Multiple sequence alignment - TraesCS7A01G093700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G093700 chr7A 100.000 6840 0 0 1 6840 57210001 57216840 0.000000e+00 12632.0
1 TraesCS7A01G093700 chr7A 92.414 145 6 4 2643 2784 127336606 127336464 1.160000e-47 202.0
2 TraesCS7A01G093700 chr7A 86.111 144 14 5 2643 2783 332398140 332398280 4.270000e-32 150.0
3 TraesCS7A01G093700 chr7D 96.855 3148 80 8 2783 5915 53782960 53786103 0.000000e+00 5247.0
4 TraesCS7A01G093700 chr7D 95.733 1289 41 5 1361 2642 53781673 53782954 0.000000e+00 2063.0
5 TraesCS7A01G093700 chr7D 98.742 318 4 0 1001 1318 53781002 53781319 3.580000e-157 566.0
6 TraesCS7A01G093700 chr7D 87.636 461 34 14 1 443 53780127 53780582 1.320000e-141 514.0
7 TraesCS7A01G093700 chr7D 94.585 277 12 2 6376 6651 53786179 53786453 6.340000e-115 425.0
8 TraesCS7A01G093700 chr7D 94.393 107 4 2 690 796 53780603 53780707 5.490000e-36 163.0
9 TraesCS7A01G093700 chr7D 86.897 145 12 7 2643 2784 254579244 254579384 9.190000e-34 156.0
10 TraesCS7A01G093700 chr7D 96.250 80 3 0 5964 6043 53786101 53786180 1.550000e-26 132.0
11 TraesCS7A01G093700 chr4A 96.356 2964 85 10 2783 5730 668748713 668751669 0.000000e+00 4854.0
12 TraesCS7A01G093700 chr4A 96.288 2963 92 9 2783 5730 669581135 669578176 0.000000e+00 4846.0
13 TraesCS7A01G093700 chr4A 96.635 1040 34 1 1604 2642 669582180 669581141 0.000000e+00 1725.0
14 TraesCS7A01G093700 chr4A 96.552 957 32 1 1687 2642 668747751 668748707 0.000000e+00 1583.0
15 TraesCS7A01G093700 chr4A 92.359 602 25 6 1004 1590 669582819 669582224 0.000000e+00 837.0
16 TraesCS7A01G093700 chr4A 91.115 619 36 8 1001 1613 668747148 668747753 0.000000e+00 821.0
17 TraesCS7A01G093700 chr4A 89.855 483 39 5 6359 6840 669484927 669484454 4.530000e-171 612.0
18 TraesCS7A01G093700 chr4A 92.346 405 24 5 5935 6336 668787335 668787735 2.770000e-158 569.0
19 TraesCS7A01G093700 chr4A 92.996 257 15 2 5689 5943 669558054 669557799 8.380000e-99 372.0
20 TraesCS7A01G093700 chr4A 92.248 258 14 5 5673 5927 668751663 668751917 1.810000e-95 361.0
21 TraesCS7A01G093700 chr4A 95.946 222 7 2 443 664 58348766 58348985 6.520000e-95 359.0
22 TraesCS7A01G093700 chr4A 84.450 373 16 12 1 347 668743487 668743843 5.110000e-86 329.0
23 TraesCS7A01G093700 chr4A 84.615 364 14 12 1 338 669586399 669586052 2.380000e-84 324.0
24 TraesCS7A01G093700 chr4A 93.396 212 10 3 6126 6336 669485132 669484924 1.850000e-80 311.0
25 TraesCS7A01G093700 chr4A 90.826 218 11 2 6359 6575 668787732 668787941 4.040000e-72 283.0
26 TraesCS7A01G093700 chr4A 92.593 108 6 2 690 796 668746143 668746249 3.300000e-33 154.0
27 TraesCS7A01G093700 chr4A 92.593 108 5 3 690 795 669584819 669584713 1.190000e-32 152.0
28 TraesCS7A01G093700 chr5D 89.578 3387 225 65 2786 6117 508577835 508574522 0.000000e+00 4181.0
29 TraesCS7A01G093700 chr5D 90.755 1060 87 6 1590 2642 508578899 508577844 0.000000e+00 1404.0
30 TraesCS7A01G093700 chr5D 85.185 972 119 11 1675 2641 508613872 508614823 0.000000e+00 974.0
31 TraesCS7A01G093700 chr5D 81.887 1187 124 50 4755 5899 508616993 508618130 0.000000e+00 917.0
32 TraesCS7A01G093700 chr5D 84.211 969 107 24 2783 3733 508614830 508615770 0.000000e+00 900.0
33 TraesCS7A01G093700 chr5D 91.872 406 30 2 1031 1433 508579514 508579109 1.290000e-156 564.0
34 TraesCS7A01G093700 chr5D 81.070 486 62 23 1007 1477 508613164 508613634 1.810000e-95 361.0
35 TraesCS7A01G093700 chr5D 82.000 250 30 9 3880 4121 508615807 508616049 1.500000e-46 198.0
36 TraesCS7A01G093700 chr5D 85.526 152 10 10 2642 2784 52957694 52957546 1.540000e-31 148.0
37 TraesCS7A01G093700 chr5B 87.890 2246 186 42 3921 6113 638670391 638672603 0.000000e+00 2562.0
38 TraesCS7A01G093700 chr5B 91.248 1074 83 9 1571 2641 638668246 638669311 0.000000e+00 1452.0
39 TraesCS7A01G093700 chr5B 81.934 1655 200 61 1044 2641 638647308 638645696 0.000000e+00 1308.0
40 TraesCS7A01G093700 chr5B 87.791 1073 105 20 2783 3842 638669318 638670377 0.000000e+00 1232.0
41 TraesCS7A01G093700 chr5B 84.402 936 110 28 2831 3749 638645560 638644644 0.000000e+00 887.0
42 TraesCS7A01G093700 chr5B 83.403 952 106 26 4626 5558 638643633 638642715 0.000000e+00 835.0
43 TraesCS7A01G093700 chr5B 89.881 504 47 4 4120 4621 638644219 638643718 0.000000e+00 645.0
44 TraesCS7A01G093700 chr5B 88.642 405 32 7 1031 1425 638667702 638668102 1.330000e-131 481.0
45 TraesCS7A01G093700 chr5B 86.957 230 23 6 6112 6336 638672637 638672864 1.140000e-62 252.0
46 TraesCS7A01G093700 chr5B 90.370 135 11 2 6461 6593 638675763 638675897 7.050000e-40 176.0
47 TraesCS7A01G093700 chr5A 88.123 2088 188 27 3911 5967 635936212 635934154 0.000000e+00 2427.0
48 TraesCS7A01G093700 chr5A 87.095 1666 146 24 1001 2641 635938910 635937289 0.000000e+00 1821.0
49 TraesCS7A01G093700 chr5A 86.486 1073 117 21 2783 3842 635937282 635936225 0.000000e+00 1153.0
50 TraesCS7A01G093700 chr5A 85.828 1002 113 12 1659 2641 635948333 635949324 0.000000e+00 1037.0
51 TraesCS7A01G093700 chr5A 81.875 1269 135 51 4622 5835 635951102 635952330 0.000000e+00 981.0
52 TraesCS7A01G093700 chr5A 87.583 749 79 10 3880 4618 635950275 635951019 0.000000e+00 856.0
53 TraesCS7A01G093700 chr5A 86.654 547 52 12 3199 3743 635949720 635950247 2.750000e-163 586.0
54 TraesCS7A01G093700 chr5A 84.746 354 38 12 1001 1343 635947590 635947938 2.360000e-89 340.0
55 TraesCS7A01G093700 chr5A 92.735 234 14 3 444 677 196261808 196261578 1.100000e-87 335.0
56 TraesCS7A01G093700 chr5A 82.972 323 34 11 5801 6117 204995233 204995540 8.740000e-69 272.0
57 TraesCS7A01G093700 chr5A 86.957 184 18 4 6493 6670 635932540 635932357 1.160000e-47 202.0
58 TraesCS7A01G093700 chr5A 85.065 154 11 9 2640 2784 45702521 45702671 5.530000e-31 147.0
59 TraesCS7A01G093700 chr3B 86.345 974 117 10 1675 2641 171173208 171174172 0.000000e+00 1048.0
60 TraesCS7A01G093700 chr3B 86.916 749 81 10 3880 4618 171175138 171175879 0.000000e+00 824.0
61 TraesCS7A01G093700 chr3B 84.762 840 81 22 4674 5495 171177527 171178337 0.000000e+00 798.0
62 TraesCS7A01G093700 chr3B 84.746 826 88 22 2937 3749 171174314 171175114 0.000000e+00 793.0
