Multiple sequence alignment - TraesCS7A01G091300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G091300 chr7A 100.000 6330 0 0 1 6330 55400517 55394188 0.000000e+00 11690.0
1 TraesCS7A01G091300 chr7A 85.368 1278 175 9 4064 5331 55383713 55382438 0.000000e+00 1314.0
2 TraesCS7A01G091300 chr7A 80.147 1637 263 44 2169 3789 55385358 55383768 0.000000e+00 1166.0
3 TraesCS7A01G091300 chr7A 81.588 1385 206 32 2515 3867 55883566 55882199 0.000000e+00 1099.0
4 TraesCS7A01G091300 chr7A 82.526 950 147 15 2528 3473 55377413 55376479 0.000000e+00 817.0
5 TraesCS7A01G091300 chr4A 93.302 4046 183 40 1660 5671 668097343 668093352 0.000000e+00 5890.0
6 TraesCS7A01G091300 chr4A 85.145 1279 176 11 4064 5331 668084625 668083350 0.000000e+00 1297.0
7 TraesCS7A01G091300 chr4A 85.306 1259 172 12 4081 5333 668161472 668160221 0.000000e+00 1288.0
8 TraesCS7A01G091300 chr4A 84.706 1275 185 8 4068 5333 667860191 667858918 0.000000e+00 1266.0
9 TraesCS7A01G091300 chr4A 80.249 1605 261 40 2199 3789 668086242 668084680 0.000000e+00 1157.0
10 TraesCS7A01G091300 chr4A 82.808 983 159 7 2503 3481 668148987 668148011 0.000000e+00 870.0
11 TraesCS7A01G091300 chr4A 86.658 787 60 17 854 1619 668098105 668097343 0.000000e+00 830.0
12 TraesCS7A01G091300 chr4A 86.707 331 36 6 3539 3869 668147923 668147601 1.680000e-95 361.0
13 TraesCS7A01G091300 chr4A 88.995 209 12 5 6122 6330 668091376 668091179 1.360000e-61 248.0
14 TraesCS7A01G091300 chr7D 88.886 4301 322 69 1336 5549 52795299 52799530 0.000000e+00 5151.0
15 TraesCS7A01G091300 chr7D 92.253 3537 217 29 2005 5511 53434903 53431394 0.000000e+00 4961.0
16 TraesCS7A01G091300 chr7D 85.379 1279 173 11 4064 5331 52822715 52823990 0.000000e+00 1314.0
17 TraesCS7A01G091300 chr7D 84.898 1278 181 9 4064 5331 53425931 53424656 0.000000e+00 1280.0
18 TraesCS7A01G091300 chr7D 84.663 1291 181 16 4050 5331 53508571 53507289 0.000000e+00 1271.0
19 TraesCS7A01G091300 chr7D 83.228 1264 184 21 2532 3786 52821413 52822657 0.000000e+00 1134.0
20 TraesCS7A01G091300 chr7D 82.000 1400 192 30 2502 3869 53498751 53497380 0.000000e+00 1134.0
21 TraesCS7A01G091300 chr7D 79.707 1636 273 43 2169 3789 53427577 53425986 0.000000e+00 1127.0
22 TraesCS7A01G091300 chr7D 83.192 946 146 9 2532 3473 52829675 52830611 0.000000e+00 854.0
23 TraesCS7A01G091300 chr7D 83.668 698 83 24 15 696 53436528 53435846 4.170000e-176 628.0
24 TraesCS7A01G091300 chr7D 87.681 552 47 10 1009 1541 53435534 53434985 1.940000e-174 623.0
25 TraesCS7A01G091300 chr7D 83.953 511 72 7 2532 3038 53416485 53415981 1.230000e-131 481.0
26 TraesCS7A01G091300 chr7D 95.745 94 3 1 1591 1684 53434996 53434904 3.950000e-32 150.0
27 TraesCS7A01G091300 chr7D 90.000 70 3 3 837 904 53435669 53435602 3.140000e-13 87.9
28 TraesCS7A01G091300 chr7D 89.362 47 5 0 6058 6104 52818545 52818591 6.850000e-05 60.2
29 TraesCS7A01G091300 chr7D 97.143 35 1 0 6015 6049 53431149 53431115 6.850000e-05 60.2
30 TraesCS7A01G091300 chr2D 87.045 247 26 3 2181 2424 214785436 214785193 2.250000e-69 274.0
31 TraesCS7A01G091300 chr1D 86.800 250 27 3 2178 2424 38627939 38628185 2.250000e-69 274.0
32 TraesCS7A01G091300 chr1D 88.889 225 19 3 2181 2402 104008299 104008078 8.090000e-69 272.0
33 TraesCS7A01G091300 chr1D 86.640 247 27 3 2181 2424 131765884 131765641 1.050000e-67 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G091300 chr7A 55394188 55400517 6329 True 11690.000000 11690 100.000000 1 6330 1 chr7A.!!$R2 6329
1 TraesCS7A01G091300 chr7A 55382438 55385358 2920 True 1240.000000 1314 82.757500 2169 5331 2 chr7A.!!$R4 3162
2 TraesCS7A01G091300 chr7A 55882199 55883566 1367 True 1099.000000 1099 81.588000 2515 3867 1 chr7A.!!$R3 1352
3 TraesCS7A01G091300 chr7A 55376479 55377413 934 True 817.000000 817 82.526000 2528 3473 1 chr7A.!!$R1 945
4 TraesCS7A01G091300 chr4A 668091179 668098105 6926 True 2322.666667 5890 89.651667 854 6330 3 chr4A.!!$R4 5476
5 TraesCS7A01G091300 chr4A 668160221 668161472 1251 True 1288.000000 1288 85.306000 4081 5333 1 chr4A.!!$R2 1252
6 TraesCS7A01G091300 chr4A 667858918 667860191 1273 True 1266.000000 1266 84.706000 4068 5333 1 chr4A.!!$R1 1265
7 TraesCS7A01G091300 chr4A 668083350 668086242 2892 True 1227.000000 1297 82.697000 2199 5331 2 chr4A.!!$R3 3132
8 TraesCS7A01G091300 chr4A 668147601 668148987 1386 True 615.500000 870 84.757500 2503 3869 2 chr4A.!!$R5 1366
9 TraesCS7A01G091300 chr7D 52795299 52799530 4231 False 5151.000000 5151 88.886000 1336 5549 1 chr7D.!!$F1 4213
10 TraesCS7A01G091300 chr7D 53507289 53508571 1282 True 1271.000000 1271 84.663000 4050 5331 1 chr7D.!!$R3 1281
11 TraesCS7A01G091300 chr7D 53497380 53498751 1371 True 1134.000000 1134 82.000000 2502 3869 1 chr7D.!!$R2 1367
12 TraesCS7A01G091300 chr7D 53424656 53436528 11872 True 1114.637500 4961 88.886875 15 6049 8 chr7D.!!$R4 6034
13 TraesCS7A01G091300 chr7D 52829675 52830611 936 False 854.000000 854 83.192000 2532 3473 1 chr7D.!!$F2 941
14 TraesCS7A01G091300 chr7D 52818545 52823990 5445 False 836.066667 1314 85.989667 2532 6104 3 chr7D.!!$F3 3572
15 TraesCS7A01G091300 chr7D 53415981 53416485 504 True 481.000000 481 83.953000 2532 3038 1 chr7D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 914 0.174389 CTGAGGTCGCTGCAGTACAT 59.826 55.000 16.64 11.78 0.00 2.29 F
1119 1233 0.031585 CGCGGAATCTGATTACCCGA 59.968 55.000 25.74 0.00 42.49 5.14 F
2627 2981 0.928726 TATGGGGCTGGGTTTGGGAT 60.929 55.000 0.00 0.00 0.00 3.85 F
3143 3497 1.065199 CACCACATCCATGCCAGTACT 60.065 52.381 0.00 0.00 0.00 2.73 F
4223 4673 1.238439 TCAGAAAAGAAAGCTGGCGG 58.762 50.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 1873 1.017387 CCGAGCAGCCCTTTTCATAC 58.983 55.000 0.00 0.00 0.00 2.39 R
2871 3225 1.083489 TTAAGCCTTGCGAATCACCG 58.917 50.000 0.00 0.00 0.00 4.94 R
3648 4057 1.271379 TGAACAGGTGTAGCTACCGTG 59.729 52.381 21.01 21.95 45.56 4.94 R
