Multiple sequence alignment - TraesCS7A01G088900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G088900 chr7A 100.000 4301 0 0 1 4301 53927417 53923117 0.000000e+00 7943
1 TraesCS7A01G088900 chr7D 92.947 3644 217 23 668 4300 51518724 51515110 0.000000e+00 5269
2 TraesCS7A01G088900 chr7D 75.610 492 84 23 209 667 404375857 404375369 1.210000e-50 211
3 TraesCS7A01G088900 chr7D 75.205 488 89 24 209 667 404606816 404606332 7.290000e-48 202
4 TraesCS7A01G088900 chr4A 93.668 2890 154 18 800 3661 665601236 665604124 0.000000e+00 4296
5 TraesCS7A01G088900 chr4A 86.241 407 33 10 3862 4247 665604326 665604730 1.850000e-113 420
6 TraesCS7A01G088900 chr3B 80.053 757 78 26 3113 3826 543948100 543947374 1.070000e-135 494
7 TraesCS7A01G088900 chr3B 80.053 757 78 26 3113 3826 543985758 543985032 1.070000e-135 494
8 TraesCS7A01G088900 chr3B 75.071 353 56 15 347 669 697127170 697126820 7.500000e-28 135
9 TraesCS7A01G088900 chr4D 76.683 609 106 24 69 654 337999715 338000310 5.400000e-79 305
10 TraesCS7A01G088900 chr1D 78.118 457 82 13 69 511 293590829 293591281 1.520000e-69 274
11 TraesCS7A01G088900 chr1D 78.538 424 82 6 96 511 430320819 430320397 1.970000e-68 270
12 TraesCS7A01G088900 chr1D 83.077 130 18 4 539 665 7064003 7063875 9.770000e-22 115
13 TraesCS7A01G088900 chr7B 82.623 305 50 2 210 511 332810265 332810569 2.550000e-67 267
14 TraesCS7A01G088900 chr7B 81.169 308 55 2 207 511 607932406 607932099 1.190000e-60 244
15 TraesCS7A01G088900 chr7B 82.014 139 20 5 517 653 122854024 122854159 3.520000e-21 113
16 TraesCS7A01G088900 chr6D 77.802 464 76 17 67 511 156427533 156427078 1.190000e-65 261
17 TraesCS7A01G088900 chr6D 75.367 613 107 24 80 653 189414907 189414300 5.520000e-64 255
18 TraesCS7A01G088900 chr5B 77.162 451 96 4 207 654 370472335 370472781 5.520000e-64 255
19 TraesCS7A01G088900 chr2A 81.788 302 51 3 198 496 11305064 11305364 2.570000e-62 250
20 TraesCS7A01G088900 chr2A 86.207 116 16 0 539 654 622287552 622287667 4.520000e-25 126
21 TraesCS7A01G088900 chr2D 81.494 308 51 3 207 511 542197866 542198170 9.240000e-62 248
22 TraesCS7A01G088900 chr5D 73.023 430 82 17 277 674 396847482 396847055 2.100000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G088900 chr7A 53923117 53927417 4300 True 7943 7943 100.0000 1 4301 1 chr7A.!!$R1 4300
1 TraesCS7A01G088900 chr7D 51515110 51518724 3614 True 5269 5269 92.9470 668 4300 1 chr7D.!!$R1 3632
2 TraesCS7A01G088900 chr4A 665601236 665604730 3494 False 2358 4296 89.9545 800 4247 2 chr4A.!!$F1 3447
3 TraesCS7A01G088900 chr3B 543947374 543948100 726 True 494 494 80.0530 3113 3826 1 chr3B.!!$R1 713
4 TraesCS7A01G088900 chr3B 543985032 543985758 726 True 494 494 80.0530 3113 3826 1 chr3B.!!$R2 713
5 TraesCS7A01G088900 chr4D 337999715 338000310 595 False 305 305 76.6830 69 654 1 chr4D.!!$F1 585
6 TraesCS7A01G088900 chr6D 189414300 189414907 607 True 255 255 75.3670 80 653 1 chr6D.!!$R2 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 562 0.107945 GGCTCGTCTCAGGCTCATTT 60.108 55.0 0.00 0.0 36.04 2.32 F
1291 1333 0.539051 CTTCCTGGAGTTGAGGCGAT 59.461 55.0 0.00 0.0 0.00 4.58 F
1626 1668 0.322997 CCTGGACGGCCATGGTAAAA 60.323 55.0 12.52 0.0 44.91 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1532 0.163788 CACATTTGGAGCGTCGACAC 59.836 55.000 17.16 5.80 0.00 3.67 R
3102 3286 1.202794 TCATTGCCACTCAGTCTGCAA 60.203 47.619 12.49 12.49 46.51 4.08 R
