Multiple sequence alignment - TraesCS7A01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G090900 chr7A 100.000 4366 0 0 1 4366 55361011 55365376 0.000000e+00 8063
1 TraesCS7A01G090900 chr7A 99.462 186 1 0 1 186 653011722 653011537 5.410000e-89 339
2 TraesCS7A01G090900 chr7D 91.114 1643 98 21 2755 4366 52837681 52836056 0.000000e+00 2182
3 TraesCS7A01G090900 chr7D 91.637 837 32 17 709 1525 52839701 52838883 0.000000e+00 1123
4 TraesCS7A01G090900 chr7D 91.392 546 25 12 189 720 52840386 52839849 0.000000e+00 728
5 TraesCS7A01G090900 chr7D 80.698 860 111 36 1562 2383 52838881 52838039 6.200000e-173 617
6 TraesCS7A01G090900 chr7D 98.246 114 2 0 2641 2754 52837864 52837751 2.660000e-47 200
7 TraesCS7A01G090900 chr7D 81.921 177 16 10 4200 4360 53410378 53410554 7.620000e-28 135
8 TraesCS7A01G090900 chr7D 84.058 138 6 2 2382 2503 52837997 52837860 7.670000e-23 119
9 TraesCS7A01G090900 chr4A 90.459 1635 104 18 2755 4366 667854566 667856171 0.000000e+00 2108
10 TraesCS7A01G090900 chr4A 91.174 1371 64 37 189 1522 667852105 667853455 0.000000e+00 1808
11 TraesCS7A01G090900 chr4A 85.000 440 46 13 1959 2383 667853775 667854209 3.120000e-116 429
12 TraesCS7A01G090900 chr4A 92.982 114 8 0 2641 2754 667854383 667854496 2.700000e-37 167
13 TraesCS7A01G090900 chr4A 95.890 73 2 1 2382 2454 667854251 667854322 2.760000e-22 117
14 TraesCS7A01G090900 chr5B 99.462 186 1 0 1 186 692520131 692520316 5.410000e-89 339
15 TraesCS7A01G090900 chr3B 98.925 186 2 0 1 186 447019853 447020038 2.520000e-87 333
16 TraesCS7A01G090900 chr3B 98.370 184 3 0 1 184 4306425 4306608 1.510000e-84 324
17 TraesCS7A01G090900 chr2B 98.930 187 1 1 1 186 677044746 677044932 2.520000e-87 333
18 TraesCS7A01G090900 chr2B 95.364 151 7 0 2493 2643 250888676 250888826 1.570000e-59 241
19 TraesCS7A01G090900 chr1B 99.457 184 0 1 1 184 131781116 131781298 2.520000e-87 333
20 TraesCS7A01G090900 chr5A 98.378 185 3 0 1 185 43538651 43538835 4.210000e-85 326
21 TraesCS7A01G090900 chr7B 98.895 181 2 0 3 183 477972701 477972521 1.510000e-84 324
22 TraesCS7A01G090900 chr7B 93.671 158 10 0 2491 2648 671719243 671719086 2.030000e-58 237
23 TraesCS7A01G090900 chr4D 95.082 183 9 0 1 183 95816793 95816611 5.520000e-74 289
24 TraesCS7A01G090900 chr6D 97.315 149 4 0 2495 2643 319698150 319698002 2.020000e-63 254
25 TraesCS7A01G090900 chr6D 83.249 197 27 3 3177 3367 9868364 9868560 4.490000e-40 176
26 TraesCS7A01G090900 chr6A 95.425 153 5 1 2492 2644 542327134 542327284 4.360000e-60 243
27 TraesCS7A01G090900 chr5D 96.552 145 5 0 2499 2643 452694450 452694306 1.570000e-59 241
28 TraesCS7A01G090900 chr1D 96.552 145 5 0 2499 2643 401359605 401359749 1.570000e-59 241
29 TraesCS7A01G090900 chr1D 96.552 145 5 0 2499 2643 401437060 401437204 1.570000e-59 241
30 TraesCS7A01G090900 chr3A 94.737 152 7 1 2499 2650 137690262 137690412 7.300000e-58 235
31 TraesCS7A01G090900 chr3A 94.194 155 8 1 2489 2643 333860924 333860771 7.300000e-58 235
32 TraesCS7A01G090900 chr3A 87.662 154 16 2 3177 3327 748197588 748197741 4.490000e-40 176
33 TraesCS7A01G090900 chr3A 87.662 154 16 2 3177 3327 748630642 748630795 4.490000e-40 176
34 TraesCS7A01G090900 chr3A 86.364 154 18 2 3177 3327 748720918 748721071 9.710000e-37 165
35 TraesCS7A01G090900 chr3A 85.714 154 19 2 3177 3327 748527946 748528099 4.520000e-35 159
36 TraesCS7A01G090900 chrUn 87.662 154 16 2 3177 3327 479644566 479644719 4.490000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G090900 chr7A 55361011 55365376 4365 False 8063.000000 8063 100.000000 1 4366 1 chr7A.!!$F1 4365
1 TraesCS7A01G090900 chr7D 52836056 52840386 4330 True 828.166667 2182 89.524167 189 4366 6 chr7D.!!$R1 4177
2 TraesCS7A01G090900 chr4A 667852105 667856171 4066 False 925.800000 2108 91.101000 189 4366 5 chr4A.!!$F1 4177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.179020 CGGTGGTGCCCATGTCATAT 60.179 55.0 0.00 0.00 35.28 1.78 F
110 111 0.241749 CGGTTTTAGCCCGGTTTTCC 59.758 55.0 0.00 0.00 41.78 3.13 F
1528 1751 0.096281 TTTGATCCGCGCGTGAATTC 59.904 50.0 29.95 19.11 0.00 2.17 F
1537 1760 0.857311 CGCGTGAATTCGGTGATTGC 60.857 55.0 0.00 0.00 0.00 3.56 F
2538 2890 0.041833 CTCTCCCCAAGAGGACTGGA 59.958 60.0 0.00 0.00 46.73 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1725 0.315869 CGCGCGGATCAAATAACCAC 60.316 55.0 24.84 0.00 0.00 4.16 R
1558 1781 0.451783 GCGGACACAACAATCCATCC 59.548 55.0 0.00 0.00 34.35 3.51 R
2538 2890 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.0 0.00 0.00 0.00 4.79 R
2614 2966 0.110373 GTTCGGTTGCGTGTGAATCC 60.110 55.0 0.00 0.00 0.00 3.01 R
3881 4323 0.250424 GCCTGCATTTTGGCCAAACT 60.250 50.0 30.43 22.51 43.11 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.436001 TCGGCGGATGTCTTTCTTC 57.564 52.632 7.21 0.00 0.00 2.87
19 20 0.895530 TCGGCGGATGTCTTTCTTCT 59.104 50.000 7.21 0.00 0.00 2.85
20 21 1.275291 TCGGCGGATGTCTTTCTTCTT 59.725 47.619 7.21 0.00 0.00 2.52
21 22 2.076863 CGGCGGATGTCTTTCTTCTTT 58.923 47.619 0.00 0.00 0.00 2.52
22 23 2.159653 CGGCGGATGTCTTTCTTCTTTG 60.160 50.000 0.00 0.00 0.00 2.77
23 24 2.814336 GGCGGATGTCTTTCTTCTTTGT 59.186 45.455 0.00 0.00 0.00 2.83
24 25 4.000988 GGCGGATGTCTTTCTTCTTTGTA 58.999 43.478 0.00 0.00 0.00 2.41
25 26 4.093556 GGCGGATGTCTTTCTTCTTTGTAG 59.906 45.833 0.00 0.00 0.00 2.74
26 27 4.436183 GCGGATGTCTTTCTTCTTTGTAGC 60.436 45.833 0.00 0.00 0.00 3.58
27 28 4.093556 CGGATGTCTTTCTTCTTTGTAGCC 59.906 45.833 0.00 0.00 0.00 3.93
28 29 4.396478 GGATGTCTTTCTTCTTTGTAGCCC 59.604 45.833 0.00 0.00 0.00 5.19
29 30 3.751518 TGTCTTTCTTCTTTGTAGCCCC 58.248 45.455 0.00 0.00 0.00 5.80
30 31 2.742589 GTCTTTCTTCTTTGTAGCCCCG 59.257 50.000 0.00 0.00 0.00 5.73
31 32 2.635915 TCTTTCTTCTTTGTAGCCCCGA 59.364 45.455 0.00 0.00 0.00 5.14
32 33 2.762535 TTCTTCTTTGTAGCCCCGAG 57.237 50.000 0.00 0.00 0.00 4.63
33 34 1.640917 TCTTCTTTGTAGCCCCGAGT 58.359 50.000 0.00 0.00 0.00 4.18
34 35 1.975680 TCTTCTTTGTAGCCCCGAGTT 59.024 47.619 0.00 0.00 0.00 3.01
35 36 2.370849 TCTTCTTTGTAGCCCCGAGTTT 59.629 45.455 0.00 0.00 0.00 2.66
36 37 2.467566 TCTTTGTAGCCCCGAGTTTC 57.532 50.000 0.00 0.00 0.00 2.78
37 38 1.975680 TCTTTGTAGCCCCGAGTTTCT 59.024 47.619 0.00 0.00 0.00 2.52
38 39 2.370849 TCTTTGTAGCCCCGAGTTTCTT 59.629 45.455 0.00 0.00 0.00 2.52
39 40 2.178912 TTGTAGCCCCGAGTTTCTTG 57.821 50.000 0.00 0.00 0.00 3.02
40 41 1.053424 TGTAGCCCCGAGTTTCTTGT 58.947 50.000 0.00 0.00 0.00 3.16
41 42 1.001633 TGTAGCCCCGAGTTTCTTGTC 59.998 52.381 0.00 0.00 0.00 3.18
42 43 0.245539 TAGCCCCGAGTTTCTTGTCG 59.754 55.000 0.00 0.00 35.91 4.35
47 48 1.860078 CGAGTTTCTTGTCGGTGGC 59.140 57.895 0.00 0.00 32.40 5.01
48 49 1.566018 CGAGTTTCTTGTCGGTGGCC 61.566 60.000 0.00 0.00 32.40 5.36
49 50 0.534203 GAGTTTCTTGTCGGTGGCCA 60.534 55.000 0.00 0.00 0.00 5.36
50 51 0.535102 AGTTTCTTGTCGGTGGCCAG 60.535 55.000 5.11 0.00 0.00 4.85
51 52 1.228124 TTTCTTGTCGGTGGCCAGG 60.228 57.895 5.11 0.12 0.00 4.45
52 53 1.990160 TTTCTTGTCGGTGGCCAGGT 61.990 55.000 5.11 0.00 0.00 4.00
53 54 1.990160 TTCTTGTCGGTGGCCAGGTT 61.990 55.000 5.11 0.00 0.00 3.50
54 55 2.203280 TTGTCGGTGGCCAGGTTG 60.203 61.111 5.11 0.00 0.00 3.77
55 56 3.783362 TTGTCGGTGGCCAGGTTGG 62.783 63.158 5.11 0.00 41.55 3.77
73 74 4.343323 CCGGTGGTGCCCATGTCA 62.343 66.667 0.00 0.00 35.28 3.58
74 75 2.045045 CGGTGGTGCCCATGTCAT 60.045 61.111 0.00 0.00 35.28 3.06
75 76 1.223211 CGGTGGTGCCCATGTCATA 59.777 57.895 0.00 0.00 35.28 2.15
76 77 0.179020 CGGTGGTGCCCATGTCATAT 60.179 55.000 0.00 0.00 35.28 1.78
77 78 1.321474 GGTGGTGCCCATGTCATATG 58.679 55.000 0.00 0.00 35.28 1.78
78 79 1.321474 GTGGTGCCCATGTCATATGG 58.679 55.000 2.13 0.00 35.28 2.74
87 88 4.906065 CCATGTCATATGGGTTGAGTTG 57.094 45.455 2.13 0.00 35.58 3.16
88 89 4.272489 CCATGTCATATGGGTTGAGTTGT 58.728 43.478 2.13 0.00 35.58 3.32
89 90 5.436175 CCATGTCATATGGGTTGAGTTGTA 58.564 41.667 2.13 0.00 35.58 2.41
90 91 6.064060 CCATGTCATATGGGTTGAGTTGTAT 58.936 40.000 2.13 0.00 35.58 2.29
91 92 6.205464 CCATGTCATATGGGTTGAGTTGTATC 59.795 42.308 2.13 0.00 35.58 2.24
92 93 5.356426 TGTCATATGGGTTGAGTTGTATCG 58.644 41.667 2.13 0.00 0.00 2.92
93 94 4.750098 GTCATATGGGTTGAGTTGTATCGG 59.250 45.833 2.13 0.00 0.00 4.18
94 95 4.407621 TCATATGGGTTGAGTTGTATCGGT 59.592 41.667 2.13 0.00 0.00 4.69
95 96 3.713826 ATGGGTTGAGTTGTATCGGTT 57.286 42.857 0.00 0.00 0.00 4.44