4675 5126 0.108207 ACAGATGCAGATAGGCCAGC 59.892 55.000 5.01 0.80 0.00 4.85 R
5994 14581 0.107066 CCCGCCTTATAAACCCGGTT 60.107 55.000 0.00 0.00 37.37 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.701423 TGTTTTGGCCTTTTTAGGGGTC 59.299 45.455 3.32 0.00 0.00 4.46
30 31 2.777459 TTGGCCTTTTTAGGGGTCAA 57.223 45.000 3.32 0.00 43.73 3.18
34 35 3.169908 GGCCTTTTTAGGGGTCAATTGA 58.830 45.455 3.38 3.38 0.00 2.57
52 53 6.882140 TCAATTGAGCTATTTCGGTCCTTTTA 59.118 34.615 3.38 0.00 0.00 1.52
80 81 8.984764 GTTATTTTGACCCTTTTAACATTGGTC 58.015 33.333 0.00 0.00 44.57 4.02
89 90 0.322098 TAACATTGGTCGGCCCACAG 60.322 55.000 2.12 0.00 45.19 3.66
100 101 0.951040 GGCCCACAGTCAAGAAGTCG 60.951 60.000 0.00 0.00 0.00 4.18
108 109 2.225963 CAGTCAAGAAGTCGTAGGTCGT 59.774 50.000 0.00 0.00 40.80 4.34
109 110 2.883386 AGTCAAGAAGTCGTAGGTCGTT 59.117 45.455 0.00 0.00 40.80 3.85
120 121 6.276091 AGTCGTAGGTCGTTTCTTTTAAGTT 58.724 36.000 0.00 0.00 40.80 2.66
122 123 8.084684 AGTCGTAGGTCGTTTCTTTTAAGTTAT 58.915 33.333 0.00 0.00 40.80 1.89
126 127 7.198306 AGGTCGTTTCTTTTAAGTTATGTGG 57.802 36.000 0.00 0.00 0.00 4.17
129 130 6.577427 GTCGTTTCTTTTAAGTTATGTGGCAG 59.423 38.462 0.00 0.00 0.00 4.85
175 176 1.067060 GGCCGGCATGACCTTTTTATC 59.933 52.381 30.85 0.45 35.61 1.75
204 206 4.402851 CCATGTCGGCCCATATGG 57.597 61.111 15.41 15.41 34.68 2.74
230 232 2.435805 GTCTGGGTCAATCTAGCCATCA 59.564 50.000 0.00 0.00 45.54 3.07
234 239 3.010027 TGGGTCAATCTAGCCATCACAAA 59.990 43.478 0.00 0.00 41.99 2.83
261 266 4.779993 ACCTTCCTCCTATGTCCAAATC 57.220 45.455 0.00 0.00 0.00 2.17
306 311 7.148787 CGCCTTAAGCACTACTTATAGCATTAC 60.149 40.741 0.00 0.00 44.04 1.89
307 312 7.148787 GCCTTAAGCACTACTTATAGCATTACG 60.149 40.741 0.00 0.00 40.55 3.18
317 322 5.837438 ACTTATAGCATTACGGGTAGAAGGT 59.163 40.000 10.32 0.00 41.74 3.50
342 347 1.515954 CCACGGTTCGCTAGGACAT 59.484 57.895 0.00 0.00 0.00 3.06
382 387 2.834638 ATTCCTCCCATTGGTTCTGG 57.165 50.000 1.20 0.00 0.00 3.86
383 388 1.455822 TTCCTCCCATTGGTTCTGGT 58.544 50.000 1.20 0.00 31.44 4.00
388 393 2.308866 CTCCCATTGGTTCTGGTAACCT 59.691 50.000 8.29 0.00 40.88 3.50
392 397 3.509967 CCATTGGTTCTGGTAACCTTTCC 59.490 47.826 8.29 0.00 40.88 3.13
409 414 1.533033 CCCTCCGGTTTTTGGGCTT 60.533 57.895 0.00 0.00 32.49 4.35
413 418 1.068921 CCGGTTTTTGGGCTTGGTG 59.931 57.895 0.00 0.00 0.00 4.17
416 421 1.804746 CGGTTTTTGGGCTTGGTGTTC 60.805 52.381 0.00 0.00 0.00 3.18
421 426 0.178992 TTGGGCTTGGTGTTCTCTGG 60.179 55.000 0.00 0.00 0.00 3.86
423 428 0.178990 GGGCTTGGTGTTCTCTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
424 429 1.692411 GGCTTGGTGTTCTCTGGTTT 58.308 50.000 0.00 0.00 0.00 3.27
425 430 1.609072 GGCTTGGTGTTCTCTGGTTTC 59.391 52.381 0.00 0.00 0.00 2.78
426 431 2.576615 GCTTGGTGTTCTCTGGTTTCT 58.423 47.619 0.00 0.00 0.00 2.52
427 432 2.952310 GCTTGGTGTTCTCTGGTTTCTT 59.048 45.455 0.00 0.00 0.00 2.52
429 434 3.208747 TGGTGTTCTCTGGTTTCTTCC 57.791 47.619 0.00 0.00 0.00 3.46
430 435 2.507886 TGGTGTTCTCTGGTTTCTTCCA 59.492 45.455 0.00 0.00 36.00 3.53
577 588 9.393512 AGTTTTCATGAACAATTTTCAAATCCA 57.606 25.926 7.89 0.00 31.94 3.41
580 591 7.367159 TCATGAACAATTTTCAAATCCATGC 57.633 32.000 0.00 0.00 31.68 4.06
582 593 7.444487 TCATGAACAATTTTCAAATCCATGCAA 59.556 29.630 0.00 0.00 31.68 4.08
603 615 9.896263 ATGCAATTTTTAAAATTCATGAACACC 57.104 25.926 11.07 0.00 0.00 4.16
615 627 8.550710 AATTCATGAACACCATTAAATTGTGG 57.449 30.769 11.07 3.86 41.35 4.17
616 628 6.907853 TCATGAACACCATTAAATTGTGGA 57.092 33.333 10.72 0.00 38.86 4.02
618 630 7.905265 TCATGAACACCATTAAATTGTGGAAT 58.095 30.769 10.72 0.00 38.86 3.01
635 649 7.769272 TGTGGAATTTTTGAAAGTTCATGAC 57.231 32.000 11.97 7.14 36.64 3.06
702 732 7.170320 CCTTTTCTGAACTCATGAACAATTTGG 59.830 37.037 0.00 0.00 0.00 3.28
707 737 8.256605 TCTGAACTCATGAACAATTTGGAAAAA 58.743 29.630 0.00 0.00 0.00 1.94
769 875 6.854496 AACTTGTTTCGAATTGCTACAGTA 57.146 33.333 0.00 0.00 0.00 2.74
772 878 3.998341 TGTTTCGAATTGCTACAGTACCC 59.002 43.478 0.00 0.00 0.00 3.69
792 898 1.335597 CCGTGTCGCTACAAAGACTGA 60.336 52.381 0.00 0.00 37.36 3.41
793 899 1.979469 CGTGTCGCTACAAAGACTGAG 59.021 52.381 0.00 0.00 37.36 3.35
794 900 2.329379 GTGTCGCTACAAAGACTGAGG 58.671 52.381 0.00 0.00 37.36 3.86
797 903 1.199327 TCGCTACAAAGACTGAGGTCG 59.801 52.381 0.00 0.00 46.29 4.79
799 905 1.067495 GCTACAAAGACTGAGGTCGCT 60.067 52.381 0.00 0.00 46.29 4.93
802 908 0.601046 CAAAGACTGAGGTCGCTGCA 60.601 55.000 0.00 0.00 46.29 4.41
803 909 0.320247 AAAGACTGAGGTCGCTGCAG 60.320 55.000 10.11 10.11 46.29 4.41
804 910 1.467678 AAGACTGAGGTCGCTGCAGT 61.468 55.000 16.64 0.00 46.29 4.40
805 911 0.609406 AGACTGAGGTCGCTGCAGTA 60.609 55.000 16.64 0.57 46.29 2.74
806 912 0.456995 GACTGAGGTCGCTGCAGTAC 60.457 60.000 16.64 13.70 42.47 2.73
808 914 0.174389 CTGAGGTCGCTGCAGTACAT 59.826 55.000 16.64 11.78 0.00 2.29
809 915 0.608130 TGAGGTCGCTGCAGTACATT 59.392 50.000 16.64 6.46 0.00 2.71
810 916 1.281899 GAGGTCGCTGCAGTACATTC 58.718 55.000 16.64 11.30 0.00 2.67
811 917 0.458543 AGGTCGCTGCAGTACATTCG 60.459 55.000 16.64 9.22 0.00 3.34
812 918 0.457853 GGTCGCTGCAGTACATTCGA 60.458 55.000 16.64 11.59 32.85 3.71
813 919 0.917259 GTCGCTGCAGTACATTCGAG 59.083 55.000 16.64 0.00 34.98 4.04
814 920 0.808755 TCGCTGCAGTACATTCGAGA 59.191 50.000 16.64 0.00 31.98 4.04
815 921 0.917259 CGCTGCAGTACATTCGAGAC 59.083 55.000 16.64 0.00 0.00 3.36
816 922 0.917259 GCTGCAGTACATTCGAGACG 59.083 55.000 16.64 0.00 0.00 4.18
817 923 0.917259 CTGCAGTACATTCGAGACGC 59.083 55.000 5.25 0.00 0.00 5.19
818 924 0.242555 TGCAGTACATTCGAGACGCA 59.757 50.000 0.00 0.00 0.00 5.24
819 925 1.336424 TGCAGTACATTCGAGACGCAA 60.336 47.619 0.00 0.00 0.00 4.85
820 926 1.059264 GCAGTACATTCGAGACGCAAC 59.941 52.381 0.00 0.00 0.00 4.17
822 928 2.090658 CAGTACATTCGAGACGCAACAC 59.909 50.000 0.00 0.00 0.00 3.32