3580 3768 0.393537 CCCATCCACCAAGAGTCTGC 60.394 60.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.691362 TTATTTCTTCTTTTTAGTGCCATGAAC 57.309 29.630 0.00 0.00 0.00 3.18
50 51 6.707440 TTCTTCTTTTTAGTGCCATGAACA 57.293 33.333 0.00 0.00 0.00 3.18
51 52 6.707440 TCTTCTTTTTAGTGCCATGAACAA 57.293 33.333 0.00 0.00 0.00 2.83
52 53 7.288810 TCTTCTTTTTAGTGCCATGAACAAT 57.711 32.000 0.00 0.00 0.00 2.71
53 54 8.402798 TCTTCTTTTTAGTGCCATGAACAATA 57.597 30.769 0.00 0.00 0.00 1.90
54 55 8.514594 TCTTCTTTTTAGTGCCATGAACAATAG 58.485 33.333 0.00 0.00 0.00 1.73
55 56 7.994425 TCTTTTTAGTGCCATGAACAATAGA 57.006 32.000 0.00 0.00 0.00 1.98
56 57 8.044060 TCTTTTTAGTGCCATGAACAATAGAG 57.956 34.615 0.00 0.00 0.00 2.43
57 58 6.757897 TTTTAGTGCCATGAACAATAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
58 59 5.692115 TTAGTGCCATGAACAATAGAGGA 57.308 39.130 0.00 0.00 0.00 3.71
59 60 4.785346 AGTGCCATGAACAATAGAGGAT 57.215 40.909 0.00 0.00 0.00 3.24
60 61 5.894298 AGTGCCATGAACAATAGAGGATA 57.106 39.130 0.00 0.00 0.00 2.59
61 62 5.615289 AGTGCCATGAACAATAGAGGATAC 58.385 41.667 0.00 0.00 0.00 2.24
62 63 5.130975 AGTGCCATGAACAATAGAGGATACA 59.869 40.000 0.00 0.00 41.41 2.29
63 64 5.237344 GTGCCATGAACAATAGAGGATACAC 59.763 44.000 0.00 0.00 41.41 2.90
64 65 5.104569 TGCCATGAACAATAGAGGATACACA 60.105 40.000 0.00 0.00 41.41 3.72
65 66 5.822519 GCCATGAACAATAGAGGATACACAA 59.177 40.000 0.00 0.00 41.41 3.33
66 67 6.238484 GCCATGAACAATAGAGGATACACAAC 60.238 42.308 0.00 0.00 41.41 3.32
67 68 6.260936 CCATGAACAATAGAGGATACACAACC 59.739 42.308 0.00 0.00 41.41 3.77
68 69 5.416083 TGAACAATAGAGGATACACAACCG 58.584 41.667 0.00 0.00 41.41 4.44
69 70 3.793559 ACAATAGAGGATACACAACCGC 58.206 45.455 0.00 0.00 41.41 5.68
70 71 3.131396 CAATAGAGGATACACAACCGCC 58.869 50.000 0.00 0.00 41.41 6.13
71 72 2.154567 TAGAGGATACACAACCGCCT 57.845 50.000 0.00 0.00 41.41 5.52
72 73 0.824759 AGAGGATACACAACCGCCTC 59.175 55.000 0.00 0.00 44.24 4.70
73 74 0.179081 GAGGATACACAACCGCCTCC 60.179 60.000 0.00 0.00 39.33 4.30
74 75 0.617820 AGGATACACAACCGCCTCCT 60.618 55.000 0.00 0.00 41.41 3.69
75 76 0.179081 GGATACACAACCGCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
76 77 0.824759 GATACACAACCGCCTCCTCT 59.175 55.000 0.00 0.00 0.00 3.69
77 78 0.824759 ATACACAACCGCCTCCTCTC 59.175 55.000 0.00 0.00 0.00 3.20
78 79 1.255667 TACACAACCGCCTCCTCTCC 61.256 60.000 0.00 0.00 0.00 3.71
79 80 2.203788 ACAACCGCCTCCTCTCCA 60.204 61.111 0.00 0.00 0.00 3.86
80 81 1.841556 ACAACCGCCTCCTCTCCAA 60.842 57.895 0.00 0.00 0.00 3.53
81 82 1.374947 CAACCGCCTCCTCTCCAAA 59.625 57.895 0.00 0.00 0.00 3.28
82 83 0.674895 CAACCGCCTCCTCTCCAAAG 60.675 60.000 0.00 0.00 0.00 2.77
83 84 0.836400 AACCGCCTCCTCTCCAAAGA 60.836 55.000 0.00 0.00 0.00 2.52
84 85 0.836400 ACCGCCTCCTCTCCAAAGAA 60.836 55.000 0.00 0.00 0.00 2.52
85 86 0.324943 CCGCCTCCTCTCCAAAGAAA 59.675 55.000 0.00 0.00 0.00 2.52
86 87 1.677217 CCGCCTCCTCTCCAAAGAAAG 60.677 57.143 0.00 0.00 0.00 2.62
93 94 5.190726 CCTCCTCTCCAAAGAAAGATTAGGT 59.809 44.000 0.00 0.00 0.00 3.08
99 100 7.526918 TCTCCAAAGAAAGATTAGGTTTCCTT 58.473 34.615 0.00 0.00 34.93 3.36
109 110 1.228459 GGTTTCCTTTGCCTCCCGT 60.228 57.895 0.00 0.00 0.00 5.28
118 119 3.537874 GCCTCCCGTCGGTGCTAT 61.538 66.667 11.06 0.00 0.00 2.97
120 121 2.331805 CTCCCGTCGGTGCTATCG 59.668 66.667 11.06 0.00 0.00 2.92
121 122 3.825833 CTCCCGTCGGTGCTATCGC 62.826 68.421 11.06 0.00 0.00 4.58
132 133 2.981909 CTATCGCCGGTCCGCCTA 60.982 66.667 5.50 0.00 0.00 3.93
140 141 2.753043 GGTCCGCCTAGTGTCCGA 60.753 66.667 0.00 0.00 0.00 4.55
