Multiple sequence alignment - TraesCS7A01G092800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G092800 chr7A 100.000 2815 0 0 1 2815 56323075 56325889 0.000000e+00 5199.0
1 TraesCS7A01G092800 chr7A 95.345 2041 64 19 562 2577 56448623 56450657 0.000000e+00 3214.0
2 TraesCS7A01G092800 chr7A 95.016 622 22 7 1879 2498 56245920 56246534 0.000000e+00 968.0
3 TraesCS7A01G092800 chr7A 93.760 609 31 6 1220 1827 56245229 56245831 0.000000e+00 907.0
4 TraesCS7A01G092800 chr7A 86.364 638 63 15 1870 2499 56739766 56740387 0.000000e+00 675.0
5 TraesCS7A01G092800 chr7A 80.419 955 113 38 772 1688 55926036 55926954 0.000000e+00 660.0
6 TraesCS7A01G092800 chr7A 82.301 678 89 26 992 1652 56235386 56236049 2.450000e-155 558.0
7 TraesCS7A01G092800 chr7A 94.667 300 11 1 15 309 56434737 56435036 7.100000e-126 460.0
8 TraesCS7A01G092800 chr7A 77.946 857 94 48 1073 1880 55918369 55919179 5.530000e-122 448.0
9 TraesCS7A01G092800 chr7A 87.634 372 39 5 1313 1680 56975059 56975427 2.590000e-115 425.0
10 TraesCS7A01G092800 chr7A 98.745 239 3 0 2577 2815 469964009 469963771 2.590000e-115 425.0
11 TraesCS7A01G092800 chr7A 97.942 243 4 1 2573 2815 165501442 165501201 1.210000e-113 420.0
12 TraesCS7A01G092800 chr7A 79.331 658 84 32 1271 1883 55922953 55923603 5.610000e-112 414.0
13 TraesCS7A01G092800 chr7A 89.068 311 28 6 862 1167 55930196 55930505 5.690000e-102 381.0
14 TraesCS7A01G092800 chr7A 84.770 348 39 11 1313 1652 55930617 55930958 1.250000e-88 337.0
15 TraesCS7A01G092800 chr7A 81.203 399 54 15 1289 1681 56738825 56739208 4.560000e-78 302.0
16 TraesCS7A01G092800 chr7A 80.282 213 32 8 84 292 670250341 670250135 4.860000e-33 152.0
17 TraesCS7A01G092800 chr7A 80.282 213 32 8 84 292 670254398 670254192 4.860000e-33 152.0
18 TraesCS7A01G092800 chr7A 81.977 172 28 3 84 253 670248256 670248086 2.920000e-30 143.0
19 TraesCS7A01G092800 chr7A 82.317 164 26 3 92 253 670256859 670256697 3.780000e-29 139.0
20 TraesCS7A01G092800 chr7A 77.600 250 42 9 46 291 670258805 670258566 3.780000e-29 139.0
21 TraesCS7A01G092800 chr7A 82.353 153 23 3 839 991 56930410 56930558 2.280000e-26 130.0
22 TraesCS7A01G092800 chr7A 81.699 153 23 4 839 991 56961941 56962088 3.810000e-24 122.0
23 TraesCS7A01G092800 chr7A 89.286 84 6 3 2495 2575 56741616 56741699 4.960000e-18 102.0
24 TraesCS7A01G092800 chr7A 76.884 199 32 9 1696 1882 56431439 56431635 1.780000e-17 100.0
25 TraesCS7A01G092800 chr7A 100.000 28 0 0 591 618 56323611 56323638 5.000000e-03 52.8
26 TraesCS7A01G092800 chr7A 100.000 28 0 0 537 564 56323665 56323692 5.000000e-03 52.8
27 TraesCS7A01G092800 chr7A 100.000 28 0 0 537 564 56448652 56448679 5.000000e-03 52.8
28 TraesCS7A01G092800 chr7D 84.530 989 106 26 714 1680 53529443 53530406 0.000000e+00 935.0
29 TraesCS7A01G092800 chr7D 84.326 772 72 35 933 1680 53564719 53565465 0.000000e+00 710.0
30 TraesCS7A01G092800 chr7D 81.963 438 57 12 1253 1680 53606304 53606729 4.460000e-93 351.0
31 TraesCS7A01G092800 chr7D 77.918 634 81 42 1073 1679 53524557 53525158 9.660000e-90 340.0
32 TraesCS7A01G092800 chr7D 82.828 396 45 19 1302 1678 53539429 53539820 1.620000e-87 333.0
33 TraesCS7A01G092800 chr7D 81.948 421 50 20 1253 1651 53699979 53700395 1.620000e-87 333.0
34 TraesCS7A01G092800 chr7D 81.796 412 61 14 1253 1654 53708170 53708577 1.620000e-87 333.0
35 TraesCS7A01G092800 chr7D 81.618 408 51 17 1271 1667 53577828 53578222 1.630000e-82 316.0
36 TraesCS7A01G092800 chr7D 83.714 350 36 14 1313 1652 53558515 53558853 7.570000e-81 311.0
37 TraesCS7A01G092800 chr7D 94.118 204 11 1 338 540 539382086 539381883 2.720000e-80 309.0
38 TraesCS7A01G092800 chr7D 91.189 227 16 2 1465 1688 53705217 53705442 3.520000e-79 305.0
39 TraesCS7A01G092800 chr7D 88.142 253 22 8 295 540 593343170 593342919 7.630000e-76 294.0
40 TraesCS7A01G092800 chr7D 84.167 240 32 5 2259 2498 53566041 53566274 7.840000e-56 228.0
41 TraesCS7A01G092800 chr7D 93.750 112 7 0 1677 1788 53565509 53565620 4.820000e-38 169.0
42 TraesCS7A01G092800 chr7D 83.516 91 11 4 1265 1353 53705046 53705134 6.460000e-12 82.4
43 TraesCS7A01G092800 chr4A 82.390 954 97 42 775 1688 668284788 668285710 0.000000e+00 765.0
44 TraesCS7A01G092800 chr4A 81.881 436 47 28 1265 1688 668306267 668306682 3.470000e-89 339.0
45 TraesCS7A01G092800 chr4A 80.684 497 30 22 706 1167 668287640 668288105 2.700000e-85 326.0
46 TraesCS7A01G092800 chr4A 94.554 202 9 2 341 540 208931429 208931228 7.570000e-81 311.0
47 TraesCS7A01G092800 chr4A 95.808 167 3 3 1882 2047 668307004 668307167 1.660000e-67 267.0
48 TraesCS7A01G092800 chr4A 85.714 238 14 11 933 1167 668305988 668306208 1.690000e-57 233.0
49 TraesCS7A01G092800 chr4A 84.956 226 27 3 2205 2430 668307188 668307406 3.650000e-54 222.0
50 TraesCS7A01G092800 chr4A 78.512 363 50 22 839 1184 668336702 668337053 2.200000e-51 213.0
51 TraesCS7A01G092800 chr4A 85.625 160 20 2 2104 2263 150653466 150653310 6.240000e-37 165.0
52 TraesCS7A01G092800 chr1A 98.374 246 4 0 2570 2815 236964396 236964641 1.550000e-117 433.0
53 TraesCS7A01G092800 chr1A 94.472 199 10 1 343 540 420381403 420381205 3.520000e-79 305.0
54 TraesCS7A01G092800 chrUn 98.755 241 3 0 2575 2815 258243588 258243348 2.000000e-116 429.0
55 TraesCS7A01G092800 chrUn 86.063 287 26 5 726 998 82382439 82382153 2.120000e-76 296.0
56 TraesCS7A01G092800 chr6A 98.745 239 3 0 2577 2815 486860433 486860671 2.590000e-115 425.0
57 TraesCS7A01G092800 chr6A 95.000 200 8 2 343 540 233324416 233324217 2.110000e-81 313.0
58 TraesCS7A01G092800 chr6A 95.000 200 8 2 343 540 235919295 235919494 2.110000e-81 313.0
59 TraesCS7A01G092800 chr2A 97.561 246 6 0 2570 2815 640153825 640153580 3.350000e-114 422.0
60 TraesCS7A01G092800 chr2A 96.443 253 9 0 2563 2815 725367323 725367575 4.340000e-113 418.0
61 TraesCS7A01G092800 chr3A 97.189 249 4 1 2567 2815 416153469 416153714 4.340000e-113 418.0
62 TraesCS7A01G092800 chr5A 96.429 252 9 0 2564 2815 195670118 195670369 1.560000e-112 416.0
63 TraesCS7A01G092800 chr5A 94.500 200 10 1 342 540 642614211 642614012 9.800000e-80 307.0
64 TraesCS7A01G092800 chr6D 94.975 199 9 1 343 540 179949472 179949670 7.570000e-81 311.0
65 TraesCS7A01G092800 chr6D 93.689 206 11 2 337 540 28048909 28048704 9.800000e-80 307.0
66 TraesCS7A01G092800 chr6D 82.278 79 9 1 45 123 345745853 345745780 2.340000e-06 63.9
67 TraesCS7A01G092800 chr3D 85.965 171 19 4 2101 2271 149764779 149764614 8.010000e-41 178.0
68 TraesCS7A01G092800 chr3D 84.302 172 23 3 2101 2271 588123553 588123721 6.240000e-37 165.0
69 TraesCS7A01G092800 chr3D 85.000 160 21 2 2101 2260 603686713 603686869 2.900000e-35 159.0
70 TraesCS7A01G092800 chr5D 85.799 169 20 3 2101 2268 461072758 461072593 2.880000e-40 176.0
71 TraesCS7A01G092800 chr5D 82.143 112 18 2 88 198 437444631 437444521 8.300000e-16 95.3
72 TraesCS7A01G092800 chr2D 86.875 160 18 2 2101 2260 593512493 593512649 2.880000e-40 176.0
73 TraesCS7A01G092800 chr4D 80.000 210 27 11 56 261 39415130 39414932 1.050000e-29 141.0
