 45.833 0.00 0.00 43.81 1.90
2295 2448 5.399038 CCCTTGTATCCTGGTTGTCCAATAT 60.399 44.000 0.00 0.00 43.81 1.28
2296 2449 6.129179 CCTTGTATCCTGGTTGTCCAATATT 58.871 40.000 0.00 0.00 43.81 1.28
2297 2450 6.039717 CCTTGTATCCTGGTTGTCCAATATTG 59.960 42.308 8.58 8.58 43.81 1.90
2298 2451 4.887071 TGTATCCTGGTTGTCCAATATTGC 59.113 41.667 10.11 0.00 43.81 3.56
2299 2452 3.737559 TCCTGGTTGTCCAATATTGCT 57.262 42.857 10.11 0.00 43.81 3.91
2300 2453 4.046286 TCCTGGTTGTCCAATATTGCTT 57.954 40.909 10.11 0.00 43.81 3.91
2301 2454 4.415596 TCCTGGTTGTCCAATATTGCTTT 58.584 39.130 10.11 0.00 43.81 3.51
2302 2455 5.575157 TCCTGGTTGTCCAATATTGCTTTA 58.425 37.500 10.11 0.00 43.81 1.85
2303 2456 6.013379 TCCTGGTTGTCCAATATTGCTTTAA 58.987 36.000 10.11 0.04 43.81 1.52
2304 2457 6.152661 TCCTGGTTGTCCAATATTGCTTTAAG 59.847 38.462 10.11 1.79 43.81 1.85
2305 2458 6.152661 CCTGGTTGTCCAATATTGCTTTAAGA 59.847 38.462 10.11 0.00 43.81 2.10
2306 2459 7.147846 CCTGGTTGTCCAATATTGCTTTAAGAT 60.148 37.037 10.11 0.00 43.81 2.40
2307 2460 7.771183 TGGTTGTCCAATATTGCTTTAAGATC 58.229 34.615 10.11 0.00 41.25 2.75
2308 2461 7.615365 TGGTTGTCCAATATTGCTTTAAGATCT 59.385 33.333 10.11 0.00 41.25 2.75
2309 2462 7.917505 GGTTGTCCAATATTGCTTTAAGATCTG 59.082 37.037 10.11 0.00 0.00 2.90
2310 2463 8.462016 GTTGTCCAATATTGCTTTAAGATCTGT 58.538 33.333 10.11 0.00 0.00 3.41
2311 2464 7.988737 TGTCCAATATTGCTTTAAGATCTGTG 58.011 34.615 10.11 0.00 0.00 3.66
2312 2465 6.914757 GTCCAATATTGCTTTAAGATCTGTGC 59.085 38.462 10.11 0.00 0.00 4.57
2313 2466 6.602803 TCCAATATTGCTTTAAGATCTGTGCA 59.397 34.615 10.11 1.97 0.00 4.57
2314 2467 7.122501 TCCAATATTGCTTTAAGATCTGTGCAA 59.877 33.333 19.69 19.69 43.09 4.08
2315 2468 7.221452 CCAATATTGCTTTAAGATCTGTGCAAC 59.779 37.037 19.76 2.27 42.01 4.17
2317 2470 4.488126 TGCTTTAAGATCTGTGCAACAC 57.512 40.909 0.00 0.00 45.67 3.32
2318 2471 3.882288 TGCTTTAAGATCTGTGCAACACA 59.118 39.130 0.00 0.00 45.67 3.72
2319 2472 4.337836 TGCTTTAAGATCTGTGCAACACAA 59.662 37.500 0.00 0.00 45.67 3.33
2320 2473 4.676924 GCTTTAAGATCTGTGCAACACAAC 59.323 41.667 0.00 0.00 45.67 3.32
2321 2474 5.506317 GCTTTAAGATCTGTGCAACACAACT 60.506 40.000 0.00 0.00 45.67 3.16
2322 2475 6.293407 GCTTTAAGATCTGTGCAACACAACTA 60.293 38.462 0.00 0.00 45.67 2.24
2323 2476 7.561021 TTTAAGATCTGTGCAACACAACTAA 57.439 32.000 0.00 0.00 45.67 2.24
2324 2477 5.424121 AAGATCTGTGCAACACAACTAAC 57.576 39.130 0.00 0.00 45.67 2.34
2325 2478 4.708177 AGATCTGTGCAACACAACTAACT 58.292 39.130 0.00 0.00 45.67 2.24
2326 2479 5.126067 AGATCTGTGCAACACAACTAACTT 58.874 37.500 0.00 0.00 45.67 2.66
2327 2480 5.590259 AGATCTGTGCAACACAACTAACTTT 59.410 36.000 0.00 0.00 45.67 2.66
2328 2481 5.637006 TCTGTGCAACACAACTAACTTTT 57.363 34.783 1.64 0.00 45.67 2.27
2329 2482 5.636837 TCTGTGCAACACAACTAACTTTTC 58.363 37.500 1.64 0.00 45.67 2.29
2330 2483 4.407818 TGTGCAACACAACTAACTTTTCG 58.592 39.130 0.00 0.00 45.67 3.46
2331 2484 4.083217 TGTGCAACACAACTAACTTTTCGT 60.083 37.500 0.00 0.00 45.67 3.85
2332 2485 5.121925 TGTGCAACACAACTAACTTTTCGTA 59.878 36.000 0.00 0.00 45.67 3.43
2333 2486 6.183360 TGTGCAACACAACTAACTTTTCGTAT 60.183 34.615 0.00 0.00 45.67 3.06
2334 2487 6.140108 GTGCAACACAACTAACTTTTCGTATG 59.860 38.462 0.00 0.00 36.32 2.39
2335 2488 6.037281 TGCAACACAACTAACTTTTCGTATGA 59.963 34.615 0.00 0.00 0.00 2.15
2336 2489 6.908284 GCAACACAACTAACTTTTCGTATGAA 59.092 34.615 0.00 0.00 0.00 2.57
2337 2490 7.429920 GCAACACAACTAACTTTTCGTATGAAA 59.570 33.333 6.00 6.00 42.21 2.69
2434 2587 8.964533 TTATCCTAGATTCTAGATGGAAAGCT 57.035 34.615 20.14 0.80 0.00 3.74
2435 2588 7.870426 ATCCTAGATTCTAGATGGAAAGCTT 57.130 36.000 20.14 0.00 0.00 3.74
2436 2589 7.682787 TCCTAGATTCTAGATGGAAAGCTTT 57.317 36.000 20.14 12.53 0.00 3.51
2437 2590 7.504403 TCCTAGATTCTAGATGGAAAGCTTTG 58.496 38.462 18.30 0.00 0.00 2.77