823 929 2.055838 GTACATTCGAGACGCAACACA 58.944 47.619 0.00 0.00 0.00 3.72
824 930 1.139989 ACATTCGAGACGCAACACAG 58.860 50.000 0.00 0.00 0.00 3.66
825 931 1.269569 ACATTCGAGACGCAACACAGA 60.270 47.619 0.00 0.00 0.00 3.41
826 932 1.125021 CATTCGAGACGCAACACAGAC 59.875 52.381 0.00 0.00 0.00 3.51
828 934 2.022129 CGAGACGCAACACAGACCC 61.022 63.158 0.00 0.00 0.00 4.46
829 935 1.668151 GAGACGCAACACAGACCCC 60.668 63.158 0.00 0.00 0.00 4.95
832 938 3.345808 CGCAACACAGACCCCACG 61.346 66.667 0.00 0.00 0.00 4.94
833 939 2.978010 GCAACACAGACCCCACGG 60.978 66.667 0.00 0.00 0.00 4.94
835 941 1.749665 CAACACAGACCCCACGGTA 59.250 57.895 0.00 0.00 44.88 4.02
836 942 0.601841 CAACACAGACCCCACGGTAC 60.602 60.000 0.00 0.00 44.88 3.34
837 943 0.761702 AACACAGACCCCACGGTACT 60.762 55.000 0.00 0.00 44.88 2.73
838 944 1.183676 ACACAGACCCCACGGTACTC 61.184 60.000 0.00 0.00 44.88 2.59
839 945 1.608627 ACAGACCCCACGGTACTCC 60.609 63.158 0.00 0.00 44.88 3.85
897 1003 1.593750 GGGATGCTCTGTGCGCTAG 60.594 63.158 9.73 7.49 46.63 3.42
909 1015 2.483877 TGTGCGCTAGAATGAAAACTGG 59.516 45.455 9.73 0.00 0.00 4.00
913 1019 1.740025 GCTAGAATGAAAACTGGCGCT 59.260 47.619 7.64 0.00 31.80 5.92
1109 1223 2.202440 CGTCGACACGCGGAATCT 60.202 61.111 17.16 0.00 39.69 2.40
1119 1233 0.031585 CGCGGAATCTGATTACCCGA 59.968 55.000 25.74 0.00 42.49 5.14
1306 1439 2.264005 TTATCCTGTGTGCCGTTGTT 57.736 45.000 0.00 0.00 0.00 2.83
1307 1440 1.518325 TATCCTGTGTGCCGTTGTTG 58.482 50.000 0.00 0.00 0.00 3.33
1413 1554 2.260434 GCACATGGCCAGCACAAG 59.740 61.111 13.05 0.00 36.11 3.16
1477 1618 7.598493 CCATTTTACAGGTTAGTGTGGATTTTG 59.402 37.037 0.00 0.00 31.46 2.44
1620 1771 5.187772 GGGATGGAAGAAATAGGCTGTTTTT 59.812 40.000 10.68 2.23 0.00 1.94
1742 1905 2.356135 GCTGCTCGGACCATAGAAAAA 58.644 47.619 0.00 0.00 0.00 1.94
1743 1906 2.352960 GCTGCTCGGACCATAGAAAAAG 59.647 50.000 0.00 0.00 0.00 2.27
1930 2095 9.651913 AATTCGTAAAATCAATGCCAATAAACT 57.348 25.926 0.00 0.00 0.00 2.66
2032 2197 8.685838 TTTGGATTAGAGGTAATATTTTCCCG 57.314 34.615 0.00 0.00 0.00 5.14
2102 2276 1.956477 TGCAGACTTCTCCTTTTTGGC 59.044 47.619 0.00 0.00 35.26 4.52
2139 2313 7.518848 GCATAGACGCATAATGAAGATGTGAAA 60.519 37.037 3.37 0.00 38.04 2.69
2142 2338 8.437360 AGACGCATAATGAAGATGTGAAATTA 57.563 30.769 3.37 0.00 38.04 1.40
2179 2375 7.035004 TGGTGAAACAAAACTTGAAATCAGAG 58.965 34.615 0.00 0.00 39.98 3.35
2439 2644 1.674962 ACTCACTCGCCGTATTAGGAC 59.325 52.381 0.00 0.00 0.00 3.85
2553 2892 2.604118 GCCCTTGCCTACAGGTCTA 58.396 57.895 0.00 0.00 37.57 2.59
2627 2981 0.928726 TATGGGGCTGGGTTTGGGAT 60.929 55.000 0.00 0.00 0.00 3.85
2871 3225 2.348411 ATGGCACCAATAGTACTGGC 57.652 50.000 5.39 1.08 37.48 4.85
2891 3245 1.670811 CGGTGATTCGCAAGGCTTAAT 59.329 47.619 0.00 0.00 38.47 1.40
3096 3450 2.431683 GGTTGCTGCCAGTCCTCA 59.568 61.111 0.00 0.00 0.00 3.86
3143 3497 1.065199 CACCACATCCATGCCAGTACT 60.065 52.381 0.00 0.00 0.00 2.73
3190 3544 3.932580 TTCAGCCCGTGCAGCTACG 62.933 63.158 1.93 1.93 38.95 3.51
3473 3842 5.149273 GTGCAAAGGTATGAATATGCATCG 58.851 41.667 0.19 0.00 44.51 3.84
3475 3844 4.726416 CAAAGGTATGAATATGCATCGCC 58.274 43.478 0.19 4.38 0.00 5.54
3476 3845 3.701205 AGGTATGAATATGCATCGCCA 57.299 42.857 0.19 0.00 0.00 5.69
3499 3907 9.468532 GCCAAAATTCCAGATATATTCTTGTTC 57.531 33.333 0.00 0.00 29.93 3.18
3507 3915 7.345653 TCCAGATATATTCTTGTTCCTGTCAGT 59.654 37.037 0.00 0.00 29.93 3.41
3807 4219 4.340666 TGCACACCAAATGTTCACATACTT 59.659 37.500 0.00 0.00 40.64 2.24
3808 4220 5.532779 TGCACACCAAATGTTCACATACTTA 59.467 36.000 0.00 0.00 40.64 2.24
3869 4281 3.738281 CGAGTCATACAAGGCCAACTAGG 60.738 52.174 5.01 0.00 41.84 3.02
4223 4673 1.238439 TCAGAAAAGAAAGCTGGCGG 58.762 50.000 0.00 0.00 0.00 6.13
4675 5126 0.649475 CTCAAGAATCGGCAGAAGCG 59.351 55.000 0.00 0.00 43.41 4.68
4741 5192 4.574013 GGAGATGTCAAGTCCATGAACATC 59.426 45.833 0.00 5.82 37.70 3.06
4900 5351 0.238553 TCACAGAGAAGAGCGACGTG 59.761 55.000 0.00 0.00 0.00 4.49
4914 5365 2.813908 CGTGTACAGCTTCGGGGC 60.814 66.667 0.00 0.00 0.00 5.80
5005 5456 1.522580 GTCATCCTTCCTGCTCGCC 60.523 63.158 0.00 0.00 0.00 5.54
5013 5464 0.543277 TTCCTGCTCGCCATGAAGAT 59.457 50.000 0.00 0.00 0.00 2.40
5035 5486 0.618968 AGAACCTCGAGGGCATCCTT 60.619 55.000 34.04 18.68 45.05 3.36
5044 5495 2.367202 GGGCATCCTTGACCCGAGA 61.367 63.158 0.00 0.00 46.49 4.04
5164 5615 3.435186 GCCGACAAGCTGAAGGCC 61.435 66.667 10.56 0.00 43.05 5.19
5272 5723 2.111999 CTTGGTGCCCTCCGTCTTCA 62.112 60.000 0.00 0.00 0.00 3.02
5275 5726 2.119611 TGCCCTCCGTCTTCAGGA 59.880 61.111 0.00 0.00 36.20 3.86
5285 5736 1.747552 CGTCTTCAGGATCCTCCTCGA 60.748 57.143 12.69 2.91 45.66 4.04
5286 5737 2.593026 GTCTTCAGGATCCTCCTCGAT 58.407 52.381 12.69 0.00 45.66 3.59
5348 12710 6.473778 CAGATGATGGAGTAGTTACGTTTGAG 59.526 42.308 0.00 0.00 0.00 3.02
5353 12715 4.202284 TGGAGTAGTTACGTTTGAGCCTTT 60.202 41.667 0.00 0.00 0.00 3.11
5361 12723 2.494073 ACGTTTGAGCCTTTCACCAAAA 59.506 40.909 0.00 0.00 34.94 2.44
5370 12732 5.683681 AGCCTTTCACCAAAAATGACAAAT 58.316 33.333 0.00 0.00 0.00 2.32
5382 12744 8.859156 CCAAAAATGACAAATTAATCTACCGTG 58.141 33.333 0.00 0.00 0.00 4.94
5422 12791 6.116126 AGCTAAGTAAATGTTCTCATGGGAC 58.884 40.000 0.00 0.00 34.19 4.46
5434 12803 1.202758 TCATGGGACCTGTGTGTGTTC 60.203 52.381 0.00 0.00 0.00 3.18
5446 12815 1.260297 TGTGTGTTCTGCGTTTCATCG 59.740 47.619 0.00 0.00 0.00 3.84
5478 12847 3.349006 GACGGGCTATGCGGCATG 61.349 66.667 24.99 15.30 40.61 4.06
5499 12869 1.149148 GAGTTCTCAGTTTCGGGTGC 58.851 55.000 0.00 0.00 0.00 5.01
5502 12872 0.319555 TTCTCAGTTTCGGGTGCGAG 60.320 55.000 0.00 0.00 0.00 5.03
5514 12884 0.030235 GGTGCGAGGGAACACAAAAC 59.970 55.000 0.00 0.00 38.57 2.43
5520 12890 2.544267 CGAGGGAACACAAAACTCAGTC 59.456 50.000 0.00 0.00 0.00 3.51
5552 12926 4.122046 TCAGTATGAGAATTCGCACATGG 58.878 43.478 14.40 5.39 42.56 3.66
5553 12927 4.122046 CAGTATGAGAATTCGCACATGGA 58.878 43.478 14.40 0.00 39.69 3.41