74 TraesCS7A01G092800 chr5B 79.054 148 25 5 146 291 459182210 459182353 2.310000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G092800 chr7A 56323075 56325889 2814 False 1768.200000 5199 100.000000 1 2815 3 chr7A.!!$F7 2814
1 TraesCS7A01G092800 chr7A 56448623 56450657 2034 False 1633.400000 3214 97.672500 537 2577 2 chr7A.!!$F9 2040
2 TraesCS7A01G092800 chr7A 56245229 56246534 1305 False 937.500000 968 94.388000 1220 2498 2 chr7A.!!$F6 1278
3 TraesCS7A01G092800 chr7A 56235386 56236049 663 False 558.000000 558 82.301000 992 1652 1 chr7A.!!$F1 660
4 TraesCS7A01G092800 chr7A 55918369 55930958 12589 False 448.000000 660 82.306800 772 1883 5 chr7A.!!$F5 1111
5 TraesCS7A01G092800 chr7A 56738825 56741699 2874 False 359.666667 675 85.617667 1289 2575 3 chr7A.!!$F10 1286
6 TraesCS7A01G092800 chr7A 56431439 56435036 3597 False 280.000000 460 85.775500 15 1882 2 chr7A.!!$F8 1867
7 TraesCS7A01G092800 chr7D 53529443 53530406 963 False 935.000000 935 84.530000 714 1680 1 chr7D.!!$F2 966
8 TraesCS7A01G092800 chr7D 53564719 53566274 1555 False 369.000000 710 87.414333 933 2498 3 chr7D.!!$F8 1565
9 TraesCS7A01G092800 chr7D 53524557 53525158 601 False 340.000000 340 77.918000 1073 1679 1 chr7D.!!$F1 606
10 TraesCS7A01G092800 chr7D 53705046 53708577 3531 False 240.133333 333 85.500333 1253 1688 3 chr7D.!!$F9 435
11 TraesCS7A01G092800 chr4A 668284788 668288105 3317 False 545.500000 765 81.537000 706 1688 2 chr4A.!!$F2 982
12 TraesCS7A01G092800 chr4A 668305988 668307406 1418 False 265.250000 339 87.089750 933 2430 4 chr4A.!!$F3 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.109153 AGAGCATGCACAACACAGGA 59.891 50.0 21.98 0.0 0.00 3.86 F
1067 4493 0.383491 CACACTTCACTGCTTTCGCG 60.383 55.0 0.00 0.0 39.65 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 4535 0.813184 GGGTCACCGTCGACATCTTA 59.187 55.0 17.16 0.0 37.66 2.10 R
2539 19901 0.105224 TTCCAGTCGCGTTCTCCAAA 59.895 50.0 5.77 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.744087 ATATTGTTGTTACAGTGTCACATGT 57.256 32.000 10.95 9.13 35.28 3.21
46 47 5.888691 TTGTTGTTACAGTGTCACATGTT 57.111 34.783 10.95 0.00 35.28 2.71
47 48 5.228579 TGTTGTTACAGTGTCACATGTTG 57.771 39.130 10.95 0.00 0.00 3.33
50 51 2.616376 GTTACAGTGTCACATGTTGGCA 59.384 45.455 0.00 0.00 37.55 4.92
56 57 2.653726 TGTCACATGTTGGCACTTCTT 58.346 42.857 0.00 0.00 33.77 2.52
57 58 3.023119 TGTCACATGTTGGCACTTCTTT 58.977 40.909 0.00 0.00 33.77 2.52
58 59 3.446873 TGTCACATGTTGGCACTTCTTTT 59.553 39.130 0.00 0.00 33.77 2.27
59 60 4.081752 TGTCACATGTTGGCACTTCTTTTT 60.082 37.500 0.00 0.00 33.77 1.94
79 80 2.609427 TAGATGGTGAGAGCATGCAC 57.391 50.000 21.98 14.59 36.31 4.57
81 82 1.003928 AGATGGTGAGAGCATGCACAA 59.996 47.619 21.98 2.49 36.31 3.33
82 83 1.131883 GATGGTGAGAGCATGCACAAC 59.868 52.381 21.98 18.77 36.31 3.32
83 84 0.179023 TGGTGAGAGCATGCACAACA 60.179 50.000 21.98 21.05 36.76 3.33
84 85 0.239347 GGTGAGAGCATGCACAACAC 59.761 55.000 24.77 24.77 36.76 3.32
85 86 0.946528 GTGAGAGCATGCACAACACA 59.053 50.000 26.40 15.58 35.19 3.72
86 87 1.069432 GTGAGAGCATGCACAACACAG 60.069 52.381 26.40 0.00 35.19 3.66
87 88 0.520404 GAGAGCATGCACAACACAGG 59.480 55.000 21.98 0.00 0.00 4.00
88 89 0.109153 AGAGCATGCACAACACAGGA 59.891 50.000 21.98 0.00 0.00 3.86
91 92 0.385029 GCATGCACAACACAGGACAA 59.615 50.000 14.21 0.00 0.00 3.18
93 94 2.546373 GCATGCACAACACAGGACAAAT 60.546 45.455 14.21 0.00 0.00 2.32
105 106 6.810888 CACAGGACAAATGTGTTTTTACAG 57.189 37.500 0.00 0.00 42.47 2.74
106 107 5.748152 CACAGGACAAATGTGTTTTTACAGG 59.252 40.000 0.00 0.00 42.47 4.00
107 108 4.744631 CAGGACAAATGTGTTTTTACAGGC 59.255 41.667 0.00 0.00 38.41 4.85
108 109 4.649218 AGGACAAATGTGTTTTTACAGGCT 59.351 37.500 0.00 0.00 38.41 4.58
109 110 4.744631 GGACAAATGTGTTTTTACAGGCTG 59.255 41.667 14.16 14.16 38.41 4.85
110 111 4.692228 ACAAATGTGTTTTTACAGGCTGG 58.308 39.130 20.34 0.58 32.58 4.85
112 113 5.115480 CAAATGTGTTTTTACAGGCTGGTT 58.885 37.500 20.34 0.44 33.44 3.67
114 115 2.159170 TGTGTTTTTACAGGCTGGTTGC 60.159 45.455 20.34 4.43 41.94 4.17
115 116 2.100749 GTGTTTTTACAGGCTGGTTGCT 59.899 45.455 20.34 0.00 42.39 3.91
116 117 2.100584 TGTTTTTACAGGCTGGTTGCTG 59.899 45.455 20.34 0.00 42.39 4.41
122 123 3.064324 GGCTGGTTGCTGCCGATT 61.064 61.111 0.00 0.00 42.39 3.34
123 124 1.748879 GGCTGGTTGCTGCCGATTA 60.749 57.895 0.00 0.00 42.39 1.75
124 125 1.312371 GGCTGGTTGCTGCCGATTAA 61.312 55.000 0.00 0.00 42.39 1.40
126 127 1.134946 GCTGGTTGCTGCCGATTAATT 59.865 47.619 0.00 0.00 38.95 1.40
127 128 2.417243 GCTGGTTGCTGCCGATTAATTT 60.417 45.455 0.00 0.00 38.95 1.82
128 129 3.181491 GCTGGTTGCTGCCGATTAATTTA 60.181 43.478 0.00 0.00 38.95 1.40
129 130 4.676723 GCTGGTTGCTGCCGATTAATTTAA 60.677 41.667 0.00 0.00 38.95 1.52
130 131 4.992688 TGGTTGCTGCCGATTAATTTAAG 58.007 39.130 0.00 0.00 0.00 1.85
131 132 4.461081 TGGTTGCTGCCGATTAATTTAAGT 59.539 37.500 0.00 0.00 0.00 2.24
132 133 5.648526 TGGTTGCTGCCGATTAATTTAAGTA 59.351 36.000 0.00 0.00 0.00 2.24
133 134 6.151312 TGGTTGCTGCCGATTAATTTAAGTAA 59.849 34.615 0.00 0.00 0.00 2.24
134 135 7.147983 TGGTTGCTGCCGATTAATTTAAGTAAT 60.148 33.333 0.00 0.00 0.00 1.89
136 137 7.561021 TGCTGCCGATTAATTTAAGTAATCA 57.439 32.000 20.20 5.72 37.68 2.57
137 138 8.165239 TGCTGCCGATTAATTTAAGTAATCAT 57.835 30.769 20.20 0.00 37.68 2.45
138 139 8.289618 TGCTGCCGATTAATTTAAGTAATCATC 58.710 33.333 20.20 13.11 37.68 2.92
139 140 7.478667 GCTGCCGATTAATTTAAGTAATCATCG 59.521 37.037 20.20 11.13 37.68 3.84
142 143 7.241376 CCGATTAATTTAAGTAATCATCGGCC 58.759 38.462 20.20 0.00 44.32 6.13
143 144 7.119262 CCGATTAATTTAAGTAATCATCGGCCT 59.881 37.037 20.20 0.00 44.32 5.19
144 145 9.146984 CGATTAATTTAAGTAATCATCGGCCTA 57.853 33.333 20.20 0.00 37.68 3.93
147 148 7.964604 AATTTAAGTAATCATCGGCCTAGTC 57.035 36.000 0.00 0.00 0.00 2.59
148 149 6.474140 TTTAAGTAATCATCGGCCTAGTCA 57.526 37.500 0.00 0.00 0.00 3.41
149 150 6.474140 TTAAGTAATCATCGGCCTAGTCAA 57.526 37.500 0.00 0.00 0.00 3.18
150 151 5.353394 AAGTAATCATCGGCCTAGTCAAA 57.647 39.130 0.00 0.00 0.00 2.69
151 152 5.353394 AGTAATCATCGGCCTAGTCAAAA 57.647 39.130 0.00 0.00 0.00 2.44
152 153 5.930135 AGTAATCATCGGCCTAGTCAAAAT 58.070 37.500 0.00 0.00 0.00 1.82
153 154 5.992217 AGTAATCATCGGCCTAGTCAAAATC 59.008 40.000 0.00 0.00 0.00 2.17
154 155 3.904800 TCATCGGCCTAGTCAAAATCA 57.095 42.857 0.00 0.00 0.00 2.57
156 157 4.129380 TCATCGGCCTAGTCAAAATCATG 58.871 43.478 0.00 0.00 0.00 3.07
157 158 3.904800 TCGGCCTAGTCAAAATCATGA 57.095 42.857 0.00 0.00 0.00 3.07
158 159 4.214986 TCGGCCTAGTCAAAATCATGAA 57.785 40.909 0.00 0.00 0.00 2.57
160 161 4.816385 TCGGCCTAGTCAAAATCATGAATC 59.184 41.667 0.00 0.00 0.00 2.52
161 162 4.576053 CGGCCTAGTCAAAATCATGAATCA 59.424 41.667 0.00 0.00 0.00 2.57
163 164 6.404623 CGGCCTAGTCAAAATCATGAATCAAA 60.405 38.462 0.00 0.00 0.00 2.69
165 166 7.983484 GGCCTAGTCAAAATCATGAATCAAATT 59.017 33.333 0.00 0.00 0.00 1.82
166 167 9.028185 GCCTAGTCAAAATCATGAATCAAATTC 57.972 33.333 0.00 0.00 39.70 2.17
195 196 8.970859 ATTTAATACCCAACTGAATGAGAGAG 57.029 34.615 0.00 0.00 0.00 3.20