2438 2591 6.204495 CCTAGATTCTAGATGGAAAGCTTTGC 59.796 42.308 22.47 22.47 0.00 3.68
2439 2592 4.886489 AGATTCTAGATGGAAAGCTTTGCC 59.114 41.667 25.53 20.40 0.00 4.52
2440 2593 3.719268 TCTAGATGGAAAGCTTTGCCA 57.281 42.857 25.53 24.47 35.91 4.92
2441 2594 3.347216 TCTAGATGGAAAGCTTTGCCAC 58.653 45.455 25.53 18.80 33.93 5.01
2442 2595 0.883833 AGATGGAAAGCTTTGCCACG 59.116 50.000 25.53 0.00 33.93 4.94
2443 2596 0.733909 GATGGAAAGCTTTGCCACGC 60.734 55.000 25.53 17.52 33.93 5.34
2444 2597 1.181098 ATGGAAAGCTTTGCCACGCT 61.181 50.000 25.53 11.04 38.30 5.07
2445 2598 1.372128 GGAAAGCTTTGCCACGCTG 60.372 57.895 18.30 0.00 36.45 5.18
2446 2599 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
2447 2600 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
2453 2606 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
2454 2607 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
2455 2608 1.950630 GCCACGCTGCAAAGGTTTG 60.951 57.895 0.00 0.00 41.03 2.93
2456 2609 1.732917 CCACGCTGCAAAGGTTTGA 59.267 52.632 6.63 0.00 40.55 2.69
2457 2610 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69
2458 2611 1.199624 CACGCTGCAAAGGTTTGAAC 58.800 50.000 6.63 0.00 40.55 3.18
2459 2612 1.102978 ACGCTGCAAAGGTTTGAACT 58.897 45.000 6.63 0.00 40.55 3.01
2460 2613 1.476488 ACGCTGCAAAGGTTTGAACTT 59.524 42.857 6.63 0.00 40.55 2.66
2461 2614 2.119457 CGCTGCAAAGGTTTGAACTTC 58.881 47.619 6.63 0.00 40.55 3.01
2462 2615 2.479389 CGCTGCAAAGGTTTGAACTTCA 60.479 45.455 6.63 0.00 40.55 3.02
2463 2616 3.520569 GCTGCAAAGGTTTGAACTTCAA 58.479 40.909 6.63 0.00 40.55 2.69
2464 2617 3.932089 GCTGCAAAGGTTTGAACTTCAAA 59.068 39.130 12.12 12.12 43.37 2.69
2465 2618 4.391523 GCTGCAAAGGTTTGAACTTCAAAA 59.608 37.500 16.79 1.47 46.53 2.44
2466 2619 5.065090 GCTGCAAAGGTTTGAACTTCAAAAT 59.935 36.000 16.79 7.70 46.53 1.82
2467 2620 6.257630 GCTGCAAAGGTTTGAACTTCAAAATA 59.742 34.615 16.79 0.00 46.53 1.40
2468 2621 7.041848 GCTGCAAAGGTTTGAACTTCAAAATAT 60.042 33.333 16.79 5.25 46.53 1.28
2469 2622 8.140677 TGCAAAGGTTTGAACTTCAAAATATG 57.859 30.769 16.79 13.98 46.53 1.78
2470 2623 7.768120 TGCAAAGGTTTGAACTTCAAAATATGT 59.232 29.630 16.79 1.26 46.53 2.29
2471 2624 8.611757 GCAAAGGTTTGAACTTCAAAATATGTT 58.388 29.630 16.79 6.38 46.53 2.71
2518 2671 1.203065 GTGTTTGCACGAATCGCGA 59.797 52.632 13.09 13.09 44.57 5.87
2519 2672 0.179225 GTGTTTGCACGAATCGCGAT 60.179 50.000 17.62 17.62 44.57 4.58
2520 2673 0.179227 TGTTTGCACGAATCGCGATG 60.179 50.000 24.47 13.82 44.57 3.84
2521 2674 1.225991 TTTGCACGAATCGCGATGC 60.226 52.632 24.47 23.10 44.57 3.91
2534 2687 1.572941 CGATGCGCAGAATGGATGG 59.427 57.895 18.32 0.00 35.86 3.51
2535 2688 1.285023 GATGCGCAGAATGGATGGC 59.715 57.895 18.32 0.00 35.86 4.40
2536 2689 1.152819 ATGCGCAGAATGGATGGCT 60.153 52.632 18.32 0.00 35.86 4.75
2537 2690 0.109153 ATGCGCAGAATGGATGGCTA 59.891 50.000 18.32 0.00 35.86 3.93
2538 2691 0.533531 TGCGCAGAATGGATGGCTAG 60.534 55.000 5.66 0.00 35.86 3.42
2539 2692 0.250038 GCGCAGAATGGATGGCTAGA 60.250 55.000 0.30 0.00 35.86 2.43
2540 2693 1.610102 GCGCAGAATGGATGGCTAGAT 60.610 52.381 0.30 0.00 35.86 1.98
2541 2694 2.354103 GCGCAGAATGGATGGCTAGATA 60.354 50.000 0.30 0.00 35.86 1.98
2542 2695 3.519579 CGCAGAATGGATGGCTAGATAG 58.480 50.000 0.00 0.00 35.86 2.08
2543 2696 3.194329 CGCAGAATGGATGGCTAGATAGA 59.806 47.826 0.00 0.00 35.86 1.98
2544 2697 4.677514 CGCAGAATGGATGGCTAGATAGAG 60.678 50.000 0.00 0.00 35.86 2.43
2545 2698 4.465660 GCAGAATGGATGGCTAGATAGAGA 59.534 45.833 0.00 0.00 35.86 3.10
2546 2699 5.394443 GCAGAATGGATGGCTAGATAGAGAG 60.394 48.000 0.00 0.00 35.86 3.20
2547 2700 5.127519 CAGAATGGATGGCTAGATAGAGAGG 59.872 48.000 0.00 0.00 0.00 3.69
2548 2701 3.464720 TGGATGGCTAGATAGAGAGGG 57.535 52.381 0.00 0.00 0.00 4.30
2549 2702 2.107366 GGATGGCTAGATAGAGAGGGC 58.893 57.143 0.00 0.00 0.00 5.19