96 97 3.495434 TGGGTTGAGTTGTATCGGTTT 57.505 42.857 0.00 0.00 0.00 3.27
97 98 3.822940 TGGGTTGAGTTGTATCGGTTTT 58.177 40.909 0.00 0.00 0.00 2.43
98 99 4.970711 TGGGTTGAGTTGTATCGGTTTTA 58.029 39.130 0.00 0.00 0.00 1.52
99 100 4.998672 TGGGTTGAGTTGTATCGGTTTTAG 59.001 41.667 0.00 0.00 0.00 1.85
100 101 4.142752 GGGTTGAGTTGTATCGGTTTTAGC 60.143 45.833 0.00 0.00 0.00 3.09
101 102 4.142752 GGTTGAGTTGTATCGGTTTTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
102 103 3.602483 TGAGTTGTATCGGTTTTAGCCC 58.398 45.455 0.00 0.00 0.00 5.19
103 104 2.606272 GAGTTGTATCGGTTTTAGCCCG 59.394 50.000 0.00 0.00 46.83 6.13
104 105 1.667212 GTTGTATCGGTTTTAGCCCGG 59.333 52.381 0.00 0.00 45.51 5.73
105 106 0.903942 TGTATCGGTTTTAGCCCGGT 59.096 50.000 0.00 0.00 45.51 5.28
106 107 1.278699 TGTATCGGTTTTAGCCCGGTT 59.721 47.619 0.00 0.00 45.51 4.44
107 108 2.290197 TGTATCGGTTTTAGCCCGGTTT 60.290 45.455 0.00 0.00 45.51 3.27
108 109 1.913778 ATCGGTTTTAGCCCGGTTTT 58.086 45.000 0.00 0.00 45.51 2.43
109 110 1.237533 TCGGTTTTAGCCCGGTTTTC 58.762 50.000 0.00 0.00 45.51 2.29
110 111 0.241749 CGGTTTTAGCCCGGTTTTCC 59.758 55.000 0.00 0.00 41.78 3.13
129 130 2.931512 CGTCAATTAACGGGGCAATT 57.068 45.000 0.00 0.00 38.96 2.32
130 131 2.792749 CGTCAATTAACGGGGCAATTC 58.207 47.619 0.00 0.00 38.96 2.17
131 132 2.422127 CGTCAATTAACGGGGCAATTCT 59.578 45.455 0.00 0.00 38.96 2.40
132 133 3.486875 CGTCAATTAACGGGGCAATTCTC 60.487 47.826 0.00 0.00 38.96 2.87
133 134 3.694566 GTCAATTAACGGGGCAATTCTCT 59.305 43.478 0.00 0.00 0.00 3.10
134 135 4.157840 GTCAATTAACGGGGCAATTCTCTT 59.842 41.667 0.00 0.00 0.00 2.85
135 136 4.398044 TCAATTAACGGGGCAATTCTCTTC 59.602 41.667 0.00 0.00 0.00 2.87
136 137 3.713826 TTAACGGGGCAATTCTCTTCT 57.286 42.857 0.00 0.00 0.00 2.85
137 138 2.586648 AACGGGGCAATTCTCTTCTT 57.413 45.000 0.00 0.00 0.00 2.52
138 139 2.115343 ACGGGGCAATTCTCTTCTTC 57.885 50.000 0.00 0.00 0.00 2.87
139 140 1.630878 ACGGGGCAATTCTCTTCTTCT 59.369 47.619 0.00 0.00 0.00 2.85
140 141 2.040412 ACGGGGCAATTCTCTTCTTCTT 59.960 45.455 0.00 0.00 0.00 2.52
141 142 3.263425 ACGGGGCAATTCTCTTCTTCTTA 59.737 43.478 0.00 0.00 0.00 2.10
142 143 4.261801 CGGGGCAATTCTCTTCTTCTTAA 58.738 43.478 0.00 0.00 0.00 1.85
143 144 4.884164 CGGGGCAATTCTCTTCTTCTTAAT 59.116 41.667 0.00 0.00 0.00 1.40
144 145 5.008118 CGGGGCAATTCTCTTCTTCTTAATC 59.992 44.000 0.00 0.00 0.00 1.75
145 146 5.888161 GGGGCAATTCTCTTCTTCTTAATCA 59.112 40.000 0.00 0.00 0.00 2.57
146 147 6.378280 GGGGCAATTCTCTTCTTCTTAATCAA 59.622 38.462 0.00 0.00 0.00 2.57
147 148 7.069208 GGGGCAATTCTCTTCTTCTTAATCAAT 59.931 37.037 0.00 0.00 0.00 2.57
148 149 7.919621 GGGCAATTCTCTTCTTCTTAATCAATG 59.080 37.037 0.00 0.00 0.00 2.82
149 150 8.680903 GGCAATTCTCTTCTTCTTAATCAATGA 58.319 33.333 0.00 0.00 0.00 2.57
155 156 8.680903 TCTCTTCTTCTTAATCAATGAAATGGC 58.319 33.333 0.00 0.00 0.00 4.40
156 157 8.352137 TCTTCTTCTTAATCAATGAAATGGCA 57.648 30.769 0.00 0.00 0.00 4.92
157 158 8.805175 TCTTCTTCTTAATCAATGAAATGGCAA 58.195 29.630 0.00 0.00 0.00 4.52
158 159 8.991243 TTCTTCTTAATCAATGAAATGGCAAG 57.009 30.769 0.00 0.00 0.00 4.01
159 160 8.125978 TCTTCTTAATCAATGAAATGGCAAGT 57.874 30.769 0.00 0.00 0.00 3.16
160 161 8.246180 TCTTCTTAATCAATGAAATGGCAAGTC 58.754 33.333 0.00 0.00 0.00 3.01
161 162 7.707624 TCTTAATCAATGAAATGGCAAGTCT 57.292 32.000 0.00 0.00 0.00 3.24
162 163 8.125978 TCTTAATCAATGAAATGGCAAGTCTT 57.874 30.769 0.00 0.00 0.00 3.01
163 164 8.587608 TCTTAATCAATGAAATGGCAAGTCTTT 58.412 29.630 0.00 0.00 0.00 2.52
164 165 9.211485 CTTAATCAATGAAATGGCAAGTCTTTT 57.789 29.630 0.00 0.00 0.00 2.27
165 166 7.429636 AATCAATGAAATGGCAAGTCTTTTG 57.570 32.000 0.00 1.55 0.00 2.44
166 167 4.751098 TCAATGAAATGGCAAGTCTTTTGC 59.249 37.500 3.39 3.39 44.22 3.68
173 174 2.492019 GCAAGTCTTTTGCCTCGTTT 57.508 45.000 0.54 0.00 39.38 3.60
174 175 2.385315 GCAAGTCTTTTGCCTCGTTTC 58.615 47.619 0.54 0.00 39.38 2.78
175 176 2.223479 GCAAGTCTTTTGCCTCGTTTCA 60.223 45.455 0.54 0.00 39.38 2.69
176 177 3.733684 GCAAGTCTTTTGCCTCGTTTCAA 60.734 43.478 0.54 0.00 39.38 2.69
177 178 4.420168 CAAGTCTTTTGCCTCGTTTCAAA 58.580 39.130 0.00 0.00 0.00 2.69
178 179 4.712122 AGTCTTTTGCCTCGTTTCAAAA 57.288 36.364 9.63 9.63 39.13 2.44
179 180 5.066968 AGTCTTTTGCCTCGTTTCAAAAA 57.933 34.783 10.66 0.00 40.36 1.94
340 342 3.630312 GGGCGAATAATTCAAACCTAGCA 59.370 43.478 0.00 0.00 0.00 3.49
378 380 5.981915 CCTAGCGTTAGTATCTGGTTAAACC 59.018 44.000 5.53 0.00 39.22 3.27
386 389 8.853126 GTTAGTATCTGGTTAAACCCTTTTTGT 58.147 33.333 0.00 0.00 37.50 2.83
481 486 3.133901 GGTGGGTGATTTTGAAACAGGTT 59.866 43.478 0.00 0.00 0.00 3.50
497 502 7.939039 TGAAACAGGTTCAAGAGATGAGTAAAT 59.061 33.333 0.00 0.00 43.43 1.40
539 544 5.645929 ACGAACACCATATTTAAGCATGTGA 59.354 36.000 0.00 0.00 0.00 3.58
650 676 2.186076 GTCACCGAGACGCTCTATTTG 58.814 52.381 5.53 0.00 37.53 2.32
724 909 1.299089 GTGCAACCAAACACGCTCC 60.299 57.895 0.00 0.00 0.00 4.70
725 910 2.335011 GCAACCAAACACGCTCCC 59.665 61.111 0.00 0.00 0.00 4.30
727 912 1.890041 CAACCAAACACGCTCCCGA 60.890 57.895 0.00 0.00 38.29 5.14
806 996 4.891992 TCGAAATGGAAAGAGAGAGGTT 57.108 40.909 0.00 0.00 0.00 3.50
807 997 4.569943 TCGAAATGGAAAGAGAGAGGTTG 58.430 43.478 0.00 0.00 0.00 3.77
965 1163 3.700350 CCCTCCTCCCCACCCTCT 61.700 72.222 0.00 0.00 0.00 3.69
975 1173 4.227134 CACCCTCTCCATCGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
1409 1631 3.502123 TCTTGACCCTCGTTGGATTTT 57.498 42.857 0.00 0.00 38.35 1.82
1492 1715 2.029470 CAGCGCTTTCCCATTTTTGGTA 60.029 45.455 7.50 0.00 0.00 3.25
1500 1723 4.666412 TCCCATTTTTGGTACCATCTGA 57.334 40.909 17.17 0.00 0.00 3.27
1502 1725 4.955450 TCCCATTTTTGGTACCATCTGATG 59.045 41.667 17.17 16.18 0.00 3.07
1518 1741 3.876914 TCTGATGTGGTTATTTGATCCGC 59.123 43.478 0.00 0.00 0.00 5.54
1522 1745 0.741574 TGGTTATTTGATCCGCGCGT 60.742 50.000 29.95 11.62 0.00 6.01
1525 1748 1.061421 GTTATTTGATCCGCGCGTGAA 59.939 47.619 29.95 14.31 0.00 3.18
1526 1749 1.577468 TATTTGATCCGCGCGTGAAT 58.423 45.000 29.95 18.65 0.00 2.57
1527 1750 0.732571 ATTTGATCCGCGCGTGAATT 59.267 45.000 29.95 11.33 0.00 2.17
1528 1751 0.096281 TTTGATCCGCGCGTGAATTC 59.904 50.000 29.95 19.11 0.00 2.17
1529 1752 2.019708 TTGATCCGCGCGTGAATTCG 62.020 55.000 29.95 11.58 0.00 3.34
1530 1753 3.210419 GATCCGCGCGTGAATTCGG 62.210 63.158 29.95 17.79 42.96 4.30
1531 1754 4.728102 TCCGCGCGTGAATTCGGT 62.728 61.111 29.95 0.00 42.28 4.69
1532 1755 4.499023 CCGCGCGTGAATTCGGTG 62.499 66.667 29.95 4.86 37.33 4.94
1533 1756 3.474904 CGCGCGTGAATTCGGTGA 61.475 61.111 24.19 0.00 0.00 4.02
1537 1760 0.857311 CGCGTGAATTCGGTGATTGC 60.857 55.000 0.00 0.00 0.00 3.56
1544 1767 3.505293 TGAATTCGGTGATTGCATTGTCA 59.495 39.130 0.04 0.00 0.00 3.58
1550 1773 4.940654 TCGGTGATTGCATTGTCAAATAGA 59.059 37.500 0.00 0.00 0.00 1.98
1554 1777 6.019318 GGTGATTGCATTGTCAAATAGATTGC 60.019 38.462 0.00 0.57 38.98 3.56
1556 1779 7.277098 GTGATTGCATTGTCAAATAGATTGCTT 59.723 33.333 7.80 0.00 38.98 3.91
1557 1780 8.468399 TGATTGCATTGTCAAATAGATTGCTTA 58.532 29.630 7.80 0.00 38.98 3.09
1558 1781 8.867112 ATTGCATTGTCAAATAGATTGCTTAG 57.133 30.769 7.80 0.00 38.98 2.18
1559 1782 6.798482 TGCATTGTCAAATAGATTGCTTAGG 58.202 36.000 7.80 0.00 38.98 2.69
1560 1783 6.602803 TGCATTGTCAAATAGATTGCTTAGGA 59.397 34.615 7.80 0.00 38.98 2.94
1561 1784 7.286087 TGCATTGTCAAATAGATTGCTTAGGAT 59.714 33.333 7.80 0.00 38.98 3.24
1562 1785 7.594015 GCATTGTCAAATAGATTGCTTAGGATG 59.406 37.037 0.00 0.00 38.98 3.51
1563 1786 7.572523 TTGTCAAATAGATTGCTTAGGATGG 57.427 36.000 0.00 0.00 38.98 3.51
1564 1787 6.899089 TGTCAAATAGATTGCTTAGGATGGA 58.101 36.000 0.00 0.00 38.98 3.41
1565 1788 7.520798 TGTCAAATAGATTGCTTAGGATGGAT 58.479 34.615 0.00 0.00 38.98 3.41
1566 1789 8.000709 TGTCAAATAGATTGCTTAGGATGGATT 58.999 33.333 0.00 0.00 38.98 3.01
1567 1790 8.295288 GTCAAATAGATTGCTTAGGATGGATTG 58.705 37.037 0.00 0.00 38.98 2.67
1568 1791 8.000709 TCAAATAGATTGCTTAGGATGGATTGT 58.999 33.333 0.00 0.00 38.98 2.71
1569 1792 8.636213 CAAATAGATTGCTTAGGATGGATTGTT 58.364 33.333 0.00 0.00 31.00 2.83
1575 1798 3.378427 GCTTAGGATGGATTGTTGTGTCC 59.622 47.826 0.00 0.00 35.02 4.02
1587 1810 1.333619 GTTGTGTCCGCACTGAAATGT 59.666 47.619 0.00 0.00 45.44 2.71
1596 1819 3.188254 CCGCACTGAAATGTTGATGTGTA 59.812 43.478 0.00 0.00 0.00 2.90
1603 1826 6.205464 ACTGAAATGTTGATGTGTAGTCCTTG 59.795 38.462 0.00 0.00 0.00 3.61
1604 1827 6.061441 TGAAATGTTGATGTGTAGTCCTTGT 58.939 36.000 0.00 0.00 0.00 3.16