144 145 2.125326 CCGCCTAGTGTCCGATGGA 61.125 63.158 0.00 0.00 0.00 3.41
173 174 2.687566 GGGGACACGGTGGATCCT 60.688 66.667 14.23 0.00 32.70 3.24
174 175 1.382146 GGGGACACGGTGGATCCTA 60.382 63.158 14.23 0.00 32.70 2.94
175 176 1.683418 GGGGACACGGTGGATCCTAC 61.683 65.000 14.23 9.39 32.70 3.18
181 182 0.638292 ACGGTGGATCCTACCCCTTA 59.362 55.000 20.96 0.00 34.66 2.69
189 190 1.002017 CCTACCCCTTACCGGTGGA 59.998 63.158 19.93 4.64 33.89 4.02
197 198 1.229400 TTACCGGTGGAAGGGCTCT 60.229 57.895 19.93 0.00 0.00 4.09
198 199 0.838987 TTACCGGTGGAAGGGCTCTT 60.839 55.000 19.93 0.00 35.62 2.85
199 200 1.262640 TACCGGTGGAAGGGCTCTTC 61.263 60.000 18.60 18.60 46.47 2.87
214 227 4.687483 GGGCTCTTCATTGATGTTTTGTTG 59.313 41.667 0.08 0.00 0.00 3.33
266 279 2.130426 GGCGGCTCTCTGGAGATGA 61.130 63.158 0.00 0.00 41.86 2.92
273 286 4.038522 CGGCTCTCTGGAGATGAAATAAGA 59.961 45.833 0.48 0.00 41.86 2.10
321 336 4.112341 GCGTCTAGCCGTCGGTGT 62.112 66.667 13.94 3.19 40.81 4.16
332 347 1.143183 GTCGGTGTGTGTGTGGAGT 59.857 57.895 0.00 0.00 0.00 3.85
334 349 1.112950 TCGGTGTGTGTGTGGAGTTA 58.887 50.000 0.00 0.00 0.00 2.24
340 355 4.127171 GTGTGTGTGTGGAGTTATGTCTT 58.873 43.478 0.00 0.00 0.00 3.01
369 384 4.142609 TCTATCTGTGGTGGATTTGCTC 57.857 45.455 0.00 0.00 0.00 4.26
371 386 0.684535 TCTGTGGTGGATTTGCTCGA 59.315 50.000 0.00 0.00 0.00 4.04
379 394 2.749621 GTGGATTTGCTCGAATCTGGTT 59.250 45.455 9.11 0.00 36.50 3.67
386 401 1.798813 GCTCGAATCTGGTTGTCGTTT 59.201 47.619 0.00 0.00 36.21 3.60
389 404 2.542178 TCGAATCTGGTTGTCGTTTGTG 59.458 45.455 0.00 0.00 36.21 3.33
396 411 4.636648 TCTGGTTGTCGTTTGTGTATGTTT 59.363 37.500 0.00 0.00 0.00 2.83
403 418 4.494056 GTCGTTTGTGTATGTTTGTGTGTG 59.506 41.667 0.00 0.00 0.00 3.82
408 423 5.228579 TGTGTATGTTTGTGTGTGTTCAG 57.771 39.130 0.00 0.00 0.00 3.02
413 428 3.149981 TGTTTGTGTGTGTTCAGGTTGA 58.850 40.909 0.00 0.00 0.00 3.18
417 432 3.884895 TGTGTGTGTTCAGGTTGAATCT 58.115 40.909 0.00 0.00 38.79 2.40
421 436 5.066505 GTGTGTGTTCAGGTTGAATCTTTCT 59.933 40.000 0.00 0.00 38.79 2.52
422 437 6.260050 GTGTGTGTTCAGGTTGAATCTTTCTA 59.740 38.462 0.00 0.00 38.79 2.10
425 440 8.352942 GTGTGTTCAGGTTGAATCTTTCTAATT 58.647 33.333 0.00 0.00 38.79 1.40
431 446 6.967199 CAGGTTGAATCTTTCTAATTTACGCC 59.033 38.462 0.00 0.00 0.00 5.68
460 475 1.962306 GGCGGCGGTTGTTGTTCTA 60.962 57.895 9.78 0.00 0.00 2.10
463 478 0.511221 CGGCGGTTGTTGTTCTAGTG 59.489 55.000 0.00 0.00 0.00 2.74
464 479 0.237498 GGCGGTTGTTGTTCTAGTGC 59.763 55.000 0.00 0.00 0.00 4.40
484 500 0.843984 GCTGGTCCTATGGGCCTTAA 59.156 55.000 4.53 0.00 32.49 1.85
496 512 1.505425 GGCCTTAACACGACGACTTT 58.495 50.000 0.00 0.00 0.00 2.66
497 513 1.869132 GGCCTTAACACGACGACTTTT 59.131 47.619 0.00 0.00 0.00 2.27
499 515 2.540931 GCCTTAACACGACGACTTTTCA 59.459 45.455 0.00 0.00 0.00 2.69
504 520 1.326548 ACACGACGACTTTTCAACTGC 59.673 47.619 0.00 0.00 0.00 4.40
510 526 4.553323 GACGACTTTTCAACTGCCTACTA 58.447 43.478 0.00 0.00 0.00 1.82
511 527 4.952460 ACGACTTTTCAACTGCCTACTAA 58.048 39.130 0.00 0.00 0.00 2.24
512 528 4.989168 ACGACTTTTCAACTGCCTACTAAG 59.011 41.667 0.00 0.00 0.00 2.18
513 529 4.989168 CGACTTTTCAACTGCCTACTAAGT 59.011 41.667 0.00 0.00 0.00 2.24
514 530 5.465724 CGACTTTTCAACTGCCTACTAAGTT 59.534 40.000 0.00 0.00 37.09 2.66
515 531 6.018180 CGACTTTTCAACTGCCTACTAAGTTT 60.018 38.462 0.00 0.00 34.41 2.66
516 532 7.027778 ACTTTTCAACTGCCTACTAAGTTTG 57.972 36.000 0.00 0.00 34.41 2.93
517 533 5.432885 TTTCAACTGCCTACTAAGTTTGC 57.567 39.130 0.00 0.00 34.41 3.68