2550 2703 2.107366 GATGGCTAGATAGAGAGGGCC 58.893 57.143 0.00 0.00 39.93 5.80
2551 2704 0.115349 TGGCTAGATAGAGAGGGCCC 59.885 60.000 16.46 16.46 38.89 5.80
2552 2705 0.968393 GGCTAGATAGAGAGGGCCCG 60.968 65.000 18.44 0.00 34.19 6.13
2553 2706 0.968393 GCTAGATAGAGAGGGCCCGG 60.968 65.000 18.44 0.00 0.00 5.73
2554 2707 0.323908 CTAGATAGAGAGGGCCCGGG 60.324 65.000 19.09 19.09 0.00 5.73
2555 2708 1.072505 TAGATAGAGAGGGCCCGGGT 61.073 60.000 24.63 4.33 0.00 5.28
2556 2709 2.122813 ATAGAGAGGGCCCGGGTG 60.123 66.667 24.63 0.00 0.00 4.61
2581 2734 7.312888 CAGCTGTGCTATTTTATATTTTCGC 57.687 36.000 5.25 0.00 36.40 4.70
2582 2735 6.085458 CAGCTGTGCTATTTTATATTTTCGCG 59.915 38.462 5.25 0.00 36.40 5.87
2583 2736 5.907391 GCTGTGCTATTTTATATTTTCGCGT 59.093 36.000 5.77 0.00 0.00 6.01
2584 2737 6.085068 GCTGTGCTATTTTATATTTTCGCGTC 59.915 38.462 5.77 0.00 0.00 5.19
2585 2738 6.124099 TGTGCTATTTTATATTTTCGCGTCG 58.876 36.000 5.77 0.00 0.00 5.12
2755 2908 4.508128 GATGGAGGCGTTCGCGGA 62.508 66.667 6.13 0.00 41.67 5.54
2814 2967 3.629855 TCTTGTTCGTGCAAGGAAATGAA 59.370 39.130 16.94 0.00 42.96 2.57
2818 2971 1.879380 TCGTGCAAGGAAATGAACTGG 59.121 47.619 0.00 0.00 0.00 4.00
2858 3011 2.661594 GAAGTGTGCCGTCAAAATTCC 58.338 47.619 0.00 0.00 30.45 3.01
2862 3015 3.132111 AGTGTGCCGTCAAAATTCCTTTT 59.868 39.130 0.00 0.00 34.90 2.27
2879 3032 5.543714 TCCTTTTGTAGAGCGTGTCAAATA 58.456 37.500 0.00 0.00 31.45 1.40
2885 3038 3.764885 AGAGCGTGTCAAATATTTGGC 57.235 42.857 23.00 23.00 42.84 4.52
2901 3054 8.851541 AATATTTGGCCATAATAAAGCAATGG 57.148 30.769 6.09 0.00 42.59 3.16
2906 3059 3.305335 GCCATAATAAAGCAATGGACCGG 60.305 47.826 0.00 0.00 42.36 5.28
2928 3081 1.945387 ATCCGTTGCAGCATCTACAG 58.055 50.000 0.00 0.00 0.00 2.74
2930 3083 1.346197 CGTTGCAGCATCTACAGCG 59.654 57.895 0.00 0.00 37.01 5.18
2931 3084 1.078201 CGTTGCAGCATCTACAGCGA 61.078 55.000 0.00 0.00 39.92 4.93
2932 3085 1.078709 GTTGCAGCATCTACAGCGAA 58.921 50.000 0.00 0.00 37.01 4.70
2933 3086 1.464608 GTTGCAGCATCTACAGCGAAA 59.535 47.619 0.00 0.00 37.01 3.46
2942 3095 2.566913 TCTACAGCGAAACTTGGCAAA 58.433 42.857 0.00 0.00 34.07 3.68
2946 3099 1.715519 CAGCGAAACTTGGCAAATTCG 59.284 47.619 28.95 28.95 45.39 3.34
2957 3110 3.364549 TGGCAAATTCGATCCCTCAAAT 58.635 40.909 0.00 0.00 0.00 2.32
2959 3112 3.131046 GGCAAATTCGATCCCTCAAATGT 59.869 43.478 0.00 0.00 0.00 2.71
2964 3117 1.490693 CGATCCCTCAAATGTCCGCG 61.491 60.000 0.00 0.00 0.00 6.46
2970 3123 0.443869 CTCAAATGTCCGCGGACTTG 59.556 55.000 46.72 41.04 44.80 3.16
2971 3124 0.034198 TCAAATGTCCGCGGACTTGA 59.966 50.000 46.72 42.20 44.80 3.02
2972 3125 0.871722 CAAATGTCCGCGGACTTGAA 59.128 50.000 46.72 33.18 44.80 2.69
2991 3144 9.515020 GACTTGAAAAAGTGACATAATGTTGAA 57.485 29.630 0.00 0.00 32.22 2.69
3017 3170 6.269315 ACACATTCACTTTATCTCTAGCTCG 58.731 40.000 0.00 0.00 0.00 5.03
3041 3194 8.686334 TCGGTACCGAGATAACTAACTTTTTAT 58.314 33.333 32.61 0.00 44.01 1.40
3043 3196 9.254133 GGTACCGAGATAACTAACTTTTTATCC 57.746 37.037 0.00 0.00 35.94 2.59
3133 3286 7.673926 AGATCAAACCCAACTAATAAACACCAT 59.326 33.333 0.00 0.00 0.00 3.55
3146 3299 0.537188 ACACCATTACCCTCTCGCAG 59.463 55.000 0.00 0.00 0.00 5.18
3159 3312 4.484236 CCTCTCGCAGATCATTCATCTAC 58.516 47.826 0.00 0.00 40.20 2.59
3174 3327 8.264347 TCATTCATCTACACATGGCTAGTAAAA 58.736 33.333 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 71 2.048222 CAAGACGAGCCGAGCCAA 60.048 61.111 1.50 0.00 0.00 4.52
148 156 2.034687 GGCCGCTCCCATGCATAT 59.965 61.111 0.00 0.00 0.00 1.78
211 231 2.035617 CTTTGCGAGCACACACACGT 62.036 55.000 0.00 0.00 0.00 4.49
515 572 0.320073 TAAAAGCACCCCGACTCACG 60.320 55.000 0.00 0.00 42.18 4.35
741 823 2.107178 CGTCCGTCAGCTATTCGTAAC 58.893 52.381 0.00 0.00 0.00 2.50
744 826 0.179171 CACGTCCGTCAGCTATTCGT 60.179 55.000 0.00 0.00 0.00 3.85