63 TraesCS7A01G093700 chr3B 94.690 226 10 2 439 664 813188293 813188516 3.930000e-92 350.0
64 TraesCS7A01G093700 chr6A 84.033 858 118 13 2793 3640 4520733 4519885 0.000000e+00 808.0
65 TraesCS7A01G093700 chr6A 94.619 223 10 2 442 664 547732324 547732104 1.830000e-90 344.0
66 TraesCS7A01G093700 chr1B 94.348 230 9 4 444 673 640451457 640451232 3.930000e-92 350.0
67 TraesCS7A01G093700 chr1B 87.013 154 3 14 2643 2785 453029361 453029508 2.550000e-34 158.0
68 TraesCS7A01G093700 chr4B 95.413 218 10 0 444 661 258789163 258789380 1.410000e-91 348.0
69 TraesCS7A01G093700 chr7B 95.023 221 9 2 444 664 743278595 743278377 5.080000e-91 346.0
70 TraesCS7A01G093700 chr7B 85.987 157 10 11 2647 2794 526812873 526812720 2.550000e-34 158.0
71 TraesCS7A01G093700 chr1D 94.298 228 10 3 441 668 46330815 46331039 5.080000e-91 346.0
72 TraesCS7A01G093700 chr2A 93.886 229 12 2 442 670 509549476 509549250 1.830000e-90 344.0
73 TraesCS7A01G093700 chr2A 89.916 238 22 2 428 665 479823134 479823369 8.620000e-79 305.0
74 TraesCS7A01G093700 chr2A 87.149 249 27 5 426 672 80884236 80884481 1.880000e-70 278.0
75 TraesCS7A01G093700 chr2A 89.542 153 6 5 2643 2785 475557576 475557424 1.170000e-42 185.0
76 TraesCS7A01G093700 chrUn 83.282 323 32 11 5801 6117 67781156 67781462 1.880000e-70 278.0
77 TraesCS7A01G093700 chr3A 90.411 146 10 2 2643 2784 17336004 17335859 9.060000e-44 189.0
78 TraesCS7A01G093700 chr6B 100.000 32 0 0 905 936 569033552 569033583 7.410000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G093700 chr7A 57210001 57216840 6839 False 12632.000000 12632 100.000000 1 6840 1 chr7A.!!$F1 6839
1 TraesCS7A01G093700 chr7D 53780127 53786453 6326 False 1301.428571 5247 94.884857 1 6651 7 chr7D.!!$F2 6650
2 TraesCS7A01G093700 chr4A 669578176 669586399 8223 True 1576.800000 4846 92.498000 1 5730 5 chr4A.!!$R3 5729
3 TraesCS7A01G093700 chr4A 668743487 668751917 8430 False 1350.333333 4854 92.219000 1 5927 6 chr4A.!!$F2 5926
4 TraesCS7A01G093700 chr4A 669484454 669485132 678 True 461.500000 612 91.625500 6126 6840 2 chr4A.!!$R2 714
5 TraesCS7A01G093700 chr4A 668787335 668787941 606 False 426.000000 569 91.586000 5935 6575 2 chr4A.!!$F3 640
6 TraesCS7A01G093700 chr5D 508574522 508579514 4992 True 2049.666667 4181 90.735000 1031 6117 3 chr5D.!!$R2 5086
7 TraesCS7A01G093700 chr5D 508613164 508618130 4966 False 670.000000 974 82.870600 1007 5899 5 chr5D.!!$F1 4892
8 TraesCS7A01G093700 chr5B 638667702 638675897 8195 False 1025.833333 2562 88.816333 1031 6593 6 chr5B.!!$F1 5562
9 TraesCS7A01G093700 chr5B 638642715 638647308 4593 True 918.750000 1308 84.905000 1044 5558 4 chr5B.!!$R1 4514
10 TraesCS7A01G093700 chr5A 635932357 635938910 6553 True 1400.750000 2427 87.165250 1001 6670 4 chr5A.!!$R2 5669
11 TraesCS7A01G093700 chr5A 635947590 635952330 4740 False 760.000000 1037 85.337200 1001 5835 5 chr5A.!!$F3 4834
12 TraesCS7A01G093700 chr3B 171173208 171178337 5129 False 865.750000 1048 85.692250 1675 5495 4 chr3B.!!$F2 3820
13 TraesCS7A01G093700 chr6A 4519885 4520733 848 True 808.000000 808 84.033000 2793 3640 1 chr6A.!!$R1 847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 2989 0.034337 TCCAGCACCGGACTTGTTAC 59.966 55.000 9.46 0.0 0.00 2.50 F
2716 7066 0.248012 TGTGTGTGTGGTGAACTCGT 59.752 50.000 0.00 0.0 0.00 4.18 F
2750 7100 0.031449 GCTTGTGGCGGTTTGCTTTA 59.969 50.000 0.00 0.0 45.43 1.85 F
2770 7120 0.594110 TTTGTAAAGCGGGGCGAAAG 59.406 50.000 0.00 0.0 0.00 2.62 F
3584 8073 1.077285 GGGTTGGGTTATGGGACCG 60.077 63.158 0.00 0.0 40.75 4.79 F
4445 9126 0.030504 TGGTGATTGCGTTTGCTGTG 59.969 50.000 0.00 0.0 43.34 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2731 7081 0.031449 TAAAGCAAACCGCCACAAGC 59.969 50.000 0.0 0.0 44.04 4.01 R
4072 8586 0.984230 TTGGTCCAGTCTAGCCCTTG 59.016 55.000 0.0 0.0 0.00 3.61 R
4122 8800 4.620184 GCTTGTGATGAAGTTGAATGCTTC 59.380 41.667 0.0 0.0 41.81 3.86 R
4360 9041 4.888917 TGTTCATCGAGTATGACAAACCA 58.111 39.130 0.0 0.0 44.42 3.67 R
5480 11868 0.491823 TCCCTCAGGACCCTTCTCAA 59.508 55.000 0.0 0.0 37.19 3.02 R
6356 14211 0.541392 TGGCACACACAGTTGAGAGT 59.459 50.000 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.179200 GTTAATGTGCGGCGAACTGG 60.179 55.000 20.38 0.00 0.00 4.00
24 25 2.457743 TAATGTGCGGCGAACTGGGT 62.458 55.000 20.38 4.15 0.00 4.51
98 99 5.340027 GGAAATGGGGATCTAGGAGAAAACA 60.340 44.000 0.00 0.00 0.00 2.83
174 175 3.222603 ACTTCGGCTCCTTGTGAATTTT 58.777 40.909 0.00 0.00 0.00 1.82
197 198 0.249699 TGCATCGACAACGTGAAGGT 60.250 50.000 0.00 0.00 40.69 3.50
385 412 3.453424 AGCATCATAATACGTGCGTGAA 58.547 40.909 7.55 0.00 42.18 3.18
396 427 4.841443 ACGTGCGTGAAGGACATATATA 57.159 40.909 0.00 0.00 41.69 0.86
448 486 6.767524 TCAGAGAGAGAAATGAACTACTCC 57.232 41.667 0.00 0.00 0.00 3.85
449 487 5.654650 TCAGAGAGAGAAATGAACTACTCCC 59.345 44.000 0.00 0.00 0.00 4.30
450 488 5.656416 CAGAGAGAGAAATGAACTACTCCCT 59.344 44.000 0.00 0.00 0.00 4.20
452 490 4.959839 AGAGAGAAATGAACTACTCCCTCC 59.040 45.833 0.00 0.00 0.00 4.30
453 491 3.702045 AGAGAAATGAACTACTCCCTCCG 59.298 47.826 0.00 0.00 0.00 4.63
454 492 3.442076 AGAAATGAACTACTCCCTCCGT 58.558 45.455 0.00 0.00 0.00 4.69
456 494 2.526888 ATGAACTACTCCCTCCGTCA 57.473 50.000 0.00 0.00 0.00 4.35
468 514 2.224209 CCCTCCGTCACAGTTTACAAGT 60.224 50.000 0.00 0.00 0.00 3.16
470 516 3.057734 CTCCGTCACAGTTTACAAGTCC 58.942 50.000 0.00 0.00 0.00 3.85
472 518 3.890756 TCCGTCACAGTTTACAAGTCCTA 59.109 43.478 0.00 0.00 0.00 2.94
479 525 4.082571 ACAGTTTACAAGTCCTACGCGTAT 60.083 41.667 20.91 5.41 0.00 3.06
480 526 5.123820 ACAGTTTACAAGTCCTACGCGTATA 59.876 40.000 20.91 8.44 0.00 1.47
488 534 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
490 536 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
497 543 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
499 545 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
502 548 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
510 556 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