5554 12928 4.025396 CAGTATGAGAATTCGCACATGGAC 60.025 45.833 14.40 9.95 39.69 4.02
5555 12929 1.737838 TGAGAATTCGCACATGGACC 58.262 50.000 7.89 0.00 0.00 4.46
5556 12930 1.003003 TGAGAATTCGCACATGGACCA 59.997 47.619 7.89 0.00 0.00 4.02
5557 12931 1.398390 GAGAATTCGCACATGGACCAC 59.602 52.381 4.11 0.00 0.00 4.16
5558 12932 0.451783 GAATTCGCACATGGACCACC 59.548 55.000 0.00 0.00 0.00 4.61
5595 12969 1.473677 TGTTGCTCAACTATGCATGCC 59.526 47.619 16.68 0.00 41.67 4.40
5618 12997 6.438763 CCTAACTGAATTTTGTGTTCCTGAC 58.561 40.000 0.00 0.00 0.00 3.51
5619 12998 4.918810 ACTGAATTTTGTGTTCCTGACC 57.081 40.909 0.00 0.00 0.00 4.02
5620 12999 4.536765 ACTGAATTTTGTGTTCCTGACCT 58.463 39.130 0.00 0.00 0.00 3.85
5622 13001 6.306987 ACTGAATTTTGTGTTCCTGACCTAT 58.693 36.000 0.00 0.00 0.00 2.57
5626 13005 8.106462 TGAATTTTGTGTTCCTGACCTATGATA 58.894 33.333 0.00 0.00 0.00 2.15
5632 13011 6.040955 TGTGTTCCTGACCTATGATATGACTC 59.959 42.308 0.00 0.00 0.00 3.36
5647 13026 7.267857 TGATATGACTCTGAATCGTGTCAAAT 58.732 34.615 5.48 0.00 39.79 2.32
5653 13032 5.636965 ACTCTGAATCGTGTCAAATCTCAAG 59.363 40.000 0.00 0.00 0.00 3.02
5654 13033 4.931601 TCTGAATCGTGTCAAATCTCAAGG 59.068 41.667 0.00 0.00 0.00 3.61
5671 13052 5.072329 TCTCAAGGTCCTTTCTTTCTGTCAT 59.928 40.000 0.00 0.00 0.00 3.06
5672 13053 5.065914 TCAAGGTCCTTTCTTTCTGTCATG 58.934 41.667 0.00 0.00 0.00 3.07
5673 13054 4.026356 AGGTCCTTTCTTTCTGTCATGG 57.974 45.455 0.00 0.00 0.00 3.66
5677 14114 5.181433 GGTCCTTTCTTTCTGTCATGGTAAC 59.819 44.000 0.00 0.00 0.00 2.50
5684 14121 8.463930 TTCTTTCTGTCATGGTAACTGAATTT 57.536 30.769 6.29 0.00 35.42 1.82
5695 14132 8.522830 CATGGTAACTGAATTTTGTGTTCCTAT 58.477 33.333 0.00 0.00 37.61 2.57
5701 14138 8.408043 ACTGAATTTTGTGTTCCTATGAATGA 57.592 30.769 0.00 0.00 31.98 2.57
5702 14139 8.859090 ACTGAATTTTGTGTTCCTATGAATGAA 58.141 29.630 0.00 0.00 31.98 2.57
5703 14140 9.865321 CTGAATTTTGTGTTCCTATGAATGAAT 57.135 29.630 0.00 0.00 31.98 2.57
5707 14144 8.815141 TTTTGTGTTCCTATGAATGAATTGTG 57.185 30.769 0.00 0.00 31.98 3.33
5747 14192 1.888512 CTTCCCAACATTGGTGGTGAG 59.111 52.381 19.26 12.17 46.22 3.51
5748 14193 0.850100 TCCCAACATTGGTGGTGAGT 59.150 50.000 19.26 0.00 46.22 3.41
5749 14194 0.961019 CCCAACATTGGTGGTGAGTG 59.039 55.000 19.26 0.00 46.22 3.51
5750 14195 1.478471 CCCAACATTGGTGGTGAGTGA 60.478 52.381 19.26 0.00 46.22 3.41
5751 14196 1.608590 CCAACATTGGTGGTGAGTGAC 59.391 52.381 12.88 0.00 46.22 3.67
5752 14197 1.608590 CAACATTGGTGGTGAGTGACC 59.391 52.381 0.00 0.00 46.22 4.02
5753 14198 0.110486 ACATTGGTGGTGAGTGACCC 59.890 55.000 0.00 0.00 45.45 4.46
5754 14199 0.401738 CATTGGTGGTGAGTGACCCT 59.598 55.000 0.00 0.00 45.45 4.34
5781 14226 1.656652 ATGTAGCACATCGCCTTGTC 58.343 50.000 0.00 0.00 44.04 3.18
5786 14231 1.077501 CACATCGCCTTGTCCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
5787 14232 0.680921 CACATCGCCTTGTCCCCATT 60.681 55.000 0.00 0.00 0.00 3.16
5788 14233 0.039618 ACATCGCCTTGTCCCCATTT 59.960 50.000 0.00 0.00 0.00 2.32
5812 14257 4.548494 TCGTGTTGTTATCGACAGCTTTA 58.452 39.130 0.00 0.00 39.88 1.85
5868 14455 3.366724 TGTACAACTGACGCATCGATTTC 59.633 43.478 0.00 0.00 0.00 2.17
5870 14457 3.067106 ACAACTGACGCATCGATTTCTT 58.933 40.909 0.00 0.00 0.00 2.52
5871 14458 3.498397 ACAACTGACGCATCGATTTCTTT 59.502 39.130 0.00 0.00 0.00 2.52
5872 14459 4.024048 ACAACTGACGCATCGATTTCTTTT 60.024 37.500 0.00 0.00 0.00 2.27
5873 14460 4.749245 ACTGACGCATCGATTTCTTTTT 57.251 36.364 0.00 0.00 0.00 1.94
5917 14504 1.136336 GCGATCAACGACCACAAGTTC 60.136 52.381 0.00 0.00 45.77 3.01
5921 14508 4.566759 CGATCAACGACCACAAGTTCATAT 59.433 41.667 0.00 0.00 45.77 1.78
5923 14510 6.420903 CGATCAACGACCACAAGTTCATATAT 59.579 38.462 0.00 0.00 45.77 0.86
5924 14511 6.902224 TCAACGACCACAAGTTCATATATG 57.098 37.500 6.36 6.36 0.00 1.78
5925 14512 6.403049 TCAACGACCACAAGTTCATATATGT 58.597 36.000 12.42 0.00 0.00 2.29
5928 14515 7.072177 ACGACCACAAGTTCATATATGTTTG 57.928 36.000 12.42 15.71 0.00 2.93
5929 14516 5.965334 CGACCACAAGTTCATATATGTTTGC 59.035 40.000 12.42 2.39 0.00 3.68
5931 14518 7.225784 ACCACAAGTTCATATATGTTTGCAA 57.774 32.000 12.42 0.00 0.00 4.08
5932 14519 7.315142 ACCACAAGTTCATATATGTTTGCAAG 58.685 34.615 12.42 9.85 0.00 4.01
5933 14520 6.254157 CCACAAGTTCATATATGTTTGCAAGC 59.746 38.462 12.42 6.31 0.00 4.01
5934 14521 6.807720 CACAAGTTCATATATGTTTGCAAGCA 59.192 34.615 18.67 18.67 0.00 3.91
5935 14522 7.328982 CACAAGTTCATATATGTTTGCAAGCAA 59.671 33.333 20.20 9.89 0.00 3.91
5936 14523 7.871973 ACAAGTTCATATATGTTTGCAAGCAAA 59.128 29.630 20.20 15.59 42.77 3.68
5946 14533 2.427232 TGCAAGCAAACAATCAGAGC 57.573 45.000 0.00 0.00 0.00 4.09
5949 14536 2.288030 GCAAGCAAACAATCAGAGCAGT 60.288 45.455 0.00 0.00 0.00 4.40
5961 14548 4.715534 TCAGAGCAGTAGGATAGTAGCT 57.284 45.455 0.00 0.00 33.27 3.32
5964 14551 5.998981 TCAGAGCAGTAGGATAGTAGCTAAC 59.001 44.000 0.00 0.00 31.62 2.34
5987 14574 6.385443 ACTATCTCATTCATACTCCCTCCAA 58.615 40.000 0.00 0.00 0.00 3.53
5988 14575 5.822132 ATCTCATTCATACTCCCTCCAAG 57.178 43.478 0.00 0.00 0.00 3.61
5989 14576 4.624913 TCTCATTCATACTCCCTCCAAGT 58.375 43.478 0.00 0.00 0.00 3.16
5990 14577 4.651503 TCTCATTCATACTCCCTCCAAGTC 59.348 45.833 0.00 0.00 0.00 3.01
5991 14578 4.624913 TCATTCATACTCCCTCCAAGTCT 58.375 43.478 0.00 0.00 0.00 3.24
5992 14579 4.651503 TCATTCATACTCCCTCCAAGTCTC 59.348 45.833 0.00 0.00 0.00 3.36
5993 14580 3.033659 TCATACTCCCTCCAAGTCTCC 57.966 52.381 0.00 0.00 0.00 3.71
5994 14581 2.314852 TCATACTCCCTCCAAGTCTCCA 59.685 50.000 0.00 0.00 0.00 3.86
6010 14597 2.092807 TCTCCAACCGGGTTTATAAGGC 60.093 50.000 10.33 0.00 38.11 4.35
6011 14598 1.018910 CCAACCGGGTTTATAAGGCG 58.981 55.000 10.33 0.00 0.00 5.52
6012 14599 1.018910 CAACCGGGTTTATAAGGCGG 58.981 55.000 10.33 0.00 0.00 6.13
6013 14600 0.107066 AACCGGGTTTATAAGGCGGG 60.107 55.000 6.59 0.00 0.00 6.13