745 827 0.098200 TCACGTCCGTCAGCTATTCG 59.902 55.000 0.00 0.00 0.00 3.34
746 828 2.493713 ATCACGTCCGTCAGCTATTC 57.506 50.000 0.00 0.00 0.00 1.75
747 829 2.930040 CAAATCACGTCCGTCAGCTATT 59.070 45.455 0.00 0.00 0.00 1.73
748 830 2.094182 ACAAATCACGTCCGTCAGCTAT 60.094 45.455 0.00 0.00 0.00 2.97
749 831 1.271379 ACAAATCACGTCCGTCAGCTA 59.729 47.619 0.00 0.00 0.00 3.32
750 832 0.033504 ACAAATCACGTCCGTCAGCT 59.966 50.000 0.00 0.00 0.00 4.24
751 833 0.865769 AACAAATCACGTCCGTCAGC 59.134 50.000 0.00 0.00 0.00 4.26
752 834 4.921470 AATAACAAATCACGTCCGTCAG 57.079 40.909 0.00 0.00 0.00 3.51
753 835 4.750598 TGAAATAACAAATCACGTCCGTCA 59.249 37.500 0.00 0.00 0.00 4.35
754 836 5.272167 TGAAATAACAAATCACGTCCGTC 57.728 39.130 0.00 0.00 0.00 4.79
755 837 5.676532 TTGAAATAACAAATCACGTCCGT 57.323 34.783 0.00 0.00 0.00 4.69
756 838 6.978024 TTTTGAAATAACAAATCACGTCCG 57.022 33.333 0.00 0.00 39.09 4.79
757 839 8.476925 GTCTTTTTGAAATAACAAATCACGTCC 58.523 33.333 0.00 0.00 39.09 4.79
758 840 9.015577 TGTCTTTTTGAAATAACAAATCACGTC 57.984 29.630 0.00 0.00 39.09 4.34
759 841 8.803799 GTGTCTTTTTGAAATAACAAATCACGT 58.196 29.630 0.00 0.00 39.09 4.49
760 842 8.802856 TGTGTCTTTTTGAAATAACAAATCACG 58.197 29.630 0.00 0.00 39.09 4.35
767 849 9.897744 GATCTGATGTGTCTTTTTGAAATAACA 57.102 29.630 0.00 0.00 0.00 2.41
768 850 9.897744 TGATCTGATGTGTCTTTTTGAAATAAC 57.102 29.630 0.00 0.00 0.00 1.89
772 854 9.288576 AGTATGATCTGATGTGTCTTTTTGAAA 57.711 29.630 0.00 0.00 0.00 2.69
773 855 8.724229 CAGTATGATCTGATGTGTCTTTTTGAA 58.276 33.333 0.00 0.00 39.69 2.69
774 856 7.148356 GCAGTATGATCTGATGTGTCTTTTTGA 60.148 37.037 0.00 0.00 39.69 2.69
775 857 6.965500 GCAGTATGATCTGATGTGTCTTTTTG 59.035 38.462 0.00 0.00 39.69 2.44
776 858 6.883217 AGCAGTATGATCTGATGTGTCTTTTT 59.117 34.615 0.00 0.00 39.69 1.94
777 859 6.315642 CAGCAGTATGATCTGATGTGTCTTTT 59.684 38.462 0.00 0.00 43.87 2.27
778 860 5.816258 CAGCAGTATGATCTGATGTGTCTTT 59.184 40.000 0.00 0.00 43.87 2.52
779 861 5.358090 CAGCAGTATGATCTGATGTGTCTT 58.642 41.667 0.00 0.00 43.87 3.01
780 862 4.946445 CAGCAGTATGATCTGATGTGTCT 58.054 43.478 0.00 0.00 43.87 3.41
786 868 2.768698 GCTGCAGCAGTATGATCTGAT 58.231 47.619 33.36 0.00 39.69 2.90
787 869 2.235845 GCTGCAGCAGTATGATCTGA 57.764 50.000 33.36 0.00 39.69 3.27
809 891 5.876612 ACGTCCTCCAGTATACGAATATC 57.123 43.478 0.00 0.00 38.64 1.63
816 898 3.873952 ACTACGAACGTCCTCCAGTATAC 59.126 47.826 2.45 0.00 0.00 1.47
824 906 1.802960 TCACTGACTACGAACGTCCTC 59.197 52.381 2.45 0.66 0.00 3.71
831 913 2.552743 CACTCCACTCACTGACTACGAA 59.447 50.000 0.00 0.00 0.00 3.85
880 967 3.004734 AGTTTTGTTGGCCTGAATCTTCG 59.995 43.478 3.32 0.00 0.00 3.79
902 989 3.637769 GGCCCCTACACCATTTGAATTA 58.362 45.455 0.00 0.00 0.00 1.40
955 1044 5.639757 TCATGGCGAAATAACAATCAACAG 58.360 37.500 0.00 0.00 0.00 3.16
1009 1098 4.033776 CACGGGCAGGGTGGACAT 62.034 66.667 0.00 0.00 0.00 3.06
1283 1382 2.494918 CCCAAGTACTCGGCCTCG 59.505 66.667 0.00 0.00 37.82 4.63
1455 1560 1.274184 TGCAGGATGGTTACCCCTACT 60.274 52.381 0.00 0.00 35.86 2.57
1464 1569 4.329545 ACCGCGTGCAGGATGGTT 62.330 61.111 11.29 0.00 35.86 3.67
1491 1596 3.825160 GAACTGCCACACCGCCTGA 62.825 63.158 0.00 0.00 0.00 3.86
1679 1790 1.135888 TCGTACGATTGTCGAGTGTGG 60.136 52.381 15.28 0.00 43.74 4.17
1682 1793 2.459324 CGAATCGTACGATTGTCGAGTG 59.541 50.000 39.81 19.70 43.74 3.51
1683 1794 2.094894 ACGAATCGTACGATTGTCGAGT 59.905 45.455 38.57 28.27 43.98 4.18
1684 1795 2.701807 ACGAATCGTACGATTGTCGAG 58.298 47.619 38.57 27.82 43.98 4.04
1685 1796 2.811902 ACGAATCGTACGATTGTCGA 57.188 45.000 38.57 14.57 43.98 4.20
1686 1797 3.570576 CAAACGAATCGTACGATTGTCG 58.429 45.455 39.81 36.50 43.98 4.35
1687 1798 3.331178 GCAAACGAATCGTACGATTGTC 58.669 45.455 39.81 27.80 43.98 3.18
1691 1802 2.190981 GAGGCAAACGAATCGTACGAT 58.809 47.619 24.66 24.66 39.99 3.73