614 1705 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
632 1723 2.254651 CGACCTAGGGATACGCGC 59.745 66.667 14.81 0.00 37.60 6.86
634 1725 1.007618 GACCTAGGGATACGCGCAC 60.008 63.158 14.81 0.00 37.60 5.34
635 1726 1.731433 GACCTAGGGATACGCGCACA 61.731 60.000 14.81 0.00 37.60 4.57
636 1727 1.299926 CCTAGGGATACGCGCACAC 60.300 63.158 5.73 0.00 37.60 3.82
651 1742 2.476619 CGCACACCTTGTAAACTGAGAG 59.523 50.000 0.00 0.00 0.00 3.20
652 1743 3.728845 GCACACCTTGTAAACTGAGAGA 58.271 45.455 0.00 0.00 0.00 3.10
658 1749 4.770010 ACCTTGTAAACTGAGAGAGAGAGG 59.230 45.833 0.00 0.00 0.00 3.69
660 1751 4.659529 TGTAAACTGAGAGAGAGAGGGA 57.340 45.455 0.00 0.00 0.00 4.20
661 1752 4.594970 TGTAAACTGAGAGAGAGAGGGAG 58.405 47.826 0.00 0.00 0.00 4.30
662 1753 3.825908 AAACTGAGAGAGAGAGGGAGT 57.174 47.619 0.00 0.00 0.00 3.85
663 1754 4.938575 AAACTGAGAGAGAGAGGGAGTA 57.061 45.455 0.00 0.00 0.00 2.59
664 1755 4.503714 AACTGAGAGAGAGAGGGAGTAG 57.496 50.000 0.00 0.00 0.00 2.57
667 1758 5.473273 ACTGAGAGAGAGAGGGAGTAGATA 58.527 45.833 0.00 0.00 0.00 1.98
668 1759 6.091555 ACTGAGAGAGAGAGGGAGTAGATAT 58.908 44.000 0.00 0.00 0.00 1.63
669 1760 7.253421 ACTGAGAGAGAGAGGGAGTAGATATA 58.747 42.308 0.00 0.00 0.00 0.86
670 1761 7.737607 ACTGAGAGAGAGAGGGAGTAGATATAA 59.262 40.741 0.00 0.00 0.00 0.98
671 1762 7.913789 TGAGAGAGAGAGGGAGTAGATATAAC 58.086 42.308 0.00 0.00 0.00 1.89
672 1763 7.737607 TGAGAGAGAGAGGGAGTAGATATAACT 59.262 40.741 0.00 0.00 0.00 2.24
673 1764 8.520119 AGAGAGAGAGGGAGTAGATATAACTT 57.480 38.462 0.00 0.00 0.00 2.66
674 1765 9.624037 AGAGAGAGAGGGAGTAGATATAACTTA 57.376 37.037 0.00 0.00 0.00 2.24
680 1771 9.245481 AGAGGGAGTAGATATAACTTATTTCGG 57.755 37.037 0.00 0.00 0.00 4.30
683 1774 7.310237 GGGAGTAGATATAACTTATTTCGGGCA 60.310 40.741 0.00 0.00 0.00 5.36
684 1775 8.092687 GGAGTAGATATAACTTATTTCGGGCAA 58.907 37.037 0.00 0.00 0.00 4.52
686 1777 9.841295 AGTAGATATAACTTATTTCGGGCAAAA 57.159 29.630 0.00 0.00 0.00 2.44
810 2853 1.450312 GATGGTCCAGGCTGGTTCG 60.450 63.158 31.60 7.82 39.03 3.95
864 2946 2.416260 GTACTGGGACGGCGATCC 59.584 66.667 16.62 16.72 39.14 3.36
871 2954 2.577059 GACGGCGATCCACCAGAA 59.423 61.111 16.62 0.00 0.00 3.02
892 2975 1.469703 GGGCAAATGCAAAAATCCAGC 59.530 47.619 7.80 0.00 44.36 4.85
893 2976 2.152830 GGCAAATGCAAAAATCCAGCA 58.847 42.857 7.80 0.00 44.36 4.41
895 2978 2.095617 GCAAATGCAAAAATCCAGCACC 60.096 45.455 0.00 0.00 41.60 5.01
900 2983 1.247567 CAAAAATCCAGCACCGGACT 58.752 50.000 9.46 1.07 38.07 3.85
901 2984 1.613437 CAAAAATCCAGCACCGGACTT 59.387 47.619 9.46 0.00 38.07 3.01
903 2986 0.110486 AAATCCAGCACCGGACTTGT 59.890 50.000 9.46 0.00 38.07 3.16
904 2987 0.110486 AATCCAGCACCGGACTTGTT 59.890 50.000 9.46 0.00 38.07 2.83
905 2988 0.981183 ATCCAGCACCGGACTTGTTA 59.019 50.000 9.46 0.00 38.07 2.41
906 2989 0.034337 TCCAGCACCGGACTTGTTAC 59.966 55.000 9.46 0.00 0.00 2.50
936 4589 5.401550 ACATAAATGCAGTTTGTTGATCCG 58.598 37.500 4.05 0.00 0.00 4.18
946 4599 2.967599 TGTTGATCCGGAGACAGATG 57.032 50.000 11.34 0.00 0.00 2.90
948 4601 1.482593 GTTGATCCGGAGACAGATGGT 59.517 52.381 11.34 0.00 0.00 3.55
949 4602 2.693591 GTTGATCCGGAGACAGATGGTA 59.306 50.000 11.34 0.00 0.00 3.25
950 4603 3.244887 TGATCCGGAGACAGATGGTAT 57.755 47.619 11.34 0.00 0.00 2.73
951 4604 3.576861 TGATCCGGAGACAGATGGTATT 58.423 45.455 11.34 0.00 0.00 1.89
952 4605 3.321968 TGATCCGGAGACAGATGGTATTG 59.678 47.826 11.34 0.00 0.00 1.90
962 4622 6.236409 AGACAGATGGTATTGATAAGCATGG 58.764 40.000 0.00 0.00 35.31 3.66
990 4654 4.641645 CGTGCCCACTGCCCAGAA 62.642 66.667 1.69 0.00 40.16 3.02
991 4655 2.674380 GTGCCCACTGCCCAGAAG 60.674 66.667 1.69 0.00 40.16 2.85
992 4656 3.970410 TGCCCACTGCCCAGAAGG 61.970 66.667 1.69 3.48 40.16 3.46
993 4657 3.650950 GCCCACTGCCCAGAAGGA 61.651 66.667 1.69 0.00 38.24 3.36
995 4659 1.920325 CCCACTGCCCAGAAGGAGA 60.920 63.158 1.69 0.00 38.24 3.71
996 4660 1.277580 CCCACTGCCCAGAAGGAGAT 61.278 60.000 1.69 0.00 38.24 2.75
997 4661 0.622665 CCACTGCCCAGAAGGAGATT 59.377 55.000 1.69 0.00 38.24 2.40
998 4662 1.005215 CCACTGCCCAGAAGGAGATTT 59.995 52.381 1.69 0.00 38.24 2.17
999 4663 2.556114 CCACTGCCCAGAAGGAGATTTT 60.556 50.000 1.69 0.00 38.24 1.82
1356 5102 2.745281 CGCCGTCCATTTTTCTTTCCTA 59.255 45.455 0.00 0.00 0.00 2.94
1379 5420 1.954528 CACAGCTGAACAGGGCTTG 59.045 57.895 23.35 0.00 36.59 4.01
1449 5530 2.560105 GGGAGCAATCAATGGCTAATCC 59.440 50.000 0.00 0.00 41.22 3.01
1498 5631 6.519679 TTCCACGAGTCACTTAAGCTTATA 57.480 37.500 7.08 0.00 0.00 0.98
1499 5632 6.710597 TCCACGAGTCACTTAAGCTTATAT 57.289 37.500 7.08 0.00 0.00 0.86
1500 5633 6.504398 TCCACGAGTCACTTAAGCTTATATG 58.496 40.000 7.08 8.88 0.00 1.78
1501 5634 5.692204 CCACGAGTCACTTAAGCTTATATGG 59.308 44.000 7.08 0.00 0.00 2.74
1553 5691 7.426929 AGCTAACAACATTTGAGTCTAACAG 57.573 36.000 0.00 0.00 0.00 3.16
2013 6355 4.471904 ACCAAAGACGATTCTAGATGCA 57.528 40.909 0.00 0.00 0.00 3.96
2052 6394 4.815108 GGGTCATGGTTCCCCGGC 62.815 72.222 0.00 0.00 37.89 6.13
2176 6518 0.248743 TCCGGTGAATCGTATGTCGC 60.249 55.000 0.00 0.00 39.67 5.19
2242 6590 2.203266 GAGTAGGGGGCATGCAGC 60.203 66.667 21.36 2.19 44.65 5.25
2339 6689 3.908476 TGCAAATGCCCTTGATACCATA 58.092 40.909 2.46 0.00 41.18 2.74
2462 6812 1.110442 CAGACAGTTTTGCACCCCAA 58.890 50.000 0.00 0.00 0.00 4.12
2510 6860 4.975502 GCAAAAGCAAAGGCAATTTTTACC 59.024 37.500 0.00 0.00 44.61 2.85
2642 6992 9.920946 AATTTCCACTTTACAGGTATATGATGT 57.079 29.630 0.00 0.00 0.00 3.06
2643 6993 9.920946 ATTTCCACTTTACAGGTATATGATGTT 57.079 29.630 0.00 0.00 0.00 2.71
2646 6996 8.768397 TCCACTTTACAGGTATATGATGTTTCT 58.232 33.333 0.00 0.00 0.00 2.52
2647 6997 9.396022 CCACTTTACAGGTATATGATGTTTCTT 57.604 33.333 0.00 0.00 0.00 2.52
2651 7001 8.746052 TTACAGGTATATGATGTTTCTTTGGG 57.254 34.615 0.00 0.00 0.00 4.12
2652 7002 5.594317 ACAGGTATATGATGTTTCTTTGGGC 59.406 40.000 0.00 0.00 0.00 5.36
2653 7003 5.829924 CAGGTATATGATGTTTCTTTGGGCT 59.170 40.000 0.00 0.00 0.00 5.19
2654 7004 6.322201 CAGGTATATGATGTTTCTTTGGGCTT 59.678 38.462 0.00 0.00 0.00 4.35
2655 7005 6.322201 AGGTATATGATGTTTCTTTGGGCTTG 59.678 38.462 0.00 0.00 0.00 4.01