196 197 2.777832 ACCCAACTGAATGAGAGAGC 57.222 50.000 0.00 0.00 0.00 4.09
197 198 2.264455 ACCCAACTGAATGAGAGAGCT 58.736 47.619 0.00 0.00 0.00 4.09
198 199 2.641815 ACCCAACTGAATGAGAGAGCTT 59.358 45.455 0.00 0.00 0.00 3.74
199 200 3.840666 ACCCAACTGAATGAGAGAGCTTA 59.159 43.478 0.00 0.00 0.00 3.09
200 201 4.081198 ACCCAACTGAATGAGAGAGCTTAG 60.081 45.833 0.00 0.00 0.00 2.18
201 202 4.081198 CCCAACTGAATGAGAGAGCTTAGT 60.081 45.833 0.00 0.00 0.00 2.24
202 203 5.486526 CCAACTGAATGAGAGAGCTTAGTT 58.513 41.667 0.00 0.00 0.00 2.24
203 204 5.350914 CCAACTGAATGAGAGAGCTTAGTTG 59.649 44.000 0.00 0.00 41.86 3.16
205 206 5.964758 ACTGAATGAGAGAGCTTAGTTGAG 58.035 41.667 0.00 0.00 0.00 3.02
206 207 5.714333 ACTGAATGAGAGAGCTTAGTTGAGA 59.286 40.000 0.00 0.00 0.00 3.27
207 208 6.210385 ACTGAATGAGAGAGCTTAGTTGAGAA 59.790 38.462 0.00 0.00 0.00 2.87
208 209 6.997655 TGAATGAGAGAGCTTAGTTGAGAAA 58.002 36.000 0.00 0.00 0.00 2.52
209 210 7.619050 TGAATGAGAGAGCTTAGTTGAGAAAT 58.381 34.615 0.00 0.00 0.00 2.17
212 213 7.710676 TGAGAGAGCTTAGTTGAGAAATAGT 57.289 36.000 0.00 0.00 0.00 2.12
213 214 8.128322 TGAGAGAGCTTAGTTGAGAAATAGTT 57.872 34.615 0.00 0.00 0.00 2.24
215 216 8.128322 AGAGAGCTTAGTTGAGAAATAGTTGA 57.872 34.615 0.00 0.00 0.00 3.18
216 217 8.032451 AGAGAGCTTAGTTGAGAAATAGTTGAC 58.968 37.037 0.00 0.00 0.00 3.18
217 218 7.100409 AGAGCTTAGTTGAGAAATAGTTGACC 58.900 38.462 0.00 0.00 0.00 4.02
218 219 7.010339 AGCTTAGTTGAGAAATAGTTGACCT 57.990 36.000 0.00 0.00 0.00 3.85
219 220 8.135382 AGCTTAGTTGAGAAATAGTTGACCTA 57.865 34.615 0.00 0.00 0.00 3.08
220 221 8.035984 AGCTTAGTTGAGAAATAGTTGACCTAC 58.964 37.037 0.00 0.00 0.00 3.18
222 223 9.575783 CTTAGTTGAGAAATAGTTGACCTACTC 57.424 37.037 0.00 0.00 0.00 2.59
223 224 7.540474 AGTTGAGAAATAGTTGACCTACTCA 57.460 36.000 0.00 0.00 29.24 3.41
224 225 7.963532 AGTTGAGAAATAGTTGACCTACTCAA 58.036 34.615 0.00 0.00 35.53 3.02
225 226 8.429641 AGTTGAGAAATAGTTGACCTACTCAAA 58.570 33.333 0.00 0.00 40.73 2.69
226 227 9.052759 GTTGAGAAATAGTTGACCTACTCAAAA 57.947 33.333 0.00 0.00 40.73 2.44
227 228 9.793259 TTGAGAAATAGTTGACCTACTCAAAAT 57.207 29.630 0.00 0.00 40.73 1.82
228 229 9.436957 TGAGAAATAGTTGACCTACTCAAAATC 57.563 33.333 0.00 0.00 40.73 2.17
229 230 9.436957 GAGAAATAGTTGACCTACTCAAAATCA 57.563 33.333 0.00 0.00 40.73 2.57
230 231 9.965902 AGAAATAGTTGACCTACTCAAAATCAT 57.034 29.630 0.00 0.00 40.73 2.45
236 237 9.739276 AGTTGACCTACTCAAAATCATAAATCA 57.261 29.630 0.00 0.00 40.73 2.57
270 271 7.452880 TTGAACAGTTCAATTCAATAGGAGG 57.547 36.000 22.53 0.00 44.21 4.30
271 272 5.945784 TGAACAGTTCAATTCAATAGGAGGG 59.054 40.000 13.90 0.00 36.59 4.30
273 274 4.018050 ACAGTTCAATTCAATAGGAGGGCT 60.018 41.667 0.00 0.00 0.00 5.19
274 275 4.952335 CAGTTCAATTCAATAGGAGGGCTT 59.048 41.667 0.00 0.00 0.00 4.35
276 277 6.603201 CAGTTCAATTCAATAGGAGGGCTTTA 59.397 38.462 0.00 0.00 0.00 1.85
278 279 7.673926 AGTTCAATTCAATAGGAGGGCTTTAAA 59.326 33.333 0.00 0.00 0.00 1.52
279 280 8.311109 GTTCAATTCAATAGGAGGGCTTTAAAA 58.689 33.333 0.00 0.00 0.00 1.52
280 281 7.836842 TCAATTCAATAGGAGGGCTTTAAAAC 58.163 34.615 0.00 0.00 0.00 2.43
281 282 7.673926 TCAATTCAATAGGAGGGCTTTAAAACT 59.326 33.333 0.00 0.00 0.00 2.66
283 284 8.753497 ATTCAATAGGAGGGCTTTAAAACTAG 57.247 34.615 0.00 0.00 0.00 2.57
284 285 7.504926 TCAATAGGAGGGCTTTAAAACTAGA 57.495 36.000 0.00 0.00 0.00 2.43
285 286 7.924541 TCAATAGGAGGGCTTTAAAACTAGAA 58.075 34.615 0.00 0.00 0.00 2.10
286 287 8.387813 TCAATAGGAGGGCTTTAAAACTAGAAA 58.612 33.333 0.00 0.00 0.00 2.52
287 288 9.020731 CAATAGGAGGGCTTTAAAACTAGAAAA 57.979 33.333 0.00 0.00 0.00 2.29
289 290 6.370453 AGGAGGGCTTTAAAACTAGAAAACA 58.630 36.000 0.00 0.00 0.00 2.83
291 292 8.168058 AGGAGGGCTTTAAAACTAGAAAACATA 58.832 33.333 0.00 0.00 0.00 2.29
292 293 8.459635 GGAGGGCTTTAAAACTAGAAAACATAG 58.540 37.037 0.00 0.00 0.00 2.23
293 294 8.935614 AGGGCTTTAAAACTAGAAAACATAGT 57.064 30.769 0.00 0.00 34.96 2.12
294 295 9.363401 AGGGCTTTAAAACTAGAAAACATAGTT 57.637 29.630 0.00 0.00 43.58 2.24
296 297 9.961265 GGCTTTAAAACTAGAAAACATAGTTGT 57.039 29.630 0.00 0.00 41.47 3.32
347 348 9.445878 ACACTAGTAATAGAAAAACCTTTAGGC 57.554 33.333 3.83 0.00 39.32 3.93
348 349 8.890718 CACTAGTAATAGAAAAACCTTTAGGCC 58.109 37.037 3.83 0.00 39.32 5.19
350 351 9.327628 CTAGTAATAGAAAAACCTTTAGGCCTC 57.672 37.037 9.68 0.00 39.32 4.70
351 352 7.117397 AGTAATAGAAAAACCTTTAGGCCTCC 58.883 38.462 9.68 0.00 39.32 4.30
352 353 5.798239 ATAGAAAAACCTTTAGGCCTCCT 57.202 39.130 9.68 0.00 39.32 3.69
354 355 4.816126 AGAAAAACCTTTAGGCCTCCTTT 58.184 39.130 9.68 0.00 39.32 3.11
355 356 4.588951 AGAAAAACCTTTAGGCCTCCTTTG 59.411 41.667 9.68 0.00 39.32 2.77
356 357 2.604912 AACCTTTAGGCCTCCTTTGG 57.395 50.000 9.68 8.66 39.32 3.28
357 358 1.456919 ACCTTTAGGCCTCCTTTGGT 58.543 50.000 9.68 9.37 39.32 3.67
358 359 1.787058 ACCTTTAGGCCTCCTTTGGTT 59.213 47.619 9.68 0.00 39.32 3.67
360 361 3.399983 ACCTTTAGGCCTCCTTTGGTTTA 59.600 43.478 9.68 0.00 39.32 2.01
362 363 4.263771 CCTTTAGGCCTCCTTTGGTTTAGA 60.264 45.833 9.68 0.00 34.61 2.10
363 364 4.569719 TTAGGCCTCCTTTGGTTTAGAG 57.430 45.455 9.68 0.00 34.61 2.43
372 373 6.200878 TCCTTTGGTTTAGAGGAATCTTGT 57.799 37.500 0.00 0.00 36.67 3.16
374 375 7.394816 TCCTTTGGTTTAGAGGAATCTTGTAG 58.605 38.462 0.00 0.00 36.67 2.74
376 377 6.945636 TTGGTTTAGAGGAATCTTGTAGGA 57.054 37.500 0.00 0.00 0.00 2.94
377 378 6.945636 TGGTTTAGAGGAATCTTGTAGGAA 57.054 37.500 0.00 0.00 0.00 3.36
378 379 7.510675 TGGTTTAGAGGAATCTTGTAGGAAT 57.489 36.000 0.00 0.00 0.00 3.01
379 380 7.928873 TGGTTTAGAGGAATCTTGTAGGAATT 58.071 34.615 0.00 0.00 0.00 2.17
380 381 8.390921 TGGTTTAGAGGAATCTTGTAGGAATTT 58.609 33.333 0.00 0.00 0.00 1.82
381 382 8.894731 GGTTTAGAGGAATCTTGTAGGAATTTC 58.105 37.037 0.00 0.00 0.00 2.17
382 383 9.449719 GTTTAGAGGAATCTTGTAGGAATTTCA 57.550 33.333 0.00 0.00 0.00 2.69
386 387 8.435982 AGAGGAATCTTGTAGGAATTTCATAGG 58.564 37.037 0.00 0.00 0.00 2.57
387 388 8.337118 AGGAATCTTGTAGGAATTTCATAGGA 57.663 34.615 0.00 0.00 0.00 2.94
388 389 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
392 393 9.621239 ATCTTGTAGGAATTTCATAGGATAGGA 57.379 33.333 0.00 0.00 0.00 2.94
393 394 9.621239 TCTTGTAGGAATTTCATAGGATAGGAT 57.379 33.333 0.00 0.00 28.27 3.24
426 427 5.745312 AAAATTCCTTTAGAGCCCTTTGG 57.255 39.130 0.00 0.00 0.00 3.28
428 429 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
429 430 3.895704 TCCTTTAGAGCCCTTTGGTTT 57.104 42.857 0.00 0.00 0.00 3.27
430 431 3.496331 TCCTTTAGAGCCCTTTGGTTTG 58.504 45.455 0.00 0.00 0.00 2.93
431 432 3.117284 TCCTTTAGAGCCCTTTGGTTTGT 60.117 43.478 0.00 0.00 0.00 2.83
432 433 4.105057 TCCTTTAGAGCCCTTTGGTTTGTA 59.895 41.667 0.00 0.00 0.00 2.41
433 434 4.459337 CCTTTAGAGCCCTTTGGTTTGTAG 59.541 45.833 0.00 0.00 0.00 2.74
434 435 2.586648 AGAGCCCTTTGGTTTGTAGG 57.413 50.000 0.00 0.00 0.00 3.18
435 436 2.062636 AGAGCCCTTTGGTTTGTAGGA 58.937 47.619 0.00 0.00 0.00 2.94
436 437 2.649816 AGAGCCCTTTGGTTTGTAGGAT 59.350 45.455 0.00 0.00 0.00 3.24
437 438 3.076032 AGAGCCCTTTGGTTTGTAGGATT 59.924 43.478 0.00 0.00 0.00 3.01