6017 14604 1.071071 CGGGTTTATAAGGCGGGATCA 59.929 52.381 0.00 0.00 0.00 2.92
6035 14622 6.292703 CGGGATCATCGTATTTTAGGTTGAAC 60.293 42.308 0.00 0.00 0.00 3.18
6038 14625 8.674607 GGATCATCGTATTTTAGGTTGAACTTT 58.325 33.333 0.00 0.00 0.00 2.66
6041 14667 6.563222 TCGTATTTTAGGTTGAACTTTGGG 57.437 37.500 0.00 0.00 0.00 4.12
6044 14670 5.823861 ATTTTAGGTTGAACTTTGGGCAT 57.176 34.783 0.00 0.00 0.00 4.40
6045 14671 4.599047 TTTAGGTTGAACTTTGGGCATG 57.401 40.909 0.00 0.00 0.00 4.06
6052 14678 2.225343 TGAACTTTGGGCATGGATCCTT 60.225 45.455 14.23 3.29 0.00 3.36
6054 14680 3.756082 ACTTTGGGCATGGATCCTTTA 57.244 42.857 14.23 0.00 0.00 1.85
6056 14682 2.754012 TTGGGCATGGATCCTTTAGG 57.246 50.000 14.23 0.00 0.00 2.69
6060 14686 0.108585 GCATGGATCCTTTAGGGCGA 59.891 55.000 14.23 0.00 35.41 5.54
6072 14698 7.406031 TCCTTTAGGGCGAGTCAATATATAG 57.594 40.000 0.00 0.00 35.41 1.31
6073 14699 6.043411 CCTTTAGGGCGAGTCAATATATAGC 58.957 44.000 0.00 0.00 0.00 2.97
6074 14700 5.593679 TTAGGGCGAGTCAATATATAGCC 57.406 43.478 0.00 0.00 42.10 3.93
6075 14701 3.441101 AGGGCGAGTCAATATATAGCCA 58.559 45.455 5.91 0.00 44.40 4.75
6076 14702 3.449018 AGGGCGAGTCAATATATAGCCAG 59.551 47.826 5.91 0.00 44.40 4.85
6077 14703 3.190874 GGCGAGTCAATATATAGCCAGC 58.809 50.000 0.00 0.00 42.37 4.85
6078 14704 3.118956 GGCGAGTCAATATATAGCCAGCT 60.119 47.826 0.00 0.00 42.37 4.24
6079 14705 4.098044 GGCGAGTCAATATATAGCCAGCTA 59.902 45.833 1.10 1.10 42.37 3.32
6080 14706 5.277825 GCGAGTCAATATATAGCCAGCTAG 58.722 45.833 5.49 0.00 31.45 3.42
6117 14743 3.311110 GTGGTGGAGCGGGTCTCA 61.311 66.667 7.19 0.97 43.70 3.27
6118 14744 2.284625 TGGTGGAGCGGGTCTCAT 60.285 61.111 7.19 0.00 43.70 2.90
6119 14745 2.359169 TGGTGGAGCGGGTCTCATC 61.359 63.158 7.19 4.80 43.70 2.92
6120 14746 2.501610 GTGGAGCGGGTCTCATCC 59.498 66.667 7.19 0.00 43.70 3.51
6140 15091 4.866921 TCCCATCTCATCGTACATAAACG 58.133 43.478 0.00 0.00 44.19 3.60
6145 15096 5.441709 TCTCATCGTACATAAACGCCATA 57.558 39.130 0.00 0.00 42.56 2.74
6146 15097 6.020971 TCTCATCGTACATAAACGCCATAT 57.979 37.500 0.00 0.00 42.56 1.78
6147 15098 7.148355 TCTCATCGTACATAAACGCCATATA 57.852 36.000 0.00 0.00 42.56 0.86
6148 15099 7.768240 TCTCATCGTACATAAACGCCATATAT 58.232 34.615 0.00 0.00 42.56 0.86
6164 15115 2.947127 ATATCTCCCTGCTTGCTTCC 57.053 50.000 0.00 0.00 0.00 3.46
6170 15121 2.610519 CCTGCTTGCTTCCCCCTCT 61.611 63.158 0.00 0.00 0.00 3.69
6204 15155 2.113774 CACAGGCACAAGGAGGCA 59.886 61.111 0.00 0.00 0.00 4.75
6248 15199 4.444081 AGGGAGGGAGGGTCGACG 62.444 72.222 9.92 0.00 0.00 5.12
6249 15200 4.437587 GGGAGGGAGGGTCGACGA 62.438 72.222 9.92 0.00 0.00 4.20
6251 15202 2.360852 GAGGGAGGGTCGACGACA 60.361 66.667 27.77 0.00 33.68 4.35
6253 15204 4.131088 GGGAGGGTCGACGACAGC 62.131 72.222 27.77 16.00 33.68 4.40
6254 15205 4.131088 GGAGGGTCGACGACAGCC 62.131 72.222 27.77 20.33 33.68 4.85
6257 15208 4.047059 GGGTCGACGACAGCCGAA 62.047 66.667 27.77 0.00 41.76 4.30
6258 15209 2.504244 GGTCGACGACAGCCGAAG 60.504 66.667 27.77 0.00 41.76 3.79
6259 15210 3.173240 GTCGACGACAGCCGAAGC 61.173 66.667 22.66 0.00 41.76 3.86
6260 15211 4.753877 TCGACGACAGCCGAAGCG 62.754 66.667 0.00 0.00 46.67 4.68
6305 15256 3.429141 CTGCTCACTGCTTGCGGG 61.429 66.667 6.39 0.00 43.37 6.13
6306 15257 4.254709 TGCTCACTGCTTGCGGGT 62.255 61.111 6.39 0.00 43.37 5.28
6307 15258 2.047274 GCTCACTGCTTGCGGGTA 60.047 61.111 6.39 0.00 38.95 3.69
6308 15259 2.391389 GCTCACTGCTTGCGGGTAC 61.391 63.158 6.39 0.00 38.95 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.877564 CCTAAAAAGGCCAAAACAGTCAAAA 59.122 36.000 5.01 0.00 0.00 2.44
3 4 3.386402 CCCTAAAAAGGCCAAAACAGTCA 59.614 43.478 5.01 0.00 0.00 3.41
5 6 2.703536 CCCCTAAAAAGGCCAAAACAGT 59.296 45.455 5.01 0.00 0.00 3.55
7 8 2.701423 GACCCCTAAAAAGGCCAAAACA 59.299 45.455 5.01 0.00 0.00 2.83
8 9 2.701423 TGACCCCTAAAAAGGCCAAAAC 59.299 45.455 5.01 0.00 0.00 2.43
9 10 3.047695 TGACCCCTAAAAAGGCCAAAA 57.952 42.857 5.01 0.00 0.00 2.44
10 11 2.777459 TGACCCCTAAAAAGGCCAAA 57.223 45.000 5.01 0.00 0.00 3.28
11 12 2.777459 TTGACCCCTAAAAAGGCCAA 57.223 45.000 5.01 0.00 0.00 4.52
12 13 2.903135 CAATTGACCCCTAAAAAGGCCA 59.097 45.455 5.01 0.00 0.00 5.36
13 14 3.169908 TCAATTGACCCCTAAAAAGGCC 58.830 45.455 3.38 0.00 0.00 5.19
28 29 5.567138 AAAGGACCGAAATAGCTCAATTG 57.433 39.130 0.00 0.00 0.00 2.32
30 31 5.823045 CCTAAAAGGACCGAAATAGCTCAAT 59.177 40.000 0.00 0.00 37.67 2.57
34 35 4.838904 ACCTAAAAGGACCGAAATAGCT 57.161 40.909 0.00 0.00 37.67 3.32
52 53 8.154203 CCAATGTTAAAAGGGTCAAAATAACCT 58.846 33.333 0.00 0.00 36.97 3.50
80 81 0.951040 GACTTCTTGACTGTGGGCCG 60.951 60.000 0.00 0.00 0.00 6.13
89 90 2.985406 ACGACCTACGACTTCTTGAC 57.015 50.000 0.00 0.00 45.77 3.18
100 101 8.225777 CCACATAACTTAAAAGAAACGACCTAC 58.774 37.037 0.00 0.00 0.00 3.18
108 109 5.538433 AGCCTGCCACATAACTTAAAAGAAA 59.462 36.000 0.00 0.00 0.00 2.52
109 110 5.048083 CAGCCTGCCACATAACTTAAAAGAA 60.048 40.000 0.00 0.00 0.00 2.52
120 121 2.998097 GGACCAGCCTGCCACATA 59.002 61.111 0.00 0.00 0.00 2.29
163 164 4.457603 CACAACCCATCGATAAAAAGGTCA 59.542 41.667 0.00 0.00 0.00 4.02
168 169 3.157881 TGGCACAACCCATCGATAAAAA 58.842 40.909 0.00 0.00 37.83 1.94
209 211 2.435805 TGATGGCTAGATTGACCCAGAC 59.564 50.000 0.00 0.00 0.00 3.51
237 242 5.333566 TTTGGACATAGGAGGAAGGTTTT 57.666 39.130 0.00 0.00 0.00 2.43
240 245 3.459969 GGATTTGGACATAGGAGGAAGGT 59.540 47.826 0.00 0.00 0.00 3.50
241 246 3.181439 GGGATTTGGACATAGGAGGAAGG 60.181 52.174 0.00 0.00 0.00 3.46
251 256 1.285280 TCTGACGGGGATTTGGACAT 58.715 50.000 0.00 0.00 0.00 3.06
261 266 2.881074 CGCTAATATGATCTGACGGGG 58.119 52.381 0.00 0.00 0.00 5.73
306 311 4.278956 GTGTGCACCTTCTACCCG 57.721 61.111 15.69 0.00 0.00 5.28
324 329 0.742505 TATGTCCTAGCGAACCGTGG 59.257 55.000 0.00 0.00 0.00 4.94
327 332 2.800544 CCATTTATGTCCTAGCGAACCG 59.199 50.000 0.00 0.00 0.00 4.44
342 347 4.451544 GGGTTGGCAGCCCATTTA 57.548 55.556 31.94 0.00 45.40 1.40