2656 7006 6.096846 GGTATATGATGTTTCTTTGGGCTTGT 59.903 38.462 0.00 0.00 0.00 3.16
2657 7007 4.961438 ATGATGTTTCTTTGGGCTTGTT 57.039 36.364 0.00 0.00 0.00 2.83
2658 7008 4.057406 TGATGTTTCTTTGGGCTTGTTG 57.943 40.909 0.00 0.00 0.00 3.33
2659 7009 3.703556 TGATGTTTCTTTGGGCTTGTTGA 59.296 39.130 0.00 0.00 0.00 3.18
2660 7010 3.799281 TGTTTCTTTGGGCTTGTTGAG 57.201 42.857 0.00 0.00 0.00 3.02
2669 7019 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
2670 7020 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
2671 7021 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
2672 7022 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
2682 7032 3.993535 GCCCTCAGCAGAACCTTG 58.006 61.111 0.00 0.00 42.97 3.61
2683 7033 1.073897 GCCCTCAGCAGAACCTTGT 59.926 57.895 0.00 0.00 42.97 3.16
2684 7034 0.324943 GCCCTCAGCAGAACCTTGTA 59.675 55.000 0.00 0.00 42.97 2.41
2685 7035 1.946283 GCCCTCAGCAGAACCTTGTAC 60.946 57.143 0.00 0.00 42.97 2.90
2686 7036 1.625818 CCCTCAGCAGAACCTTGTACT 59.374 52.381 0.00 0.00 0.00 2.73
2687 7037 2.039084 CCCTCAGCAGAACCTTGTACTT 59.961 50.000 0.00 0.00 0.00 2.24
2688 7038 3.330267 CCTCAGCAGAACCTTGTACTTC 58.670 50.000 0.00 0.00 0.00 3.01
2689 7039 3.007398 CCTCAGCAGAACCTTGTACTTCT 59.993 47.826 0.00 0.00 0.00 2.85
2690 7040 4.503991 CCTCAGCAGAACCTTGTACTTCTT 60.504 45.833 0.00 0.00 0.00 2.52
2691 7041 4.380531 TCAGCAGAACCTTGTACTTCTTG 58.619 43.478 0.00 0.00 0.00 3.02
2692 7042 4.130118 CAGCAGAACCTTGTACTTCTTGT 58.870 43.478 0.00 0.00 0.00 3.16
2693 7043 4.576463 CAGCAGAACCTTGTACTTCTTGTT 59.424 41.667 0.00 0.00 0.00 2.83
2694 7044 4.576463 AGCAGAACCTTGTACTTCTTGTTG 59.424 41.667 0.00 0.00 0.00 3.33
2695 7045 4.335594 GCAGAACCTTGTACTTCTTGTTGT 59.664 41.667 0.00 0.00 0.00 3.32
2696 7046 5.730568 GCAGAACCTTGTACTTCTTGTTGTG 60.731 44.000 0.00 0.00 32.19 3.33
2697 7047 5.354234 CAGAACCTTGTACTTCTTGTTGTGT 59.646 40.000 0.00 0.00 0.00 3.72
2698 7048 5.354234 AGAACCTTGTACTTCTTGTTGTGTG 59.646 40.000 0.00 0.00 0.00 3.82
2699 7049 4.585879 ACCTTGTACTTCTTGTTGTGTGT 58.414 39.130 0.00 0.00 0.00 3.72
2700 7050 4.394920 ACCTTGTACTTCTTGTTGTGTGTG 59.605 41.667 0.00 0.00 0.00 3.82
2701 7051 4.394920 CCTTGTACTTCTTGTTGTGTGTGT 59.605 41.667 0.00 0.00 0.00 3.72
2702 7052 4.937696 TGTACTTCTTGTTGTGTGTGTG 57.062 40.909 0.00 0.00 0.00 3.82
2703 7053 4.320023 TGTACTTCTTGTTGTGTGTGTGT 58.680 39.130 0.00 0.00 0.00 3.72
2704 7054 3.829886 ACTTCTTGTTGTGTGTGTGTG 57.170 42.857 0.00 0.00 0.00 3.82
2705 7055 3.146066 ACTTCTTGTTGTGTGTGTGTGT 58.854 40.909 0.00 0.00 0.00 3.72
2706 7056 3.058293 ACTTCTTGTTGTGTGTGTGTGTG 60.058 43.478 0.00 0.00 0.00 3.82
2707 7057 1.809547 TCTTGTTGTGTGTGTGTGTGG 59.190 47.619 0.00 0.00 0.00 4.17
2708 7058 1.539388 CTTGTTGTGTGTGTGTGTGGT 59.461 47.619 0.00 0.00 0.00 4.16
2709 7059 0.877743 TGTTGTGTGTGTGTGTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
2710 7060 1.160989 GTTGTGTGTGTGTGTGGTGA 58.839 50.000 0.00 0.00 0.00 4.02
2711 7061 1.537638 GTTGTGTGTGTGTGTGGTGAA 59.462 47.619 0.00 0.00 0.00 3.18
2712 7062 1.160989 TGTGTGTGTGTGTGGTGAAC 58.839 50.000 0.00 0.00 0.00 3.18
2713 7063 1.271108 TGTGTGTGTGTGTGGTGAACT 60.271 47.619 0.00 0.00 0.00 3.01
2714 7064 1.396996 GTGTGTGTGTGTGGTGAACTC 59.603 52.381 0.00 0.00 0.00 3.01
2715 7065 0.650512 GTGTGTGTGTGGTGAACTCG 59.349 55.000 0.00 0.00 0.00 4.18
2716 7066 0.248012 TGTGTGTGTGGTGAACTCGT 59.752 50.000 0.00 0.00 0.00 4.18
2717 7067 0.650512 GTGTGTGTGGTGAACTCGTG 59.349 55.000 0.00 0.00 0.00 4.35
2718 7068 0.248012 TGTGTGTGGTGAACTCGTGT 59.752 50.000 0.00 0.00 0.00 4.49
2719 7069 1.338294 TGTGTGTGGTGAACTCGTGTT 60.338 47.619 1.86 1.86 39.42 3.32
2720 7070 1.735571 GTGTGTGGTGAACTCGTGTTT 59.264 47.619 4.11 0.00 36.39 2.83
2721 7071 1.735018 TGTGTGGTGAACTCGTGTTTG 59.265 47.619 4.11 0.00 36.39 2.93
2722 7072 1.063469 GTGTGGTGAACTCGTGTTTGG 59.937 52.381 4.11 0.00 36.39 3.28
2723 7073 1.339247 TGTGGTGAACTCGTGTTTGGT 60.339 47.619 4.11 0.00 36.39 3.67
2724 7074 2.093606 TGTGGTGAACTCGTGTTTGGTA 60.094 45.455 4.11 0.00 36.39 3.25
2725 7075 2.286025 GTGGTGAACTCGTGTTTGGTAC 59.714 50.000 4.11 2.69 36.39 3.34
2726 7076 2.168936 TGGTGAACTCGTGTTTGGTACT 59.831 45.455 4.11 0.00 36.39 2.73
2727 7077 2.798847 GGTGAACTCGTGTTTGGTACTC 59.201 50.000 4.11 0.00 36.39 2.59
2728 7078 2.470257 GTGAACTCGTGTTTGGTACTCG 59.530 50.000 4.11 0.00 43.22 4.18
2729 7079 2.099592 TGAACTCGTGTTTGGTACTCGT 59.900 45.455 4.11 0.00 42.63 4.18
2730 7080 2.877043 ACTCGTGTTTGGTACTCGTT 57.123 45.000 0.00 0.00 42.63 3.85
2731 7081 2.466846 ACTCGTGTTTGGTACTCGTTG 58.533 47.619 0.00 0.00 42.63 4.10
2732 7082 1.191647 CTCGTGTTTGGTACTCGTTGC 59.808 52.381 0.00 0.00 42.63 4.17
2733 7083 1.202440 TCGTGTTTGGTACTCGTTGCT 60.202 47.619 0.00 0.00 42.63 3.91
2734 7084 1.595794 CGTGTTTGGTACTCGTTGCTT 59.404 47.619 0.00 0.00 38.55 3.91
2735 7085 2.598907 CGTGTTTGGTACTCGTTGCTTG 60.599 50.000 0.00 0.00 38.55 4.01
2736 7086 2.353579 GTGTTTGGTACTCGTTGCTTGT 59.646 45.455 0.00 0.00 0.00 3.16
2737 7087 2.353269 TGTTTGGTACTCGTTGCTTGTG 59.647 45.455 0.00 0.00 0.00 3.33
2738 7088 1.588674 TTGGTACTCGTTGCTTGTGG 58.411 50.000 0.00 0.00 0.00 4.17
2739 7089 0.882927 TGGTACTCGTTGCTTGTGGC 60.883 55.000 0.00 0.00 42.22 5.01
2740 7090 1.491563 GTACTCGTTGCTTGTGGCG 59.508 57.895 0.00 0.00 45.43 5.69
2741 7091 1.666553 TACTCGTTGCTTGTGGCGG 60.667 57.895 0.00 0.00 45.43 6.13
2742 7092 2.372040 TACTCGTTGCTTGTGGCGGT 62.372 55.000 0.00 0.00 45.43 5.68
2743 7093 2.515057 TCGTTGCTTGTGGCGGTT 60.515 55.556 0.00 0.00 45.43 4.44
2744 7094 2.058829 CTCGTTGCTTGTGGCGGTTT 62.059 55.000 0.00 0.00 45.43 3.27
2745 7095 1.943693 CGTTGCTTGTGGCGGTTTG 60.944 57.895 0.00 0.00 45.43 2.93
2746 7096 2.105930 TTGCTTGTGGCGGTTTGC 59.894 55.556 0.00 0.00 45.43 3.68
2747 7097 2.422231 TTGCTTGTGGCGGTTTGCT 61.422 52.632 0.00 0.00 45.43 3.91
2748 7098 1.954362 TTGCTTGTGGCGGTTTGCTT 61.954 50.000 0.00 0.00 45.43 3.91
2749 7099 1.227234 GCTTGTGGCGGTTTGCTTT 60.227 52.632 0.00 0.00 45.43 3.51
2750 7100 0.031449 GCTTGTGGCGGTTTGCTTTA 59.969 50.000 0.00 0.00 45.43 1.85
2751 7101 1.336795 GCTTGTGGCGGTTTGCTTTAT 60.337 47.619 0.00 0.00 45.43 1.40