518 534 3.064207 TCAACTGCCTACTAAGTTTGCG 58.936 45.455 0.00 0.00 34.41 4.85
519 535 3.064207 CAACTGCCTACTAAGTTTGCGA 58.936 45.455 0.00 0.00 34.41 5.10
520 536 3.611766 ACTGCCTACTAAGTTTGCGAT 57.388 42.857 0.00 0.00 0.00 4.58
521 537 3.262420 ACTGCCTACTAAGTTTGCGATG 58.738 45.455 0.00 0.00 0.00 3.84
522 538 3.056107 ACTGCCTACTAAGTTTGCGATGA 60.056 43.478 0.00 0.00 0.00 2.92
523 539 3.259064 TGCCTACTAAGTTTGCGATGAC 58.741 45.455 0.00 0.00 0.00 3.06
524 540 3.259064 GCCTACTAAGTTTGCGATGACA 58.741 45.455 0.00 0.00 0.00 3.58
525 541 3.307242 GCCTACTAAGTTTGCGATGACAG 59.693 47.826 0.00 0.00 0.00 3.51
526 542 4.495422 CCTACTAAGTTTGCGATGACAGT 58.505 43.478 0.00 0.00 0.00 3.55
527 543 4.327357 CCTACTAAGTTTGCGATGACAGTG 59.673 45.833 0.00 0.00 0.00 3.66
528 544 3.067106 ACTAAGTTTGCGATGACAGTGG 58.933 45.455 0.00 0.00 0.00 4.00
529 545 0.593128 AAGTTTGCGATGACAGTGGC 59.407 50.000 0.00 0.00 0.00 5.01
530 546 0.250467 AGTTTGCGATGACAGTGGCT 60.250 50.000 0.00 0.00 0.00 4.75
531 547 0.166814 GTTTGCGATGACAGTGGCTC 59.833 55.000 0.00 0.00 0.00 4.70
532 548 1.291184 TTTGCGATGACAGTGGCTCG 61.291 55.000 11.94 11.94 0.00 5.03
533 549 2.125912 GCGATGACAGTGGCTCGT 60.126 61.111 15.97 0.00 33.80 4.18
534 550 2.161486 GCGATGACAGTGGCTCGTC 61.161 63.158 15.97 6.36 33.80 4.20
535 551 1.508545 CGATGACAGTGGCTCGTCT 59.491 57.895 0.00 0.99 33.18 4.18
536 552 0.524392 CGATGACAGTGGCTCGTCTC 60.524 60.000 0.00 6.85 33.18 3.36
537 553 0.528017 GATGACAGTGGCTCGTCTCA 59.472 55.000 0.00 0.00 33.18 3.27
538 554 0.529833 ATGACAGTGGCTCGTCTCAG 59.470 55.000 0.00 0.00 33.18 3.35
539 555 1.214062 GACAGTGGCTCGTCTCAGG 59.786 63.158 0.00 0.00 0.00 3.86
540 556 2.125753 CAGTGGCTCGTCTCAGGC 60.126 66.667 0.00 0.00 39.44 4.85
541 557 2.283532 AGTGGCTCGTCTCAGGCT 60.284 61.111 0.00 0.00 39.71 4.58
542 558 2.183046 GTGGCTCGTCTCAGGCTC 59.817 66.667 0.00 0.00 39.71 4.70
543 559 2.283173 TGGCTCGTCTCAGGCTCA 60.283 61.111 0.00 0.00 39.71 4.26
544 560 1.683707 TGGCTCGTCTCAGGCTCAT 60.684 57.895 0.00 0.00 39.71 2.90
545 561 1.260538 TGGCTCGTCTCAGGCTCATT 61.261 55.000 0.00 0.00 39.71 2.57
546 562 0.107945 GGCTCGTCTCAGGCTCATTT 60.108 55.000 0.00 0.00 36.04 2.32
547 563 1.285578 GCTCGTCTCAGGCTCATTTC 58.714 55.000 0.00 0.00 0.00 2.17
548 564 1.404717 GCTCGTCTCAGGCTCATTTCA 60.405 52.381 0.00 0.00 0.00 2.69
549 565 2.538437 CTCGTCTCAGGCTCATTTCAG 58.462 52.381 0.00 0.00 0.00 3.02
550 566 1.895798 TCGTCTCAGGCTCATTTCAGT 59.104 47.619 0.00 0.00 0.00 3.41
551 567 1.998315 CGTCTCAGGCTCATTTCAGTG 59.002 52.381 0.00 0.00 0.00 3.66
552 568 1.736681 GTCTCAGGCTCATTTCAGTGC 59.263 52.381 0.00 0.00 0.00 4.40
553 569 1.627329 TCTCAGGCTCATTTCAGTGCT 59.373 47.619 0.00 0.00 0.00 4.40
554 570 2.039480 TCTCAGGCTCATTTCAGTGCTT 59.961 45.455 0.00 0.00 0.00 3.91
555 571 2.156917 TCAGGCTCATTTCAGTGCTTG 58.843 47.619 0.00 0.00 36.72 4.01
556 572 1.884579 CAGGCTCATTTCAGTGCTTGT 59.115 47.619 0.00 0.00 32.58 3.16
557 573 3.076621 CAGGCTCATTTCAGTGCTTGTA 58.923 45.455 0.00 0.00 32.58 2.41
558 574 3.126514 CAGGCTCATTTCAGTGCTTGTAG 59.873 47.826 0.00 0.00 32.58 2.74
559 575 3.077359 GGCTCATTTCAGTGCTTGTAGT 58.923 45.455 0.00 0.00 0.00 2.73
560 576 3.126000 GGCTCATTTCAGTGCTTGTAGTC 59.874 47.826 0.00 0.00 0.00 2.59
561 577 3.748048 GCTCATTTCAGTGCTTGTAGTCA 59.252 43.478 0.00 0.00 0.00 3.41
562 578 4.394300 GCTCATTTCAGTGCTTGTAGTCAT 59.606 41.667 0.00 0.00 0.00 3.06
563 579 5.447010 GCTCATTTCAGTGCTTGTAGTCATC 60.447 44.000 0.00 0.00 0.00 2.92