1694 1805 1.925185 GAGGAGGCAAACGAATCGTAC 59.075 52.381 9.30 1.53 39.99 3.67
1709 1821 2.092968 TGAATGAATTGGGACGGAGGAG 60.093 50.000 0.00 0.00 0.00 3.69
1715 1827 6.020440 CGAATTGAATTGAATGAATTGGGACG 60.020 38.462 0.00 0.00 34.18 4.79
1726 1838 3.548668 CGTGCATGCGAATTGAATTGAAT 59.451 39.130 14.09 0.00 0.00 2.57
1727 1839 2.916089 CGTGCATGCGAATTGAATTGAA 59.084 40.909 14.09 0.00 0.00 2.69
1728 1840 2.161211 TCGTGCATGCGAATTGAATTGA 59.839 40.909 14.09 0.00 37.99 2.57
1729 1841 2.517935 TCGTGCATGCGAATTGAATTG 58.482 42.857 14.09 0.00 37.99 2.32
1730 1842 2.917701 TCGTGCATGCGAATTGAATT 57.082 40.000 14.09 0.00 37.99 2.17
1786 1903 0.381089 CCGTGGAGGATGTACTCGAC 59.619 60.000 0.00 0.00 45.00 4.20
1861 1984 2.270205 CACCGCTGCTTCAGGGAT 59.730 61.111 11.72 0.00 45.41 3.85
2234 2387 4.811969 TCTAAAAATCCACGTCCTGCTA 57.188 40.909 0.00 0.00 0.00 3.49
2235 2388 3.695830 TCTAAAAATCCACGTCCTGCT 57.304 42.857 0.00 0.00 0.00 4.24
2236 2389 3.500680 TGTTCTAAAAATCCACGTCCTGC 59.499 43.478 0.00 0.00 0.00 4.85
2237 2390 4.378459 GCTGTTCTAAAAATCCACGTCCTG 60.378 45.833 0.00 0.00 0.00 3.86
2238 2391 3.751698 GCTGTTCTAAAAATCCACGTCCT 59.248 43.478 0.00 0.00 0.00 3.85
2239 2392 3.751698 AGCTGTTCTAAAAATCCACGTCC 59.248 43.478 0.00 0.00 0.00 4.79
2240 2393 4.712763 CAGCTGTTCTAAAAATCCACGTC 58.287 43.478 5.25 0.00 0.00 4.34
2241 2394 3.058224 GCAGCTGTTCTAAAAATCCACGT 60.058 43.478 16.64 0.00 0.00 4.49
2242 2395 3.058293 TGCAGCTGTTCTAAAAATCCACG 60.058 43.478 16.64 0.00 0.00 4.94
2243 2396 4.503741 TGCAGCTGTTCTAAAAATCCAC 57.496 40.909 16.64 0.00 0.00 4.02
2244 2397 4.158394 GGATGCAGCTGTTCTAAAAATCCA 59.842 41.667 16.64 0.00 32.93 3.41
2245 2398 4.440663 GGGATGCAGCTGTTCTAAAAATCC 60.441 45.833 16.64 13.44 0.00 3.01
2246 2399 4.676546 GGGATGCAGCTGTTCTAAAAATC 58.323 43.478 16.64 6.03 0.00 2.17
2247 2400 3.129287 CGGGATGCAGCTGTTCTAAAAAT 59.871 43.478 16.64 0.00 0.00 1.82
2248 2401 2.487762 CGGGATGCAGCTGTTCTAAAAA 59.512 45.455 16.64 0.00 0.00 1.94
2249 2402 2.083774 CGGGATGCAGCTGTTCTAAAA 58.916 47.619 16.64 0.00 0.00 1.52
2250 2403 1.678728 CCGGGATGCAGCTGTTCTAAA 60.679 52.381 16.64 0.00 0.00 1.85
2251 2404 0.107703 CCGGGATGCAGCTGTTCTAA 60.108 55.000 16.64 0.00 0.00 2.10
2252 2405 1.522092 CCGGGATGCAGCTGTTCTA 59.478 57.895 16.64 0.00 0.00 2.10
2253 2406 2.270205 CCGGGATGCAGCTGTTCT 59.730 61.111 16.64 0.00 0.00 3.01
2254 2407 3.512516 GCCGGGATGCAGCTGTTC 61.513 66.667 16.64 12.51 0.00 3.18
2260 2413 2.343475 ATACAAGGGCCGGGATGCAG 62.343 60.000 2.18 0.00 0.00 4.41
2261 2414 2.337879 GATACAAGGGCCGGGATGCA 62.338 60.000 2.18 0.00 0.00 3.96
2262 2415 1.600916 GATACAAGGGCCGGGATGC 60.601 63.158 2.18 0.00 0.00 3.91
2263 2416 1.073199 GGATACAAGGGCCGGGATG 59.927 63.158 2.18 0.00 0.00 3.51
2264 2417 1.073706 AGGATACAAGGGCCGGGAT 60.074 57.895 2.18 0.00 41.41 3.85
2265 2418 2.070039 CAGGATACAAGGGCCGGGA 61.070 63.158 2.18 0.00 41.41 5.14
2266 2419 2.510906 CAGGATACAAGGGCCGGG 59.489 66.667 2.18 0.00 41.41 5.73
2267 2420 1.921869 AACCAGGATACAAGGGCCGG 61.922 60.000 0.00 0.00 38.25 6.13
2268 2421 0.748005 CAACCAGGATACAAGGGCCG 60.748 60.000 0.00 0.00 38.25 6.13
2269 2422 0.331616 ACAACCAGGATACAAGGGCC 59.668 55.000 0.00 0.00 38.25 5.80
2270 2423 1.682087 GGACAACCAGGATACAAGGGC 60.682 57.143 0.00 0.00 38.25 5.19
2271 2424 1.633432 TGGACAACCAGGATACAAGGG 59.367 52.381 0.00 0.00 41.77 3.95
2282 2435 7.615365 AGATCTTAAAGCAATATTGGACAACCA 59.385 33.333 17.02 0.00 45.34 3.67
2283 2436 7.917505 CAGATCTTAAAGCAATATTGGACAACC 59.082 37.037 17.02 0.00 0.00 3.77
2284 2437 8.462016 ACAGATCTTAAAGCAATATTGGACAAC 58.538 33.333 17.02 0.00 0.00 3.32
2285 2438 8.461222 CACAGATCTTAAAGCAATATTGGACAA 58.539 33.333 17.02 0.00 0.00 3.18
2286 2439 7.415541 GCACAGATCTTAAAGCAATATTGGACA 60.416 37.037 17.02 0.00 0.00 4.02
2287 2440 6.914757 GCACAGATCTTAAAGCAATATTGGAC 59.085 38.462 17.02 1.44 0.00 4.02