2752 7102 2.866065 GCTTGTGGCGGTTTGCTTTATT 60.866 45.455 0.00 0.00 45.43 1.40
2753 7103 3.389221 CTTGTGGCGGTTTGCTTTATTT 58.611 40.909 0.00 0.00 45.43 1.40
2754 7104 2.748605 TGTGGCGGTTTGCTTTATTTG 58.251 42.857 0.00 0.00 45.43 2.32
2755 7105 2.101582 TGTGGCGGTTTGCTTTATTTGT 59.898 40.909 0.00 0.00 45.43 2.83
2756 7106 3.318275 TGTGGCGGTTTGCTTTATTTGTA 59.682 39.130 0.00 0.00 45.43 2.41
2757 7107 4.202121 TGTGGCGGTTTGCTTTATTTGTAA 60.202 37.500 0.00 0.00 45.43 2.41
2758 7108 4.745620 GTGGCGGTTTGCTTTATTTGTAAA 59.254 37.500 0.00 0.00 45.43 2.01
2759 7109 4.985409 TGGCGGTTTGCTTTATTTGTAAAG 59.015 37.500 4.08 4.08 45.43 1.85
2766 7116 2.792749 CTTTATTTGTAAAGCGGGGCG 58.207 47.619 0.00 0.00 31.33 6.13
2767 7117 2.110901 TTATTTGTAAAGCGGGGCGA 57.889 45.000 0.00 0.00 0.00 5.54
2768 7118 2.110901 TATTTGTAAAGCGGGGCGAA 57.889 45.000 0.00 0.00 0.00 4.70
2769 7119 1.249407 ATTTGTAAAGCGGGGCGAAA 58.751 45.000 0.00 0.00 0.00 3.46
2770 7120 0.594110 TTTGTAAAGCGGGGCGAAAG 59.406 50.000 0.00 0.00 0.00 2.62
3113 7575 2.485814 AGATTTTCTTTCTCGTGCTGCC 59.514 45.455 0.00 0.00 0.00 4.85
3159 7624 6.775142 TCCTTCCATGTCACTCAAAATAAACA 59.225 34.615 0.00 0.00 0.00 2.83
3248 7721 1.302431 TGTGACCAACATGGGAGCG 60.302 57.895 0.00 0.00 43.37 5.03
3584 8073 1.077285 GGGTTGGGTTATGGGACCG 60.077 63.158 0.00 0.00 40.75 4.79
3971 8481 9.989869 GAAGCTGAGTATAAATTGTTCTTTACC 57.010 33.333 0.00 0.00 0.00 2.85
4072 8586 2.505819 TGGAAGGCAGGGAATCTTACTC 59.494 50.000 0.00 0.00 0.00 2.59
4122 8800 5.107065 GCAAGTTGCTACTTACACTGTTAGG 60.107 44.000 20.71 0.00 42.67 2.69
4360 9041 2.795329 GTGGTCCATCAATGTCCACTT 58.205 47.619 18.76 0.00 42.30 3.16
4401 9082 7.206789 TGAACAGGGAAATCCATATGTAAGA 57.793 36.000 1.24 0.00 38.24 2.10
4445 9126 0.030504 TGGTGATTGCGTTTGCTGTG 59.969 50.000 0.00 0.00 43.34 3.66
4624 9306 5.553123 TGGAGTCGCTTACCTCAATTTTTA 58.447 37.500 0.00 0.00 0.00 1.52
4742 11032 1.063567 AGCCCTACCGAGAAGATGAGT 60.064 52.381 0.00 0.00 0.00 3.41
4794 11093 9.394767 TGATATAAGTTGCAATGATAAGTGTGT 57.605 29.630 0.59 0.00 0.00 3.72
5049 11422 2.242452 GGGATTAAGGTTGAAGCTCCCT 59.758 50.000 11.00 0.00 38.25 4.20
5160 11538 1.158434 TCGAACGGGTTTGTAATGGC 58.842 50.000 0.00 0.00 0.00 4.40
5169 11547 0.730265 TTTGTAATGGCGCCGATGAC 59.270 50.000 23.90 18.82 0.00 3.06
5219 11597 4.658786 ACCTTCTGGCGGGGGACT 62.659 66.667 12.00 0.00 36.63 3.85
5263 11641 4.334759 CAGTGCTAAAAGATGGATCCACAG 59.665 45.833 18.99 8.57 0.00 3.66
5479 11867 3.242870 CGAGAACTGCTTCAAACAAGCTT 60.243 43.478 7.78 0.00 43.38 3.74
5480 11868 4.676546 GAGAACTGCTTCAAACAAGCTTT 58.323 39.130 0.00 1.56 43.38 3.51
5540 11928 3.160870 CGAATCGCAGCAAGCTATAAC 57.839 47.619 0.00 0.00 42.61 1.89
5560 11948 1.759445 CGGGCCTGAGGGATATCTATG 59.241 57.143 5.28 0.00 33.58 2.23
5646 12064 3.756434 GGTTCGATTCCCTTTCATTCACA 59.244 43.478 0.00 0.00 0.00 3.58
5649 12067 3.871006 TCGATTCCCTTTCATTCACATCG 59.129 43.478 0.00 0.00 34.86 3.84
5723 12199 1.202533 CGGAAGTAATGAGGCGATGGT 60.203 52.381 0.00 0.00 0.00 3.55
5771 12247 6.189677 TGTTTGAAGGTTTATAAGCCATCG 57.810 37.500 19.26 0.00 30.82 3.84
5980 12478 6.994421 ATCTAATTTGTGTTGGGAAAACCT 57.006 33.333 0.00 0.00 41.11 3.50
6001 12499 8.635765 AACCTCAAAGAATATTGTTGCTCTTA 57.364 30.769 0.00 0.00 0.00 2.10
6043 12545 8.853077 TTAATATGATCTCTGCATACCCAAAG 57.147 34.615 0.00 0.00 31.61 2.77
6119 12658 0.179037 ATGCATGATCCCACGTCTGG 60.179 55.000 0.00 0.00 37.29 3.86
6241 12872 4.639310 AGCTCACTTGGCAGAAGATAATTG 59.361 41.667 1.93 0.00 0.00 2.32
6267 14120 5.367302 CCAATTTTTCATGGGTGTCAAAGT 58.633 37.500 0.00 0.00 32.87 2.66
6336 14191 4.269183 CAGAGGTCGGCTATATCATCTCT 58.731 47.826 0.00 0.00 0.00 3.10
6338 14193 5.184864 CAGAGGTCGGCTATATCATCTCTTT 59.815 44.000 0.00 0.00 0.00 2.52
6339 14194 5.777732 AGAGGTCGGCTATATCATCTCTTTT 59.222 40.000 0.00 0.00 0.00 2.27
6340 14195 6.268847 AGAGGTCGGCTATATCATCTCTTTTT 59.731 38.462 0.00 0.00 0.00 1.94
6458 14328 0.389817 TCTTCCACACGAATCCAGCG 60.390 55.000 0.00 0.00 0.00 5.18
6634 17325 1.461127 CAAAGACACAGCCTTCTACGC 59.539 52.381 0.00 0.00 0.00 4.42
6688 17379 2.992476 GGGTAGACCTTGAGGCAGA 58.008 57.895 0.00 0.00 39.32 4.26
6690 17381 0.173708 GGTAGACCTTGAGGCAGACG 59.826 60.000 0.00 0.00 39.32 4.18
6716 17407 6.758806 TTCTGTCCTTTAGAAACCTTACCT 57.241 37.500 0.00 0.00 31.62 3.08
6738 17429 0.166814 GTGTCCGCAGTTCTGCAATC 59.833 55.000 21.89 12.33 34.41 2.67
6742 17433 0.449388 CCGCAGTTCTGCAATCTTCC 59.551 55.000 21.89 0.00 34.41 3.46
6747 17438 1.625818 AGTTCTGCAATCTTCCGGAGT 59.374 47.619 3.34 0.00 0.00 3.85
6759 17450 1.629043 TCCGGAGTATGCATCTACCC 58.371 55.000 0.19 0.00 0.00 3.69
6760 17451 1.133294 TCCGGAGTATGCATCTACCCA 60.133 52.381 0.19 0.00 0.00 4.51
6763 17454 2.755650 GGAGTATGCATCTACCCAACG 58.244 52.381 0.19 0.00 0.00 4.10
6774 17465 4.451629 TCTACCCAACGATCTCAAGAAC 57.548 45.455 0.00 0.00 0.00 3.01
6797 17488 4.376413 CGACAATTTTCGTGAAGACCTCAG 60.376 45.833 5.84 0.00 33.60 3.35
6808 17499 2.182516 AGACCTCAGGGGAATCGAAT 57.817 50.000 0.00 0.00 38.76 3.34
6815 17506 0.676736 AGGGGAATCGAATCTCGCTC 59.323 55.000 0.00 0.00 40.21 5.03
6816 17507 0.389391 GGGGAATCGAATCTCGCTCA 59.611 55.000 0.00 0.00 40.21 4.26
6832 17523 2.605823 CGCTCAGGTGGAATCGTAGATC 60.606 54.545 0.00 0.00 45.12 2.75
6835 17526 4.461081 GCTCAGGTGGAATCGTAGATCTAT 59.539 45.833 5.57 0.00 45.12 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.217200 TCTAGTATCAAATAGCCATTGTCACC 58.783 38.462 0.00 0.00 0.00 4.02
24 25 7.445121 CCTCTAGTATCAAATAGCCATTGTCA 58.555 38.462 0.00 0.00 0.00 3.58
98 99 1.217057 ATCACCAGCAGTCCCCCATT 61.217 55.000 0.00 0.00 0.00 3.16
174 175 0.948141 TCACGTTGTCGATGCATGCA 60.948 50.000 25.04 25.04 40.62 3.96
306 333 5.996219 TCATCTGTTTCAATAACAACACGG 58.004 37.500 0.00 0.00 0.00 4.94
434 472 3.194968 TGACGGAGGGAGTAGTTCATTTC 59.805 47.826 0.00 0.00 0.00 2.17
445 483 1.616865 TGTAAACTGTGACGGAGGGAG 59.383 52.381 0.00 0.00 0.00 4.30
446 484 1.707106 TGTAAACTGTGACGGAGGGA 58.293 50.000 0.00 0.00 0.00 4.20
447 485 2.224209 ACTTGTAAACTGTGACGGAGGG 60.224 50.000 0.00 0.00 0.00 4.30