1605 1828 7.220740 TGAAATGTTGATGTGTAGTCCTTGTA 58.779 34.615 0.00 0.00 0.00 2.41
1611 1834 4.039852 TGATGTGTAGTCCTTGTACTTGCA 59.960 41.667 0.00 0.00 0.00 4.08
1635 1858 8.718102 CAGTTATTGCCTTAATGTACTACAGT 57.282 34.615 0.00 0.00 0.00 3.55
1636 1859 9.811995 CAGTTATTGCCTTAATGTACTACAGTA 57.188 33.333 0.00 0.00 0.00 2.74
1638 1861 9.813446 GTTATTGCCTTAATGTACTACAGTAGT 57.187 33.333 17.51 17.51 42.68 2.73
1715 1946 7.953752 ACTACTCTGCTCTAGTTGTAAGTTTT 58.046 34.615 0.00 0.00 32.37 2.43
1727 1964 6.741724 AGTTGTAAGTTTTGGGGGATATGAT 58.258 36.000 0.00 0.00 0.00 2.45
1728 1965 6.607198 AGTTGTAAGTTTTGGGGGATATGATG 59.393 38.462 0.00 0.00 0.00 3.07
1776 2017 7.416817 TGTGAAGAATTAACATTCATATGCGG 58.583 34.615 0.00 0.00 41.37 5.69
1786 2027 6.064846 ACATTCATATGCGGAATTGAGTTC 57.935 37.500 0.00 0.00 35.03 3.01
1788 2029 5.991328 TTCATATGCGGAATTGAGTTCTC 57.009 39.130 0.00 0.00 37.01 2.87
1789 2030 4.380531 TCATATGCGGAATTGAGTTCTCC 58.619 43.478 0.00 0.00 37.01 3.71
1790 2031 2.787473 ATGCGGAATTGAGTTCTCCA 57.213 45.000 0.00 0.00 37.01 3.86
1805 2048 4.515567 AGTTCTCCATTGGTTCTTTTCGTC 59.484 41.667 1.86 0.00 0.00 4.20
1809 2052 2.159627 CCATTGGTTCTTTTCGTCGAGG 59.840 50.000 0.00 0.00 0.00 4.63
1814 2057 3.508793 TGGTTCTTTTCGTCGAGGTAGAT 59.491 43.478 4.85 0.00 0.00 1.98
1818 2061 4.730657 TCTTTTCGTCGAGGTAGATGTTC 58.269 43.478 4.85 0.00 0.00 3.18
1824 2067 2.100197 TCGAGGTAGATGTTCCACAGG 58.900 52.381 0.00 0.00 0.00 4.00
1835 2078 1.737793 GTTCCACAGGATTGTAAGGCG 59.262 52.381 0.00 0.00 35.25 5.52
1836 2079 1.271856 TCCACAGGATTGTAAGGCGA 58.728 50.000 0.00 0.00 35.25 5.54
1837 2080 1.207089 TCCACAGGATTGTAAGGCGAG 59.793 52.381 0.00 0.00 35.25 5.03
1839 2082 2.158900 CCACAGGATTGTAAGGCGAGAT 60.159 50.000 0.00 0.00 35.25 2.75
1847 2094 7.173907 CAGGATTGTAAGGCGAGATGATTATTT 59.826 37.037 0.00 0.00 0.00 1.40
1853 2100 9.725019 TGTAAGGCGAGATGATTATTTTGATAT 57.275 29.630 0.00 0.00 0.00 1.63
1874 2121 8.144478 TGATATATTCAGTCCAGCTTAGACAAC 58.856 37.037 14.50 0.00 36.68 3.32
1930 2179 4.157656 TGTTGGTAAAATGAGGCTGTATGC 59.842 41.667 0.00 0.00 41.94 3.14
1957 2206 7.122501 TGCATCCAAATTTGTCTTCTTGCTATA 59.877 33.333 16.73 0.01 0.00 1.31
2044 2323 4.631131 TGTGATAATATCAGACCTTGGCG 58.369 43.478 2.74 0.00 40.53 5.69
2101 2384 7.144722 TGTCTTGTCCTTTTAGCATGTTATG 57.855 36.000 0.00 0.00 0.00 1.90
2105 2388 8.855110 TCTTGTCCTTTTAGCATGTTATGAAAA 58.145 29.630 0.00 0.00 0.00 2.29
2106 2389 9.643693 CTTGTCCTTTTAGCATGTTATGAAAAT 57.356 29.630 0.00 0.00 0.00 1.82
2153 2436 5.918576 GGTTAACTTTCTGAATTTCCAACCG 59.081 40.000 5.42 0.00 0.00 4.44
2156 2439 4.394729 ACTTTCTGAATTTCCAACCGCTA 58.605 39.130 0.00 0.00 0.00 4.26
2160 2443 5.155278 TCTGAATTTCCAACCGCTAGTTA 57.845 39.130 0.00 0.00 36.18 2.24
2167 2450 3.362706 TCCAACCGCTAGTTATGACTCT 58.637 45.455 0.00 0.00 36.18 3.24
2171 2454 2.355132 ACCGCTAGTTATGACTCTGACG 59.645 50.000 0.00 0.00 37.33 4.35
2177 2460 2.094494 AGTTATGACTCTGACGCACCTG 60.094 50.000 0.00 0.00 0.00 4.00
2187 2470 2.206750 TGACGCACCTGTTGAACTTAC 58.793 47.619 0.00 0.00 0.00 2.34
2189 2472 2.610374 GACGCACCTGTTGAACTTACAA 59.390 45.455 0.00 0.00 0.00 2.41
2195 2479 6.371389 GCACCTGTTGAACTTACAATACTTC 58.629 40.000 0.00 0.00 32.36 3.01
2219 2503 5.579511 CCAGGCATCTAGAATTTGCTTTTTG 59.420 40.000 14.73 9.22 36.62 2.44
2224 2508 7.201582 GGCATCTAGAATTTGCTTTTTGATTGG 60.202 37.037 14.73 0.00 36.62 3.16
2257 2541 8.463930 TCTATTCCTTTTATGCTTATTGGTGG 57.536 34.615 0.00 0.00 0.00 4.61
2264 2549 7.094848 CCTTTTATGCTTATTGGTGGGTTTTTG 60.095 37.037 0.00 0.00 0.00 2.44
2265 2550 4.972751 ATGCTTATTGGTGGGTTTTTGT 57.027 36.364 0.00 0.00 0.00 2.83
2266 2551 4.762289 TGCTTATTGGTGGGTTTTTGTT 57.238 36.364 0.00 0.00 0.00 2.83
2310 2603 7.544566 TGTTAAGACTTCGTTTCATGGAGATAC 59.455 37.037 0.00 0.00 0.00 2.24
2318 2611 6.841119 TCGTTTCATGGAGATACATTTTGTG 58.159 36.000 0.00 0.00 0.00 3.33
2321 2614 6.513806 TTCATGGAGATACATTTTGTGTGG 57.486 37.500 0.00 0.00 42.24 4.17
2328 2621 7.232330 TGGAGATACATTTTGTGTGGAAAATCA 59.768 33.333 0.00 0.00 42.24 2.57
2342 2635 8.558700 GTGTGGAAAATCATGCTTGTTTTATTT 58.441 29.630 8.55 1.45 0.00 1.40
2343 2636 8.557864 TGTGGAAAATCATGCTTGTTTTATTTG 58.442 29.630 8.55 0.00 0.00 2.32
2349 2642 5.782047 TCATGCTTGTTTTATTTGGTGAGG 58.218 37.500 0.00 0.00 0.00 3.86
2399 2735 6.572167 TGCTGTGATTTGTGAATTGACATA 57.428 33.333 0.00 0.00 0.00 2.29
2502 2854 8.740123 TCAAGAGTAGACTATTCTCAGTTAGG 57.260 38.462 7.87 0.00 32.75 2.69
2503 2855 7.283580 TCAAGAGTAGACTATTCTCAGTTAGGC 59.716 40.741 7.87 0.00 32.75 3.93
2504 2856 6.066032 AGAGTAGACTATTCTCAGTTAGGCC 58.934 44.000 0.00 0.00 32.75 5.19
2505 2857 6.020881 AGTAGACTATTCTCAGTTAGGCCT 57.979 41.667 11.78 11.78 32.75 5.19
2506 2858 6.436890 AGTAGACTATTCTCAGTTAGGCCTT 58.563 40.000 12.58 0.00 32.75 4.35
2507 2859 5.606348 AGACTATTCTCAGTTAGGCCTTG 57.394 43.478 12.58 2.75 0.00 3.61
2508 2860 5.026790 AGACTATTCTCAGTTAGGCCTTGT 58.973 41.667 12.58 0.00 0.00 3.16
2509 2861 5.485708 AGACTATTCTCAGTTAGGCCTTGTT 59.514 40.000 12.58 0.00 0.00 2.83
2510 2862 5.735766 ACTATTCTCAGTTAGGCCTTGTTC 58.264 41.667 12.58 0.00 0.00 3.18
2511 2863 2.743636 TCTCAGTTAGGCCTTGTTCG 57.256 50.000 12.58 0.00 0.00 3.95
2512 2864 1.275291 TCTCAGTTAGGCCTTGTTCGG 59.725 52.381 12.58 0.05 0.00 4.30
2513 2865 1.002087 CTCAGTTAGGCCTTGTTCGGT 59.998 52.381 12.58 0.00 0.00 4.69
2514 2866 1.418637 TCAGTTAGGCCTTGTTCGGTT 59.581 47.619 12.58 0.00 0.00 4.44
2515 2867 2.633967 TCAGTTAGGCCTTGTTCGGTTA 59.366 45.455 12.58 0.00 0.00 2.85
2516 2868 3.071312 TCAGTTAGGCCTTGTTCGGTTAA 59.929 43.478 12.58 0.00 0.00 2.01
2517 2869 4.007659 CAGTTAGGCCTTGTTCGGTTAAT 58.992 43.478 12.58 0.00 0.00 1.40
2518 2870 4.094442 CAGTTAGGCCTTGTTCGGTTAATC 59.906 45.833 12.58 0.00 0.00 1.75
2519 2871 2.124277 AGGCCTTGTTCGGTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
2520 2872 1.633945 AGGCCTTGTTCGGTTAATCCT 59.366 47.619 0.00 0.00 0.00 3.24
2521 2873 2.014857 GGCCTTGTTCGGTTAATCCTC 58.985 52.381 0.00 0.00 0.00 3.71
2522 2874 2.355818 GGCCTTGTTCGGTTAATCCTCT 60.356 50.000 0.00 0.00 0.00 3.69
2523 2875 2.937149 GCCTTGTTCGGTTAATCCTCTC 59.063 50.000 0.00 0.00 0.00 3.20
2524 2876 3.532542 CCTTGTTCGGTTAATCCTCTCC 58.467 50.000 0.00 0.00 0.00 3.71
2525 2877 3.532542 CTTGTTCGGTTAATCCTCTCCC 58.467 50.000 0.00 0.00 0.00 4.30
2526 2878 1.835531 TGTTCGGTTAATCCTCTCCCC 59.164 52.381 0.00 0.00 0.00 4.81
2527 2879 1.835531 GTTCGGTTAATCCTCTCCCCA 59.164 52.381 0.00 0.00 0.00 4.96
2528 2880 2.237893 GTTCGGTTAATCCTCTCCCCAA 59.762 50.000 0.00 0.00 0.00 4.12
2529 2881 2.116238 TCGGTTAATCCTCTCCCCAAG 58.884 52.381 0.00 0.00 0.00 3.61
2530 2882 2.116238 CGGTTAATCCTCTCCCCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
2537 2889 2.601664 CTCTCCCCAAGAGGACTGG 58.398 63.158 0.00 0.00 46.73 4.00
2538 2890 0.041833 CTCTCCCCAAGAGGACTGGA 59.958 60.000 0.00 0.00 46.73 3.86
2539 2891 0.041833 TCTCCCCAAGAGGACTGGAG 59.958 60.000 0.00 0.00 43.44 3.86
2540 2892 0.980231 CTCCCCAAGAGGACTGGAGG 60.980 65.000 0.00 0.00 37.28 4.30
2541 2893 1.997874 CCCCAAGAGGACTGGAGGG 60.998 68.421 0.00 0.00 38.24 4.30
2542 2894 1.997874 CCCAAGAGGACTGGAGGGG 60.998 68.421 0.00 0.00 38.24 4.79
2543 2895 1.081092 CCAAGAGGACTGGAGGGGA 59.919 63.158 0.00 0.00 36.89 4.81
2544 2896 0.327000 CCAAGAGGACTGGAGGGGAT 60.327 60.000 0.00 0.00 36.89 3.85
2545 2897 1.589414 CAAGAGGACTGGAGGGGATT 58.411 55.000 0.00 0.00 0.00 3.01
2546 2898 1.211457 CAAGAGGACTGGAGGGGATTG 59.789 57.143 0.00 0.00 0.00 2.67
2547 2899 0.327000 AGAGGACTGGAGGGGATTGG 60.327 60.000 0.00 0.00 0.00 3.16
2548 2900 1.988982 GAGGACTGGAGGGGATTGGC 61.989 65.000 0.00 0.00 0.00 4.52
2549 2901 2.308722 GGACTGGAGGGGATTGGCA 61.309 63.158 0.00 0.00 0.00 4.92
2550 2902 1.691219 GACTGGAGGGGATTGGCAA 59.309 57.895 0.68 0.68 0.00 4.52
2551 2903 0.394899 GACTGGAGGGGATTGGCAAG 60.395 60.000 5.96 0.00 0.00 4.01
2552 2904 1.076485 CTGGAGGGGATTGGCAAGG 60.076 63.158 5.96 0.00 0.00 3.61
2553 2905 1.543642 TGGAGGGGATTGGCAAGGA 60.544 57.895 5.96 0.00 0.00 3.36
2554 2906 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
2555 2907 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
2571 2923 6.254281 CAAGGATTGGTTCGTATTTTGACT 57.746 37.500 0.00 0.00 43.94 3.41
2572 2924 6.677913 CAAGGATTGGTTCGTATTTTGACTT 58.322 36.000 0.00 0.00 43.94 3.01
2573 2925 7.812648 CAAGGATTGGTTCGTATTTTGACTTA 58.187 34.615 0.00 0.00 43.94 2.24