360 365 4.232820 ACCAGAACCAATGGGAGGAATAAT 59.767 41.667 3.55 0.00 42.48 1.28
409 414 2.507886 TGGAAGAAACCAGAGAACACCA 59.492 45.455 0.00 0.00 34.77 4.17
413 418 5.836821 AAAAGTGGAAGAAACCAGAGAAC 57.163 39.130 0.00 0.00 40.85 3.01
577 588 9.896263 GGTGTTCATGAATTTTAAAAATTGCAT 57.104 25.926 12.12 0.00 0.00 3.96
610 622 7.821359 TGTCATGAACTTTCAAAAATTCCACAA 59.179 29.630 0.00 0.00 41.13 3.33
612 624 7.769272 TGTCATGAACTTTCAAAAATTCCAC 57.231 32.000 0.00 0.00 41.13 4.02
663 677 8.010733 AGTTCAGAAAAGGTTCATGAATTTCA 57.989 30.769 24.49 0.75 35.39 2.69
664 678 8.137437 TGAGTTCAGAAAAGGTTCATGAATTTC 58.863 33.333 18.87 18.87 35.39 2.17
677 707 7.922278 TCCAAATTGTTCATGAGTTCAGAAAAG 59.078 33.333 0.00 0.00 0.00 2.27
740 770 3.121696 GCAATTCGAAACAAGTTTGCTCG 60.122 43.478 19.51 9.45 37.18 5.03
744 774 5.971202 ACTGTAGCAATTCGAAACAAGTTTG 59.029 36.000 0.00 1.96 32.11 2.93
751 781 3.373130 GGGGTACTGTAGCAATTCGAAAC 59.627 47.826 17.71 0.00 0.00 2.78
756 786 2.277084 CACGGGGTACTGTAGCAATTC 58.723 52.381 17.71 1.53 34.02 2.17
769 875 1.005394 CTTTGTAGCGACACGGGGT 60.005 57.895 0.00 0.00 34.48 4.95
772 878 1.060713 CAGTCTTTGTAGCGACACGG 58.939 55.000 0.00 0.00 34.48 4.94
792 898 0.458543 CGAATGTACTGCAGCGACCT 60.459 55.000 15.27 2.28 32.77 3.85
793 899 0.457853 TCGAATGTACTGCAGCGACC 60.458 55.000 15.27 0.00 34.47 4.79
794 900 0.917259 CTCGAATGTACTGCAGCGAC 59.083 55.000 15.27 13.05 35.21 5.19
797 903 0.917259 CGTCTCGAATGTACTGCAGC 59.083 55.000 15.27 0.00 0.00 5.25
799 905 0.242555 TGCGTCTCGAATGTACTGCA 59.757 50.000 0.00 0.00 0.00 4.41
802 908 2.287970 TGTGTTGCGTCTCGAATGTACT 60.288 45.455 0.00 0.00 0.00 2.73
803 909 2.055838 TGTGTTGCGTCTCGAATGTAC 58.944 47.619 0.00 0.00 0.00 2.90
804 910 2.030628 TCTGTGTTGCGTCTCGAATGTA 60.031 45.455 0.00 0.00 0.00 2.29
805 911 1.139989 CTGTGTTGCGTCTCGAATGT 58.860 50.000 0.00 0.00 0.00 2.71
806 912 1.125021 GTCTGTGTTGCGTCTCGAATG 59.875 52.381 0.00 0.00 0.00 2.67
808 914 0.596600 GGTCTGTGTTGCGTCTCGAA 60.597 55.000 0.00 0.00 0.00 3.71
809 915 1.007734 GGTCTGTGTTGCGTCTCGA 60.008 57.895 0.00 0.00 0.00 4.04
810 916 2.022129 GGGTCTGTGTTGCGTCTCG 61.022 63.158 0.00 0.00 0.00 4.04
811 917 1.668151 GGGGTCTGTGTTGCGTCTC 60.668 63.158 0.00 0.00 0.00 3.36
812 918 2.426023 GGGGTCTGTGTTGCGTCT 59.574 61.111 0.00 0.00 0.00 4.18
813 919 2.110213 TGGGGTCTGTGTTGCGTC 59.890 61.111 0.00 0.00 0.00 5.19
814 920 2.203153 GTGGGGTCTGTGTTGCGT 60.203 61.111 0.00 0.00 0.00 5.24
815 921 3.345808 CGTGGGGTCTGTGTTGCG 61.346 66.667 0.00 0.00 0.00 4.85
816 922 2.386064 TACCGTGGGGTCTGTGTTGC 62.386 60.000 0.00 0.00 46.01 4.17
817 923 0.601841 GTACCGTGGGGTCTGTGTTG 60.602 60.000 0.00 0.00 46.01 3.33
818 924 0.761702 AGTACCGTGGGGTCTGTGTT 60.762 55.000 0.00 0.00 46.01 3.32
819 925 1.152398 AGTACCGTGGGGTCTGTGT 60.152 57.895 0.00 0.00 46.01 3.72
820 926 1.590147 GAGTACCGTGGGGTCTGTG 59.410 63.158 0.00 0.00 46.01 3.66
822 928 3.295800 GGAGTACCGTGGGGTCTG 58.704 66.667 0.00 0.00 46.01 3.51
832 938 2.759560 TAACGGGGGCGGAGTACC 60.760 66.667 0.00 0.00 0.00 3.34
833 939 2.288788 CTGTAACGGGGGCGGAGTAC 62.289 65.000 0.00 0.00 0.00 2.73
834 940 2.037049 TGTAACGGGGGCGGAGTA 59.963 61.111 0.00 0.00 0.00 2.59
835 941 3.387947 CTGTAACGGGGGCGGAGT 61.388 66.667 0.00 0.00 0.00 3.85
836 942 4.157120 CCTGTAACGGGGGCGGAG 62.157 72.222 0.00 0.00 0.00 4.63
840 946 4.484872 GGAGCCTGTAACGGGGGC 62.485 72.222 0.00 0.00 45.57 5.80
841 947 4.157120 CGGAGCCTGTAACGGGGG 62.157 72.222 0.00 0.00 0.00 5.40
897 1003 2.159517 CCTGTAGCGCCAGTTTTCATTC 60.160 50.000 2.29 0.00 0.00 2.67
913 1019 2.038690 CTCCTAATCGGCGCCTGTA 58.961 57.895 26.68 12.41 0.00 2.74
968 1082 2.342650 CGTGCTGGGTGGGGAATTG 61.343 63.158 0.00 0.00 0.00 2.32
1091 1205 3.245315 GATTCCGCGTGTCGACGG 61.245 66.667 11.62 8.54 46.20 4.79
1109 1223 1.105457 CGGGTAGTGTCGGGTAATCA 58.895 55.000 0.00 0.00 0.00 2.57
1119 1233 4.047059 CACGACGGCGGGTAGTGT 62.047 66.667 18.49 0.00 44.36 3.55
1153 1285 1.982395 CGTACCTCACAGGGCCTGA 60.982 63.158 38.99 17.89 40.58 3.86
1186 1318 4.738252 CGATAAGCAAGTAACTGCATCGTA 59.262 41.667 9.06 0.00 45.18 3.43
1292 1425 1.003972 CACTACAACAACGGCACACAG 60.004 52.381 0.00 0.00 0.00 3.66
1301 1434 2.450160 GTTGCAGTGCACTACAACAAC 58.550 47.619 39.65 32.21 45.18 3.32
1306 1439 1.869774 CAGAGTTGCAGTGCACTACA 58.130 50.000 21.20 18.41 38.71 2.74
1398 1535 2.025981 TCTATTCTTGTGCTGGCCATGT 60.026 45.455 5.51 0.00 0.00 3.21
1443 1584 7.778382 ACACTAACCTGTAAAATGGTTTTCTCT 59.222 33.333 2.66 0.00 43.27 3.10
1477 1618 5.636121 TGATTTCACATGTACGTAGTCAACC 59.364 40.000 0.00 0.00 43.93 3.77
1620 1771 3.727258 CCCCCATTCGCCACAGGA 61.727 66.667 0.00 0.00 0.00 3.86
1638 1789 3.057734 ACGCAACAACTAGCACTCTAAC 58.942 45.455 0.00 0.00 0.00 2.34
1711 1873 1.017387 CCGAGCAGCCCTTTTCATAC 58.983 55.000 0.00 0.00 0.00 2.39
1742 1905 8.362639 AGCGATTTATTAATGGATGCATTTTCT 58.637 29.630 18.12 5.89 0.00 2.52
1743 1906 8.524870 AGCGATTTATTAATGGATGCATTTTC 57.475 30.769 18.12 5.48 0.00 2.29
1759 1922 7.750458 CACAACACACAGATTTTAGCGATTTAT 59.250 33.333 0.00 0.00 0.00 1.40
2084 2250 2.555757 CAGGCCAAAAAGGAGAAGTCTG 59.444 50.000 5.01 0.00 41.22 3.51
2142 2338 8.311109 AGTTTTGTTTCACCATACAAGAGTTTT 58.689 29.630 0.00 0.00 35.83 2.43
2179 2375 9.026121 TCTGTATGTCTCCCTTAGCTATTATTC 57.974 37.037 0.00 0.00 0.00 1.75
2193 2389 4.399004 AGCATCAACTCTGTATGTCTCC 57.601 45.455 0.00 0.00 0.00 3.71
2354 2553 3.763360 CTCCAATCCAAGCACCATGTAAA 59.237 43.478 0.00 0.00 0.00 2.01
2358 2557 1.108776 CCTCCAATCCAAGCACCATG 58.891 55.000 0.00 0.00 0.00 3.66
2553 2892 4.238514 CAGCGACAAGTAGTAAGAGCTTT 58.761 43.478 0.00 0.00 0.00 3.51
2627 2981 2.825387 GCCGTGCCATGCTGATGA 60.825 61.111 0.00 0.00 0.00 2.92
2871 3225 1.083489 TTAAGCCTTGCGAATCACCG 58.917 50.000 0.00 0.00 0.00 4.94
2891 3245 6.825721 GGAAAGCTTATGAGAAGGATCAAGAA 59.174 38.462 0.00 0.00 31.76 2.52