2288 2441 6.602803 TGCACAGATCTTAAAGCAATATTGGA 59.397 34.615 17.02 5.09 0.00 3.53
2289 2442 6.798482 TGCACAGATCTTAAAGCAATATTGG 58.202 36.000 17.02 0.00 0.00 3.16
2290 2443 7.756272 TGTTGCACAGATCTTAAAGCAATATTG 59.244 33.333 18.21 11.27 42.90 1.90
2291 2444 7.756722 GTGTTGCACAGATCTTAAAGCAATATT 59.243 33.333 18.21 0.00 42.90 1.28
2292 2445 7.094248 TGTGTTGCACAGATCTTAAAGCAATAT 60.094 33.333 18.21 0.00 42.90 1.28
2293 2446 6.206438 TGTGTTGCACAGATCTTAAAGCAATA 59.794 34.615 18.21 14.67 42.90 1.90
2294 2447 5.009911 TGTGTTGCACAGATCTTAAAGCAAT 59.990 36.000 18.21 0.00 42.90 3.56
2295 2448 4.337836 TGTGTTGCACAGATCTTAAAGCAA 59.662 37.500 13.71 13.71 39.62 3.91
2296 2449 3.882288 TGTGTTGCACAGATCTTAAAGCA 59.118 39.130 0.00 0.00 39.62 3.91
2297 2450 4.488126 TGTGTTGCACAGATCTTAAAGC 57.512 40.909 0.00 0.00 39.62 3.51
2298 2451 6.064846 AGTTGTGTTGCACAGATCTTAAAG 57.935 37.500 0.00 0.00 45.39 1.85
2299 2452 7.282224 AGTTAGTTGTGTTGCACAGATCTTAAA 59.718 33.333 0.00 0.00 45.39 1.52
2300 2453 6.765989 AGTTAGTTGTGTTGCACAGATCTTAA 59.234 34.615 0.00 0.00 45.39 1.85
2301 2454 6.288294 AGTTAGTTGTGTTGCACAGATCTTA 58.712 36.000 0.00 0.00 45.39 2.10
2302 2455 5.126067 AGTTAGTTGTGTTGCACAGATCTT 58.874 37.500 0.00 0.00 45.39 2.40
2303 2456 4.708177 AGTTAGTTGTGTTGCACAGATCT 58.292 39.130 2.17 0.00 45.39 2.75
2304 2457 5.424121 AAGTTAGTTGTGTTGCACAGATC 57.576 39.130 2.17 0.00 45.39 2.75
2305 2458 5.835113 AAAGTTAGTTGTGTTGCACAGAT 57.165 34.783 2.17 0.00 45.39 2.90
2306 2459 5.636837 GAAAAGTTAGTTGTGTTGCACAGA 58.363 37.500 2.17 0.00 45.39 3.41
2307 2460 4.495472 CGAAAAGTTAGTTGTGTTGCACAG 59.505 41.667 2.17 0.00 45.39 3.66
2308 2461 4.083217 ACGAAAAGTTAGTTGTGTTGCACA 60.083 37.500 0.00 0.00 43.02 4.57
2309 2462 4.408694 ACGAAAAGTTAGTTGTGTTGCAC 58.591 39.130 0.00 0.00 34.56 4.57
2310 2463 4.688511 ACGAAAAGTTAGTTGTGTTGCA 57.311 36.364 0.00 0.00 0.00 4.08
2311 2464 6.423862 TCATACGAAAAGTTAGTTGTGTTGC 58.576 36.000 0.00 0.00 0.00 4.17
2312 2465 8.829514 TTTCATACGAAAAGTTAGTTGTGTTG 57.170 30.769 0.00 0.00 38.19 3.33
2408 2561 9.386122 AGCTTTCCATCTAGAATCTAGGATAAA 57.614 33.333 16.47 10.96 0.00 1.40
2409 2562 8.964533 AGCTTTCCATCTAGAATCTAGGATAA 57.035 34.615 16.47 4.76 0.00 1.75
2410 2563 8.964533 AAGCTTTCCATCTAGAATCTAGGATA 57.035 34.615 16.47 2.95 0.00 2.59
2411 2564 7.870426 AAGCTTTCCATCTAGAATCTAGGAT 57.130 36.000 16.47 6.87 0.00 3.24
2412 2565 7.504403 CAAAGCTTTCCATCTAGAATCTAGGA 58.496 38.462 16.47 5.18 0.00 2.94
2413 2566 6.204495 GCAAAGCTTTCCATCTAGAATCTAGG 59.796 42.308 16.47 2.83 0.00 3.02
2414 2567 6.204495 GGCAAAGCTTTCCATCTAGAATCTAG 59.796 42.308 9.23 10.93 0.00 2.43
2415 2568 6.058183 GGCAAAGCTTTCCATCTAGAATCTA 58.942 40.000 9.23 0.00 0.00 1.98
2416 2569 4.886489 GGCAAAGCTTTCCATCTAGAATCT 59.114 41.667 9.23 0.00 0.00 2.40
2417 2570 4.641989 TGGCAAAGCTTTCCATCTAGAATC 59.358 41.667 19.97 0.00 0.00 2.52
2418 2571 4.400567 GTGGCAAAGCTTTCCATCTAGAAT 59.599 41.667 24.04 0.00 31.83 2.40
2419 2572 3.758554 GTGGCAAAGCTTTCCATCTAGAA 59.241 43.478 24.04 5.89 31.83 2.10
2420 2573 3.347216 GTGGCAAAGCTTTCCATCTAGA 58.653 45.455 24.04 0.00 31.83 2.43
2421 2574 2.096496 CGTGGCAAAGCTTTCCATCTAG 59.904 50.000 24.04 15.77 31.83 2.43
2422 2575 2.083774 CGTGGCAAAGCTTTCCATCTA 58.916 47.619 24.04 6.48 31.83 1.98
2423 2576 0.883833 CGTGGCAAAGCTTTCCATCT 59.116 50.000 24.04 0.00 31.83 2.90
2424 2577 0.733909 GCGTGGCAAAGCTTTCCATC 60.734 55.000 24.04 17.74 31.83 3.51
2425 2578 1.181098 AGCGTGGCAAAGCTTTCCAT 61.181 50.000 24.04 12.24 37.97 3.41
2426 2579 1.827789 AGCGTGGCAAAGCTTTCCA 60.828 52.632 19.97 19.97 37.97 3.53
2427 2580 1.372128 CAGCGTGGCAAAGCTTTCC 60.372 57.895 9.23 13.81 39.27 3.13
2428 2581 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
2429 2582 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