564 580 5.798132 TCATTTCAGTGCTTGTAGTCATCT 58.202 37.500 0.00 0.00 0.00 2.90
565 581 5.871524 TCATTTCAGTGCTTGTAGTCATCTC 59.128 40.000 0.00 0.00 0.00 2.75
566 582 5.474578 TTTCAGTGCTTGTAGTCATCTCT 57.525 39.130 0.00 0.00 0.00 3.10
567 583 6.590234 TTTCAGTGCTTGTAGTCATCTCTA 57.410 37.500 0.00 0.00 0.00 2.43
568 584 5.826601 TCAGTGCTTGTAGTCATCTCTAG 57.173 43.478 0.00 0.00 0.00 2.43
569 585 4.642437 TCAGTGCTTGTAGTCATCTCTAGG 59.358 45.833 0.00 0.00 0.00 3.02
570 586 4.400884 CAGTGCTTGTAGTCATCTCTAGGT 59.599 45.833 0.00 0.00 0.00 3.08
571 587 4.400884 AGTGCTTGTAGTCATCTCTAGGTG 59.599 45.833 0.00 0.00 0.00 4.00
572 588 3.701542 TGCTTGTAGTCATCTCTAGGTGG 59.298 47.826 0.00 0.00 0.00 4.61
573 589 3.491792 GCTTGTAGTCATCTCTAGGTGGC 60.492 52.174 0.00 0.00 0.00 5.01
574 590 2.667470 TGTAGTCATCTCTAGGTGGCC 58.333 52.381 0.00 0.00 0.00 5.36
575 591 2.245028 TGTAGTCATCTCTAGGTGGCCT 59.755 50.000 3.32 0.00 37.71 5.19
576 592 3.462205 TGTAGTCATCTCTAGGTGGCCTA 59.538 47.826 3.32 0.00 34.61 3.93
577 593 2.952116 AGTCATCTCTAGGTGGCCTAC 58.048 52.381 3.32 0.00 34.61 3.18
578 594 2.245028 AGTCATCTCTAGGTGGCCTACA 59.755 50.000 3.32 0.00 34.61 2.74
579 595 2.625790 GTCATCTCTAGGTGGCCTACAG 59.374 54.545 3.32 0.00 34.61 2.74
580 596 2.245028 TCATCTCTAGGTGGCCTACAGT 59.755 50.000 3.32 0.00 34.61 3.55
581 597 2.921834 TCTCTAGGTGGCCTACAGTT 57.078 50.000 3.32 0.00 34.61 3.16
582 598 3.185880 TCTCTAGGTGGCCTACAGTTT 57.814 47.619 3.32 0.00 34.61 2.66
583 599 3.517612 TCTCTAGGTGGCCTACAGTTTT 58.482 45.455 3.32 0.00 34.61 2.43
584 600 3.260884 TCTCTAGGTGGCCTACAGTTTTG 59.739 47.826 3.32 0.00 34.61 2.44
585 601 3.244582 TCTAGGTGGCCTACAGTTTTGA 58.755 45.455 3.32 0.00 34.61 2.69
586 602 3.649023 TCTAGGTGGCCTACAGTTTTGAA 59.351 43.478 3.32 0.00 34.61 2.69
587 603 3.525800 AGGTGGCCTACAGTTTTGAAT 57.474 42.857 3.32 0.00 28.47 2.57
588 604 3.157087 AGGTGGCCTACAGTTTTGAATG 58.843 45.455 3.32 0.00 28.47 2.67
589 605 2.890945 GGTGGCCTACAGTTTTGAATGT 59.109 45.455 3.32 0.00 0.00 2.71
590 606 4.076394 GGTGGCCTACAGTTTTGAATGTA 58.924 43.478 3.32 0.00 0.00 2.29
591 607 4.521256 GGTGGCCTACAGTTTTGAATGTAA 59.479 41.667 3.32 0.00 31.81 2.41
592 608 5.010213 GGTGGCCTACAGTTTTGAATGTAAA 59.990 40.000 3.32 0.00 31.81 2.01
593 609 6.295067 GGTGGCCTACAGTTTTGAATGTAAAT 60.295 38.462 3.32 0.00 31.81 1.40
594 610 7.151976 GTGGCCTACAGTTTTGAATGTAAATT 58.848 34.615 3.32 0.00 31.81 1.82
595 611 7.655732 GTGGCCTACAGTTTTGAATGTAAATTT 59.344 33.333 3.32 0.00 31.81 1.82
596 612 8.207545 TGGCCTACAGTTTTGAATGTAAATTTT 58.792 29.630 3.32 0.00 31.81 1.82
597 613 9.699703 GGCCTACAGTTTTGAATGTAAATTTTA 57.300 29.630 0.00 0.00 31.81 1.52
687 703 9.444600 AAAACAGCTTTTCCGAAGTATATAGAA 57.555 29.630 0.00 0.00 0.00 2.10
690 706 8.204836 ACAGCTTTTCCGAAGTATATAGAACAT 58.795 33.333 0.00 0.00 0.00 2.71
713 729 7.384660 ACATTTATTTTCACACATGCGAACATT 59.615 29.630 0.00 0.00 32.87 2.71
714 730 7.706281 TTTATTTTCACACATGCGAACATTT 57.294 28.000 0.00 0.00 32.87 2.32
739 755 7.958674 TGTTTTCTAATTTTGTGAACAACAGC 58.041 30.769 0.00 0.00 40.74 4.40
743 759 8.770438 TTCTAATTTTGTGAACAACAGCTTTT 57.230 26.923 0.00 0.00 40.74 2.27
754 770 9.774742 GTGAACAACAGCTTTTAAATATAGGAG 57.225 33.333 0.00 0.00 0.00 3.69
772 788 9.731819 ATATAGGAGCATTTATTATGACGTACG 57.268 33.333 15.01 15.01 0.00 3.67
775 791 5.688621 GGAGCATTTATTATGACGTACGTGA 59.311 40.000 28.16 19.57 0.00 4.35
776 792 6.199531 GGAGCATTTATTATGACGTACGTGAA 59.800 38.462 28.16 16.72 0.00 3.18
777 793 6.929896 AGCATTTATTATGACGTACGTGAAC 58.070 36.000 28.16 12.34 0.00 3.18