438 439 3.165071 AGCCCTTTGGTTTGTAGGATTG 58.835 45.455 0.00 0.00 0.00 2.67
440 441 3.773560 CCCTTTGGTTTGTAGGATTGGA 58.226 45.455 0.00 0.00 0.00 3.53
441 442 4.156477 CCCTTTGGTTTGTAGGATTGGAA 58.844 43.478 0.00 0.00 0.00 3.53
442 443 4.777366 CCCTTTGGTTTGTAGGATTGGAAT 59.223 41.667 0.00 0.00 0.00 3.01
443 444 5.105351 CCCTTTGGTTTGTAGGATTGGAATC 60.105 44.000 0.00 0.00 34.66 2.52
444 445 5.716703 CCTTTGGTTTGTAGGATTGGAATCT 59.283 40.000 0.00 0.00 35.73 2.40
445 446 6.889722 CCTTTGGTTTGTAGGATTGGAATCTA 59.110 38.462 0.00 0.00 35.73 1.98
446 447 7.561356 CCTTTGGTTTGTAGGATTGGAATCTAT 59.439 37.037 0.00 0.00 35.73 1.98
447 448 8.893563 TTTGGTTTGTAGGATTGGAATCTATT 57.106 30.769 0.00 0.00 35.73 1.73
448 449 8.519799 TTGGTTTGTAGGATTGGAATCTATTC 57.480 34.615 0.00 0.00 35.73 1.75
517 518 8.918202 AAACATTAGACTACACTCAATGGAAA 57.082 30.769 0.00 0.00 32.20 3.13
519 520 8.918202 ACATTAGACTACACTCAATGGAAAAA 57.082 30.769 0.00 0.00 32.20 1.94
544 545 8.937634 AATTCTATGATGTGAATCAAAAAGGC 57.062 30.769 0.00 0.00 32.43 4.35
548 549 5.314923 TGATGTGAATCAAAAAGGCTAGC 57.685 39.130 6.04 6.04 0.00 3.42
549 550 4.766373 TGATGTGAATCAAAAAGGCTAGCA 59.234 37.500 18.24 0.00 0.00 3.49
550 551 4.503741 TGTGAATCAAAAAGGCTAGCAC 57.496 40.909 18.24 6.06 0.00 4.40
551 552 3.058293 TGTGAATCAAAAAGGCTAGCACG 60.058 43.478 18.24 0.00 0.00 5.34
552 553 3.058224 GTGAATCAAAAAGGCTAGCACGT 60.058 43.478 18.24 1.24 0.00 4.49
554 555 4.153475 TGAATCAAAAAGGCTAGCACGTAC 59.847 41.667 18.24 0.00 0.00 3.67
555 556 3.114668 TCAAAAAGGCTAGCACGTACA 57.885 42.857 18.24 0.00 0.00 2.90
556 557 2.803956 TCAAAAAGGCTAGCACGTACAC 59.196 45.455 18.24 0.00 0.00 2.90
557 558 1.804601 AAAAGGCTAGCACGTACACC 58.195 50.000 18.24 0.00 0.00 4.16
558 559 0.389426 AAAGGCTAGCACGTACACCG 60.389 55.000 18.24 0.00 44.03 4.94
559 560 2.202703 GGCTAGCACGTACACCGG 60.203 66.667 18.24 0.00 42.24 5.28
561 562 2.493030 CTAGCACGTACACCGGGG 59.507 66.667 0.00 0.00 41.48 5.73
562 563 2.035469 TAGCACGTACACCGGGGA 59.965 61.111 12.96 0.00 41.48 4.81
563 564 1.597797 CTAGCACGTACACCGGGGAA 61.598 60.000 12.96 0.00 41.48 3.97
564 565 0.971959 TAGCACGTACACCGGGGAAT 60.972 55.000 12.96 0.00 41.48 3.01
632 633 1.212751 GGAACGATGCCAGCCAAAC 59.787 57.895 0.00 0.00 0.00 2.93
928 4321 4.056125 CACCGTCTCAGCTCGCCA 62.056 66.667 0.00 0.00 0.00 5.69
1017 4416 1.833630 TGTCCCATCTCATCTCACACC 59.166 52.381 0.00 0.00 0.00 4.16
1020 4420 1.836166 CCCATCTCATCTCACACCACT 59.164 52.381 0.00 0.00 0.00 4.00
1049 4475 2.115427 TCTTCCCTCACACACTTCACA 58.885 47.619 0.00 0.00 0.00 3.58
1050 4476 2.158957 TCTTCCCTCACACACTTCACAC 60.159 50.000 0.00 0.00 0.00 3.82
1051 4477 1.199615 TCCCTCACACACTTCACACA 58.800 50.000 0.00 0.00 0.00 3.72
1053 4479 1.134401 CCCTCACACACTTCACACACT 60.134 52.381 0.00 0.00 0.00 3.55
1056 4482 3.261580 CTCACACACTTCACACACTTCA 58.738 45.455 0.00 0.00 0.00 3.02
1057 4483 3.000041 TCACACACTTCACACACTTCAC 59.000 45.455 0.00 0.00 0.00 3.18
1058 4484 3.002791 CACACACTTCACACACTTCACT 58.997 45.455 0.00 0.00 0.00 3.41
1061 4487 2.283298 CACTTCACACACTTCACTGCT 58.717 47.619 0.00 0.00 0.00 4.24
1062 4488 2.679837 CACTTCACACACTTCACTGCTT 59.320 45.455 0.00 0.00 0.00 3.91
1063 4489 3.127548 CACTTCACACACTTCACTGCTTT 59.872 43.478 0.00 0.00 0.00 3.51
1064 4490 3.375299 ACTTCACACACTTCACTGCTTTC 59.625 43.478 0.00 0.00 0.00 2.62
1065 4491 1.933181 TCACACACTTCACTGCTTTCG 59.067 47.619 0.00 0.00 0.00 3.46
1066 4492 0.657840 ACACACTTCACTGCTTTCGC 59.342 50.000 0.00 0.00 0.00 4.70
1067 4493 0.383491 CACACTTCACTGCTTTCGCG 60.383 55.000 0.00 0.00 39.65 5.87
1096 4535 3.322466 CCACCAACCTCCCTCGCT 61.322 66.667 0.00 0.00 0.00 4.93
1191 4641 4.443739 CCAAAACAATATGATGCATGGCCT 60.444 41.667 2.46 0.00 0.00 5.19
1243 4701 4.495422 CCGCTCTGTTCTTAGTACATTGT 58.505 43.478 0.00 0.00 0.00 2.71
1244 4702 5.647589 CCGCTCTGTTCTTAGTACATTGTA 58.352 41.667 0.00 0.00 0.00 2.41
1245 4703 5.515626 CCGCTCTGTTCTTAGTACATTGTAC 59.484 44.000 17.43 17.43 0.00 2.90
1246 4704 6.090783 CGCTCTGTTCTTAGTACATTGTACA 58.909 40.000 24.80 11.09 0.00 2.90
2577 19945 3.498661 GGAAGTGGTGGGAAGAAGATTGT 60.499 47.826 0.00 0.00 0.00 2.71
2579 19947 2.711009 AGTGGTGGGAAGAAGATTGTGA 59.289 45.455 0.00 0.00 0.00 3.58
2580 19948 3.138283 AGTGGTGGGAAGAAGATTGTGAA 59.862 43.478 0.00 0.00 0.00 3.18
2581 19949 3.503748 GTGGTGGGAAGAAGATTGTGAAG 59.496 47.826 0.00 0.00 0.00 3.02
2582 19950 3.084786 GGTGGGAAGAAGATTGTGAAGG 58.915 50.000 0.00 0.00 0.00 3.46
2583 19951 3.244911 GGTGGGAAGAAGATTGTGAAGGA 60.245 47.826 0.00 0.00 0.00 3.36
2584 19952 4.398319 GTGGGAAGAAGATTGTGAAGGAA 58.602 43.478 0.00 0.00 0.00 3.36
2585 19953 4.827284 GTGGGAAGAAGATTGTGAAGGAAA 59.173 41.667 0.00 0.00 0.00 3.13
2586 19954 5.478332 GTGGGAAGAAGATTGTGAAGGAAAT 59.522 40.000 0.00 0.00 0.00 2.17
2588 19956 7.340487 GTGGGAAGAAGATTGTGAAGGAAATAT 59.660 37.037 0.00 0.00 0.00 1.28
2589 19957 7.340232 TGGGAAGAAGATTGTGAAGGAAATATG 59.660 37.037 0.00 0.00 0.00 1.78
2591 19959 6.705863 AGAAGATTGTGAAGGAAATATGCC 57.294 37.500 0.00 0.00 0.00 4.40
2592 19960 5.595952 AGAAGATTGTGAAGGAAATATGCCC 59.404 40.000 0.00 0.00 0.00 5.36
2593 19961 5.134725 AGATTGTGAAGGAAATATGCCCT 57.865 39.130 0.00 0.00 0.00 5.19
2594 19962 6.266131 AGATTGTGAAGGAAATATGCCCTA 57.734 37.500 0.00 0.00 31.36 3.53
2595 19963 6.302269 AGATTGTGAAGGAAATATGCCCTAG 58.698 40.000 0.00 0.00 31.36 3.02
2598 19966 4.103153 TGTGAAGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
2673 20041 7.490962 TTCATGCTAGAATTGTATTAACCGG 57.509 36.000 0.00 0.00 0.00 5.28
2674 20042 6.822442 TCATGCTAGAATTGTATTAACCGGA 58.178 36.000 9.46 0.00 0.00 5.14
2675 20043 7.276658 TCATGCTAGAATTGTATTAACCGGAA 58.723 34.615 9.46 0.00 0.00 4.30
2677 20045 7.311364 TGCTAGAATTGTATTAACCGGAAAC 57.689 36.000 9.46 0.00 0.00 2.78
2678 20046 6.879993 TGCTAGAATTGTATTAACCGGAAACA 59.120 34.615 9.46 1.34 0.00 2.83
2679 20047 7.554835 TGCTAGAATTGTATTAACCGGAAACAT 59.445 33.333 9.46 0.00 0.00 2.71
2680 20048 9.048446 GCTAGAATTGTATTAACCGGAAACATA 57.952 33.333 9.46 0.00 0.00 2.29
2688 20056 9.616156 TGTATTAACCGGAAACATAATACATGT 57.384 29.630 22.31 2.69 42.13 3.21
2689 20057 9.872757 GTATTAACCGGAAACATAATACATGTG 57.127 33.333 9.46 0.00 39.40 3.21
2690 20058 7.925043 TTAACCGGAAACATAATACATGTGT 57.075 32.000 9.46 0.00 31.80 3.72
2691 20059 5.811399 ACCGGAAACATAATACATGTGTG 57.189 39.130 9.46 4.81 31.80 3.82
2692 20060 5.492895 ACCGGAAACATAATACATGTGTGA 58.507 37.500 9.46 0.00 31.80 3.58
2693 20061 5.941058 ACCGGAAACATAATACATGTGTGAA 59.059 36.000 9.46 0.00 31.80 3.18
2694 20062 6.601613 ACCGGAAACATAATACATGTGTGAAT 59.398 34.615 9.46 0.00 31.80 2.57
2695 20063 7.771361 ACCGGAAACATAATACATGTGTGAATA 59.229 33.333 9.46 0.00 31.80 1.75
2696 20064 8.067784 CCGGAAACATAATACATGTGTGAATAC 58.932 37.037 9.11 0.00 31.80 1.89
2697 20065 8.608317 CGGAAACATAATACATGTGTGAATACA 58.392 33.333 9.11 0.00 34.63 2.29
2707 20075 7.977789 ACATGTGTGAATACATAGACAAACA 57.022 32.000 0.00 0.00 39.17 2.83
2709 20077 7.661437 ACATGTGTGAATACATAGACAAACAGT 59.339 33.333 0.00 0.00 39.17 3.55