448 486 3.057734 GACTTGTAAACTGTGACGGAGG 58.942 50.000 0.00 0.00 0.00 4.30
449 487 3.057734 GGACTTGTAAACTGTGACGGAG 58.942 50.000 0.00 0.00 0.00 4.63
450 488 2.696707 AGGACTTGTAAACTGTGACGGA 59.303 45.455 0.00 0.00 0.00 4.69
452 490 3.667261 CGTAGGACTTGTAAACTGTGACG 59.333 47.826 0.00 0.00 0.00 4.35
453 491 3.427863 GCGTAGGACTTGTAAACTGTGAC 59.572 47.826 0.00 0.00 0.00 3.67
454 492 3.645884 GCGTAGGACTTGTAAACTGTGA 58.354 45.455 0.00 0.00 0.00 3.58
456 494 2.035066 ACGCGTAGGACTTGTAAACTGT 59.965 45.455 11.67 0.00 0.00 3.55
468 514 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
470 516 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
472 518 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
479 525 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
480 526 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
589 1680 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
590 1681 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
591 1682 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
594 1685 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
605 1696 3.604875 TCCCTAGGTCGTCAATTTGAC 57.395 47.619 17.76 17.76 43.65 3.18
614 1705 2.550101 GCGCGTATCCCTAGGTCGT 61.550 63.158 8.43 0.00 0.00 4.34
616 1707 1.007618 GTGCGCGTATCCCTAGGTC 60.008 63.158 8.43 0.00 0.00 3.85
624 1715 1.352114 TTACAAGGTGTGCGCGTATC 58.648 50.000 8.43 0.41 0.00 2.24
632 1723 5.010112 TCTCTCTCTCAGTTTACAAGGTGTG 59.990 44.000 0.00 0.00 0.00 3.82
634 1725 5.336372 CCTCTCTCTCTCAGTTTACAAGGTG 60.336 48.000 0.00 0.00 0.00 4.00
635 1726 4.770010 CCTCTCTCTCTCAGTTTACAAGGT 59.230 45.833 0.00 0.00 0.00 3.50
636 1727 4.159506 CCCTCTCTCTCTCAGTTTACAAGG 59.840 50.000 0.00 0.00 0.00 3.61
658 1749 7.609056 TGCCCGAAATAAGTTATATCTACTCC 58.391 38.462 0.00 0.00 0.00 3.85
660 1751 9.841295 TTTTGCCCGAAATAAGTTATATCTACT 57.159 29.630 0.00 0.00 0.00 2.57
791 2817 1.685224 GAACCAGCCTGGACCATCA 59.315 57.895 19.90 0.00 40.96 3.07
796 2822 2.435059 GAGCGAACCAGCCTGGAC 60.435 66.667 19.90 10.05 40.96 4.02
797 2823 2.515979 TTGAGCGAACCAGCCTGGA 61.516 57.895 19.90 0.00 40.96 3.86
810 2853 3.575506 TGGACCATCCATGTTGAGC 57.424 52.632 0.00 0.00 42.67 4.26
864 2946 0.680618 TTGCATTTGCCCTTCTGGTG 59.319 50.000 0.00 0.00 41.18 4.17
871 2954 2.876892 GCTGGATTTTTGCATTTGCCCT 60.877 45.455 0.00 0.00 41.18 5.19
892 2975 3.432252 GTCATCTTGTAACAAGTCCGGTG 59.568 47.826 0.00 0.00 0.00 4.94
893 2976 3.070446 TGTCATCTTGTAACAAGTCCGGT 59.930 43.478 0.00 0.00 0.00 5.28
895 2978 6.961359 TTATGTCATCTTGTAACAAGTCCG 57.039 37.500 0.00 0.00 0.00 4.79
900 2983 8.109705 ACTGCATTTATGTCATCTTGTAACAA 57.890 30.769 0.00 0.00 0.00 2.83
901 2984 7.686438 ACTGCATTTATGTCATCTTGTAACA 57.314 32.000 0.00 0.00 0.00 2.41
903 2986 8.575589 ACAAACTGCATTTATGTCATCTTGTAA 58.424 29.630 0.00 0.00 0.00 2.41
904 2987 8.109705 ACAAACTGCATTTATGTCATCTTGTA 57.890 30.769 0.00 0.00 0.00 2.41
905 2988 6.985117 ACAAACTGCATTTATGTCATCTTGT 58.015 32.000 0.00 0.00 0.00 3.16
906 2989 7.595875 TCAACAAACTGCATTTATGTCATCTTG 59.404 33.333 0.00 0.00 0.00 3.02
936 4589 5.858381 TGCTTATCAATACCATCTGTCTCC 58.142 41.667 0.00 0.00 0.00 3.71
946 4599 3.254166 CCACTGCCATGCTTATCAATACC 59.746 47.826 0.00 0.00 0.00 2.73
948 4601 4.136796 GTCCACTGCCATGCTTATCAATA 58.863 43.478 0.00 0.00 0.00 1.90
949 4602 2.954318 GTCCACTGCCATGCTTATCAAT 59.046 45.455 0.00 0.00 0.00 2.57
950 4603 2.368439 GTCCACTGCCATGCTTATCAA 58.632 47.619 0.00 0.00 0.00 2.57
951 4604 1.743431 CGTCCACTGCCATGCTTATCA 60.743 52.381 0.00 0.00 0.00 2.15
952 4605 0.940126 CGTCCACTGCCATGCTTATC 59.060 55.000 0.00 0.00 0.00 1.75
981 4645 2.012673 CGAAAATCTCCTTCTGGGCAG 58.987 52.381 0.00 0.00 34.39 4.85
982 4646 1.950484 GCGAAAATCTCCTTCTGGGCA 60.950 52.381 0.00 0.00 34.39 5.36
983 4647 0.735471 GCGAAAATCTCCTTCTGGGC 59.265 55.000 0.00 0.00 34.39 5.36
985 4649 1.929836 CTCGCGAAAATCTCCTTCTGG 59.070 52.381 11.33 0.00 0.00 3.86
986 4650 1.929836 CCTCGCGAAAATCTCCTTCTG 59.070 52.381 11.33 0.00 0.00 3.02
987 4651 1.740718 GCCTCGCGAAAATCTCCTTCT 60.741 52.381 11.33 0.00 0.00 2.85
988 4652 0.653114 GCCTCGCGAAAATCTCCTTC 59.347 55.000 11.33 0.00 0.00 3.46
990 4654 1.153349 GGCCTCGCGAAAATCTCCT 60.153 57.895 11.33 0.00 0.00 3.69
991 4655 2.526120 CGGCCTCGCGAAAATCTCC 61.526 63.158 11.33 4.17 0.00 3.71
992 4656 2.526120 CCGGCCTCGCGAAAATCTC 61.526 63.158 11.33 0.00 34.56 2.75
993 4657 2.511600 CCGGCCTCGCGAAAATCT 60.512 61.111 11.33 0.00 34.56 2.40
1356 5102 0.250640 CCCTGTTCAGCTGTGCTTCT 60.251 55.000 14.67 0.00 36.40 2.85
1379 5420 0.377203 CAAATTAAGCGCCGGGAGAC 59.623 55.000 2.29 0.00 0.00 3.36
1449 5530 2.061773 CTAGCAGTCACTTTCACCGTG 58.938 52.381 0.00 0.00 0.00 4.94
1523 5658 7.217200 AGACTCAAATGTTGTTAGCTAGACAA 58.783 34.615 13.87 13.87 34.83 3.18
1524 5659 6.759272 AGACTCAAATGTTGTTAGCTAGACA 58.241 36.000 8.51 8.51 0.00 3.41
1553 5691 8.649973 AAATAGCACTAGTATCTTACTGTTGC 57.350 34.615 0.00 11.48 43.05 4.17
1928 6270 4.338400 TCCAGTAGACCTACACAATGATCG 59.662 45.833 9.56 0.00 38.48 3.69
1937 6279 3.576982 CACCAGTTTCCAGTAGACCTACA 59.423 47.826 9.56 0.00 38.48 2.74
2013 6355 6.161170 ACCCTCCCTTCTTTGATTTATCTGAT 59.839 38.462 0.00 0.00 0.00 2.90
2052 6394 4.141883 GCAATGTTGAGCACTGCG 57.858 55.556 0.00 0.00 40.59 5.18
2121 6463 1.688735 TCATCCCTCCAGACAATAGCG 59.311 52.381 0.00 0.00 0.00 4.26
2339 6689 1.196104 TCCGGTCACCCTTTCGGAAT 61.196 55.000 0.00 0.00 46.93 3.01
2462 6812 2.219458 CTCATGCGATTGCCAATCTCT 58.781 47.619 15.04 0.00 41.78 3.10
2510 6860 1.714794 CTTGCTACAGTCGAACCTGG 58.285 55.000 7.82 0.00 36.75 4.45
2642 6992 2.888834 GCTCAACAAGCCCAAAGAAA 57.111 45.000 0.00 0.00 45.92 2.52
2652 7002 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
2653 7003 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
2654 7004 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
2655 7005 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
2665 7015 0.324943 TACAAGGTTCTGCTGAGGGC 59.675 55.000 0.00 0.00 42.22 5.19
2666 7016 1.625818 AGTACAAGGTTCTGCTGAGGG 59.374 52.381 0.00 0.00 0.00 4.30
2667 7017 3.007398 AGAAGTACAAGGTTCTGCTGAGG 59.993 47.826 0.00 0.00 31.63 3.86