2430 2583 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
2436 2589 2.422231 AAACCTTTGCAGCGTGGCA 61.422 52.632 0.00 0.00 43.19 4.92
2437 2590 1.950630 CAAACCTTTGCAGCGTGGC 60.951 57.895 0.00 0.00 0.00 5.01
2438 2591 0.102120 TTCAAACCTTTGCAGCGTGG 59.898 50.000 0.00 0.00 38.05 4.94
2439 2592 1.199624 GTTCAAACCTTTGCAGCGTG 58.800 50.000 0.00 0.00 38.05 5.34
2440 2593 1.102978 AGTTCAAACCTTTGCAGCGT 58.897 45.000 0.00 0.00 38.05 5.07
2441 2594 2.119457 GAAGTTCAAACCTTTGCAGCG 58.881 47.619 0.00 0.00 38.05 5.18
2442 2595 3.163630 TGAAGTTCAAACCTTTGCAGC 57.836 42.857 2.20 0.00 38.05 5.25
2443 2596 6.667007 ATTTTGAAGTTCAAACCTTTGCAG 57.333 33.333 26.72 0.00 45.03 4.41
2444 2597 7.768120 ACATATTTTGAAGTTCAAACCTTTGCA 59.232 29.630 26.72 13.39 45.03 4.08
2445 2598 8.141835 ACATATTTTGAAGTTCAAACCTTTGC 57.858 30.769 26.72 0.00 45.03 3.68
2500 2653 0.179225 ATCGCGATTCGTGCAAACAC 60.179 50.000 17.62 0.00 43.76 3.32
2501 2654 0.179227 CATCGCGATTCGTGCAAACA 60.179 50.000 21.14 0.00 37.28 2.83
2502 2655 1.455908 GCATCGCGATTCGTGCAAAC 61.456 55.000 23.50 1.07 41.45 2.93
2503 2656 1.225991 GCATCGCGATTCGTGCAAA 60.226 52.632 23.50 0.00 41.45 3.68
2504 2657 2.399217 GCATCGCGATTCGTGCAA 59.601 55.556 23.50 0.00 41.45 4.08
2516 2669 1.572941 CCATCCATTCTGCGCATCG 59.427 57.895 12.24 0.00 0.00 3.84
2517 2670 1.170919 AGCCATCCATTCTGCGCATC 61.171 55.000 12.24 0.00 0.00 3.91
2518 2671 0.109153 TAGCCATCCATTCTGCGCAT 59.891 50.000 12.24 0.00 0.00 4.73
2519 2672 0.533531 CTAGCCATCCATTCTGCGCA 60.534 55.000 10.98 10.98 0.00 6.09
2520 2673 0.250038 TCTAGCCATCCATTCTGCGC 60.250 55.000 0.00 0.00 0.00 6.09
2521 2674 2.469274 ATCTAGCCATCCATTCTGCG 57.531 50.000 0.00 0.00 0.00 5.18
2522 2675 4.465660 TCTCTATCTAGCCATCCATTCTGC 59.534 45.833 0.00 0.00 0.00 4.26
2523 2676 5.127519 CCTCTCTATCTAGCCATCCATTCTG 59.872 48.000 0.00 0.00 0.00 3.02
2524 2677 5.271598 CCTCTCTATCTAGCCATCCATTCT 58.728 45.833 0.00 0.00 0.00 2.40
2525 2678 4.405358 CCCTCTCTATCTAGCCATCCATTC 59.595 50.000 0.00 0.00 0.00 2.67
2526 2679 4.360889 CCCTCTCTATCTAGCCATCCATT 58.639 47.826 0.00 0.00 0.00 3.16
2527 2680 3.885333 GCCCTCTCTATCTAGCCATCCAT 60.885 52.174 0.00 0.00 0.00 3.41
2528 2681 2.558575 GCCCTCTCTATCTAGCCATCCA 60.559 54.545 0.00 0.00 0.00 3.41
2529 2682 2.107366 GCCCTCTCTATCTAGCCATCC 58.893 57.143 0.00 0.00 0.00 3.51
2530 2683 2.107366 GGCCCTCTCTATCTAGCCATC 58.893 57.143 0.00 0.00 40.20 3.51
2531 2684 1.273552 GGGCCCTCTCTATCTAGCCAT 60.274 57.143 17.04 0.00 42.29 4.40
2532 2685 0.115349 GGGCCCTCTCTATCTAGCCA 59.885 60.000 17.04 0.00 42.29 4.75
2533 2686 0.968393 CGGGCCCTCTCTATCTAGCC 60.968 65.000 22.43 0.00 39.73 3.93
2534 2687 0.968393 CCGGGCCCTCTCTATCTAGC 60.968 65.000 22.43 0.00 0.00 3.42
2535 2688 0.323908 CCCGGGCCCTCTCTATCTAG 60.324 65.000 22.43 0.00 0.00 2.43
2536 2689 1.072505 ACCCGGGCCCTCTCTATCTA 61.073 60.000 24.08 0.00 0.00 1.98
2537 2690 2.404750 ACCCGGGCCCTCTCTATCT 61.405 63.158 24.08 0.00 0.00 1.98
2538 2691 2.201771 ACCCGGGCCCTCTCTATC 59.798 66.667 24.08 0.00 0.00 2.08
2539 2692 2.122813 CACCCGGGCCCTCTCTAT 60.123 66.667 24.08 0.00 0.00 1.98
2550 2703 3.687321 ATAGCACAGCTGCACCCGG 62.687 63.158 15.27 0.00 46.97 5.73
2551 2704 1.308069 AAATAGCACAGCTGCACCCG 61.308 55.000 15.27 0.00 46.97 5.28
2552 2705 0.890683 AAAATAGCACAGCTGCACCC 59.109 50.000 15.27 0.00 46.97 4.61
2553 2706 5.695851 ATATAAAATAGCACAGCTGCACC 57.304 39.130 15.27 1.79 46.97 5.01
2554 2707 7.096885 CGAAAATATAAAATAGCACAGCTGCAC 60.097 37.037 15.27 5.98 46.97 4.57
2555 2708 6.912051 CGAAAATATAAAATAGCACAGCTGCA 59.088 34.615 15.27 0.00 46.97 4.41
2556 2709 6.129352 GCGAAAATATAAAATAGCACAGCTGC 60.129 38.462 15.27 0.57 44.63 5.25
2557 2710 6.085458 CGCGAAAATATAAAATAGCACAGCTG 59.915 38.462 13.48 13.48 40.10 4.24
2558 2711 6.136071 CGCGAAAATATAAAATAGCACAGCT 58.864 36.000 0.00 0.00 43.41 4.24