779 795 7.223971 AGCATTTATTATGACGTACGTGAACAT 59.776 33.333 28.16 23.45 0.00 2.71
780 796 7.849026 GCATTTATTATGACGTACGTGAACATT 59.151 33.333 28.16 11.20 0.00 2.71
781 797 9.697250 CATTTATTATGACGTACGTGAACATTT 57.303 29.630 28.16 15.05 0.00 2.32
788 804 7.824100 TGACGTACGTGAACATTTATTTTTG 57.176 32.000 28.16 0.00 0.00 2.44
789 805 6.357503 TGACGTACGTGAACATTTATTTTTGC 59.642 34.615 28.16 5.23 0.00 3.68
790 806 6.200100 ACGTACGTGAACATTTATTTTTGCA 58.800 32.000 22.14 0.00 0.00 4.08
791 807 6.358558 ACGTACGTGAACATTTATTTTTGCAG 59.641 34.615 22.14 0.00 0.00 4.41
792 808 5.574815 ACGTGAACATTTATTTTTGCAGC 57.425 34.783 0.00 0.00 0.00 5.25
793 809 5.288804 ACGTGAACATTTATTTTTGCAGCT 58.711 33.333 0.00 0.00 0.00 4.24
794 810 6.442952 ACGTGAACATTTATTTTTGCAGCTA 58.557 32.000 0.00 0.00 0.00 3.32
795 811 7.090173 ACGTGAACATTTATTTTTGCAGCTAT 58.910 30.769 0.00 0.00 0.00 2.97
796 812 8.240682 ACGTGAACATTTATTTTTGCAGCTATA 58.759 29.630 0.00 0.00 0.00 1.31
797 813 9.071221 CGTGAACATTTATTTTTGCAGCTATAA 57.929 29.630 0.00 0.00 0.00 0.98
933 970 4.806342 TGAAGAACTGTTTTACGAAGCC 57.194 40.909 0.00 0.00 0.00 4.35
972 1013 1.811266 ACACTGCTATTCGCGCCAG 60.811 57.895 0.00 4.48 43.27 4.85
977 1018 2.649257 GCTATTCGCGCCAGCTACG 61.649 63.158 16.05 4.04 42.32 3.51
1059 1101 2.582978 GACTCCCGGCCTACCAAC 59.417 66.667 0.00 0.00 34.57 3.77
1290 1332 1.544825 CCTTCCTGGAGTTGAGGCGA 61.545 60.000 0.00 0.00 38.35 5.54
1291 1333 0.539051 CTTCCTGGAGTTGAGGCGAT 59.461 55.000 0.00 0.00 0.00 4.58
1294 1336 1.078918 CTGGAGTTGAGGCGATGCA 60.079 57.895 0.00 0.00 0.00 3.96
1335 1377 1.734477 CTTCTCCACCGTGCTGTCG 60.734 63.158 0.00 0.00 0.00 4.35
1431 1473 4.980805 GTGTTCGTGGGCGCCTCA 62.981 66.667 28.56 19.91 38.14 3.86
1451 1493 1.134699 ACTCGTCACCATGTATGCCAG 60.135 52.381 0.00 0.00 0.00 4.85
1466 1508 2.644992 CAGCTGTGGGGTTTTCGC 59.355 61.111 5.25 0.00 0.00 4.70
1490 1532 3.423154 GCAGCGGGTCTTTGACGG 61.423 66.667 0.00 0.00 32.65 4.79
1491 1533 2.030562 CAGCGGGTCTTTGACGGT 59.969 61.111 0.00 0.00 39.05 4.83
1498 1540 1.273455 GGTCTTTGACGGTGTCGACG 61.273 60.000 11.62 1.15 40.11 5.12
1571 1613 4.530857 GGTAGCAGACGCCCGCAT 62.531 66.667 0.00 0.00 39.83 4.73
1626 1668 0.322997 CCTGGACGGCCATGGTAAAA 60.323 55.000 12.52 0.00 44.91 1.52
1676 1718 3.754965 TGGCATTAGAGCTGTTTGACTT 58.245 40.909 0.00 0.00 34.17 3.01
1684 1726 0.961019 GCTGTTTGACTTGATGCCCA 59.039 50.000 0.00 0.00 0.00 5.36
1713 1755 1.139989 CTGTGTCGTGGTGTGTCATC 58.860 55.000 0.00 0.00 0.00 2.92
1739 1781 1.303561 GGCTTGTCCACCATCAGCA 60.304 57.895 0.00 0.00 34.01 4.41
1753 1795 2.865119 TCAGCAATTCAGAGAGGCAA 57.135 45.000 0.00 0.00 0.00 4.52
1777 1819 6.522625 TTGAACTGTTCAAAGGTTTGATGA 57.477 33.333 28.30 6.31 45.94 2.92
1788 1830 2.861317 AGGTTTGATGAGGAATGGGGAT 59.139 45.455 0.00 0.00 0.00 3.85
1792 1834 3.870538 TGATGAGGAATGGGGATGAAG 57.129 47.619 0.00 0.00 0.00 3.02
1794 1836 3.137176 TGATGAGGAATGGGGATGAAGTC 59.863 47.826 0.00 0.00 0.00 3.01
1803 1845 1.133025 GGGGATGAAGTCACAAATGCG 59.867 52.381 0.00 0.00 29.12 4.73
1827 1869 5.705905 GGTTCTAGTTAAGGTTGTGAATGCT 59.294 40.000 0.00 0.00 0.00 3.79
1836 1878 2.533266 GTTGTGAATGCTTATGCTGGC 58.467 47.619 1.96 0.00 40.48 4.85
1857 1899 3.282885 CCTGAAAAGTATTGGAGGAGGC 58.717 50.000 0.00 0.00 0.00 4.70
1980 2163 6.680810 TGAAGCACAATTGGAGTTTGATAAG 58.319 36.000 10.83 0.00 0.00 1.73
2346 2530 2.827921 GGATGATGCACTGGACCTTTTT 59.172 45.455 0.00 0.00 0.00 1.94