3096 3450 3.758554 CGGAACTGACATTTCCTGGAAAT 59.241 43.478 25.30 25.30 42.14 2.17
3143 3497 9.601810 ACTGGATGGTTGAGTTGTATATATCTA 57.398 33.333 0.00 0.00 0.00 1.98
3190 3544 1.801178 CTCCTCCTCAACAACGAAAGC 59.199 52.381 0.00 0.00 0.00 3.51
3473 3842 9.468532 GAACAAGAATATATCTGGAATTTTGGC 57.531 33.333 0.00 0.00 38.79 4.52
3499 3907 5.063204 TCCATGAACACTAAAACTGACAGG 58.937 41.667 7.51 0.00 0.00 4.00
3507 3915 8.859090 AGAAATCACATTCCATGAACACTAAAA 58.141 29.630 0.00 0.00 0.00 1.52
3512 3921 6.017400 ACAGAAATCACATTCCATGAACAC 57.983 37.500 0.00 0.00 0.00 3.32
3648 4057 1.271379 TGAACAGGTGTAGCTACCGTG 59.729 52.381 21.01 21.95 45.56 4.94
3808 4220 8.829612 CAGAAAAGCTTTTTGTTTATGGTCAAT 58.170 29.630 24.58 0.00 0.00 2.57
4102 4551 2.838202 ACCATCAGTTCAACGGGTAGAT 59.162 45.455 0.00 0.00 0.00 1.98
4109 4558 7.094975 TGAAGGTTAAATACCATCAGTTCAACG 60.095 37.037 0.00 0.00 46.72 4.10
4223 4673 8.558973 TGATCAAAGAATCTTTCCTTCTCTTC 57.441 34.615 5.09 0.00 31.83 2.87
4675 5126 0.108207 ACAGATGCAGATAGGCCAGC 59.892 55.000 5.01 0.80 0.00 4.85
4741 5192 3.254060 CATGTAGTTGTCGTCCAAGAGG 58.746 50.000 0.00 0.00 32.51 3.69
4981 5432 0.532573 GCAGGAAGGATGACACGAGA 59.467 55.000 0.00 0.00 0.00 4.04
5005 5456 4.118410 CCTCGAGGTTCTCAATCTTCATG 58.882 47.826 24.04 0.00 0.00 3.07
5013 5464 0.537188 GATGCCCTCGAGGTTCTCAA 59.463 55.000 29.25 8.85 38.26 3.02
5259 5710 1.443828 GATCCTGAAGACGGAGGGC 59.556 63.158 0.00 0.00 33.29 5.19
5285 5736 0.465705 CCAGACATGTACGCCTCCAT 59.534 55.000 0.00 0.00 0.00 3.41
5286 5737 0.613572 TCCAGACATGTACGCCTCCA 60.614 55.000 0.00 0.00 0.00 3.86
5291 5742 2.135933 GCCTATTCCAGACATGTACGC 58.864 52.381 0.00 0.00 0.00 4.42
5348 12710 6.375945 AATTTGTCATTTTTGGTGAAAGGC 57.624 33.333 0.00 0.00 0.00 4.35
5353 12715 9.921637 GGTAGATTAATTTGTCATTTTTGGTGA 57.078 29.630 0.00 0.00 0.00 4.02
5361 12723 7.985184 TCTAGCACGGTAGATTAATTTGTCATT 59.015 33.333 1.89 0.00 0.00 2.57
5370 12732 5.887598 TGGTACTTCTAGCACGGTAGATTAA 59.112 40.000 6.79 0.00 0.00 1.40
5375 12737 3.442977 ACTTGGTACTTCTAGCACGGTAG 59.557 47.826 0.00 0.00 29.89 3.18
5382 12744 6.453926 ACTTAGCTACTTGGTACTTCTAGC 57.546 41.667 0.00 0.00 0.00 3.42
5422 12791 0.732571 AAACGCAGAACACACACAGG 59.267 50.000 0.00 0.00 0.00 4.00
5434 12803 1.970917 GCTCCACCGATGAAACGCAG 61.971 60.000 0.00 0.00 0.00 5.18
5464 12833 2.203195 TCACATGCCGCATAGCCC 60.203 61.111 5.31 0.00 0.00 5.19
5478 12847 2.135933 CACCCGAAACTGAGAACTCAC 58.864 52.381 0.00 0.00 35.46 3.51
5499 12869 2.544267 GACTGAGTTTTGTGTTCCCTCG 59.456 50.000 0.00 0.00 0.00 4.63
5502 12872 3.945285 TGAAGACTGAGTTTTGTGTTCCC 59.055 43.478 0.00 0.00 36.17 3.97
5514 12884 7.816513 TCTCATACTGAAAACATGAAGACTGAG 59.183 37.037 0.00 6.92 0.00 3.35
5520 12890 7.427606 GCGAATTCTCATACTGAAAACATGAAG 59.572 37.037 0.00 0.00 0.00 3.02
5549 12923 3.814504 AACTGAAATCTGGTGGTCCAT 57.185 42.857 0.00 0.00 43.43 3.41
5550 12924 3.221771 CAAACTGAAATCTGGTGGTCCA 58.778 45.455 0.00 0.00 42.05 4.02
5551 12925 2.029918 GCAAACTGAAATCTGGTGGTCC 60.030 50.000 0.00 0.00 0.00 4.46
5552 12926 2.622942 TGCAAACTGAAATCTGGTGGTC 59.377 45.455 0.00 0.00 0.00 4.02
5553 12927 2.665165 TGCAAACTGAAATCTGGTGGT 58.335 42.857 0.00 0.00 0.00 4.16
5554 12928 3.731652 TTGCAAACTGAAATCTGGTGG 57.268 42.857 0.00 0.00 0.00 4.61
5555 12929 4.624015 ACATTGCAAACTGAAATCTGGTG 58.376 39.130 1.71 0.00 0.00 4.17
5556 12930 4.942761 ACATTGCAAACTGAAATCTGGT 57.057 36.364 1.71 0.00 0.00 4.00
5557 12931 5.585500 CAACATTGCAAACTGAAATCTGG 57.415 39.130 1.71 0.00 0.00 3.86
5580 12954 4.445453 TCAGTTAGGCATGCATAGTTGAG 58.555 43.478 21.36 6.54 0.00 3.02
5582 12956 5.762825 ATTCAGTTAGGCATGCATAGTTG 57.237 39.130 21.36 17.49 0.00 3.16
5589 12963 4.559153 ACACAAAATTCAGTTAGGCATGC 58.441 39.130 9.90 9.90 0.00 4.06
5590 12964 5.634859 GGAACACAAAATTCAGTTAGGCATG 59.365 40.000 0.00 0.00 0.00 4.06
5595 12969 6.263168 AGGTCAGGAACACAAAATTCAGTTAG 59.737 38.462 0.00 0.00 0.00 2.34
5618 12997 6.918626 ACACGATTCAGAGTCATATCATAGG 58.081 40.000 0.00 0.00 0.00 2.57
5619 12998 7.588512 TGACACGATTCAGAGTCATATCATAG 58.411 38.462 0.00 0.00 36.94 2.23
5620 12999 7.510549 TGACACGATTCAGAGTCATATCATA 57.489 36.000 0.00 0.00 36.94 2.15
5622 13001 5.835113 TGACACGATTCAGAGTCATATCA 57.165 39.130 0.00 0.00 36.94 2.15
5626 13005 5.728471 AGATTTGACACGATTCAGAGTCAT 58.272 37.500 0.00 0.00 40.38 3.06
5632 13011 4.692625 ACCTTGAGATTTGACACGATTCAG 59.307 41.667 0.00 0.00 0.00 3.02
5647 13026 4.408921 TGACAGAAAGAAAGGACCTTGAGA 59.591 41.667 7.72 0.00 0.00 3.27
5653 13032 3.756117 ACCATGACAGAAAGAAAGGACC 58.244 45.455 0.00 0.00 0.00 4.46
5654 13033 5.998363 AGTTACCATGACAGAAAGAAAGGAC 59.002 40.000 0.00 0.00 0.00 3.85
5671 13052 7.721842 TCATAGGAACACAAAATTCAGTTACCA 59.278 33.333 0.00 0.00 0.00 3.25
5672 13053 8.106247 TCATAGGAACACAAAATTCAGTTACC 57.894 34.615 0.00 0.00 0.00 2.85
5677 14114 9.865321 ATTCATTCATAGGAACACAAAATTCAG 57.135 29.630 0.00 0.00 35.46 3.02
5684 14121 7.230309 TGACACAATTCATTCATAGGAACACAA 59.770 33.333 0.00 0.00 35.46 3.33
5695 14132 8.945481 ACTTGAAATTTGACACAATTCATTCA 57.055 26.923 0.00 0.00 30.81 2.57
5706 14143 9.541143 GGGAAGAAATAAACTTGAAATTTGACA 57.459 29.630 0.00 0.00 0.00 3.58
5707 14144 9.541143 TGGGAAGAAATAAACTTGAAATTTGAC 57.459 29.630 0.00 0.00 0.00 3.18
5731 14168 3.651450 GGTCACTCACCACCAATGTTGG 61.651 54.545 10.16 10.16 45.98 3.77
5747 14192 2.415512 GCTACATTTTCGACAGGGTCAC 59.584 50.000 0.00 0.00 32.09 3.67
5748 14193 2.037902 TGCTACATTTTCGACAGGGTCA 59.962 45.455 0.00 0.00 32.09 4.02
5749 14194 2.415512 GTGCTACATTTTCGACAGGGTC 59.584 50.000 0.00 0.00 0.00 4.46
5750 14195 2.224426 TGTGCTACATTTTCGACAGGGT 60.224 45.455 0.00 0.00 0.00 4.34
5751 14196 2.422597 TGTGCTACATTTTCGACAGGG 58.577 47.619 0.00 0.00 0.00 4.45
5752 14197 3.242091 CGATGTGCTACATTTTCGACAGG 60.242 47.826 3.76 0.00 39.27 4.00
5753 14198 3.782250 GCGATGTGCTACATTTTCGACAG 60.782 47.826 12.03 0.00 39.27 3.51