2710 20078 9.150348 CATGTGTGAATACATAGACAAACAGTA 57.850 33.333 0.00 0.00 39.17 2.74
2711 20079 9.890629 ATGTGTGAATACATAGACAAACAGTAT 57.109 29.630 0.00 0.00 39.40 2.12
2713 20081 9.151471 GTGTGAATACATAGACAAACAGTATGT 57.849 33.333 0.00 0.00 46.47 2.29
2730 20098 6.904498 CAGTATGTCACTAGTATGCCTCTAC 58.096 44.000 0.00 0.00 34.98 2.59
2731 20099 6.712998 CAGTATGTCACTAGTATGCCTCTACT 59.287 42.308 0.00 0.00 34.98 2.57
2732 20100 7.229707 CAGTATGTCACTAGTATGCCTCTACTT 59.770 40.741 0.00 0.00 34.98 2.24
2733 20101 5.836821 TGTCACTAGTATGCCTCTACTTG 57.163 43.478 0.00 0.00 33.96 3.16
2734 20102 5.506708 TGTCACTAGTATGCCTCTACTTGA 58.493 41.667 0.00 0.18 33.96 3.02
2736 20104 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
2737 20105 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
2738 20106 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
2739 20107 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
2740 20108 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
2743 20111 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
2744 20112 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
2745 20113 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
2746 20114 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
2747 20115 4.156190 CCTCTACTTGACTAGCTCGTTGAA 59.844 45.833 0.00 0.00 0.00 2.69
2748 20116 5.163602 CCTCTACTTGACTAGCTCGTTGAAT 60.164 44.000 0.00 0.00 0.00 2.57
2750 20118 4.521130 ACTTGACTAGCTCGTTGAATCA 57.479 40.909 0.00 0.00 0.00 2.57
2751 20119 4.883083 ACTTGACTAGCTCGTTGAATCAA 58.117 39.130 0.00 0.00 0.00 2.57
2753 20121 5.406780 ACTTGACTAGCTCGTTGAATCAAAG 59.593 40.000 0.00 0.00 0.00 2.77
2754 20122 5.134202 TGACTAGCTCGTTGAATCAAAGA 57.866 39.130 10.87 10.87 31.82 2.52
2756 20124 5.578336 TGACTAGCTCGTTGAATCAAAGATG 59.422 40.000 11.68 7.72 32.24 2.90
2757 20125 4.872691 ACTAGCTCGTTGAATCAAAGATGG 59.127 41.667 11.68 3.76 32.24 3.51
2759 20127 4.074970 AGCTCGTTGAATCAAAGATGGTT 58.925 39.130 11.68 0.00 32.24 3.67
2760 20128 5.245531 AGCTCGTTGAATCAAAGATGGTTA 58.754 37.500 11.68 0.00 32.24 2.85
2761 20129 5.705441 AGCTCGTTGAATCAAAGATGGTTAA 59.295 36.000 11.68 0.00 32.24 2.01
2762 20130 6.024049 GCTCGTTGAATCAAAGATGGTTAAG 58.976 40.000 11.68 0.83 32.24 1.85
2763 20131 6.348540 GCTCGTTGAATCAAAGATGGTTAAGT 60.349 38.462 11.68 0.00 32.24 2.24
2764 20132 7.148474 GCTCGTTGAATCAAAGATGGTTAAGTA 60.148 37.037 11.68 0.00 32.24 2.24
2765 20133 8.786826 TCGTTGAATCAAAGATGGTTAAGTAT 57.213 30.769 7.50 0.00 27.31 2.12
2766 20134 8.879759 TCGTTGAATCAAAGATGGTTAAGTATC 58.120 33.333 7.50 0.00 27.31 2.24
2767 20135 8.122952 CGTTGAATCAAAGATGGTTAAGTATCC 58.877 37.037 2.77 0.00 27.31 2.59
2768 20136 9.178758 GTTGAATCAAAGATGGTTAAGTATCCT 57.821 33.333 0.00 0.00 27.31 3.24
2771 20139 8.910351 AATCAAAGATGGTTAAGTATCCTAGC 57.090 34.615 0.00 0.00 0.00 3.42
2772 20140 6.827727 TCAAAGATGGTTAAGTATCCTAGCC 58.172 40.000 0.00 0.00 0.00 3.93
2773 20141 6.385759 TCAAAGATGGTTAAGTATCCTAGCCA 59.614 38.462 0.00 0.00 0.00 4.75
2774 20142 7.072454 TCAAAGATGGTTAAGTATCCTAGCCAT 59.928 37.037 0.00 0.00 37.88 4.40
2776 20144 7.726033 AGATGGTTAAGTATCCTAGCCATAG 57.274 40.000 0.00 0.00 35.64 2.23
2777 20145 7.479579 AGATGGTTAAGTATCCTAGCCATAGA 58.520 38.462 0.00 0.00 35.64 1.98
2778 20146 8.125733 AGATGGTTAAGTATCCTAGCCATAGAT 58.874 37.037 0.00 0.00 35.64 1.98
2779 20147 9.422681 GATGGTTAAGTATCCTAGCCATAGATA 57.577 37.037 0.00 0.00 35.64 1.98
2780 20148 9.959693 ATGGTTAAGTATCCTAGCCATAGATAT 57.040 33.333 0.00 0.00 33.96 1.63
2781 20149 9.201989 TGGTTAAGTATCCTAGCCATAGATATG 57.798 37.037 0.00 0.00 0.00 1.78
2782 20150 9.422681 GGTTAAGTATCCTAGCCATAGATATGA 57.577 37.037 1.32 0.00 35.75 2.15
2791 20159 9.720874 TCCTAGCCATAGATATGAGTTATCATT 57.279 33.333 1.32 0.00 43.92 2.57
2804 20172 8.924511 ATGAGTTATCATTTGATTAACGGGAT 57.075 30.769 0.00 0.00 43.92 3.85
2805 20173 8.378172 TGAGTTATCATTTGATTAACGGGATC 57.622 34.615 0.00 0.00 36.05 3.36
2807 20175 8.154649 AGTTATCATTTGATTAACGGGATCAC 57.845 34.615 0.00 0.00 36.05 3.06
2809 20177 8.567948 GTTATCATTTGATTAACGGGATCACAT 58.432 33.333 0.00 0.00 36.05 3.21
2810 20178 6.618287 TCATTTGATTAACGGGATCACATC 57.382 37.500 0.00 0.00 33.51 3.06
2811 20179 6.118852 TCATTTGATTAACGGGATCACATCA 58.881 36.000 0.00 0.00 33.51 3.07
2812 20180 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
2813 20181 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
2814 20182 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.278978 ACATGTGACACTGTAACAACAATATAA 57.721 29.630 7.20 0.00 29.91 0.98
20 21 8.840833 ACATGTGACACTGTAACAACAATATA 57.159 30.769 7.20 0.00 29.91 0.86
21 22 7.744087 ACATGTGACACTGTAACAACAATAT 57.256 32.000 7.20 0.00 29.91 1.28
22 23 7.413644 CAACATGTGACACTGTAACAACAATA 58.586 34.615 7.20 0.00 29.91 1.90
23 24 6.264832 CAACATGTGACACTGTAACAACAAT 58.735 36.000 7.20 0.00 29.91 2.71
24 25 5.392487 CCAACATGTGACACTGTAACAACAA 60.392 40.000 7.20 0.00 29.91 2.83
25 26 4.095632 CCAACATGTGACACTGTAACAACA 59.904 41.667 7.20 0.00 29.91 3.33
27 28 3.066064 GCCAACATGTGACACTGTAACAA 59.934 43.478 7.20 0.00 29.91 2.83
28 29 2.616376 GCCAACATGTGACACTGTAACA 59.384 45.455 7.20 1.56 30.76 2.41
30 31 2.616376 GTGCCAACATGTGACACTGTAA 59.384 45.455 15.31 0.00 0.00 2.41
32 33 1.024271 GTGCCAACATGTGACACTGT 58.976 50.000 15.31 6.05 0.00 3.55
33 34 1.311859 AGTGCCAACATGTGACACTG 58.688 50.000 21.36 7.51 39.97 3.66
34 35 1.949525 GAAGTGCCAACATGTGACACT 59.050 47.619 18.11 18.11 43.14 3.55
35 36 1.949525 AGAAGTGCCAACATGTGACAC 59.050 47.619 14.95 14.95 0.00 3.67
36 37 2.346766 AGAAGTGCCAACATGTGACA 57.653 45.000 0.00 0.00 0.00 3.58
37 38 3.715628 AAAGAAGTGCCAACATGTGAC 57.284 42.857 0.00 0.00 0.00 3.67
38 39 4.734398 AAAAAGAAGTGCCAACATGTGA 57.266 36.364 0.00 0.00 0.00 3.58
56 57 4.156556 GTGCATGCTCTCACCATCTAAAAA 59.843 41.667 20.33 0.00 0.00 1.94
57 58 3.691118 GTGCATGCTCTCACCATCTAAAA 59.309 43.478 20.33 0.00 0.00 1.52
58 59 3.273434 GTGCATGCTCTCACCATCTAAA 58.727 45.455 20.33 0.00 0.00 1.85
59 60 2.236893 TGTGCATGCTCTCACCATCTAA 59.763 45.455 20.33 0.00 32.51 2.10
60 61 1.832998 TGTGCATGCTCTCACCATCTA 59.167 47.619 20.33 0.00 32.51 1.98
64 65 0.179023 TGTTGTGCATGCTCTCACCA 60.179 50.000 20.33 11.14 32.51 4.17
66 67 0.946528 TGTGTTGTGCATGCTCTCAC 59.053 50.000 25.87 25.87 0.00 3.51
68 69 0.520404 CCTGTGTTGTGCATGCTCTC 59.480 55.000 20.33 12.82 0.00 3.20
69 70 0.109153 TCCTGTGTTGTGCATGCTCT 59.891 50.000 20.33 0.00 0.00 4.09
70 71 0.239347 GTCCTGTGTTGTGCATGCTC 59.761 55.000 20.33 16.39 0.00 4.26
71 72 0.466007 TGTCCTGTGTTGTGCATGCT 60.466 50.000 20.33 0.00 0.00 3.79
74 75 2.694628 ACATTTGTCCTGTGTTGTGCAT 59.305 40.909 0.00 0.00 0.00 3.96
75 76 2.098614 ACATTTGTCCTGTGTTGTGCA 58.901 42.857 0.00 0.00 0.00 4.57
76 77 2.462889 CACATTTGTCCTGTGTTGTGC 58.537 47.619 0.00 0.00 39.30 4.57
83 84 5.681179 GCCTGTAAAAACACATTTGTCCTGT 60.681 40.000 0.00 0.00 33.55 4.00
84 85 4.744631 GCCTGTAAAAACACATTTGTCCTG 59.255 41.667 0.00 0.00 33.55 3.86
85 86 4.649218 AGCCTGTAAAAACACATTTGTCCT 59.351 37.500 0.00 0.00 33.55 3.85