2574 2926 8.458843 CAAGGATTGGTTCGTATTTTGACTTAT 58.541 33.333 0.00 0.00 43.94 1.73
2575 2927 9.675464 AAGGATTGGTTCGTATTTTGACTTATA 57.325 29.630 0.00 0.00 0.00 0.98
2576 2928 9.675464 AGGATTGGTTCGTATTTTGACTTATAA 57.325 29.630 0.00 0.00 0.00 0.98
2577 2929 9.931210 GGATTGGTTCGTATTTTGACTTATAAG 57.069 33.333 11.05 11.05 0.00 1.73
2580 2932 8.712285 TGGTTCGTATTTTGACTTATAAGAGG 57.288 34.615 19.38 1.01 0.00 3.69
2581 2933 8.316214 TGGTTCGTATTTTGACTTATAAGAGGT 58.684 33.333 19.38 0.00 0.00 3.85
2582 2934 9.159364 GGTTCGTATTTTGACTTATAAGAGGTT 57.841 33.333 19.38 0.00 0.00 3.50
2591 2943 9.470399 TTTGACTTATAAGAGGTTTAAATCCCC 57.530 33.333 19.38 0.00 0.00 4.81
2592 2944 7.580007 TGACTTATAAGAGGTTTAAATCCCCC 58.420 38.462 19.38 0.00 0.00 5.40
2593 2945 7.407918 TGACTTATAAGAGGTTTAAATCCCCCT 59.592 37.037 19.38 0.00 0.00 4.79
2594 2946 7.813331 ACTTATAAGAGGTTTAAATCCCCCTC 58.187 38.462 19.38 12.53 43.14 4.30
2595 2947 7.407918 ACTTATAAGAGGTTTAAATCCCCCTCA 59.592 37.037 19.38 5.60 44.85 3.86
2596 2948 6.668133 ATAAGAGGTTTAAATCCCCCTCAA 57.332 37.500 19.38 10.74 44.85 3.02
2597 2949 5.348259 AAGAGGTTTAAATCCCCCTCAAA 57.652 39.130 19.38 0.00 44.85 2.69
2598 2950 4.673968 AGAGGTTTAAATCCCCCTCAAAC 58.326 43.478 19.38 0.00 44.85 2.93
2599 2951 3.767673 GAGGTTTAAATCCCCCTCAAACC 59.232 47.826 14.63 6.45 45.48 3.27
2600 2952 2.835764 GGTTTAAATCCCCCTCAAACCC 59.164 50.000 3.66 0.00 41.38 4.11
2601 2953 2.835764 GTTTAAATCCCCCTCAAACCCC 59.164 50.000 0.00 0.00 0.00 4.95
2602 2954 2.084121 TAAATCCCCCTCAAACCCCT 57.916 50.000 0.00 0.00 0.00 4.79
2603 2955 1.176182 AAATCCCCCTCAAACCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
2604 2956 0.710588 AATCCCCCTCAAACCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
2605 2957 0.479589 ATCCCCCTCAAACCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
2606 2958 0.703056 TCCCCCTCAAACCCCTTCAA 60.703 55.000 0.00 0.00 0.00 2.69
2607 2959 0.413434 CCCCCTCAAACCCCTTCAAT 59.587 55.000 0.00 0.00 0.00 2.57
2608 2960 1.619704 CCCCCTCAAACCCCTTCAATC 60.620 57.143 0.00 0.00 0.00 2.67
2609 2961 1.619704 CCCCTCAAACCCCTTCAATCC 60.620 57.143 0.00 0.00 0.00 3.01
2610 2962 1.077005 CCCTCAAACCCCTTCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
2611 2963 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
2612 2964 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
2613 2965 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
2614 2966 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
2615 2967 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
2625 2977 1.080093 TCCACTCGGATTCACACGC 60.080 57.895 0.00 0.00 35.91 5.34
2626 2978 1.374125 CCACTCGGATTCACACGCA 60.374 57.895 0.00 0.00 0.00 5.24
2627 2979 0.948623 CCACTCGGATTCACACGCAA 60.949 55.000 0.00 0.00 0.00 4.85
2628 2980 0.163788 CACTCGGATTCACACGCAAC 59.836 55.000 0.00 0.00 0.00 4.17
2629 2981 0.949105 ACTCGGATTCACACGCAACC 60.949 55.000 0.00 0.00 0.00 3.77
2630 2982 1.955529 CTCGGATTCACACGCAACCG 61.956 60.000 0.00 0.00 41.39 4.44
2631 2983 2.024868 CGGATTCACACGCAACCGA 61.025 57.895 0.00 0.00 42.40 4.69
2632 2984 1.561717 CGGATTCACACGCAACCGAA 61.562 55.000 0.00 0.00 42.40 4.30
2633 2985 0.110373 GGATTCACACGCAACCGAAC 60.110 55.000 0.00 0.00 38.29 3.95
2634 2986 0.584396 GATTCACACGCAACCGAACA 59.416 50.000 0.00 0.00 38.29 3.18
2635 2987 1.003331 GATTCACACGCAACCGAACAA 60.003 47.619 0.00 0.00 38.29 2.83
2636 2988 0.375454 TTCACACGCAACCGAACAAG 59.625 50.000 0.00 0.00 38.29 3.16
2637 2989 1.010125 CACACGCAACCGAACAAGG 60.010 57.895 0.00 0.00 38.29 3.61
2638 2990 2.051345 CACGCAACCGAACAAGGC 60.051 61.111 0.00 0.00 38.29 4.35
2639 2991 3.284449 ACGCAACCGAACAAGGCC 61.284 61.111 0.00 0.00 38.29 5.19
2653 3005 2.025887 ACAAGGCCTTAGGATGGTGAAG 60.026 50.000 20.00 3.39 0.00 3.02
2744 3096 5.221126 GCCTGGCCTATTTTCTCATAACTTG 60.221 44.000 7.66 0.00 0.00 3.16
2771 3192 4.572985 TTGAGACAAATCACTTTGCAGG 57.427 40.909 0.00 0.00 44.63 4.85
2798 3219 4.425180 TTGTTGGCTCAACTGTACCTTA 57.575 40.909 15.91 0.00 43.85 2.69
2800 3221 3.134985 TGTTGGCTCAACTGTACCTTACA 59.865 43.478 15.91 0.00 43.85 2.41
2935 3356 1.293179 GATTGTTGGTTGCCCTGGC 59.707 57.895 0.00 0.00 42.35 4.85
2954 3375 3.322828 TGGCGGTGAAGGAGGTATATTAC 59.677 47.826 0.00 0.00 0.00 1.89
2983 3404 4.295141 ACATAATTCCGTCTCCACCAAA 57.705 40.909 0.00 0.00 0.00 3.28
2984 3405 4.261801 ACATAATTCCGTCTCCACCAAAG 58.738 43.478 0.00 0.00 0.00 2.77
2997 3418 0.251341 ACCAAAGGAGGCTGCGAAAT 60.251 50.000 0.00 0.00 0.00 2.17
3042 3463 8.908786 TTATCTAGAAATGATCATCAACCCAC 57.091 34.615 9.06 0.00 0.00 4.61
3228 3649 5.637387 TGCTTTTCCTTGTGTGAACTTTTTC 59.363 36.000 0.00 0.00 0.00 2.29
3266 3687 5.779529 ATCATGTATTGCCTCCATGTTTC 57.220 39.130 0.00 0.00 37.73 2.78
3267 3688 4.858850 TCATGTATTGCCTCCATGTTTCT 58.141 39.130 0.00 0.00 37.73 2.52
3268 3689 4.641541 TCATGTATTGCCTCCATGTTTCTG 59.358 41.667 0.00 0.00 37.73 3.02
3269 3690 4.299586 TGTATTGCCTCCATGTTTCTGA 57.700 40.909 0.00 0.00 0.00 3.27
3270 3691 4.264253 TGTATTGCCTCCATGTTTCTGAG 58.736 43.478 0.00 0.00 0.00 3.35
3271 3692 1.538047 TTGCCTCCATGTTTCTGAGC 58.462 50.000 0.00 0.00 0.00 4.26
3272 3693 0.694771 TGCCTCCATGTTTCTGAGCT 59.305 50.000 0.00 0.00 0.00 4.09
3273 3694 1.074405 TGCCTCCATGTTTCTGAGCTT 59.926 47.619 0.00 0.00 0.00 3.74
3275 3696 2.094854 GCCTCCATGTTTCTGAGCTTTG 60.095 50.000 0.00 0.00 0.00 2.77
3279 3700 3.569701 TCCATGTTTCTGAGCTTTGGAAC 59.430 43.478 0.00 0.00 0.00 3.62
3292 3716 8.691661 TGAGCTTTGGAACTAACTTTATTTCT 57.308 30.769 0.00 0.00 0.00 2.52
3341 3765 1.500474 ACCCTGACGGACATGATGAT 58.500 50.000 0.00 0.00 34.64 2.45
3347 3774 2.362077 TGACGGACATGATGATGACGAT 59.638 45.455 16.97 5.42 37.13 3.73
3377 3804 5.046529 CACCACCATTAAGATCGAAGAGAG 58.953 45.833 0.00 0.00 43.63 3.20
3412 3839 4.619227 AACAGTGGACCGGTGCCG 62.619 66.667 24.47 14.26 39.44 5.69
3533 3960 4.074259 CAGTTGTCATGACTGGGAAATCA 58.926 43.478 25.55 0.00 40.58 2.57
3542 3969 1.339824 ACTGGGAAATCAGAGCAGCAG 60.340 52.381 0.00 0.00 38.11 4.24
3625 4054 7.995289 TGTGATTCATTAAACAAACAGTGACT 58.005 30.769 0.00 0.00 0.00 3.41
3643 4072 3.818773 TGACTTCCCTTTCATTTTCGACC 59.181 43.478 0.00 0.00 0.00 4.79
3747 4176 1.822371 GGTGGGCAATTTGTTATCCGT 59.178 47.619 0.00 0.00 0.00 4.69
3772 4201 2.154963 TCGTTTTCGCTTTGACGATCTG 59.845 45.455 0.00 0.00 42.54 2.90
3778 4207 1.471501 CGCTTTGACGATCTGGATCCA 60.472 52.381 15.27 15.27 34.40 3.41
3788 4217 3.313526 CGATCTGGATCCATTGTTTGTCC 59.686 47.826 16.63 0.00 34.40 4.02
3790 4219 4.387026 TCTGGATCCATTGTTTGTCCTT 57.613 40.909 16.63 0.00 0.00 3.36
3791 4220 4.335416 TCTGGATCCATTGTTTGTCCTTC 58.665 43.478 16.63 0.00 0.00 3.46
3835 4273 4.067896 GAGGAAACTGTCAATCAAGCTCA 58.932 43.478 0.00 0.00 44.43 4.26
3836 4274 4.660168 AGGAAACTGTCAATCAAGCTCAT 58.340 39.130 0.00 0.00 41.13 2.90
3873 4315 1.615392 AGTTGTTGGCTGAAGCATTCC 59.385 47.619 4.43 0.00 46.93 3.01
3880 4322 1.203287 GGCTGAAGCATTCCAACCTTC 59.797 52.381 4.43 0.00 46.93 3.46
3881 4323 1.888512 GCTGAAGCATTCCAACCTTCA 59.111 47.619 0.00 0.00 46.93 3.02
3887 4329 2.629617 AGCATTCCAACCTTCAGTTTGG 59.370 45.455 0.00 0.00 36.18 3.28
3893 4335 2.093235 CCAACCTTCAGTTTGGCCAAAA 60.093 45.455 31.92 14.82 36.18 2.44
3921 4363 1.877637 TCACCAACCACGAATGACAG 58.122 50.000 0.00 0.00 0.00 3.51
3998 4441 7.576750 TGCTCATCTACTTAACAACTTAACG 57.423 36.000 0.00 0.00 0.00 3.18
4000 4443 7.327761 TGCTCATCTACTTAACAACTTAACGAC 59.672 37.037 0.00 0.00 0.00 4.34
4007 4450 6.712549 ACTTAACAACTTAACGACTGAAAGC 58.287 36.000 0.00 0.00 37.60 3.51
4009 4452 3.192466 ACAACTTAACGACTGAAAGCGT 58.808 40.909 0.00 0.00 45.69 5.07
4147 4602 3.748645 AGAGAGACCAGAGGAAAGCTA 57.251 47.619 0.00 0.00 0.00 3.32
4152 4607 5.555966 AGAGACCAGAGGAAAGCTAAAAAG 58.444 41.667 0.00 0.00 0.00 2.27
4175 4637 7.962964 AGATTTCAAGTTGAGAATGTCGTTA 57.037 32.000 5.56 0.00 0.00 3.18
4179 4641 4.326278 TCAAGTTGAGAATGTCGTTATCGC 59.674 41.667 0.08 0.00 36.96 4.58
4186 4648 6.327154 TGAGAATGTCGTTATCGCTCTTTAA 58.673 36.000 0.00 0.00 36.96 1.52
4192 4654 8.867112 ATGTCGTTATCGCTCTTTAAGATTTA 57.133 30.769 0.00 0.00 36.96 1.40
4193 4655 8.336498 TGTCGTTATCGCTCTTTAAGATTTAG 57.664 34.615 0.00 0.00 36.96 1.85
4199 4663 5.529791 TCGCTCTTTAAGATTTAGGGATCG 58.470 41.667 0.00 0.00 0.00 3.69
4207 4671 9.109393 CTTTAAGATTTAGGGATCGACATTCAA 57.891 33.333 0.00 0.00 0.00 2.69