2668 7018 4.264460 AGAAGTACAAGGTTCTGCTGAG 57.736 45.455 0.00 0.00 31.63 3.35
2669 7019 4.141711 ACAAGAAGTACAAGGTTCTGCTGA 60.142 41.667 0.00 0.00 33.21 4.26
2670 7020 4.130118 ACAAGAAGTACAAGGTTCTGCTG 58.870 43.478 0.00 0.00 33.21 4.41
2671 7021 4.423625 ACAAGAAGTACAAGGTTCTGCT 57.576 40.909 0.00 0.00 33.21 4.24
2672 7022 4.335594 ACAACAAGAAGTACAAGGTTCTGC 59.664 41.667 0.00 0.00 33.21 4.26
2673 7023 5.354234 ACACAACAAGAAGTACAAGGTTCTG 59.646 40.000 0.00 0.00 33.21 3.02
2674 7024 5.354234 CACACAACAAGAAGTACAAGGTTCT 59.646 40.000 0.00 0.00 34.37 3.01
2675 7025 5.123344 ACACACAACAAGAAGTACAAGGTTC 59.877 40.000 0.00 0.00 0.00 3.62
2676 7026 5.007682 ACACACAACAAGAAGTACAAGGTT 58.992 37.500 0.00 0.00 0.00 3.50
2677 7027 4.394920 CACACACAACAAGAAGTACAAGGT 59.605 41.667 0.00 0.00 0.00 3.50
2678 7028 4.394920 ACACACACAACAAGAAGTACAAGG 59.605 41.667 0.00 0.00 0.00 3.61
2679 7029 5.106712 ACACACACACAACAAGAAGTACAAG 60.107 40.000 0.00 0.00 0.00 3.16
2680 7030 4.757657 ACACACACACAACAAGAAGTACAA 59.242 37.500 0.00 0.00 0.00 2.41
2681 7031 4.153296 CACACACACACAACAAGAAGTACA 59.847 41.667 0.00 0.00 0.00 2.90
2682 7032 4.153475 ACACACACACACAACAAGAAGTAC 59.847 41.667 0.00 0.00 0.00 2.73
2683 7033 4.153296 CACACACACACACAACAAGAAGTA 59.847 41.667 0.00 0.00 0.00 2.24
2684 7034 3.058293 CACACACACACACAACAAGAAGT 60.058 43.478 0.00 0.00 0.00 3.01
2685 7035 3.491356 CACACACACACACAACAAGAAG 58.509 45.455 0.00 0.00 0.00 2.85
2686 7036 2.227626 CCACACACACACACAACAAGAA 59.772 45.455 0.00 0.00 0.00 2.52
2687 7037 1.809547 CCACACACACACACAACAAGA 59.190 47.619 0.00 0.00 0.00 3.02
2688 7038 1.539388 ACCACACACACACACAACAAG 59.461 47.619 0.00 0.00 0.00 3.16
2689 7039 1.268079 CACCACACACACACACAACAA 59.732 47.619 0.00 0.00 0.00 2.83
2690 7040 0.877743 CACCACACACACACACAACA 59.122 50.000 0.00 0.00 0.00 3.33
2691 7041 1.160989 TCACCACACACACACACAAC 58.839 50.000 0.00 0.00 0.00 3.32
2692 7042 1.537638 GTTCACCACACACACACACAA 59.462 47.619 0.00 0.00 0.00 3.33
2693 7043 1.160989 GTTCACCACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
2694 7044 1.396996 GAGTTCACCACACACACACAC 59.603 52.381 0.00 0.00 0.00 3.82
2695 7045 1.732941 GAGTTCACCACACACACACA 58.267 50.000 0.00 0.00 0.00 3.72
2696 7046 0.650512 CGAGTTCACCACACACACAC 59.349 55.000 0.00 0.00 0.00 3.82
2697 7047 0.248012 ACGAGTTCACCACACACACA 59.752 50.000 0.00 0.00 0.00 3.72
2698 7048 0.650512 CACGAGTTCACCACACACAC 59.349 55.000 0.00 0.00 0.00 3.82
2699 7049 0.248012 ACACGAGTTCACCACACACA 59.752 50.000 0.00 0.00 0.00 3.72
2700 7050 1.365699 AACACGAGTTCACCACACAC 58.634 50.000 0.00 0.00 30.46 3.82
2701 7051 1.735018 CAAACACGAGTTCACCACACA 59.265 47.619 0.00 0.00 36.84 3.72
2702 7052 1.063469 CCAAACACGAGTTCACCACAC 59.937 52.381 0.00 0.00 36.84 3.82
2703 7053 1.339247 ACCAAACACGAGTTCACCACA 60.339 47.619 0.00 0.00 36.84 4.17
2704 7054 1.375551 ACCAAACACGAGTTCACCAC 58.624 50.000 0.00 0.00 36.84 4.16
2705 7055 2.168936 AGTACCAAACACGAGTTCACCA 59.831 45.455 0.00 0.00 36.84 4.17
2706 7056 2.798847 GAGTACCAAACACGAGTTCACC 59.201 50.000 0.00 0.00 36.84 4.02
2707 7057 2.470257 CGAGTACCAAACACGAGTTCAC 59.530 50.000 0.00 0.00 43.84 3.18
2708 7058 2.099592 ACGAGTACCAAACACGAGTTCA 59.900 45.455 0.00 0.00 43.84 3.18
2709 7059 2.735823 ACGAGTACCAAACACGAGTTC 58.264 47.619 0.00 0.00 43.84 3.01
2710 7060 2.861935 CAACGAGTACCAAACACGAGTT 59.138 45.455 2.13 0.00 43.84 3.01
2711 7061 2.466846 CAACGAGTACCAAACACGAGT 58.533 47.619 2.13 0.00 43.84 4.18
2712 7062 1.191647 GCAACGAGTACCAAACACGAG 59.808 52.381 2.13 0.00 43.84 4.18
2713 7063 1.202440 AGCAACGAGTACCAAACACGA 60.202 47.619 2.13 0.00 43.84 4.35
2714 7064 1.214367 AGCAACGAGTACCAAACACG 58.786 50.000 0.00 0.00 46.13 4.49
2715 7065 2.353579 ACAAGCAACGAGTACCAAACAC 59.646 45.455 0.00 0.00 0.00 3.32
2716 7066 2.353269 CACAAGCAACGAGTACCAAACA 59.647 45.455 0.00 0.00 0.00 2.83
2717 7067 2.286772 CCACAAGCAACGAGTACCAAAC 60.287 50.000 0.00 0.00 0.00 2.93
2718 7068 1.944024 CCACAAGCAACGAGTACCAAA 59.056 47.619 0.00 0.00 0.00 3.28
2719 7069 1.588674 CCACAAGCAACGAGTACCAA 58.411 50.000 0.00 0.00 0.00 3.67
2720 7070 0.882927 GCCACAAGCAACGAGTACCA 60.883 55.000 0.00 0.00 42.97 3.25
2721 7071 1.866925 GCCACAAGCAACGAGTACC 59.133 57.895 0.00 0.00 42.97 3.34
2722 7072 1.491563 CGCCACAAGCAACGAGTAC 59.508 57.895 0.00 0.00 44.04 2.73
2723 7073 1.666553 CCGCCACAAGCAACGAGTA 60.667 57.895 0.00 0.00 44.04 2.59
2724 7074 2.972505 CCGCCACAAGCAACGAGT 60.973 61.111 0.00 0.00 44.04 4.18
2725 7075 2.058829 AAACCGCCACAAGCAACGAG 62.059 55.000 0.00 0.00 44.04 4.18
2726 7076 2.115911 AAACCGCCACAAGCAACGA 61.116 52.632 0.00 0.00 44.04 3.85
2727 7077 1.943693 CAAACCGCCACAAGCAACG 60.944 57.895 0.00 0.00 44.04 4.10
2728 7078 2.237066 GCAAACCGCCACAAGCAAC 61.237 57.895 0.00 0.00 44.04 4.17
2729 7079 1.954362 AAGCAAACCGCCACAAGCAA 61.954 50.000 0.00 0.00 44.04 3.91
2730 7080 1.954362 AAAGCAAACCGCCACAAGCA 61.954 50.000 0.00 0.00 44.04 3.91
2731 7081 0.031449 TAAAGCAAACCGCCACAAGC 59.969 50.000 0.00 0.00 44.04 4.01
2732 7082 2.723124 ATAAAGCAAACCGCCACAAG 57.277 45.000 0.00 0.00 44.04 3.16
2733 7083 3.126831 CAAATAAAGCAAACCGCCACAA 58.873 40.909 0.00 0.00 44.04 3.33
2734 7084 2.101582 ACAAATAAAGCAAACCGCCACA 59.898 40.909 0.00 0.00 44.04 4.17
2735 7085 2.749776 ACAAATAAAGCAAACCGCCAC 58.250 42.857 0.00 0.00 44.04 5.01
2736 7086 4.585955 TTACAAATAAAGCAAACCGCCA 57.414 36.364 0.00 0.00 44.04 5.69
2737 7087 5.509605 CTTTACAAATAAAGCAAACCGCC 57.490 39.130 0.00 0.00 40.60 6.13
2746 7096 2.420722 TCGCCCCGCTTTACAAATAAAG 59.579 45.455 2.99 2.99 46.95 1.85
2747 7097 2.434428 TCGCCCCGCTTTACAAATAAA 58.566 42.857 0.00 0.00 0.00 1.40
2748 7098 2.110901 TCGCCCCGCTTTACAAATAA 57.889 45.000 0.00 0.00 0.00 1.40
2749 7099 2.110901 TTCGCCCCGCTTTACAAATA 57.889 45.000 0.00 0.00 0.00 1.40
2750 7100 1.201414 CTTTCGCCCCGCTTTACAAAT 59.799 47.619 0.00 0.00 0.00 2.32
2751 7101 0.594110 CTTTCGCCCCGCTTTACAAA 59.406 50.000 0.00 0.00 0.00 2.83
2752 7102 1.858372 GCTTTCGCCCCGCTTTACAA 61.858 55.000 0.00 0.00 0.00 2.41
2753 7103 2.329614 GCTTTCGCCCCGCTTTACA 61.330 57.895 0.00 0.00 0.00 2.41