2356 2540 4.096984 CACTGGACCTTTTTCATAGGATGC 59.903 45.833 0.00 0.00 36.58 3.91
2360 2544 4.646492 GGACCTTTTTCATAGGATGCACAT 59.354 41.667 0.00 0.00 36.58 3.21
2361 2545 5.450965 GGACCTTTTTCATAGGATGCACATG 60.451 44.000 0.00 0.00 36.58 3.21
2379 2563 4.449068 CACATGAGGACTGTTGTCACTTAC 59.551 45.833 0.00 0.00 44.61 2.34
2412 2596 4.104383 AGCTGGTTTTCTTCATCAAGGA 57.896 40.909 0.00 0.00 0.00 3.36
2487 2671 5.705905 AGTGACTTGGAGCTGTTTAATTACC 59.294 40.000 0.00 0.00 0.00 2.85
2587 2771 3.057174 CGAGTCAGTTGTTTCTAGCCTCT 60.057 47.826 0.00 0.00 0.00 3.69
2903 3087 3.592898 TGGTGTACTGTCTGCATGTAG 57.407 47.619 4.14 4.14 0.00 2.74
2941 3125 4.648762 TGGAGGAAGCAAAACATTTCTTCA 59.351 37.500 0.00 0.00 37.31 3.02
2952 3136 5.375417 AACATTTCTTCAATGCGATGACA 57.625 34.783 0.00 0.00 45.74 3.58
3048 3232 1.208293 GAGGAGGCTGAAGGGTTAGTG 59.792 57.143 0.00 0.00 0.00 2.74
3102 3286 1.203112 TGGACCTCTCTCTTGAGCAGT 60.203 52.381 0.00 0.00 40.03 4.40
3109 3293 2.067766 CTCTCTTGAGCAGTTGCAGAC 58.932 52.381 6.90 0.00 45.16 3.51
3147 3331 4.849329 GCAGAGCATGCGGCAAGC 62.849 66.667 21.43 21.43 46.99 4.01
3229 3413 5.985175 TGGATCAACAAATAGATGGGGTA 57.015 39.130 0.00 0.00 0.00 3.69
3244 3428 4.623932 TGGGGTATGATTGATAGTCTGC 57.376 45.455 0.00 0.00 0.00 4.26
3271 3455 4.393371 GTCAAATTAGGAGAACTGCCACTC 59.607 45.833 0.00 0.00 0.00 3.51
3444 3628 7.530010 CCCGTGATCATTTATATGGACATTTC 58.470 38.462 0.00 0.00 32.40 2.17
3569 3755 9.778993 GTTTACACATCTTATGTAGAACGTCTA 57.221 33.333 0.00 0.00 42.70 2.59
3580 3768 5.535333 TGTAGAACGTCTAAAAGTTCAGGG 58.465 41.667 10.37 0.00 46.54 4.45
3670 4048 6.859420 TCGCATGCTTGTACATATAATGTT 57.141 33.333 17.13 0.00 41.63 2.71
3673 4051 6.912051 CGCATGCTTGTACATATAATGTTTGT 59.088 34.615 17.13 0.00 41.63 2.83
3783 4165 8.814038 AAAAGCACCTTGAAATACTATCTCAT 57.186 30.769 0.00 0.00 0.00 2.90
3787 4169 7.714377 AGCACCTTGAAATACTATCTCATCTTG 59.286 37.037 0.00 0.00 0.00 3.02
3831 4214 2.677914 TGTCCTCCAGAGTTTCAGTGA 58.322 47.619 0.00 0.00 0.00 3.41
3833 4216 3.259374 TGTCCTCCAGAGTTTCAGTGATC 59.741 47.826 0.00 0.00 0.00 2.92
3836 4219 2.232452 CTCCAGAGTTTCAGTGATCGGT 59.768 50.000 0.00 0.00 0.00 4.69
3845 4228 4.545823 TTCAGTGATCGGTTTGTTGTTC 57.454 40.909 0.00 0.00 0.00 3.18
3880 4266 0.665298 GGCGCCAAATTTTGCCAAAA 59.335 45.000 24.80 4.87 46.76 2.44
3895 4281 5.096443 TGCCAAAACAGAAACCTTTCAAT 57.904 34.783 0.78 0.00 39.61 2.57
3900 4286 4.590850 AACAGAAACCTTTCAATCAGCC 57.409 40.909 0.78 0.00 39.61 4.85
3931 4317 0.615331 TGGTCAGCAGAGGATGGAAC 59.385 55.000 0.00 0.00 0.00 3.62
3955 4341 2.334946 GCGCAGGCCAAAGACATGA 61.335 57.895 5.01 0.00 0.00 3.07
4031 4418 2.235898 TGCAAAAATACCCAGCCAATCC 59.764 45.455 0.00 0.00 0.00 3.01
4211 4615 2.671070 CAGGGAAGTCCATGCCGT 59.329 61.111 0.00 0.00 41.16 5.68
4212 4616 1.746615 CAGGGAAGTCCATGCCGTG 60.747 63.158 0.00 0.00 41.16 4.94
4289 4696 1.945354 TTACGGGAAGCTGGCTCTCG 61.945 60.000 4.62 4.62 0.00 4.04
4295 4702 0.459411 GAAGCTGGCTCTCGACCTTC 60.459 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.691362 GTTCATGGCACTAAAAAGAAGAAATAA 57.309 29.630 0.00 0.00 0.00 1.40
24 25 8.855110 TGTTCATGGCACTAAAAAGAAGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
25 26 7.725251 TGTTCATGGCACTAAAAAGAAGAAAT 58.275 30.769 0.00 0.00 0.00 2.17
26 27 7.106439 TGTTCATGGCACTAAAAAGAAGAAA 57.894 32.000 0.00 0.00 0.00 2.52
27 28 6.707440 TGTTCATGGCACTAAAAAGAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
28 29 6.707440 TTGTTCATGGCACTAAAAAGAAGA 57.293 33.333 0.00 0.00 0.00 2.87