86 87 4.744631 CAGCCTGTAAAAACACATTTGTCC 59.255 41.667 0.00 0.00 33.55 4.02
87 88 4.744631 CCAGCCTGTAAAAACACATTTGTC 59.255 41.667 0.00 0.00 33.55 3.18
88 89 4.161377 ACCAGCCTGTAAAAACACATTTGT 59.839 37.500 0.00 0.00 37.67 2.83
91 92 4.692228 CAACCAGCCTGTAAAAACACATT 58.308 39.130 0.00 0.00 0.00 2.71
93 94 2.159170 GCAACCAGCCTGTAAAAACACA 60.159 45.455 0.00 0.00 37.23 3.72
106 107 0.740737 ATTAATCGGCAGCAACCAGC 59.259 50.000 0.00 0.00 46.19 4.85
107 108 3.508744 AAATTAATCGGCAGCAACCAG 57.491 42.857 0.00 0.00 0.00 4.00
108 109 4.461081 ACTTAAATTAATCGGCAGCAACCA 59.539 37.500 0.00 0.00 0.00 3.67
109 110 4.993905 ACTTAAATTAATCGGCAGCAACC 58.006 39.130 0.00 0.00 0.00 3.77
110 111 7.913297 TGATTACTTAAATTAATCGGCAGCAAC 59.087 33.333 0.00 0.00 38.35 4.17
112 113 7.561021 TGATTACTTAAATTAATCGGCAGCA 57.439 32.000 0.00 0.00 38.35 4.41
114 115 7.957484 CCGATGATTACTTAAATTAATCGGCAG 59.043 37.037 16.22 0.00 46.40 4.85
115 116 7.802738 CCGATGATTACTTAAATTAATCGGCA 58.197 34.615 16.22 0.00 46.40 5.69
121 122 9.485206 GACTAGGCCGATGATTACTTAAATTAA 57.515 33.333 0.00 0.00 0.00 1.40
122 123 8.644216 TGACTAGGCCGATGATTACTTAAATTA 58.356 33.333 0.00 0.00 0.00 1.40
123 124 7.506114 TGACTAGGCCGATGATTACTTAAATT 58.494 34.615 0.00 0.00 0.00 1.82
124 125 7.062749 TGACTAGGCCGATGATTACTTAAAT 57.937 36.000 0.00 0.00 0.00 1.40
126 127 6.474140 TTGACTAGGCCGATGATTACTTAA 57.526 37.500 0.00 0.00 0.00 1.85
127 128 6.474140 TTTGACTAGGCCGATGATTACTTA 57.526 37.500 0.00 0.00 0.00 2.24
128 129 5.353394 TTTGACTAGGCCGATGATTACTT 57.647 39.130 0.00 0.00 0.00 2.24
129 130 5.353394 TTTTGACTAGGCCGATGATTACT 57.647 39.130 0.00 0.00 0.00 2.24
130 131 5.758296 TGATTTTGACTAGGCCGATGATTAC 59.242 40.000 0.00 0.00 0.00 1.89
131 132 5.924356 TGATTTTGACTAGGCCGATGATTA 58.076 37.500 0.00 0.00 0.00 1.75
132 133 4.780815 TGATTTTGACTAGGCCGATGATT 58.219 39.130 0.00 0.00 0.00 2.57
133 134 4.422073 TGATTTTGACTAGGCCGATGAT 57.578 40.909 0.00 0.00 0.00 2.45
134 135 3.904800 TGATTTTGACTAGGCCGATGA 57.095 42.857 0.00 0.00 0.00 2.92
136 137 4.422073 TCATGATTTTGACTAGGCCGAT 57.578 40.909 0.00 0.00 0.00 4.18
137 138 3.904800 TCATGATTTTGACTAGGCCGA 57.095 42.857 0.00 0.00 0.00 5.54
138 139 4.576053 TGATTCATGATTTTGACTAGGCCG 59.424 41.667 0.00 0.00 0.00 6.13
139 140 6.455360 TTGATTCATGATTTTGACTAGGCC 57.545 37.500 0.00 0.00 0.00 5.19
140 141 8.937634 AATTTGATTCATGATTTTGACTAGGC 57.062 30.769 0.00 0.00 0.00 3.93
168 169 9.753674 TCTCTCATTCAGTTGGGTATTAAATTT 57.246 29.630 0.00 0.00 0.00 1.82
169 170 9.401058 CTCTCTCATTCAGTTGGGTATTAAATT 57.599 33.333 0.00 0.00 0.00 1.82
170 171 7.500559 GCTCTCTCATTCAGTTGGGTATTAAAT 59.499 37.037 0.00 0.00 0.00 1.40
171 172 6.823689 GCTCTCTCATTCAGTTGGGTATTAAA 59.176 38.462 0.00 0.00 0.00 1.52
172 173 6.156949 AGCTCTCTCATTCAGTTGGGTATTAA 59.843 38.462 0.00 0.00 0.00 1.40
174 175 4.472833 AGCTCTCTCATTCAGTTGGGTATT 59.527 41.667 0.00 0.00 0.00 1.89
176 177 3.445008 AGCTCTCTCATTCAGTTGGGTA 58.555 45.455 0.00 0.00 0.00 3.69
179 180 5.083533 ACTAAGCTCTCTCATTCAGTTGG 57.916 43.478 0.00 0.00 0.00 3.77
180 181 6.162079 TCAACTAAGCTCTCTCATTCAGTTG 58.838 40.000 0.00 0.00 41.74 3.16
181 182 6.210385 TCTCAACTAAGCTCTCTCATTCAGTT 59.790 38.462 0.00 0.00 0.00 3.16
182 183 5.714333 TCTCAACTAAGCTCTCTCATTCAGT 59.286 40.000 0.00 0.00 0.00 3.41
183 184 6.206395 TCTCAACTAAGCTCTCTCATTCAG 57.794 41.667 0.00 0.00 0.00 3.02
184 185 6.596309 TTCTCAACTAAGCTCTCTCATTCA 57.404 37.500 0.00 0.00 0.00 2.57
186 187 8.757877 ACTATTTCTCAACTAAGCTCTCTCATT 58.242 33.333 0.00 0.00 0.00 2.57
187 188 8.305046 ACTATTTCTCAACTAAGCTCTCTCAT 57.695 34.615 0.00 0.00 0.00 2.90
188 189 7.710676 ACTATTTCTCAACTAAGCTCTCTCA 57.289 36.000 0.00 0.00 0.00 3.27
190 191 8.032451 GTCAACTATTTCTCAACTAAGCTCTCT 58.968 37.037 0.00 0.00 0.00 3.10
191 192 7.276878 GGTCAACTATTTCTCAACTAAGCTCTC 59.723 40.741 0.00 0.00 0.00 3.20
193 194 7.100409 AGGTCAACTATTTCTCAACTAAGCTC 58.900 38.462 0.00 0.00 0.00 4.09
195 196 8.035984 AGTAGGTCAACTATTTCTCAACTAAGC 58.964 37.037 0.00 0.00 33.43 3.09
196 197 9.575783 GAGTAGGTCAACTATTTCTCAACTAAG 57.424 37.037 0.00 0.00 33.43 2.18
197 198 9.085645 TGAGTAGGTCAACTATTTCTCAACTAA 57.914 33.333 0.00 0.00 32.50 2.24
198 199 8.645814 TGAGTAGGTCAACTATTTCTCAACTA 57.354 34.615 0.00 0.00 32.50 2.24
199 200 7.540474 TGAGTAGGTCAACTATTTCTCAACT 57.460 36.000 0.00 0.00 32.50 3.16
200 201 8.603242 TTTGAGTAGGTCAACTATTTCTCAAC 57.397 34.615 1.60 0.00 45.23 3.18
201 202 9.793259 ATTTTGAGTAGGTCAACTATTTCTCAA 57.207 29.630 0.00 0.00 45.23 3.02
202 203 9.436957 GATTTTGAGTAGGTCAACTATTTCTCA 57.563 33.333 0.00 0.00 45.23 3.27
203 204 9.436957 TGATTTTGAGTAGGTCAACTATTTCTC 57.563 33.333 0.00 0.00 45.23 2.87
247 248 5.945784 CCCTCCTATTGAATTGAACTGTTCA 59.054 40.000 18.69 18.69 38.04 3.18
248 249 5.163612 GCCCTCCTATTGAATTGAACTGTTC 60.164 44.000 13.49 13.49 0.00 3.18
249 250 4.706962 GCCCTCCTATTGAATTGAACTGTT 59.293 41.667 0.00 0.00 0.00 3.16
252 253 4.870021 AGCCCTCCTATTGAATTGAACT 57.130 40.909 0.00 0.00 0.00 3.01
255 256 7.673926 AGTTTTAAAGCCCTCCTATTGAATTGA 59.326 33.333 0.00 0.00 0.00 2.57
256 257 7.840931 AGTTTTAAAGCCCTCCTATTGAATTG 58.159 34.615 0.00 0.00 0.00 2.32
257 258 9.190317 CTAGTTTTAAAGCCCTCCTATTGAATT 57.810 33.333 0.00 0.00 0.00 2.17
258 259 8.557450 TCTAGTTTTAAAGCCCTCCTATTGAAT 58.443 33.333 0.00 0.00 0.00 2.57
259 260 7.924541 TCTAGTTTTAAAGCCCTCCTATTGAA 58.075 34.615 0.00 0.00 0.00 2.69
260 261 7.504926 TCTAGTTTTAAAGCCCTCCTATTGA 57.495 36.000 0.00 0.00 0.00 2.57
262 263 9.021807 GTTTTCTAGTTTTAAAGCCCTCCTATT 57.978 33.333 0.00 0.00 0.00 1.73
263 264 8.168058 TGTTTTCTAGTTTTAAAGCCCTCCTAT 58.832 33.333 0.00 0.00 0.00 2.57
264 265 7.519927 TGTTTTCTAGTTTTAAAGCCCTCCTA 58.480 34.615 0.00 0.00 0.00 2.94
265 266 6.370453 TGTTTTCTAGTTTTAAAGCCCTCCT 58.630 36.000 0.00 0.00 0.00 3.69
266 267 6.644248 TGTTTTCTAGTTTTAAAGCCCTCC 57.356 37.500 0.00 0.00 0.00 4.30
267 268 9.011095 ACTATGTTTTCTAGTTTTAAAGCCCTC 57.989 33.333 0.00 0.00 0.00 4.30
268 269 8.935614 ACTATGTTTTCTAGTTTTAAAGCCCT 57.064 30.769 0.00 0.00 0.00 5.19
269 270 9.406828 CAACTATGTTTTCTAGTTTTAAAGCCC 57.593 33.333 0.00 0.00 37.33 5.19
270 271 9.961265 ACAACTATGTTTTCTAGTTTTAAAGCC 57.039 29.630 0.00 0.00 37.33 4.35
322 323 8.890718 GGCCTAAAGGTTTTTCTATTACTAGTG 58.109 37.037 5.39 0.00 37.57 2.74
323 324 8.833734 AGGCCTAAAGGTTTTTCTATTACTAGT 58.166 33.333 1.29 0.00 37.57 2.57
324 325 9.327628 GAGGCCTAAAGGTTTTTCTATTACTAG 57.672 37.037 4.42 0.00 37.57 2.57
325 326 8.270030 GGAGGCCTAAAGGTTTTTCTATTACTA 58.730 37.037 4.42 0.00 37.57 1.82
327 328 7.117397 AGGAGGCCTAAAGGTTTTTCTATTAC 58.883 38.462 4.42 0.00 37.57 1.89
328 329 7.280044 AGGAGGCCTAAAGGTTTTTCTATTA 57.720 36.000 4.42 0.00 37.57 0.98
329 330 6.153942 AGGAGGCCTAAAGGTTTTTCTATT 57.846 37.500 4.42 0.00 37.57 1.73
330 331 5.798239 AGGAGGCCTAAAGGTTTTTCTAT 57.202 39.130 4.42 0.00 37.57 1.98
331 332 5.594199 AAGGAGGCCTAAAGGTTTTTCTA 57.406 39.130 4.42 0.00 37.57 2.10
332 333 4.471078 AAGGAGGCCTAAAGGTTTTTCT 57.529 40.909 4.42 0.00 37.57 2.52
333 334 4.262463 CCAAAGGAGGCCTAAAGGTTTTTC 60.262 45.833 4.42 0.00 37.57 2.29