4227 4691 5.690865 TCAACAAGTCAAAACTGGGAGTAT 58.309 37.500 0.00 0.00 35.36 2.12
4231 4695 4.974645 AGTCAAAACTGGGAGTATGACA 57.025 40.909 17.80 0.00 42.67 3.58
4233 4697 5.063880 AGTCAAAACTGGGAGTATGACAAC 58.936 41.667 17.80 1.29 42.67 3.32
4236 4700 2.743636 ACTGGGAGTATGACAACGTG 57.256 50.000 0.00 0.00 0.00 4.49
4246 4710 0.318699 TGACAACGTGAAGGAGCTCG 60.319 55.000 7.83 0.00 0.00 5.03
4249 4713 1.009389 CAACGTGAAGGAGCTCGGAC 61.009 60.000 7.83 1.71 0.00 4.79
4257 4721 2.415608 GGAGCTCGGACGATGGTCA 61.416 63.158 7.83 0.00 45.28 4.02
4260 4724 2.808315 CTCGGACGATGGTCAGGG 59.192 66.667 10.22 1.52 45.28 4.45
4262 4726 1.076265 TCGGACGATGGTCAGGGAT 60.076 57.895 10.22 0.00 45.28 3.85
4265 4729 0.390860 GGACGATGGTCAGGGATCAG 59.609 60.000 10.22 0.00 45.28 2.90
4266 4730 0.390860 GACGATGGTCAGGGATCAGG 59.609 60.000 2.59 0.00 42.91 3.86
4267 4731 1.070445 CGATGGTCAGGGATCAGGC 59.930 63.158 0.00 0.00 0.00 4.85
4268 4732 1.070445 GATGGTCAGGGATCAGGCG 59.930 63.158 0.00 0.00 0.00 5.52
4284 4748 2.107141 CGGGATGGCGAGGAGAAC 59.893 66.667 0.00 0.00 0.00 3.01
4294 4758 1.376037 GAGGAGAACGGCCAAGGTG 60.376 63.158 2.24 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.895530 AGAAGAAAGACATCCGCCGA 59.104 50.000 0.00 0.00 0.00 5.54
1 2 1.726853 AAGAAGAAAGACATCCGCCG 58.273 50.000 0.00 0.00 0.00 6.46
2 3 2.814336 ACAAAGAAGAAAGACATCCGCC 59.186 45.455 0.00 0.00 0.00 6.13
3 4 4.436183 GCTACAAAGAAGAAAGACATCCGC 60.436 45.833 0.00 0.00 0.00 5.54
4 5 4.093556 GGCTACAAAGAAGAAAGACATCCG 59.906 45.833 0.00 0.00 0.00 4.18
5 6 4.396478 GGGCTACAAAGAAGAAAGACATCC 59.604 45.833 0.00 0.00 0.00 3.51
6 7 4.396478 GGGGCTACAAAGAAGAAAGACATC 59.604 45.833 0.00 0.00 0.00 3.06
7 8 4.336280 GGGGCTACAAAGAAGAAAGACAT 58.664 43.478 0.00 0.00 0.00 3.06
8 9 3.751518 GGGGCTACAAAGAAGAAAGACA 58.248 45.455 0.00 0.00 0.00 3.41
9 10 2.742589 CGGGGCTACAAAGAAGAAAGAC 59.257 50.000 0.00 0.00 0.00 3.01
10 11 2.635915 TCGGGGCTACAAAGAAGAAAGA 59.364 45.455 0.00 0.00 0.00 2.52
11 12 3.003480 CTCGGGGCTACAAAGAAGAAAG 58.997 50.000 0.00 0.00 0.00 2.62
12 13 2.370849 ACTCGGGGCTACAAAGAAGAAA 59.629 45.455 0.00 0.00 0.00 2.52
13 14 1.975680 ACTCGGGGCTACAAAGAAGAA 59.024 47.619 0.00 0.00 0.00 2.52
14 15 1.640917 ACTCGGGGCTACAAAGAAGA 58.359 50.000 0.00 0.00 0.00 2.87
15 16 2.474410 AACTCGGGGCTACAAAGAAG 57.526 50.000 0.00 0.00 0.00 2.85
16 17 2.370849 AGAAACTCGGGGCTACAAAGAA 59.629 45.455 0.00 0.00 0.00 2.52
17 18 1.975680 AGAAACTCGGGGCTACAAAGA 59.024 47.619 0.00 0.00 0.00 2.52
18 19 2.474410 AGAAACTCGGGGCTACAAAG 57.526 50.000 0.00 0.00 0.00 2.77
19 20 2.158726 ACAAGAAACTCGGGGCTACAAA 60.159 45.455 0.00 0.00 0.00 2.83
20 21 1.418637 ACAAGAAACTCGGGGCTACAA 59.581 47.619 0.00 0.00 0.00 2.41
21 22 1.001633 GACAAGAAACTCGGGGCTACA 59.998 52.381 0.00 0.00 0.00 2.74
22 23 1.723220 GACAAGAAACTCGGGGCTAC 58.277 55.000 0.00 0.00 0.00 3.58
23 24 0.245539 CGACAAGAAACTCGGGGCTA 59.754 55.000 0.00 0.00 0.00 3.93
24 25 1.004918 CGACAAGAAACTCGGGGCT 60.005 57.895 0.00 0.00 0.00 5.19
25 26 2.033194 CCGACAAGAAACTCGGGGC 61.033 63.158 0.00 0.00 44.84 5.80
26 27 4.278956 CCGACAAGAAACTCGGGG 57.721 61.111 0.00 0.00 44.84 5.73
29 30 1.566018 GGCCACCGACAAGAAACTCG 61.566 60.000 0.00 0.00 0.00 4.18
30 31 0.534203 TGGCCACCGACAAGAAACTC 60.534 55.000 0.00 0.00 0.00 3.01
31 32 0.535102 CTGGCCACCGACAAGAAACT 60.535 55.000 0.00 0.00 0.00 2.66
32 33 1.515521 CCTGGCCACCGACAAGAAAC 61.516 60.000 0.00 0.00 0.00 2.78
33 34 1.228124 CCTGGCCACCGACAAGAAA 60.228 57.895 0.00 0.00 0.00 2.52
34 35 1.990160 AACCTGGCCACCGACAAGAA 61.990 55.000 0.00 0.00 0.00 2.52
35 36 2.448582 AACCTGGCCACCGACAAGA 61.449 57.895 0.00 0.00 0.00 3.02
36 37 2.113139 AACCTGGCCACCGACAAG 59.887 61.111 0.00 0.00 0.00 3.16
37 38 2.203280 CAACCTGGCCACCGACAA 60.203 61.111 0.00 0.00 0.00 3.18
38 39 4.263572 CCAACCTGGCCACCGACA 62.264 66.667 0.00 0.00 0.00 4.35
66 67 4.272489 ACAACTCAACCCATATGACATGG 58.728 43.478 3.65 0.00 38.88 3.66
67 68 6.073602 CGATACAACTCAACCCATATGACATG 60.074 42.308 3.65 0.00 0.00 3.21
68 69 5.991606 CGATACAACTCAACCCATATGACAT 59.008 40.000 3.65 0.00 0.00 3.06
69 70 5.356426 CGATACAACTCAACCCATATGACA 58.644 41.667 3.65 0.00 0.00 3.58
70 71 4.750098 CCGATACAACTCAACCCATATGAC 59.250 45.833 3.65 0.00 0.00 3.06
71 72 4.407621 ACCGATACAACTCAACCCATATGA 59.592 41.667 3.65 0.00 0.00 2.15
72 73 4.703897 ACCGATACAACTCAACCCATATG 58.296 43.478 0.00 0.00 0.00 1.78
73 74 5.367945 AACCGATACAACTCAACCCATAT 57.632 39.130 0.00 0.00 0.00 1.78
74 75 4.829872 AACCGATACAACTCAACCCATA 57.170 40.909 0.00 0.00 0.00 2.74
75 76 3.713826 AACCGATACAACTCAACCCAT 57.286 42.857 0.00 0.00 0.00 4.00
76 77 3.495434 AAACCGATACAACTCAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
77 78 4.142752 GCTAAAACCGATACAACTCAACCC 60.143 45.833 0.00 0.00 0.00 4.11
78 79 4.142752 GGCTAAAACCGATACAACTCAACC 60.143 45.833 0.00 0.00 0.00 3.77
79 80 4.142752 GGGCTAAAACCGATACAACTCAAC 60.143 45.833 0.00 0.00 0.00 3.18
80 81 4.004982 GGGCTAAAACCGATACAACTCAA 58.995 43.478 0.00 0.00 0.00 3.02
81 82 3.602483 GGGCTAAAACCGATACAACTCA 58.398 45.455 0.00 0.00 0.00 3.41
92 93 0.241749 CGGAAAACCGGGCTAAAACC 59.758 55.000 6.32 0.00 0.00 3.27
93 94 0.953727 ACGGAAAACCGGGCTAAAAC 59.046 50.000 6.32 0.00 37.53 2.43
94 95 1.237533 GACGGAAAACCGGGCTAAAA 58.762 50.000 6.32 0.00 37.53 1.52
95 96 0.108207 TGACGGAAAACCGGGCTAAA 59.892 50.000 6.32 0.00 37.53 1.85
96 97 0.108207 TTGACGGAAAACCGGGCTAA 59.892 50.000 6.32 0.54 37.53 3.09
97 98 0.325602 ATTGACGGAAAACCGGGCTA 59.674 50.000 6.32 2.74 37.53 3.93
98 99 0.538746 AATTGACGGAAAACCGGGCT 60.539 50.000 6.32 0.00 37.53 5.19
99 100 1.166989 TAATTGACGGAAAACCGGGC 58.833 50.000 6.32 5.43 37.53 6.13
100 101 2.413108 CGTTAATTGACGGAAAACCGGG 60.413 50.000 14.46 0.00 39.27 5.73
101 102 2.841874 CGTTAATTGACGGAAAACCGG 58.158 47.619 14.46 0.00 39.27 5.28
110 111 2.422127 AGAATTGCCCCGTTAATTGACG 59.578 45.455 15.24 15.24 42.43 4.35
111 112 3.694566 AGAGAATTGCCCCGTTAATTGAC 59.305 43.478 0.00 0.00 0.00 3.18
112 113 3.963129 AGAGAATTGCCCCGTTAATTGA 58.037 40.909 0.00 0.00 0.00 2.57
113 114 4.399303 AGAAGAGAATTGCCCCGTTAATTG 59.601 41.667 0.00 0.00 0.00 2.32
114 115 4.600062 AGAAGAGAATTGCCCCGTTAATT 58.400 39.130 0.00 0.00 0.00 1.40
115 116 4.236527 AGAAGAGAATTGCCCCGTTAAT 57.763 40.909 0.00 0.00 0.00 1.40
116 117 3.713826 AGAAGAGAATTGCCCCGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
117 118 3.263425 AGAAGAAGAGAATTGCCCCGTTA 59.737 43.478 0.00 0.00 0.00 3.18
118 119 2.040412 AGAAGAAGAGAATTGCCCCGTT 59.960 45.455 0.00 0.00 0.00 4.44
119 120 1.630878 AGAAGAAGAGAATTGCCCCGT 59.369 47.619 0.00 0.00 0.00 5.28
120 121 2.409948 AGAAGAAGAGAATTGCCCCG 57.590 50.000 0.00 0.00 0.00 5.73
121 122 5.888161 TGATTAAGAAGAAGAGAATTGCCCC 59.112 40.000 0.00 0.00 0.00 5.80
122 123 7.396540 TTGATTAAGAAGAAGAGAATTGCCC 57.603 36.000 0.00 0.00 0.00 5.36
123 124 8.680903 TCATTGATTAAGAAGAAGAGAATTGCC 58.319 33.333 0.00 0.00 0.00 4.52
129 130 8.680903 GCCATTTCATTGATTAAGAAGAAGAGA 58.319 33.333 0.00 0.00 0.00 3.10
130 131 8.464404 TGCCATTTCATTGATTAAGAAGAAGAG 58.536 33.333 0.00 0.00 0.00 2.85
131 132 8.352137 TGCCATTTCATTGATTAAGAAGAAGA 57.648 30.769 0.00 0.00 0.00 2.87
132 133 8.991243 TTGCCATTTCATTGATTAAGAAGAAG 57.009 30.769 0.00 0.00 0.00 2.85
133 134 8.587608 ACTTGCCATTTCATTGATTAAGAAGAA 58.412 29.630 0.00 0.00 0.00 2.52
134 135 8.125978 ACTTGCCATTTCATTGATTAAGAAGA 57.874 30.769 0.00 0.00 0.00 2.87
135 136 8.248945 AGACTTGCCATTTCATTGATTAAGAAG 58.751 33.333 0.00 0.00 0.00 2.85
136 137 8.125978 AGACTTGCCATTTCATTGATTAAGAA 57.874 30.769 0.00 0.00 0.00 2.52
137 138 7.707624 AGACTTGCCATTTCATTGATTAAGA 57.292 32.000 0.00 0.00 0.00 2.10
138 139 8.767478 AAAGACTTGCCATTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
139 140 8.991026 CAAAAGACTTGCCATTTCATTGATTAA 58.009 29.630 0.00 0.00 0.00 1.40
140 141 7.118101 GCAAAAGACTTGCCATTTCATTGATTA 59.882 33.333 0.00 0.00 39.38 1.75
141 142 6.072893 GCAAAAGACTTGCCATTTCATTGATT 60.073 34.615 0.00 0.00 39.38 2.57
142 143 5.410439 GCAAAAGACTTGCCATTTCATTGAT 59.590 36.000 0.00 0.00 39.38 2.57
143 144 4.751098 GCAAAAGACTTGCCATTTCATTGA 59.249 37.500 0.00 0.00 39.38 2.57
144 145 5.025986 GCAAAAGACTTGCCATTTCATTG 57.974 39.130 0.00 0.00 39.38 2.82
154 155 2.223479 TGAAACGAGGCAAAAGACTTGC 60.223 45.455 0.78 0.78 44.22 4.01
155 156 3.691049 TGAAACGAGGCAAAAGACTTG 57.309 42.857 0.00 0.00 0.00 3.16