2754 7104 2.483745 GCTTTCGCCCCGCTTTAC 59.516 61.111 0.00 0.00 0.00 2.01
2764 7114 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
2766 7116 9.850628 ACTAAATAATTACCGAAAAAGGCTTTC 57.149 29.630 13.76 0.41 33.69 2.62
2803 7248 8.115490 AGCTGAGCAAATTAAGTTACTGAAAT 57.885 30.769 7.39 0.00 0.00 2.17
2904 7361 9.202273 TCATGCAAAAAGGTATAAATGAAACAC 57.798 29.630 0.00 0.00 0.00 3.32
2977 7439 7.016361 ACACGGCTGAAGAATATAATTTGAC 57.984 36.000 0.00 0.00 0.00 3.18
3113 7575 0.664761 CATTTGCTGCATACCTCCCG 59.335 55.000 1.84 0.00 0.00 5.14
3159 7624 6.512415 CGAAAAGAAAGCATCTGAACAGAGTT 60.512 38.462 10.26 1.87 41.33 3.01
3248 7721 2.821969 ACCTGCAAATCCAAGACATGTC 59.178 45.455 18.47 18.47 0.00 3.06
3963 8473 1.083489 CGAAGCGCATGGGTAAAGAA 58.917 50.000 11.47 0.00 0.00 2.52
3971 8481 1.599071 ACATTATCACGAAGCGCATGG 59.401 47.619 11.47 0.05 0.00 3.66
4072 8586 0.984230 TTGGTCCAGTCTAGCCCTTG 59.016 55.000 0.00 0.00 0.00 3.61
4122 8800 4.620184 GCTTGTGATGAAGTTGAATGCTTC 59.380 41.667 0.00 0.00 41.81 3.86
4360 9041 4.888917 TGTTCATCGAGTATGACAAACCA 58.111 39.130 0.00 0.00 44.42 3.67
4624 9306 9.683069 CTTCATAATTTTGTCAAGCAGTTTAGT 57.317 29.630 0.00 0.00 0.00 2.24
4742 11032 6.005823 AGCACAATAGCATGCCTAAATCATA 58.994 36.000 15.66 0.00 43.12 2.15
5049 11422 8.620116 TGACATCATACTGAAAACAATGAAGA 57.380 30.769 0.00 0.00 32.47 2.87
5169 11547 2.164624 AGCTACTGTTTCTAGCAGACCG 59.835 50.000 3.40 0.00 39.36 4.79
5219 11597 5.104527 ACTGCCAATATAGCCAGTTGTTCTA 60.105 40.000 0.00 0.00 0.00 2.10
5263 11641 7.655137 TCTTCAGAAGATTTGCATCGCATGC 62.655 44.000 8.95 7.91 43.90 4.06
5479 11867 1.132527 TCCCTCAGGACCCTTCTCAAA 60.133 52.381 0.00 0.00 37.19 2.69
5480 11868 0.491823 TCCCTCAGGACCCTTCTCAA 59.508 55.000 0.00 0.00 37.19 3.02
5540 11928 1.759445 CATAGATATCCCTCAGGCCCG 59.241 57.143 0.00 0.00 0.00 6.13
5646 12064 2.193127 TGAATCTACACCCCCAACGAT 58.807 47.619 0.00 0.00 0.00 3.73
5649 12067 4.638865 GTGTTATGAATCTACACCCCCAAC 59.361 45.833 0.00 0.00 36.93 3.77
5723 12199 5.245531 ACAGAGTGATCCGATTTTAGCAAA 58.754 37.500 0.00 0.00 0.00 3.68
5799 12280 7.870509 ATGCAGCTCATCTTGTCTTATAAAA 57.129 32.000 0.00 0.00 0.00 1.52
5960 12458 6.546428 TTGAGGTTTTCCCAACACAAATTA 57.454 33.333 0.00 0.00 41.86 1.40
6043 12545 5.181748 AGCTCATGTCACAAAGGATAGTTC 58.818 41.667 0.00 0.00 0.00 3.01
6170 12795 2.509336 GGCGTGCGTGCATAGAGT 60.509 61.111 0.00 0.00 36.28 3.24
6171 12796 3.264897 GGGCGTGCGTGCATAGAG 61.265 66.667 0.00 0.00 36.28 2.43
6241 12872 3.006752 TGACACCCATGAAAAATTGGCTC 59.993 43.478 0.00 0.00 0.00 4.70
6267 14120 5.600484 TGATTTAAGCTTTTGACCCCTTCAA 59.400 36.000 3.20 0.00 42.83 2.69
6338 14193 9.162764 GTTGAGAGTGGTAAGCTATATCAAAAA 57.837 33.333 0.00 0.00 0.00 1.94
6339 14194 8.540388 AGTTGAGAGTGGTAAGCTATATCAAAA 58.460 33.333 0.00 0.00 0.00 2.44
6340 14195 7.981789 CAGTTGAGAGTGGTAAGCTATATCAAA 59.018 37.037 0.00 0.00 0.00 2.69
6341 14196 7.124298 ACAGTTGAGAGTGGTAAGCTATATCAA 59.876 37.037 0.00 0.00 0.00 2.57
6342 14197 6.607600 ACAGTTGAGAGTGGTAAGCTATATCA 59.392 38.462 0.00 0.00 0.00 2.15
6343 14198 6.920758 CACAGTTGAGAGTGGTAAGCTATATC 59.079 42.308 0.00 0.00 32.24 1.63
6344 14199 6.381420 ACACAGTTGAGAGTGGTAAGCTATAT 59.619 38.462 0.00 0.00 39.99 0.86
6345 14200 5.715279 ACACAGTTGAGAGTGGTAAGCTATA 59.285 40.000 0.00 0.00 39.99 1.31
6346 14201 4.528596 ACACAGTTGAGAGTGGTAAGCTAT 59.471 41.667 0.00 0.00 39.99 2.97
6347 14202 3.895656 ACACAGTTGAGAGTGGTAAGCTA 59.104 43.478 0.00 0.00 39.99 3.32
6348 14203 2.700897 ACACAGTTGAGAGTGGTAAGCT 59.299 45.455 0.00 0.00 39.99 3.74
6349 14204 2.802816 CACACAGTTGAGAGTGGTAAGC 59.197 50.000 0.00 0.00 39.99 3.09
6350 14205 3.804325 CACACACAGTTGAGAGTGGTAAG 59.196 47.826 0.00 0.00 39.99 2.34
6351 14206 3.792401 CACACACAGTTGAGAGTGGTAA 58.208 45.455 0.00 0.00 39.99 2.85
6352 14207 2.483013 GCACACACAGTTGAGAGTGGTA 60.483 50.000 8.56 0.00 39.99 3.25
6353 14208 1.743772 GCACACACAGTTGAGAGTGGT 60.744 52.381 8.56 0.00 39.99 4.16
6354 14209 0.940126 GCACACACAGTTGAGAGTGG 59.060 55.000 8.56 0.00 39.99 4.00
6355 14210 0.940126 GGCACACACAGTTGAGAGTG 59.060 55.000 3.56 3.56 41.40 3.51
6356 14211 0.541392 TGGCACACACAGTTGAGAGT 59.459 50.000 0.00 0.00 0.00 3.24
6357 14212 1.667236 TTGGCACACACAGTTGAGAG 58.333 50.000 0.00 0.00 39.29 3.20
6358 14213 2.121291 TTTGGCACACACAGTTGAGA 57.879 45.000 0.00 0.00 39.29 3.27
6359 14214 3.610114 GCTATTTGGCACACACAGTTGAG 60.610 47.826 0.00 0.00 39.29 3.02
6360 14215 2.293122 GCTATTTGGCACACACAGTTGA 59.707 45.455 0.00 0.00 39.29 3.18
6361 14216 2.294233 AGCTATTTGGCACACACAGTTG 59.706 45.455 0.00 0.00 39.29 3.16
6362 14217 2.294233 CAGCTATTTGGCACACACAGTT 59.706 45.455 0.00 0.00 39.29 3.16
6363 14218 1.881973 CAGCTATTTGGCACACACAGT 59.118 47.619 0.00 0.00 39.29 3.55
6458 14328 7.081976 GTGCTTAATCTACTTCTAGCTAGCTC 58.918 42.308 23.26 0.90 0.00 4.09
6634 17325 1.269726 ACATTTTGTGGCCAAAGCTCG 60.270 47.619 7.24 0.00 41.37 5.03
6672 17363 0.173708 CCGTCTGCCTCAAGGTCTAC 59.826 60.000 0.00 0.00 37.57 2.59
6705 17396 2.685100 CGGACACTCAGGTAAGGTTTC 58.315 52.381 0.00 0.00 0.00 2.78
6713 17404 1.115930 AGAACTGCGGACACTCAGGT 61.116 55.000 0.00 0.00 34.76 4.00
6738 17429 2.028930 GGGTAGATGCATACTCCGGAAG 60.029 54.545 5.23 2.09 0.00 3.46
6742 17433 2.755650 GTTGGGTAGATGCATACTCCG 58.244 52.381 0.00 0.00 0.00 4.63
6747 17438 3.895041 TGAGATCGTTGGGTAGATGCATA 59.105 43.478 0.00 0.00 0.00 3.14
6759 17450 4.910746 ATTGTCGTTCTTGAGATCGTTG 57.089 40.909 10.28 0.00 38.15 4.10
6760 17451 5.924475 AAATTGTCGTTCTTGAGATCGTT 57.076 34.783 10.28 0.00 38.15 3.85
6774 17465 3.493129 TGAGGTCTTCACGAAAATTGTCG 59.507 43.478 16.50 16.50 46.54 4.35
6792 17483 1.000283 CGAGATTCGATTCCCCTGAGG 60.000 57.143 3.75 0.00 43.74 3.86
6797 17488 0.389391 TGAGCGAGATTCGATTCCCC 59.611 55.000 2.20 0.00 39.25 4.81
6808 17499 0.965866 ACGATTCCACCTGAGCGAGA 60.966 55.000 0.00 0.00 0.00 4.04
6815 17506 5.475220 AGACATAGATCTACGATTCCACCTG 59.525 44.000 4.10 0.00 0.00 4.00
6816 17507 5.636123 AGACATAGATCTACGATTCCACCT 58.364 41.667 4.10 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.