5754 14199 2.093625 GCGATGTGCTACATTTTCGACA 59.906 45.455 12.03 0.00 39.27 4.35
5781 14226 4.083217 TCGATAACAACACGAAAAATGGGG 60.083 41.667 0.00 0.00 33.20 4.96
5786 14231 4.271533 AGCTGTCGATAACAACACGAAAAA 59.728 37.500 0.00 0.00 37.45 1.94
5787 14232 3.805422 AGCTGTCGATAACAACACGAAAA 59.195 39.130 0.00 0.00 37.45 2.29
5788 14233 3.386486 AGCTGTCGATAACAACACGAAA 58.614 40.909 0.00 0.00 37.45 3.46
5838 14425 2.993899 GCGTCAGTTGTACAGTAGCATT 59.006 45.455 0.00 0.00 0.00 3.56
5849 14436 2.688507 AGAAATCGATGCGTCAGTTGT 58.311 42.857 6.75 0.00 0.00 3.32
5893 14480 2.100631 GTGGTCGTTGATCGCCCTG 61.101 63.158 0.00 0.00 38.49 4.45
5896 14483 0.949105 ACTTGTGGTCGTTGATCGCC 60.949 55.000 0.00 0.00 39.67 5.54
5924 14511 3.060070 GCTCTGATTGTTTGCTTGCAAAC 60.060 43.478 32.01 32.01 43.29 2.93
5925 14512 3.125316 GCTCTGATTGTTTGCTTGCAAA 58.875 40.909 15.66 15.66 0.00 3.68
5928 14515 2.288030 ACTGCTCTGATTGTTTGCTTGC 60.288 45.455 0.00 0.00 0.00 4.01
5929 14516 3.637998 ACTGCTCTGATTGTTTGCTTG 57.362 42.857 0.00 0.00 0.00 4.01
5931 14518 3.008375 TCCTACTGCTCTGATTGTTTGCT 59.992 43.478 0.00 0.00 0.00 3.91
5932 14519 3.338249 TCCTACTGCTCTGATTGTTTGC 58.662 45.455 0.00 0.00 0.00 3.68
5933 14520 6.344500 ACTATCCTACTGCTCTGATTGTTTG 58.656 40.000 0.00 0.00 0.00 2.93
5934 14521 6.552445 ACTATCCTACTGCTCTGATTGTTT 57.448 37.500 0.00 0.00 0.00 2.83
5935 14522 6.239176 GCTACTATCCTACTGCTCTGATTGTT 60.239 42.308 0.00 0.00 0.00 2.83
5936 14523 5.242838 GCTACTATCCTACTGCTCTGATTGT 59.757 44.000 0.00 0.00 0.00 2.71
5937 14524 5.476599 AGCTACTATCCTACTGCTCTGATTG 59.523 44.000 0.00 0.00 0.00 2.67
5938 14525 5.640147 AGCTACTATCCTACTGCTCTGATT 58.360 41.667 0.00 0.00 0.00 2.57
5939 14526 5.255397 AGCTACTATCCTACTGCTCTGAT 57.745 43.478 0.00 0.00 0.00 2.90
5940 14527 4.715534 AGCTACTATCCTACTGCTCTGA 57.284 45.455 0.00 0.00 0.00 3.27
5941 14528 6.001460 AGTTAGCTACTATCCTACTGCTCTG 58.999 44.000 0.00 0.00 34.56 3.35
5942 14529 6.195600 AGTTAGCTACTATCCTACTGCTCT 57.804 41.667 0.00 0.00 34.56 4.09
5961 14548 7.535738 TGGAGGGAGTATGAATGAGATAGTTA 58.464 38.462 0.00 0.00 0.00 2.24
5964 14551 6.496565 ACTTGGAGGGAGTATGAATGAGATAG 59.503 42.308 0.00 0.00 0.00 2.08
5968 14555 4.653341 AGACTTGGAGGGAGTATGAATGAG 59.347 45.833 0.00 0.00 0.00 2.90
5977 14564 1.353091 GTTGGAGACTTGGAGGGAGT 58.647 55.000 0.00 0.00 0.00 3.85
5987 14574 3.199289 CCTTATAAACCCGGTTGGAGACT 59.801 47.826 2.79 0.00 37.49 3.24
5988 14575 3.538591 CCTTATAAACCCGGTTGGAGAC 58.461 50.000 2.79 0.00 37.49 3.36
5989 14576 2.092807 GCCTTATAAACCCGGTTGGAGA 60.093 50.000 2.79 0.00 37.49 3.71
5990 14577 2.294979 GCCTTATAAACCCGGTTGGAG 58.705 52.381 2.79 0.07 37.49 3.86
5991 14578 1.407162 CGCCTTATAAACCCGGTTGGA 60.407 52.381 2.79 0.00 37.49 3.53
5992 14579 1.018910 CGCCTTATAAACCCGGTTGG 58.981 55.000 2.79 1.22 41.37 3.77
5993 14580 1.018910 CCGCCTTATAAACCCGGTTG 58.981 55.000 2.79 0.00 34.56 3.77
5994 14581 0.107066 CCCGCCTTATAAACCCGGTT 60.107 55.000 0.00 0.00 37.37 4.44
6010 14597 5.294356 TCAACCTAAAATACGATGATCCCG 58.706 41.667 0.00 3.46 0.00 5.14
6011 14598 6.766467 AGTTCAACCTAAAATACGATGATCCC 59.234 38.462 0.00 0.00 0.00 3.85
6012 14599 7.787725 AGTTCAACCTAAAATACGATGATCC 57.212 36.000 0.00 0.00 0.00 3.36
6013 14600 9.490663 CAAAGTTCAACCTAAAATACGATGATC 57.509 33.333 0.00 0.00 0.00 2.92
6017 14604 6.349860 GCCCAAAGTTCAACCTAAAATACGAT 60.350 38.462 0.00 0.00 0.00 3.73
6035 14622 2.961062 CCTAAAGGATCCATGCCCAAAG 59.039 50.000 15.82 0.00 37.39 2.77
6038 14625 0.852842 CCCTAAAGGATCCATGCCCA 59.147 55.000 15.82 0.00 38.24 5.36
6041 14667 0.108585 TCGCCCTAAAGGATCCATGC 59.891 55.000 15.82 5.86 38.24 4.06
6044 14670 1.120530 GACTCGCCCTAAAGGATCCA 58.879 55.000 15.82 0.00 38.24 3.41
6045 14671 1.120530 TGACTCGCCCTAAAGGATCC 58.879 55.000 2.48 2.48 38.24 3.36
6052 14678 5.020795 TGGCTATATATTGACTCGCCCTAA 58.979 41.667 1.64 0.00 35.28 2.69
6054 14680 3.441101 TGGCTATATATTGACTCGCCCT 58.559 45.455 1.64 0.00 35.28 5.19
6056 14682 3.118956 AGCTGGCTATATATTGACTCGCC 60.119 47.826 1.64 0.00 36.64 5.54
6060 14686 5.896678 CCTCCTAGCTGGCTATATATTGACT 59.103 44.000 0.00 0.00 35.26 3.41
6072 14698 1.836604 CCTCCTCCTCCTAGCTGGC 60.837 68.421 0.00 0.00 35.26 4.85
6073 14699 1.152355 CCCTCCTCCTCCTAGCTGG 60.152 68.421 0.00 0.00 37.10 4.85
6074 14700 1.152355 CCCCTCCTCCTCCTAGCTG 60.152 68.421 0.00 0.00 0.00 4.24
6075 14701 3.094751 GCCCCTCCTCCTCCTAGCT 62.095 68.421 0.00 0.00 0.00 3.32
6076 14702 2.525629 GCCCCTCCTCCTCCTAGC 60.526 72.222 0.00 0.00 0.00 3.42
6077 14703 1.458588 GTGCCCCTCCTCCTCCTAG 60.459 68.421 0.00 0.00 0.00 3.02
6078 14704 2.696893 GTGCCCCTCCTCCTCCTA 59.303 66.667 0.00 0.00 0.00 2.94
6079 14705 4.787280 CGTGCCCCTCCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
6104 14730 2.764128 GGGATGAGACCCGCTCCA 60.764 66.667 0.00 0.00 43.26 3.86
6117 14743 5.470368 CGTTTATGTACGATGAGATGGGAT 58.530 41.667 0.00 0.00 43.99 3.85
6118 14744 4.794981 GCGTTTATGTACGATGAGATGGGA 60.795 45.833 5.72 0.00 43.99 4.37
6119 14745 3.428870 GCGTTTATGTACGATGAGATGGG 59.571 47.826 5.72 0.00 43.99 4.00
6120 14746 3.428870 GGCGTTTATGTACGATGAGATGG 59.571 47.826 5.72 0.00 43.99 3.51
6140 15091 2.026449 AGCAAGCAGGGAGATATATGGC 60.026 50.000 0.00 0.00 0.00 4.40
6145 15096 1.423161 GGGAAGCAAGCAGGGAGATAT 59.577 52.381 0.00 0.00 0.00 1.63
6146 15097 0.839946 GGGAAGCAAGCAGGGAGATA 59.160 55.000 0.00 0.00 0.00 1.98
6147 15098 1.611965 GGGAAGCAAGCAGGGAGAT 59.388 57.895 0.00 0.00 0.00 2.75
6148 15099 2.606587 GGGGAAGCAAGCAGGGAGA 61.607 63.158 0.00 0.00 0.00 3.71
6189 15140 1.673665 GAGTGCCTCCTTGTGCCTG 60.674 63.158 0.00 0.00 0.00 4.85
6192 15143 3.426568 GCGAGTGCCTCCTTGTGC 61.427 66.667 0.00 0.00 33.98 4.57
6305 15256 6.836577 AGATTCCTCTTACTACGTACGTAC 57.163 41.667 23.60 15.90 0.00 3.67
6307 15258 5.982465 GAGATTCCTCTTACTACGTACGT 57.018 43.478 25.98 25.98 36.50 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.