156 157 4.712122 TTTGAAACGAGGCAAAAGACTT 57.288 36.364 0.00 0.00 31.64 3.01
157 158 4.712122 TTTTGAAACGAGGCAAAAGACT 57.288 36.364 0.00 0.00 38.60 3.24
181 182 6.551227 AGTGGGAGAAGCTCAAGTAAATTTTT 59.449 34.615 0.00 0.00 31.08 1.94
182 183 6.071320 AGTGGGAGAAGCTCAAGTAAATTTT 58.929 36.000 0.00 0.00 31.08 1.82
183 184 5.635120 AGTGGGAGAAGCTCAAGTAAATTT 58.365 37.500 0.00 0.00 31.08 1.82
184 185 5.248380 AGTGGGAGAAGCTCAAGTAAATT 57.752 39.130 0.00 0.00 31.08 1.82
185 186 4.917906 AGTGGGAGAAGCTCAAGTAAAT 57.082 40.909 0.00 0.00 31.08 1.40
186 187 4.591498 TGTAGTGGGAGAAGCTCAAGTAAA 59.409 41.667 0.00 0.00 31.08 2.01
187 188 4.021368 GTGTAGTGGGAGAAGCTCAAGTAA 60.021 45.833 0.00 0.00 31.08 2.24
481 486 7.602753 TCGAGACAAATTTACTCATCTCTTGA 58.397 34.615 18.24 7.89 32.21 3.02
497 502 6.580041 GTGTTCGTCTTATAGTTCGAGACAAA 59.420 38.462 0.00 0.00 39.74 2.83
516 521 6.117911 TCACATGCTTAAATATGGTGTTCG 57.882 37.500 0.00 0.00 0.00 3.95
631 642 1.816835 ACAAATAGAGCGTCTCGGTGA 59.183 47.619 0.00 0.00 37.83 4.02
637 648 9.658799 ATGCATATAATTACAAATAGAGCGTCT 57.341 29.630 0.00 0.00 0.00 4.18
638 649 9.907576 GATGCATATAATTACAAATAGAGCGTC 57.092 33.333 0.00 0.00 0.00 5.19
639 650 9.435688 TGATGCATATAATTACAAATAGAGCGT 57.564 29.630 0.00 0.00 0.00 5.07
640 651 9.694520 GTGATGCATATAATTACAAATAGAGCG 57.305 33.333 0.00 0.00 0.00 5.03
706 732 1.299089 GGAGCGTGTTTGGTTGCAC 60.299 57.895 0.00 0.00 0.00 4.57
724 909 3.459063 GGTCCGTCCCTCCTTCGG 61.459 72.222 0.00 0.00 44.76 4.30
725 910 2.678934 TGGTCCGTCCCTCCTTCG 60.679 66.667 0.00 0.00 34.77 3.79
727 912 1.609794 GTCTGGTCCGTCCCTCCTT 60.610 63.158 0.00 0.00 34.77 3.36
806 996 5.260424 TCCCTCGAAATGATGAAAAATCCA 58.740 37.500 0.00 0.00 0.00 3.41
807 997 5.835113 TCCCTCGAAATGATGAAAAATCC 57.165 39.130 0.00 0.00 0.00 3.01
950 1148 2.041405 GGAGAGGGTGGGGAGGAG 60.041 72.222 0.00 0.00 0.00 3.69
953 1151 2.136878 CGATGGAGAGGGTGGGGAG 61.137 68.421 0.00 0.00 0.00 4.30
954 1152 2.041922 CGATGGAGAGGGTGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
955 1153 3.866582 GCGATGGAGAGGGTGGGG 61.867 72.222 0.00 0.00 0.00 4.96
956 1154 3.866582 GGCGATGGAGAGGGTGGG 61.867 72.222 0.00 0.00 0.00 4.61
957 1155 3.866582 GGGCGATGGAGAGGGTGG 61.867 72.222 0.00 0.00 0.00 4.61
958 1156 4.227134 CGGGCGATGGAGAGGGTG 62.227 72.222 0.00 0.00 0.00 4.61
1173 1381 2.106683 GCTGTCAAATCGGGACCGG 61.107 63.158 11.27 0.00 40.25 5.28
1316 1527 3.827898 CACGACGGAGGAGGAGGC 61.828 72.222 0.00 0.00 0.00 4.70
1409 1631 0.603707 CGCTTCTTTCCCTGCAGACA 60.604 55.000 17.39 0.00 0.00 3.41
1500 1723 1.333619 GCGCGGATCAAATAACCACAT 59.666 47.619 8.83 0.00 0.00 3.21
1502 1725 0.315869 CGCGCGGATCAAATAACCAC 60.316 55.000 24.84 0.00 0.00 4.16
1518 1741 0.857311 GCAATCACCGAATTCACGCG 60.857 55.000 3.53 3.53 0.00 6.01
1522 1745 3.505293 TGACAATGCAATCACCGAATTCA 59.495 39.130 6.22 0.00 0.00 2.57
1525 1748 4.517952 TTTGACAATGCAATCACCGAAT 57.482 36.364 0.00 0.00 0.00 3.34
1526 1749 3.998099 TTTGACAATGCAATCACCGAA 57.002 38.095 0.00 0.00 0.00 4.30
1527 1750 4.940654 TCTATTTGACAATGCAATCACCGA 59.059 37.500 0.00 0.00 0.00 4.69
1528 1751 5.233957 TCTATTTGACAATGCAATCACCG 57.766 39.130 0.00 0.00 0.00 4.94
1529 1752 6.019318 GCAATCTATTTGACAATGCAATCACC 60.019 38.462 0.00 0.00 37.53 4.02
1530 1753 6.755141 AGCAATCTATTTGACAATGCAATCAC 59.245 34.615 10.81 0.00 37.53 3.06
1531 1754 6.869695 AGCAATCTATTTGACAATGCAATCA 58.130 32.000 10.81 0.00 37.53 2.57
1532 1755 7.766219 AAGCAATCTATTTGACAATGCAATC 57.234 32.000 10.81 0.00 37.53 2.67
1533 1756 7.924412 CCTAAGCAATCTATTTGACAATGCAAT 59.076 33.333 10.81 3.45 37.53 3.56
1537 1760 8.080417 CCATCCTAAGCAATCTATTTGACAATG 58.920 37.037 0.00 0.00 37.53 2.82
1544 1767 8.636213 CAACAATCCATCCTAAGCAATCTATTT 58.364 33.333 0.00 0.00 0.00 1.40
1550 1773 5.018809 ACACAACAATCCATCCTAAGCAAT 58.981 37.500 0.00 0.00 0.00 3.56
1554 1777 3.623060 CGGACACAACAATCCATCCTAAG 59.377 47.826 0.00 0.00 34.35 2.18
1556 1779 2.679639 GCGGACACAACAATCCATCCTA 60.680 50.000 0.00 0.00 34.35 2.94
1557 1780 1.950484 GCGGACACAACAATCCATCCT 60.950 52.381 0.00 0.00 34.35 3.24
1558 1781 0.451783 GCGGACACAACAATCCATCC 59.548 55.000 0.00 0.00 34.35 3.51
1559 1782 1.135689 GTGCGGACACAACAATCCATC 60.136 52.381 0.63 0.00 46.61 3.51
1560 1783 0.881118 GTGCGGACACAACAATCCAT 59.119 50.000 0.63 0.00 46.61 3.41
1561 1784 2.326222 GTGCGGACACAACAATCCA 58.674 52.632 0.63 0.00 46.61 3.41
1575 1798 3.272439 ACACATCAACATTTCAGTGCG 57.728 42.857 0.00 0.00 0.00 5.34
1587 1810 4.994852 GCAAGTACAAGGACTACACATCAA 59.005 41.667 0.00 0.00 0.00 2.57
1673 1896 8.463607 GCAGAGTAGTCTTCTTCACTAATTACT 58.536 37.037 0.00 0.00 0.00 2.24
1674 1897 8.463607 AGCAGAGTAGTCTTCTTCACTAATTAC 58.536 37.037 0.00 0.00 0.00 1.89
1678 1901 6.242396 AGAGCAGAGTAGTCTTCTTCACTAA 58.758 40.000 1.06 0.00 0.00 2.24
1680 1903 4.662278 AGAGCAGAGTAGTCTTCTTCACT 58.338 43.478 1.06 0.00 0.00 3.41
1681 1904 5.646360 ACTAGAGCAGAGTAGTCTTCTTCAC 59.354 44.000 7.02 0.00 0.00 3.18
1682 1905 5.811190 ACTAGAGCAGAGTAGTCTTCTTCA 58.189 41.667 7.02 0.00 0.00 3.02
1684 1907 6.007703 ACAACTAGAGCAGAGTAGTCTTCTT 58.992 40.000 7.02 0.00 0.00 2.52
1686 1909 5.890424 ACAACTAGAGCAGAGTAGTCTTC 57.110 43.478 0.00 0.00 0.00 2.87
1687 1910 6.943718 ACTTACAACTAGAGCAGAGTAGTCTT 59.056 38.462 0.00 0.00 0.00 3.01
1688 1911 6.478129 ACTTACAACTAGAGCAGAGTAGTCT 58.522 40.000 0.00 0.00 0.00 3.24
1690 1913 7.527568 AAACTTACAACTAGAGCAGAGTAGT 57.472 36.000 0.00 0.00 0.00 2.73
1691 1914 7.329717 CCAAAACTTACAACTAGAGCAGAGTAG 59.670 40.741 0.00 0.00 0.00 2.57
1692 1915 7.152645 CCAAAACTTACAACTAGAGCAGAGTA 58.847 38.462 0.00 0.00 0.00 2.59
1693 1916 5.992217 CCAAAACTTACAACTAGAGCAGAGT 59.008 40.000 0.00 0.00 0.00 3.24
1694 1917 5.409826 CCCAAAACTTACAACTAGAGCAGAG 59.590 44.000 0.00 0.00 0.00 3.35
1695 1918 5.305585 CCCAAAACTTACAACTAGAGCAGA 58.694 41.667 0.00 0.00 0.00 4.26
1715 1946 6.482389 AAATATCAACCATCATATCCCCCA 57.518 37.500 0.00 0.00 0.00 4.96
1750 1991 7.914871 CCGCATATGAATGTTAATTCTTCACAA 59.085 33.333 6.97 0.00 42.40 3.33
1753 1994 7.800155 TCCGCATATGAATGTTAATTCTTCA 57.200 32.000 6.97 0.00 42.40 3.02
1757 1998 9.121517 CTCAATTCCGCATATGAATGTTAATTC 57.878 33.333 6.97 0.00 42.28 2.17
1758 1999 8.632679 ACTCAATTCCGCATATGAATGTTAATT 58.367 29.630 6.97 0.76 35.38 1.40
1759 2000 8.169977 ACTCAATTCCGCATATGAATGTTAAT 57.830 30.769 6.97 0.00 35.38 1.40
1760 2001 7.566760 ACTCAATTCCGCATATGAATGTTAA 57.433 32.000 6.97 0.00 35.38 2.01
1762 2003 6.319658 AGAACTCAATTCCGCATATGAATGTT 59.680 34.615 6.97 0.00 38.16 2.71
1763 2004 5.824624 AGAACTCAATTCCGCATATGAATGT 59.175 36.000 6.97 0.00 38.16 2.71
1766 2007 4.816385 GGAGAACTCAATTCCGCATATGAA 59.184 41.667 6.97 0.00 38.16 2.57
1769 2010 4.422073 TGGAGAACTCAATTCCGCATAT 57.578 40.909 4.23 0.00 38.16 1.78
1773 2014 2.098117 CCAATGGAGAACTCAATTCCGC 59.902 50.000 0.00 0.00 38.16 5.54
1774 2015 3.347216 ACCAATGGAGAACTCAATTCCG 58.653 45.455 6.16 0.00 38.16 4.30
1776 2017 6.581171 AAGAACCAATGGAGAACTCAATTC 57.419 37.500 6.16 0.00 31.09 2.17
1786 2027 3.064207 TCGACGAAAAGAACCAATGGAG 58.936 45.455 6.16 0.00 0.00 3.86
1788 2029 2.159627 CCTCGACGAAAAGAACCAATGG 59.840 50.000 0.00 0.00 0.00 3.16
1789 2030 2.806244 ACCTCGACGAAAAGAACCAATG 59.194 45.455 0.00 0.00 0.00 2.82
1790 2031 3.121738 ACCTCGACGAAAAGAACCAAT 57.878 42.857 0.00 0.00 0.00 3.16
1818 2061 1.207089 TCTCGCCTTACAATCCTGTGG 59.793 52.381 0.00 0.00 36.96 4.17
1824 2067 8.559536 TCAAAATAATCATCTCGCCTTACAATC 58.440 33.333 0.00 0.00 0.00 2.67
1847 2094 8.250143 TGTCTAAGCTGGACTGAATATATCAA 57.750 34.615 17.28 0.00 37.67 2.57
1853 2100 4.530553 TGGTTGTCTAAGCTGGACTGAATA 59.469 41.667 17.28 0.00 35.38 1.75
1898 2145 5.639082 CCTCATTTTACCAACAAAAGCATCC 59.361 40.000 0.00 0.00 31.29 3.51
1900 2147 4.996758 GCCTCATTTTACCAACAAAAGCAT 59.003 37.500 0.00 0.00 31.29 3.79
1901 2148 4.100808 AGCCTCATTTTACCAACAAAAGCA 59.899 37.500 0.00 0.00 31.29 3.91
1902 2149 4.448732 CAGCCTCATTTTACCAACAAAAGC 59.551 41.667 0.00 0.00 31.29 3.51
1903 2150 5.600696 ACAGCCTCATTTTACCAACAAAAG 58.399 37.500 0.00 0.00 31.29 2.27
1905 2152 6.686630 CATACAGCCTCATTTTACCAACAAA 58.313 36.000 0.00 0.00 0.00 2.83
1906 2153 5.336372 GCATACAGCCTCATTTTACCAACAA 60.336 40.000 0.00 0.00 37.23 2.83
1930 2179 4.387862 GCAAGAAGACAAATTTGGATGCAG 59.612 41.667 21.74 7.53 0.00 4.41
1980 2259 4.422840 CACAAAATGTTCAAGCAGTGACA 58.577 39.130 0.00 0.00 35.39 3.58