2559 2712 5.907391 ACGCGAAAATATAAAATAGCACAGC 59.093 36.000 15.93 0.00 0.00 4.40
2560 2713 6.297641 CGACGCGAAAATATAAAATAGCACAG 59.702 38.462 15.93 0.00 0.00 3.66
2561 2714 6.124099 CGACGCGAAAATATAAAATAGCACA 58.876 36.000 15.93 0.00 0.00 4.57
2562 2715 6.124759 ACGACGCGAAAATATAAAATAGCAC 58.875 36.000 15.93 0.00 0.00 4.40
2563 2716 6.276611 ACGACGCGAAAATATAAAATAGCA 57.723 33.333 15.93 0.00 0.00 3.49
2564 2717 5.495558 CGACGACGCGAAAATATAAAATAGC 59.504 40.000 15.93 0.00 0.00 2.97
2581 2734 4.986587 TGAACCGGTGCGACGACG 62.987 66.667 8.52 2.12 42.93 5.12
2582 2735 2.431942 ATGAACCGGTGCGACGAC 60.432 61.111 8.52 0.00 35.47 4.34
2583 2736 2.431771 CATGAACCGGTGCGACGA 60.432 61.111 8.52 0.00 35.47 4.20
2584 2737 3.487202 CCATGAACCGGTGCGACG 61.487 66.667 8.52 0.00 0.00 5.12
2585 2738 3.799755 GCCATGAACCGGTGCGAC 61.800 66.667 8.52 0.58 0.00 5.19
2755 2908 2.555547 GCCAGCGCAAGGAAGTTGT 61.556 57.895 21.37 0.00 38.55 3.32
2793 2946 3.624326 TCATTTCCTTGCACGAACAAG 57.376 42.857 13.06 13.06 45.42 3.16
2796 2949 3.300009 CAGTTCATTTCCTTGCACGAAC 58.700 45.455 0.00 0.00 34.38 3.95
2814 2967 4.100963 GTGGGAATTTCAAAGGAAACCAGT 59.899 41.667 0.00 0.00 45.22 4.00
2818 2971 4.577834 TCGTGGGAATTTCAAAGGAAAC 57.422 40.909 0.00 0.00 45.22 2.78
2826 2979 1.606668 GCACACTTCGTGGGAATTTCA 59.393 47.619 0.00 0.00 46.45 2.69
2846 2999 5.154222 GCTCTACAAAAGGAATTTTGACGG 58.846 41.667 17.66 8.68 42.79 4.79
2847 3000 4.846137 CGCTCTACAAAAGGAATTTTGACG 59.154 41.667 17.66 9.34 42.79 4.35
2858 3011 7.271223 CCAAATATTTGACACGCTCTACAAAAG 59.729 37.037 26.32 2.90 40.55 2.27
2862 3015 4.094294 GCCAAATATTTGACACGCTCTACA 59.906 41.667 26.32 0.00 40.55 2.74
2863 3016 4.495844 GGCCAAATATTTGACACGCTCTAC 60.496 45.833 26.32 7.35 40.55 2.59
2879 3032 6.290605 GTCCATTGCTTTATTATGGCCAAAT 58.709 36.000 10.96 13.56 38.93 2.32
2885 3038 3.888930 ACCGGTCCATTGCTTTATTATGG 59.111 43.478 0.00 0.00 40.14 2.74
2906 3059 3.194861 TGTAGATGCTGCAACGGATAAC 58.805 45.455 6.36 1.43 0.00 1.89
2915 3068 1.078709 GTTTCGCTGTAGATGCTGCA 58.921 50.000 4.13 4.13 33.72 4.41
2916 3069 1.363744 AGTTTCGCTGTAGATGCTGC 58.636 50.000 0.00 0.00 0.00 5.25
2917 3070 2.094894 CCAAGTTTCGCTGTAGATGCTG 59.905 50.000 0.00 0.00 0.00 4.41
2928 3081 2.044888 TCGAATTTGCCAAGTTTCGC 57.955 45.000 15.56 0.00 40.43 4.70
2930 3083 3.193479 AGGGATCGAATTTGCCAAGTTTC 59.807 43.478 0.00 0.00 0.00 2.78
2931 3084 3.165071 AGGGATCGAATTTGCCAAGTTT 58.835 40.909 0.00 0.00 0.00 2.66
2932 3085 2.755103 GAGGGATCGAATTTGCCAAGTT 59.245 45.455 0.00 0.00 0.00 2.66
2933 3086 2.290896 TGAGGGATCGAATTTGCCAAGT 60.291 45.455 0.00 0.00 0.00 3.16
2942 3095 2.838736 CGGACATTTGAGGGATCGAAT 58.161 47.619 0.00 0.00 0.00 3.34
2946 3099 1.160329 CCGCGGACATTTGAGGGATC 61.160 60.000 24.07 0.00 0.00 3.36
2959 3112 0.941542 CACTTTTTCAAGTCCGCGGA 59.058 50.000 27.28 27.28 41.69 5.54
2964 3117 8.134895 TCAACATTATGTCACTTTTTCAAGTCC 58.865 33.333 0.00 0.00 41.69 3.85
2970 3123 9.900264 GTGTTTTCAACATTATGTCACTTTTTC 57.100 29.630 0.00 0.00 44.35 2.29
2971 3124 9.429359 TGTGTTTTCAACATTATGTCACTTTTT 57.571 25.926 11.83 0.00 44.35 1.94
2972 3125 8.994429 TGTGTTTTCAACATTATGTCACTTTT 57.006 26.923 11.83 0.00 44.35 2.27
2991 3144 7.276658 CGAGCTAGAGATAAAGTGAATGTGTTT 59.723 37.037 0.00 0.00 0.00 2.83
2994 3147 5.689514 CCGAGCTAGAGATAAAGTGAATGTG 59.310 44.000 0.00 0.00 0.00 3.21
2996 3149 5.837437 ACCGAGCTAGAGATAAAGTGAATG 58.163 41.667 0.00 0.00 0.00 2.67
3017 3170 9.254133 GGATAAAAAGTTAGTTATCTCGGTACC 57.746 37.037 0.16 0.16 37.06 3.34
3133 3286 3.031013 TGAATGATCTGCGAGAGGGTAA 58.969 45.455 0.00 0.00 0.00 2.85
3146 3299 6.462500 ACTAGCCATGTGTAGATGAATGATC 58.538 40.000 5.75 0.00 0.00 2.92
3208 4140 9.891828 TTCATGAAGTACAACATGTGAATTAAC 57.108 29.630 22.31 0.00 42.75 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.