334 335 3.646162 CCAAAGGAGGCCTAAAGGTTTTT 59.354 43.478 4.42 0.00 37.57 1.94
335 336 3.239449 CCAAAGGAGGCCTAAAGGTTTT 58.761 45.455 4.42 0.00 37.57 2.43
336 337 2.179204 ACCAAAGGAGGCCTAAAGGTTT 59.821 45.455 4.42 0.00 37.57 3.27
337 338 1.787058 ACCAAAGGAGGCCTAAAGGTT 59.213 47.619 4.42 0.00 37.57 3.50
338 339 1.456919 ACCAAAGGAGGCCTAAAGGT 58.543 50.000 4.42 7.17 37.57 3.50
339 340 2.604912 AACCAAAGGAGGCCTAAAGG 57.395 50.000 4.42 6.44 31.13 3.11
341 342 4.263771 CCTCTAAACCAAAGGAGGCCTAAA 60.264 45.833 4.42 0.00 38.82 1.85
342 343 3.265995 CCTCTAAACCAAAGGAGGCCTAA 59.734 47.826 4.42 0.00 38.82 2.69
344 345 1.636003 CCTCTAAACCAAAGGAGGCCT 59.364 52.381 3.86 3.86 38.82 5.19
345 346 1.633945 TCCTCTAAACCAAAGGAGGCC 59.366 52.381 0.00 0.00 43.46 5.19
346 347 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
347 348 5.443230 AGATTCCTCTAAACCAAAGGAGG 57.557 43.478 0.00 0.00 44.69 4.30
348 349 6.241645 ACAAGATTCCTCTAAACCAAAGGAG 58.758 40.000 0.00 0.00 40.21 3.69
350 351 6.599638 CCTACAAGATTCCTCTAAACCAAAGG 59.400 42.308 0.00 0.00 0.00 3.11
351 352 7.394816 TCCTACAAGATTCCTCTAAACCAAAG 58.605 38.462 0.00 0.00 0.00 2.77
352 353 7.324388 TCCTACAAGATTCCTCTAAACCAAA 57.676 36.000 0.00 0.00 0.00 3.28
354 355 6.945636 TTCCTACAAGATTCCTCTAAACCA 57.054 37.500 0.00 0.00 0.00 3.67
355 356 8.809468 AAATTCCTACAAGATTCCTCTAAACC 57.191 34.615 0.00 0.00 0.00 3.27
356 357 9.449719 TGAAATTCCTACAAGATTCCTCTAAAC 57.550 33.333 0.00 0.00 0.00 2.01
360 361 8.435982 CCTATGAAATTCCTACAAGATTCCTCT 58.564 37.037 0.00 0.00 0.00 3.69
362 363 8.337118 TCCTATGAAATTCCTACAAGATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
366 367 9.621239 TCCTATCCTATGAAATTCCTACAAGAT 57.379 33.333 0.00 0.00 0.00 2.40
367 368 9.621239 ATCCTATCCTATGAAATTCCTACAAGA 57.379 33.333 0.00 0.00 0.00 3.02
403 404 5.606749 ACCAAAGGGCTCTAAAGGAATTTTT 59.393 36.000 5.94 0.00 37.90 1.94
404 405 5.155161 ACCAAAGGGCTCTAAAGGAATTTT 58.845 37.500 5.94 0.00 37.90 1.82
405 406 4.752063 ACCAAAGGGCTCTAAAGGAATTT 58.248 39.130 5.94 0.00 37.90 1.82
407 408 4.404185 AACCAAAGGGCTCTAAAGGAAT 57.596 40.909 5.94 0.00 37.90 3.01
408 409 3.895041 CAAACCAAAGGGCTCTAAAGGAA 59.105 43.478 5.94 0.00 37.90 3.36
409 410 3.117284 ACAAACCAAAGGGCTCTAAAGGA 60.117 43.478 5.94 0.00 37.90 3.36
410 411 3.230976 ACAAACCAAAGGGCTCTAAAGG 58.769 45.455 0.00 0.00 37.90 3.11
411 412 4.459337 CCTACAAACCAAAGGGCTCTAAAG 59.541 45.833 0.00 0.00 37.90 1.85
412 413 4.105057 TCCTACAAACCAAAGGGCTCTAAA 59.895 41.667 0.00 0.00 37.90 1.85
413 414 3.653836 TCCTACAAACCAAAGGGCTCTAA 59.346 43.478 0.00 0.00 37.90 2.10
414 415 3.253220 TCCTACAAACCAAAGGGCTCTA 58.747 45.455 0.00 0.00 37.90 2.43
415 416 2.062636 TCCTACAAACCAAAGGGCTCT 58.937 47.619 0.00 0.00 37.90 4.09
416 417 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
417 418 3.165071 CAATCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
418 419 2.233676 CCAATCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
419 420 3.773560 TCCAATCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
421 422 6.840780 AGATTCCAATCCTACAAACCAAAG 57.159 37.500 0.00 0.00 36.04 2.77
423 424 8.519799 GAATAGATTCCAATCCTACAAACCAA 57.480 34.615 0.00 0.00 36.04 3.67
492 493 8.918202 TTTCCATTGAGTGTAGTCTAATGTTT 57.082 30.769 0.00 0.00 0.00 2.83
493 494 8.918202 TTTTCCATTGAGTGTAGTCTAATGTT 57.082 30.769 0.00 0.00 0.00 2.71
519 520 8.755977 AGCCTTTTTGATTCACATCATAGAATT 58.244 29.630 0.00 0.00 39.28 2.17
520 521 8.302515 AGCCTTTTTGATTCACATCATAGAAT 57.697 30.769 0.00 0.00 39.28 2.40
522 523 7.012704 GCTAGCCTTTTTGATTCACATCATAGA 59.987 37.037 2.29 0.00 39.28 1.98
523 524 7.137426 GCTAGCCTTTTTGATTCACATCATAG 58.863 38.462 2.29 0.00 39.28 2.23
524 525 6.602803 TGCTAGCCTTTTTGATTCACATCATA 59.397 34.615 13.29 0.00 39.28 2.15
525 526 5.419788 TGCTAGCCTTTTTGATTCACATCAT 59.580 36.000 13.29 0.00 39.28 2.45
526 527 4.766373 TGCTAGCCTTTTTGATTCACATCA 59.234 37.500 13.29 0.00 37.67 3.07
527 528 5.098211 GTGCTAGCCTTTTTGATTCACATC 58.902 41.667 13.29 0.00 0.00 3.06
528 529 4.379813 CGTGCTAGCCTTTTTGATTCACAT 60.380 41.667 13.29 0.00 0.00 3.21
529 530 3.058293 CGTGCTAGCCTTTTTGATTCACA 60.058 43.478 13.29 0.00 0.00 3.58
530 531 3.058224 ACGTGCTAGCCTTTTTGATTCAC 60.058 43.478 13.29 0.00 0.00 3.18
531 532 3.146066 ACGTGCTAGCCTTTTTGATTCA 58.854 40.909 13.29 0.00 0.00 2.57
532 533 3.831715 ACGTGCTAGCCTTTTTGATTC 57.168 42.857 13.29 0.00 0.00 2.52
533 534 4.069304 TGTACGTGCTAGCCTTTTTGATT 58.931 39.130 13.29 0.00 0.00 2.57
534 535 3.435671 GTGTACGTGCTAGCCTTTTTGAT 59.564 43.478 13.29 0.00 0.00 2.57
536 537 2.095919 GGTGTACGTGCTAGCCTTTTTG 60.096 50.000 13.29 0.00 0.00 2.44
537 538 2.148768 GGTGTACGTGCTAGCCTTTTT 58.851 47.619 13.29 0.00 0.00 1.94
540 541 1.214589 CGGTGTACGTGCTAGCCTT 59.785 57.895 13.29 0.00 37.93 4.35
541 542 2.707849 CCGGTGTACGTGCTAGCCT 61.708 63.158 13.29 0.00 42.24 4.58
542 543 2.202703 CCGGTGTACGTGCTAGCC 60.203 66.667 13.29 2.49 42.24 3.93
543 544 2.202703 CCCGGTGTACGTGCTAGC 60.203 66.667 8.10 8.10 42.24 3.42
544 545 1.597797 TTCCCCGGTGTACGTGCTAG 61.598 60.000 4.97 0.00 42.24 3.42
548 549 1.930567 CTTATTCCCCGGTGTACGTG 58.069 55.000 0.00 0.00 42.24 4.49
549 550 0.176449 GCTTATTCCCCGGTGTACGT 59.824 55.000 0.00 0.00 42.24 3.57
550 551 0.872881 CGCTTATTCCCCGGTGTACG 60.873 60.000 0.00 0.00 43.80 3.67
551 552 0.461135 TCGCTTATTCCCCGGTGTAC 59.539 55.000 0.00 0.00 0.00 2.90
552 553 1.342174 GATCGCTTATTCCCCGGTGTA 59.658 52.381 0.00 0.00 0.00 2.90
554 555 0.105964 TGATCGCTTATTCCCCGGTG 59.894 55.000 0.00 0.00 0.00 4.94
555 556 0.834612 TTGATCGCTTATTCCCCGGT 59.165 50.000 0.00 0.00 0.00 5.28
556 557 1.202651 AGTTGATCGCTTATTCCCCGG 60.203 52.381 0.00 0.00 0.00 5.73
557 558 2.240493 AGTTGATCGCTTATTCCCCG 57.760 50.000 0.00 0.00 0.00 5.73
558 559 7.923414 ATATAAAGTTGATCGCTTATTCCCC 57.077 36.000 3.26 0.00 0.00 4.81
564 565 9.472361 GTGAGGTAATATAAAGTTGATCGCTTA 57.528 33.333 3.26 0.00 0.00 3.09
622 623 2.094026 CCTAATCCTTTGTTTGGCTGGC 60.094 50.000 0.00 0.00 0.00 4.85
632 633 1.933853 CGGTTCGCTCCTAATCCTTTG 59.066 52.381 0.00 0.00 0.00 2.77
656 657 2.874751 CGGACAACCCAATTCCGC 59.125 61.111 0.00 0.00 45.35 5.54
666 667 1.592223 CTCCCAGTCTCCGGACAAC 59.408 63.158 0.00 1.33 44.36 3.32
999 4398 1.833630 GTGGTGTGAGATGAGATGGGA 59.166 52.381 0.00 0.00 0.00 4.37
1017 4416 4.950475 TGTGAGGGAAGATGAGTAGTAGTG 59.050 45.833 0.00 0.00 0.00 2.74
1020 4420 4.705507 GTGTGTGAGGGAAGATGAGTAGTA 59.294 45.833 0.00 0.00 0.00 1.82
1061 4487 2.591311 GCACGAGAACACCGCGAAA 61.591 57.895 8.23 0.00 40.62 3.46
1062 4488 3.033764 GCACGAGAACACCGCGAA 61.034 61.111 8.23 0.00 40.62 4.70
1065 4491 3.712881 GTGGCACGAGAACACCGC 61.713 66.667 0.00 0.00 0.00 5.68
1066 4492 3.041940 GGTGGCACGAGAACACCG 61.042 66.667 12.17 0.00 44.41 4.94
1068 4494 1.647084 GTTGGTGGCACGAGAACAC 59.353 57.895 12.17 0.00 0.00 3.32
1069 4495 1.525077 GGTTGGTGGCACGAGAACA 60.525 57.895 20.48 8.35 0.00 3.18
1096 4535 0.813184 GGGTCACCGTCGACATCTTA 59.187 55.000 17.16 0.00 37.66 2.10