1985 2264 3.450578 AGTGCACAAAATGTTCAAGCAG 58.549 40.909 21.04 0.00 28.32 4.24
2053 2332 4.136796 CTGGTATAGCATTAGCCAAGCAA 58.863 43.478 4.84 0.00 43.56 3.91
2067 2346 4.744795 AAGGACAAGACAGCTGGTATAG 57.255 45.455 19.93 6.29 0.00 1.31
2068 2347 5.499004 AAAAGGACAAGACAGCTGGTATA 57.501 39.130 19.93 0.00 0.00 1.47
2072 2355 2.485814 GCTAAAAGGACAAGACAGCTGG 59.514 50.000 19.93 1.96 0.00 4.85
2105 2388 7.728532 ACCCTTGAAACAACCTCTAAATTGTAT 59.271 33.333 0.00 0.00 38.08 2.29
2106 2389 7.064229 ACCCTTGAAACAACCTCTAAATTGTA 58.936 34.615 0.00 0.00 38.08 2.41
2113 2396 6.256643 AGTTAACCCTTGAAACAACCTCTA 57.743 37.500 0.88 0.00 0.00 2.43
2116 2399 5.955959 AGAAAGTTAACCCTTGAAACAACCT 59.044 36.000 0.88 0.00 0.00 3.50
2124 2407 6.836527 TGGAAATTCAGAAAGTTAACCCTTGA 59.163 34.615 0.88 0.00 0.00 3.02
2153 2436 3.109619 GTGCGTCAGAGTCATAACTAGC 58.890 50.000 0.00 0.00 35.28 3.42
2156 2439 2.094494 CAGGTGCGTCAGAGTCATAACT 60.094 50.000 0.00 0.00 38.88 2.24
2160 2443 0.681733 AACAGGTGCGTCAGAGTCAT 59.318 50.000 0.00 0.00 0.00 3.06
2167 2450 2.206750 GTAAGTTCAACAGGTGCGTCA 58.793 47.619 0.00 0.00 0.00 4.35
2171 2454 5.941948 AGTATTGTAAGTTCAACAGGTGC 57.058 39.130 0.00 0.00 0.00 5.01
2177 2460 5.472137 TGCCTGGAAGTATTGTAAGTTCAAC 59.528 40.000 0.00 0.00 31.56 3.18
2187 2470 7.646314 CAAATTCTAGATGCCTGGAAGTATTG 58.354 38.462 0.00 0.00 42.04 1.90
2189 2472 5.767168 GCAAATTCTAGATGCCTGGAAGTAT 59.233 40.000 5.63 0.00 42.04 2.12
2195 2479 4.996788 AAAGCAAATTCTAGATGCCTGG 57.003 40.909 12.19 0.00 40.93 4.45
2253 2537 3.620427 AACCAAGAACAAAAACCCACC 57.380 42.857 0.00 0.00 0.00 4.61
2254 2538 4.320023 ACAAACCAAGAACAAAAACCCAC 58.680 39.130 0.00 0.00 0.00 4.61
2256 2540 8.896320 ATATTACAAACCAAGAACAAAAACCC 57.104 30.769 0.00 0.00 0.00 4.11
2257 2541 9.535878 TGATATTACAAACCAAGAACAAAAACC 57.464 29.630 0.00 0.00 0.00 3.27
2287 2572 7.165460 TGTATCTCCATGAAACGAAGTCTTA 57.835 36.000 0.00 0.00 45.00 2.10
2290 2575 6.910536 AATGTATCTCCATGAAACGAAGTC 57.089 37.500 0.00 0.00 45.00 3.01
2294 2579 6.429692 ACACAAAATGTATCTCCATGAAACGA 59.570 34.615 0.00 0.00 40.88 3.85
2295 2580 6.524239 CACACAAAATGTATCTCCATGAAACG 59.476 38.462 0.00 0.00 40.64 3.60
2310 2603 6.017770 ACAAGCATGATTTTCCACACAAAATG 60.018 34.615 0.00 0.00 36.33 2.32
2318 2611 8.016801 CCAAATAAAACAAGCATGATTTTCCAC 58.983 33.333 2.47 0.00 34.00 4.02
2321 2614 8.772705 TCACCAAATAAAACAAGCATGATTTTC 58.227 29.630 2.47 0.00 34.00 2.29
2328 2621 4.284234 AGCCTCACCAAATAAAACAAGCAT 59.716 37.500 0.00 0.00 0.00 3.79
2349 2642 3.812053 AGATCGCATTGATAAGGAACAGC 59.188 43.478 0.00 0.00 37.47 4.40
2366 2659 3.620374 ACAAATCACAGCAGCTAAGATCG 59.380 43.478 8.74 6.65 0.00 3.69
2399 2735 9.349713 TCAAAATAAGAGTTACAACCATTGAGT 57.650 29.630 0.00 0.00 0.00 3.41
2484 2836 6.195700 ACAAGGCCTAACTGAGAATAGTCTA 58.804 40.000 5.16 0.00 32.80 2.59
2498 2850 3.264964 AGGATTAACCGAACAAGGCCTAA 59.735 43.478 5.16 0.00 44.74 2.69
2499 2851 2.841881 AGGATTAACCGAACAAGGCCTA 59.158 45.455 5.16 0.00 44.74 3.93
2500 2852 1.633945 AGGATTAACCGAACAAGGCCT 59.366 47.619 0.00 0.00 44.74 5.19
2501 2853 2.014857 GAGGATTAACCGAACAAGGCC 58.985 52.381 0.00 0.00 44.74 5.19
2502 2854 2.937149 GAGAGGATTAACCGAACAAGGC 59.063 50.000 0.00 0.00 44.74 4.35
2503 2855 3.532542 GGAGAGGATTAACCGAACAAGG 58.467 50.000 0.00 0.00 44.74 3.61
2504 2856 3.532542 GGGAGAGGATTAACCGAACAAG 58.467 50.000 0.00 0.00 44.74 3.16
2505 2857 2.237893 GGGGAGAGGATTAACCGAACAA 59.762 50.000 0.00 0.00 44.74 2.83
2506 2858 1.835531 GGGGAGAGGATTAACCGAACA 59.164 52.381 0.00 0.00 44.74 3.18
2507 2859 1.835531 TGGGGAGAGGATTAACCGAAC 59.164 52.381 0.00 0.00 44.74 3.95
2508 2860 2.257391 TGGGGAGAGGATTAACCGAA 57.743 50.000 0.00 0.00 44.74 4.30
2509 2861 2.116238 CTTGGGGAGAGGATTAACCGA 58.884 52.381 0.00 0.00 44.74 4.69
2510 2862 2.103263 CTCTTGGGGAGAGGATTAACCG 59.897 54.545 0.00 0.00 46.77 4.44
2511 2863 3.847671 CTCTTGGGGAGAGGATTAACC 57.152 52.381 0.00 0.00 46.77 2.85
2520 2872 0.041833 CTCCAGTCCTCTTGGGGAGA 59.958 60.000 0.00 0.00 46.38 3.71
2521 2873 0.980231 CCTCCAGTCCTCTTGGGGAG 60.980 65.000 0.00 0.00 43.76 4.30
2522 2874 1.081092 CCTCCAGTCCTCTTGGGGA 59.919 63.158 0.00 0.00 29.27 4.81
2523 2875 1.997874 CCCTCCAGTCCTCTTGGGG 60.998 68.421 0.00 0.00 35.33 4.96
2524 2876 1.997874 CCCCTCCAGTCCTCTTGGG 60.998 68.421 0.00 0.00 34.68 4.12
2525 2877 0.327000 ATCCCCTCCAGTCCTCTTGG 60.327 60.000 0.00 0.00 0.00 3.61
2526 2878 1.211457 CAATCCCCTCCAGTCCTCTTG 59.789 57.143 0.00 0.00 0.00 3.02
2527 2879 1.589414 CAATCCCCTCCAGTCCTCTT 58.411 55.000 0.00 0.00 0.00 2.85
2528 2880 0.327000 CCAATCCCCTCCAGTCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
2529 2881 1.988982 GCCAATCCCCTCCAGTCCTC 61.989 65.000 0.00 0.00 0.00 3.71
2530 2882 2.003548 GCCAATCCCCTCCAGTCCT 61.004 63.158 0.00 0.00 0.00 3.85
2531 2883 1.863155 TTGCCAATCCCCTCCAGTCC 61.863 60.000 0.00 0.00 0.00 3.85
2532 2884 0.394899 CTTGCCAATCCCCTCCAGTC 60.395 60.000 0.00 0.00 0.00 3.51
2533 2885 1.693640 CTTGCCAATCCCCTCCAGT 59.306 57.895 0.00 0.00 0.00 4.00
2534 2886 1.076485 CCTTGCCAATCCCCTCCAG 60.076 63.158 0.00 0.00 0.00 3.86
2535 2887 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
2536 2888 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
2537 2889 1.406903 CAATCCTTGCCAATCCCCTC 58.593 55.000 0.00 0.00 0.00 4.30
2538 2890 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
2539 2891 0.325577 ACCAATCCTTGCCAATCCCC 60.326 55.000 0.00 0.00 0.00 4.81
2540 2892 1.482182 GAACCAATCCTTGCCAATCCC 59.518 52.381 0.00 0.00 0.00 3.85
2541 2893 1.134946 CGAACCAATCCTTGCCAATCC 59.865 52.381 0.00 0.00 0.00 3.01
2542 2894 1.818674 ACGAACCAATCCTTGCCAATC 59.181 47.619 0.00 0.00 0.00 2.67
2543 2895 1.923356 ACGAACCAATCCTTGCCAAT 58.077 45.000 0.00 0.00 0.00 3.16
2544 2896 2.570415 TACGAACCAATCCTTGCCAA 57.430 45.000 0.00 0.00 0.00 4.52
2545 2897 2.799126 ATACGAACCAATCCTTGCCA 57.201 45.000 0.00 0.00 0.00 4.92
2546 2898 4.082463 TCAAAATACGAACCAATCCTTGCC 60.082 41.667 0.00 0.00 0.00 4.52
2547 2899 4.857037 GTCAAAATACGAACCAATCCTTGC 59.143 41.667 0.00 0.00 0.00 4.01
2548 2900 6.254281 AGTCAAAATACGAACCAATCCTTG 57.746 37.500 0.00 0.00 0.00 3.61
2549 2901 6.894339 AAGTCAAAATACGAACCAATCCTT 57.106 33.333 0.00 0.00 0.00 3.36
2550 2902 9.675464 TTATAAGTCAAAATACGAACCAATCCT 57.325 29.630 0.00 0.00 0.00 3.24
2551 2903 9.931210 CTTATAAGTCAAAATACGAACCAATCC 57.069 33.333 4.18 0.00 0.00 3.01
2554 2906 9.158233 CCTCTTATAAGTCAAAATACGAACCAA 57.842 33.333 12.19 0.00 0.00 3.67
2555 2907 8.316214 ACCTCTTATAAGTCAAAATACGAACCA 58.684 33.333 12.19 0.00 0.00 3.67
2556 2908 8.713737 ACCTCTTATAAGTCAAAATACGAACC 57.286 34.615 12.19 0.00 0.00 3.62
2565 2917 9.470399 GGGGATTTAAACCTCTTATAAGTCAAA 57.530 33.333 12.19 5.68 0.00 2.69
2566 2918 8.057011 GGGGGATTTAAACCTCTTATAAGTCAA 58.943 37.037 12.19 0.00 0.00 3.18
2567 2919 7.407918 AGGGGGATTTAAACCTCTTATAAGTCA 59.592 37.037 12.19 0.00 32.28 3.41
2568 2920 7.813331 AGGGGGATTTAAACCTCTTATAAGTC 58.187 38.462 12.19 0.00 32.28 3.01
2569 2921 7.782695 AGGGGGATTTAAACCTCTTATAAGT 57.217 36.000 12.19 0.00 32.28 2.24
2577 2929 5.359484 GGGTTTGAGGGGGATTTAAACCTC 61.359 50.000 13.24 13.24 45.86 3.85
2578 2930 3.503412 GGGTTTGAGGGGGATTTAAACCT 60.503 47.826 14.54 0.00 45.86 3.50
2579 2931 2.835764 GGGTTTGAGGGGGATTTAAACC 59.164 50.000 0.00 0.00 45.86 3.27
2580 2932 2.835764 GGGGTTTGAGGGGGATTTAAAC 59.164 50.000 0.00 0.00 0.00 2.01
2581 2933 2.730816 AGGGGTTTGAGGGGGATTTAAA 59.269 45.455 0.00 0.00 0.00 1.52
2582 2934 2.374179 AGGGGTTTGAGGGGGATTTAA 58.626 47.619 0.00 0.00 0.00 1.52
2583 2935 2.084121 AGGGGTTTGAGGGGGATTTA 57.916 50.000 0.00 0.00 0.00 1.40
2584 2936 1.078823 GAAGGGGTTTGAGGGGGATTT 59.921 52.381 0.00 0.00 0.00 2.17
2585 2937 0.710588 GAAGGGGTTTGAGGGGGATT 59.289 55.000 0.00 0.00 0.00 3.01
2586 2938 0.479589 TGAAGGGGTTTGAGGGGGAT 60.480 55.000 0.00 0.00 0.00 3.85
2587 2939 0.703056 TTGAAGGGGTTTGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
2588 2940 0.413434 ATTGAAGGGGTTTGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
2589 2941 1.619704 GGATTGAAGGGGTTTGAGGGG 60.620 57.143 0.00 0.00 0.00 4.79
2590 2942 1.077005 TGGATTGAAGGGGTTTGAGGG 59.923 52.381 0.00 0.00 0.00 4.30
2591 2943 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
2592 2944 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
2593 2945 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