1243 4701 6.380274 AGGCAGTACAGAAAGCTAATACTGTA 59.620 38.462 17.20 15.67 41.08 2.74
1244 4702 5.187967 AGGCAGTACAGAAAGCTAATACTGT 59.812 40.000 17.20 16.37 41.08 3.55
1245 4703 5.521735 CAGGCAGTACAGAAAGCTAATACTG 59.478 44.000 14.03 14.03 41.48 2.74
1246 4704 5.187967 ACAGGCAGTACAGAAAGCTAATACT 59.812 40.000 0.00 0.00 0.00 2.12
1250 4708 3.664107 CACAGGCAGTACAGAAAGCTAA 58.336 45.455 0.00 0.00 0.00 3.09
2083 14138 6.459670 ACGGAGGTGTTTTTCAACTAAAAT 57.540 33.333 0.00 0.00 45.06 1.82
2533 19895 1.390463 GTCGCGTTCTCCAAATGTCTC 59.610 52.381 5.77 0.00 0.00 3.36
2535 19897 1.126846 CAGTCGCGTTCTCCAAATGTC 59.873 52.381 5.77 0.00 0.00 3.06
2536 19898 1.148310 CAGTCGCGTTCTCCAAATGT 58.852 50.000 5.77 0.00 0.00 2.71
2537 19899 0.443869 CCAGTCGCGTTCTCCAAATG 59.556 55.000 5.77 0.00 0.00 2.32
2538 19900 0.320374 TCCAGTCGCGTTCTCCAAAT 59.680 50.000 5.77 0.00 0.00 2.32
2539 19901 0.105224 TTCCAGTCGCGTTCTCCAAA 59.895 50.000 5.77 0.00 0.00 3.28
2540 19902 0.319555 CTTCCAGTCGCGTTCTCCAA 60.320 55.000 5.77 0.77 0.00 3.53
2541 19903 1.289066 CTTCCAGTCGCGTTCTCCA 59.711 57.895 5.77 0.00 0.00 3.86
2577 19945 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
2589 19957 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
2647 20015 9.214957 CCGGTTAATACAATTCTAGCATGAATA 57.785 33.333 0.00 0.00 35.82 1.75
2648 20016 7.936847 TCCGGTTAATACAATTCTAGCATGAAT 59.063 33.333 0.00 0.00 38.19 2.57
2649 20017 7.276658 TCCGGTTAATACAATTCTAGCATGAA 58.723 34.615 0.00 0.00 0.00 2.57
2651 20019 7.490962 TTCCGGTTAATACAATTCTAGCATG 57.509 36.000 0.00 0.00 0.00 4.06
2652 20020 7.554835 TGTTTCCGGTTAATACAATTCTAGCAT 59.445 33.333 0.00 0.00 0.00 3.79
2653 20021 6.879993 TGTTTCCGGTTAATACAATTCTAGCA 59.120 34.615 0.00 0.00 0.00 3.49
2654 20022 7.311364 TGTTTCCGGTTAATACAATTCTAGC 57.689 36.000 0.00 0.00 0.00 3.42
2664 20032 9.616156 ACACATGTATTATGTTTCCGGTTAATA 57.384 29.630 0.00 0.00 0.00 0.98
2665 20033 8.402472 CACACATGTATTATGTTTCCGGTTAAT 58.598 33.333 0.00 1.95 0.00 1.40
2666 20034 7.606839 TCACACATGTATTATGTTTCCGGTTAA 59.393 33.333 0.00 0.00 0.00 2.01
2667 20035 7.104290 TCACACATGTATTATGTTTCCGGTTA 58.896 34.615 0.00 0.00 0.00 2.85
2668 20036 5.941058 TCACACATGTATTATGTTTCCGGTT 59.059 36.000 0.00 0.00 0.00 4.44
2669 20037 5.492895 TCACACATGTATTATGTTTCCGGT 58.507 37.500 0.00 0.00 0.00 5.28
2670 20038 6.429791 TTCACACATGTATTATGTTTCCGG 57.570 37.500 0.00 0.00 0.00 5.14
2681 20049 9.665719 TGTTTGTCTATGTATTCACACATGTAT 57.334 29.630 0.00 0.00 39.46 2.29
2682 20050 9.150348 CTGTTTGTCTATGTATTCACACATGTA 57.850 33.333 0.00 0.00 39.46 2.29
2683 20051 7.661437 ACTGTTTGTCTATGTATTCACACATGT 59.339 33.333 0.00 0.00 39.46 3.21
2684 20052 8.032952 ACTGTTTGTCTATGTATTCACACATG 57.967 34.615 0.00 0.00 39.46 3.21
2685 20053 9.890629 ATACTGTTTGTCTATGTATTCACACAT 57.109 29.630 0.00 0.00 41.88 3.21
2686 20054 9.150348 CATACTGTTTGTCTATGTATTCACACA 57.850 33.333 0.00 0.00 37.54 3.72
2688 20056 9.366216 GACATACTGTTTGTCTATGTATTCACA 57.634 33.333 19.75 0.00 40.26 3.58
2689 20057 9.366216 TGACATACTGTTTGTCTATGTATTCAC 57.634 33.333 24.76 3.24 43.12 3.18
2690 20058 9.366216 GTGACATACTGTTTGTCTATGTATTCA 57.634 33.333 24.76 6.33 43.12 2.57
2691 20059 9.587772 AGTGACATACTGTTTGTCTATGTATTC 57.412 33.333 24.76 10.29 43.12 1.75
2694 20062 9.239551 ACTAGTGACATACTGTTTGTCTATGTA 57.760 33.333 24.76 13.53 43.12 2.29
2695 20063 8.123639 ACTAGTGACATACTGTTTGTCTATGT 57.876 34.615 24.76 17.10 43.12 2.29
2698 20066 8.188799 GCATACTAGTGACATACTGTTTGTCTA 58.811 37.037 24.76 13.36 43.12 2.59
2699 20067 7.036220 GCATACTAGTGACATACTGTTTGTCT 58.964 38.462 24.76 13.08 43.12 3.41
2700 20068 6.255887 GGCATACTAGTGACATACTGTTTGTC 59.744 42.308 20.08 20.08 43.04 3.18
2701 20069 6.070767 AGGCATACTAGTGACATACTGTTTGT 60.071 38.462 5.39 3.49 40.65 2.83
2702 20070 6.341316 AGGCATACTAGTGACATACTGTTTG 58.659 40.000 5.39 0.00 40.65 2.93
2705 20073 5.450453 AGAGGCATACTAGTGACATACTGT 58.550 41.667 5.39 0.00 40.65 3.55
2707 20075 6.843752 AGTAGAGGCATACTAGTGACATACT 58.156 40.000 5.39 2.39 43.56 2.12
2709 20077 7.228906 GTCAAGTAGAGGCATACTAGTGACATA 59.771 40.741 19.41 0.00 40.28 2.29
2710 20078 6.039941 GTCAAGTAGAGGCATACTAGTGACAT 59.960 42.308 19.41 0.00 40.28 3.06
2711 20079 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
2713 20081 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
2714 20082 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
2715 20083 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
2716 20084 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
2717 20085 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
2718 20086 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
2719 20087 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
2720 20088 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
2721 20089 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
2723 20091 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
2724 20092 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
2725 20093 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
2726 20094 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
2727 20095 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
2729 20097 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
2730 20098 5.635280 TCTTTGATTCAACGAGCTAGTCAAG 59.365 40.000 0.00 0.00 0.00 3.02
2731 20099 5.538118 TCTTTGATTCAACGAGCTAGTCAA 58.462 37.500 0.00 0.00 0.00 3.18
2732 20100 5.134202 TCTTTGATTCAACGAGCTAGTCA 57.866 39.130 0.00 0.00 0.00 3.41
2733 20101 5.006165 CCATCTTTGATTCAACGAGCTAGTC 59.994 44.000 10.80 0.00 0.00 2.59
2734 20102 4.872691 CCATCTTTGATTCAACGAGCTAGT 59.127 41.667 10.80 0.00 0.00 2.57
2736 20104 4.832248 ACCATCTTTGATTCAACGAGCTA 58.168 39.130 10.80 0.00 0.00 3.32
2737 20105 3.679389 ACCATCTTTGATTCAACGAGCT 58.321 40.909 10.80 0.00 0.00 4.09
2738 20106 4.425577 AACCATCTTTGATTCAACGAGC 57.574 40.909 10.80 0.00 0.00 5.03
2739 20107 7.133891 ACTTAACCATCTTTGATTCAACGAG 57.866 36.000 10.80 2.43 0.00 4.18
2740 20108 8.786826 ATACTTAACCATCTTTGATTCAACGA 57.213 30.769 7.90 7.90 0.00 3.85
2756 20124 9.422681 TCATATCTATGGCTAGGATACTTAACC 57.577 37.037 0.00 0.00 40.21 2.85
2764 20132 9.895507 ATGATAACTCATATCTATGGCTAGGAT 57.104 33.333 0.00 0.00 40.39 3.24
2765 20133 9.720874 AATGATAACTCATATCTATGGCTAGGA 57.279 33.333 0.00 0.00 41.34 2.94
2779 20147 8.924511 ATCCCGTTAATCAAATGATAACTCAT 57.075 30.769 0.00 0.00 44.14 2.90
2780 20148 7.990314 TGATCCCGTTAATCAAATGATAACTCA 59.010 33.333 0.00 1.01 33.73 3.41
2781 20149 8.283291 GTGATCCCGTTAATCAAATGATAACTC 58.717 37.037 0.00 0.00 35.04 3.01
2782 20150 7.773224 TGTGATCCCGTTAATCAAATGATAACT 59.227 33.333 0.00 0.00 35.04 2.24
2783 20151 7.925993 TGTGATCCCGTTAATCAAATGATAAC 58.074 34.615 0.00 2.15 35.04 1.89
2784 20152 8.690203 ATGTGATCCCGTTAATCAAATGATAA 57.310 30.769 0.00 0.00 35.04 1.75
2786 20154 6.772233 TGATGTGATCCCGTTAATCAAATGAT 59.228 34.615 0.00 0.00 32.39 2.45
2787 20155 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
2789 20157 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.