2594 2946 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
2595 2947 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
2596 2948 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
2597 2949 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
2598 2950 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
2608 2960 0.948623 TTGCGTGTGAATCCGAGTGG 60.949 55.000 0.00 0.00 0.00 4.00
2609 2961 0.163788 GTTGCGTGTGAATCCGAGTG 59.836 55.000 0.00 0.00 0.00 3.51
2610 2962 0.949105 GGTTGCGTGTGAATCCGAGT 60.949 55.000 0.00 0.00 0.00 4.18
2611 2963 1.787847 GGTTGCGTGTGAATCCGAG 59.212 57.895 0.00 0.00 0.00 4.63
2612 2964 2.024868 CGGTTGCGTGTGAATCCGA 61.025 57.895 0.00 0.00 40.29 4.55
2613 2965 1.561717 TTCGGTTGCGTGTGAATCCG 61.562 55.000 0.00 0.00 39.40 4.18
2614 2966 0.110373 GTTCGGTTGCGTGTGAATCC 60.110 55.000 0.00 0.00 0.00 3.01
2615 2967 0.584396 TGTTCGGTTGCGTGTGAATC 59.416 50.000 0.00 0.00 0.00 2.52
2616 2968 1.002900 CTTGTTCGGTTGCGTGTGAAT 60.003 47.619 0.00 0.00 0.00 2.57
2617 2969 0.375454 CTTGTTCGGTTGCGTGTGAA 59.625 50.000 0.00 0.00 0.00 3.18
2618 2970 1.433053 CCTTGTTCGGTTGCGTGTGA 61.433 55.000 0.00 0.00 0.00 3.58
2619 2971 1.010125 CCTTGTTCGGTTGCGTGTG 60.010 57.895 0.00 0.00 0.00 3.82
2620 2972 2.830285 GCCTTGTTCGGTTGCGTGT 61.830 57.895 0.00 0.00 0.00 4.49
2621 2973 2.051345 GCCTTGTTCGGTTGCGTG 60.051 61.111 0.00 0.00 0.00 5.34
2622 2974 3.284449 GGCCTTGTTCGGTTGCGT 61.284 61.111 0.00 0.00 0.00 5.24
2623 2975 1.231958 TAAGGCCTTGTTCGGTTGCG 61.232 55.000 28.77 0.00 0.00 4.85
2624 2976 0.521735 CTAAGGCCTTGTTCGGTTGC 59.478 55.000 28.77 0.00 0.00 4.17
2625 2977 1.165270 CCTAAGGCCTTGTTCGGTTG 58.835 55.000 28.77 0.10 0.00 3.77
2626 2978 1.061546 TCCTAAGGCCTTGTTCGGTT 58.938 50.000 28.77 0.57 0.00 4.44
2627 2979 1.065418 CATCCTAAGGCCTTGTTCGGT 60.065 52.381 28.77 5.58 0.00 4.69
2628 2980 1.668419 CATCCTAAGGCCTTGTTCGG 58.332 55.000 28.77 20.65 0.00 4.30
2629 2981 1.065418 ACCATCCTAAGGCCTTGTTCG 60.065 52.381 28.77 12.86 0.00 3.95
2630 2982 2.026262 TCACCATCCTAAGGCCTTGTTC 60.026 50.000 28.77 0.00 0.00 3.18
2631 2983 1.992557 TCACCATCCTAAGGCCTTGTT 59.007 47.619 28.77 4.09 0.00 2.83
2632 2984 1.668826 TCACCATCCTAAGGCCTTGT 58.331 50.000 28.77 13.19 0.00 3.16
2633 2985 2.025887 ACTTCACCATCCTAAGGCCTTG 60.026 50.000 28.77 16.94 0.00 3.61
2634 2986 2.025887 CACTTCACCATCCTAAGGCCTT 60.026 50.000 24.18 24.18 0.00 4.35
2635 2987 1.561542 CACTTCACCATCCTAAGGCCT 59.438 52.381 0.00 0.00 0.00 5.19
2636 2988 2.019156 GCACTTCACCATCCTAAGGCC 61.019 57.143 0.00 0.00 0.00 5.19
2637 2989 1.065126 AGCACTTCACCATCCTAAGGC 60.065 52.381 0.00 0.00 0.00 4.35
2638 2990 3.356529 AAGCACTTCACCATCCTAAGG 57.643 47.619 0.00 0.00 0.00 2.69
2639 2991 5.344743 TCTAAGCACTTCACCATCCTAAG 57.655 43.478 0.00 0.00 0.00 2.18
2653 3005 2.770164 ACACAGGGACATCTAAGCAC 57.230 50.000 0.00 0.00 0.00 4.40
2744 3096 5.403466 GCAAAGTGATTTGTCTCAAATGGAC 59.597 40.000 11.60 8.44 34.56 4.02
2771 3192 2.094234 ACAGTTGAGCCAACAAAACACC 60.094 45.455 16.93 0.00 45.66 4.16
2798 3219 8.635765 AACAACTAAAGTGGACAATGATATGT 57.364 30.769 0.00 0.00 35.90 2.29
2837 3258 5.100259 ACACATATTCGTTCAGTTAGACCG 58.900 41.667 0.00 0.00 32.89 4.79
2954 3375 4.452455 GGAGACGGAATTATGTATGCAAGG 59.548 45.833 0.00 0.00 0.00 3.61
2959 3380 4.956085 TGGTGGAGACGGAATTATGTATG 58.044 43.478 0.00 0.00 0.00 2.39
2962 3383 3.992943 TTGGTGGAGACGGAATTATGT 57.007 42.857 0.00 0.00 0.00 2.29
2983 3404 1.271597 ACTGAAATTTCGCAGCCTCCT 60.272 47.619 13.34 0.00 35.57 3.69
2984 3405 1.131315 GACTGAAATTTCGCAGCCTCC 59.869 52.381 13.34 0.00 35.57 4.30
2997 3418 4.630644 AAGATGCAGGAGAAGACTGAAA 57.369 40.909 0.00 0.00 38.20 2.69
3251 3672 2.097825 GCTCAGAAACATGGAGGCAAT 58.902 47.619 0.00 0.00 0.00 3.56
3266 3687 8.787852 AGAAATAAAGTTAGTTCCAAAGCTCAG 58.212 33.333 7.45 0.00 38.20 3.35
3267 3688 8.567948 CAGAAATAAAGTTAGTTCCAAAGCTCA 58.432 33.333 7.45 0.00 38.20 4.26
3268 3689 7.539022 GCAGAAATAAAGTTAGTTCCAAAGCTC 59.461 37.037 7.45 0.00 38.20 4.09
3269 3690 7.014230 TGCAGAAATAAAGTTAGTTCCAAAGCT 59.986 33.333 7.45 0.00 38.20 3.74
3270 3691 7.145323 TGCAGAAATAAAGTTAGTTCCAAAGC 58.855 34.615 7.45 7.66 38.20 3.51
3271 3692 7.327032 GCTGCAGAAATAAAGTTAGTTCCAAAG 59.673 37.037 20.43 4.75 38.20 2.77
3272 3693 7.014230 AGCTGCAGAAATAAAGTTAGTTCCAAA 59.986 33.333 20.43 0.00 38.20 3.28
3273 3694 6.490040 AGCTGCAGAAATAAAGTTAGTTCCAA 59.510 34.615 20.43 0.00 38.20 3.53
3275 3696 6.502136 AGCTGCAGAAATAAAGTTAGTTCC 57.498 37.500 20.43 0.00 38.20 3.62
3279 3700 6.150140 ACCTCAAGCTGCAGAAATAAAGTTAG 59.850 38.462 20.43 0.00 0.00 2.34
3292 3716 1.354031 TCCCAATAACCTCAAGCTGCA 59.646 47.619 1.02 0.00 0.00 4.41
3341 3765 1.369692 GTGGTGGTGGTCATCGTCA 59.630 57.895 0.00 0.00 0.00 4.35
3347 3774 2.058705 TCTTAATGGTGGTGGTGGTCA 58.941 47.619 0.00 0.00 0.00 4.02
3377 3804 3.609853 TGTTTCATCAGTAGACATGCCC 58.390 45.455 0.00 0.00 0.00 5.36
3412 3839 7.823149 AAGCATCTCAGCAACAAAAATAATC 57.177 32.000 0.00 0.00 36.85 1.75
3533 3960 4.737476 AGGGCCCTCTGCTGCTCT 62.737 66.667 22.28 0.00 40.92 4.09
3542 3969 0.919710 ACTATGTTTCCAGGGCCCTC 59.080 55.000 25.77 11.55 0.00 4.30
3579 4006 0.730265 TATTCGTGTGCGGCAATTCC 59.270 50.000 3.23 0.00 38.89 3.01
3625 4054 2.156098 CGGGTCGAAAATGAAAGGGAA 58.844 47.619 0.00 0.00 0.00 3.97
3643 4072 4.752101 CCTTATTGACTAGATGAAAGGCGG 59.248 45.833 0.00 0.00 0.00 6.13
3747 4176 1.658931 CGTCAAAGCGAAAACGATGCA 60.659 47.619 0.00 0.00 37.31 3.96
3772 4201 4.335416 TCAGAAGGACAAACAATGGATCC 58.665 43.478 4.20 4.20 0.00 3.36
3778 4207 4.641396 TCGTCATCAGAAGGACAAACAAT 58.359 39.130 6.45 0.00 35.96 2.71
3788 4217 5.347342 AGCTCTGTTTATCGTCATCAGAAG 58.653 41.667 0.00 0.00 35.26 2.85
3790 4219 4.991153 AGCTCTGTTTATCGTCATCAGA 57.009 40.909 0.00 0.00 34.62 3.27
3791 4220 5.105063 TCAAGCTCTGTTTATCGTCATCAG 58.895 41.667 0.00 0.00 0.00 2.90
3867 4309 2.867647 GCCAAACTGAAGGTTGGAATGC 60.868 50.000 27.59 10.64 38.29 3.56
3873 4315 2.977772 TTTGGCCAAACTGAAGGTTG 57.022 45.000 27.13 0.88 38.29 3.77
3880 4322 1.515081 CCTGCATTTTGGCCAAACTG 58.485 50.000 33.15 33.15 35.07 3.16
3881 4323 0.250424 GCCTGCATTTTGGCCAAACT 60.250 50.000 30.43 22.51 43.11 2.66
3882 4324 2.246841 GCCTGCATTTTGGCCAAAC 58.753 52.632 30.43 19.18 43.11 2.93
3893 4335 1.153524 TGGTTGGTGAAGCCTGCAT 59.846 52.632 0.00 0.00 38.35 3.96
3921 4363 0.739813 GGATAGTGCGGTGTCACCAC 60.740 60.000 21.91 12.94 38.47 4.16
3932 4374 3.118992 TCAGTGACATCAGTGGATAGTGC 60.119 47.826 15.12 0.00 45.06 4.40
3998 4441 4.154918 AGAATTCCATTCACGCTTTCAGTC 59.845 41.667 0.65 0.00 41.71 3.51
4000 4443 4.656041 GAGAATTCCATTCACGCTTTCAG 58.344 43.478 0.65 0.00 41.71 3.02
4009 4452 5.064707 GGAATTTCGTCGAGAATTCCATTCA 59.935 40.000 31.12 4.59 41.23 2.57
4147 4602 8.190784 ACGACATTCTCAACTTGAAATCTTTTT 58.809 29.630 0.00 0.00 0.00 1.94
4152 4607 7.632515 CGATAACGACATTCTCAACTTGAAATC 59.367 37.037 0.00 0.00 42.66 2.17
4175 4637 6.015350 TCGATCCCTAAATCTTAAAGAGCGAT 60.015 38.462 0.00 0.00 35.99 4.58
4179 4641 8.894768 AATGTCGATCCCTAAATCTTAAAGAG 57.105 34.615 0.00 0.00 0.00 2.85
4186 4648 5.989477 TGTTGAATGTCGATCCCTAAATCT 58.011 37.500 0.00 0.00 0.00 2.40
4192 4654 3.007940 TGACTTGTTGAATGTCGATCCCT 59.992 43.478 0.00 0.00 33.81 4.20
4193 4655 3.334691 TGACTTGTTGAATGTCGATCCC 58.665 45.455 0.00 0.00 33.81 3.85
4199 4663 5.043248 CCCAGTTTTGACTTGTTGAATGTC 58.957 41.667 0.00 0.00 0.00 3.06
4207 4671 5.063880 GTCATACTCCCAGTTTTGACTTGT 58.936 41.667 10.15 0.00 37.27 3.16
4227 4691 0.318699 CGAGCTCCTTCACGTTGTCA 60.319 55.000 8.47 0.00 0.00 3.58
4231 4695 1.289380 GTCCGAGCTCCTTCACGTT 59.711 57.895 8.47 0.00 0.00 3.99
4233 4697 1.994507 ATCGTCCGAGCTCCTTCACG 61.995 60.000 8.47 11.14 0.00 4.35
4236 4700 1.066587 CCATCGTCCGAGCTCCTTC 59.933 63.158 8.47 0.00 0.00 3.46
4246 4710 0.390860 CTGATCCCTGACCATCGTCC 59.609 60.000 0.00 0.00 38.32 4.79
4249 4713 1.070445 GCCTGATCCCTGACCATCG 59.930 63.158 0.00 0.00 0.00 3.84
4257 4721 2.851102 CCATCCCGCCTGATCCCT 60.851 66.667 0.00 0.00 0.00 4.20
4260 4724 3.873026 CTCGCCATCCCGCCTGATC 62.873 68.421 0.00 0.00 0.00 2.92
4266 4730 3.849951 TTCTCCTCGCCATCCCGC 61.850 66.667 0.00 0.00 0.00 6.13
4267 4731 2.107141 GTTCTCCTCGCCATCCCG 59.893 66.667 0.00 0.00 0.00 5.14
4268 4732 2.107141 CGTTCTCCTCGCCATCCC 59.893 66.667 0.00 0.00 0.00 3.85
4279 4743 2.032681 AGCACCTTGGCCGTTCTC 59.967 61.111 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.