29 30 8.514594 TCTATTGTTCATGGCACTAAAAAGAAG 58.485 33.333 0.00 0.00 0.00 2.85
30 31 8.402798 TCTATTGTTCATGGCACTAAAAAGAA 57.597 30.769 0.00 0.00 0.00 2.52
31 32 7.121168 CCTCTATTGTTCATGGCACTAAAAAGA 59.879 37.037 0.00 0.00 0.00 2.52
32 33 7.121168 TCCTCTATTGTTCATGGCACTAAAAAG 59.879 37.037 0.00 0.00 0.00 2.27
33 34 6.945435 TCCTCTATTGTTCATGGCACTAAAAA 59.055 34.615 0.00 0.00 0.00 1.94
34 35 6.480763 TCCTCTATTGTTCATGGCACTAAAA 58.519 36.000 0.00 0.00 0.00 1.52
35 36 6.061022 TCCTCTATTGTTCATGGCACTAAA 57.939 37.500 0.00 0.00 0.00 1.85
36 37 5.692115 TCCTCTATTGTTCATGGCACTAA 57.308 39.130 0.00 0.00 0.00 2.24
37 38 5.894298 ATCCTCTATTGTTCATGGCACTA 57.106 39.130 0.00 0.00 0.00 2.74
38 39 4.785346 ATCCTCTATTGTTCATGGCACT 57.215 40.909 0.00 0.00 0.00 4.40
39 40 5.237344 GTGTATCCTCTATTGTTCATGGCAC 59.763 44.000 0.00 0.00 0.00 5.01
40 41 5.104569 TGTGTATCCTCTATTGTTCATGGCA 60.105 40.000 0.00 0.00 0.00 4.92
41 42 5.368145 TGTGTATCCTCTATTGTTCATGGC 58.632 41.667 0.00 0.00 0.00 4.40
42 43 6.260936 GGTTGTGTATCCTCTATTGTTCATGG 59.739 42.308 0.00 0.00 0.00 3.66
43 44 6.018751 CGGTTGTGTATCCTCTATTGTTCATG 60.019 42.308 0.00 0.00 0.00 3.07
44 45 6.049149 CGGTTGTGTATCCTCTATTGTTCAT 58.951 40.000 0.00 0.00 0.00 2.57
45 46 5.416083 CGGTTGTGTATCCTCTATTGTTCA 58.584 41.667 0.00 0.00 0.00 3.18
46 47 4.270325 GCGGTTGTGTATCCTCTATTGTTC 59.730 45.833 0.00 0.00 0.00 3.18
47 48 4.189231 GCGGTTGTGTATCCTCTATTGTT 58.811 43.478 0.00 0.00 0.00 2.83
48 49 3.431766 GGCGGTTGTGTATCCTCTATTGT 60.432 47.826 0.00 0.00 0.00 2.71
49 50 3.131396 GGCGGTTGTGTATCCTCTATTG 58.869 50.000 0.00 0.00 0.00 1.90
50 51 3.039011 AGGCGGTTGTGTATCCTCTATT 58.961 45.455 0.00 0.00 0.00 1.73
51 52 2.628657 GAGGCGGTTGTGTATCCTCTAT 59.371 50.000 0.00 0.00 40.02 1.98
52 53 2.029623 GAGGCGGTTGTGTATCCTCTA 58.970 52.381 0.00 0.00 40.02 2.43
53 54 0.824759 GAGGCGGTTGTGTATCCTCT 59.175 55.000 0.00 0.00 40.02 3.69
54 55 0.179081 GGAGGCGGTTGTGTATCCTC 60.179 60.000 0.00 0.00 41.87 3.71
55 56 0.617820 AGGAGGCGGTTGTGTATCCT 60.618 55.000 0.00 0.00 32.31 3.24
56 57 0.179081 GAGGAGGCGGTTGTGTATCC 60.179 60.000 0.00 0.00 0.00 2.59
57 58 0.824759 AGAGGAGGCGGTTGTGTATC 59.175 55.000 0.00 0.00 0.00 2.24
58 59 0.824759 GAGAGGAGGCGGTTGTGTAT 59.175 55.000 0.00 0.00 0.00 2.29
59 60 1.255667 GGAGAGGAGGCGGTTGTGTA 61.256 60.000 0.00 0.00 0.00 2.90
60 61 2.584391 GGAGAGGAGGCGGTTGTGT 61.584 63.158 0.00 0.00 0.00 3.72
61 62 2.111999 TTGGAGAGGAGGCGGTTGTG 62.112 60.000 0.00 0.00 0.00 3.33
62 63 1.415672 TTTGGAGAGGAGGCGGTTGT 61.416 55.000 0.00 0.00 0.00 3.32
63 64 0.674895 CTTTGGAGAGGAGGCGGTTG 60.675 60.000 0.00 0.00 0.00 3.77
64 65 0.836400 TCTTTGGAGAGGAGGCGGTT 60.836 55.000 0.00 0.00 0.00 4.44
65 66 0.836400 TTCTTTGGAGAGGAGGCGGT 60.836 55.000 0.00 0.00 32.44 5.68
66 67 0.324943 TTTCTTTGGAGAGGAGGCGG 59.675 55.000 0.00 0.00 32.44 6.13
67 68 1.276421 TCTTTCTTTGGAGAGGAGGCG 59.724 52.381 0.00 0.00 32.44 5.52
68 69 3.643199 ATCTTTCTTTGGAGAGGAGGC 57.357 47.619 0.00 0.00 32.44 4.70
69 70 5.190726 ACCTAATCTTTCTTTGGAGAGGAGG 59.809 44.000 0.00 0.00 32.44 4.30
70 71 6.306643 ACCTAATCTTTCTTTGGAGAGGAG 57.693 41.667 0.00 0.00 32.44 3.69
71 72 6.704056 AACCTAATCTTTCTTTGGAGAGGA 57.296 37.500 0.00 0.00 32.44 3.71
72 73 6.375736 GGAAACCTAATCTTTCTTTGGAGAGG 59.624 42.308 0.00 0.00 32.44 3.69
73 74 7.171653 AGGAAACCTAATCTTTCTTTGGAGAG 58.828 38.462 0.00 0.00 29.05 3.20
74 75 7.091533 AGGAAACCTAATCTTTCTTTGGAGA 57.908 36.000 0.00 0.00 28.47 3.71
75 76 7.767250 AAGGAAACCTAATCTTTCTTTGGAG 57.233 36.000 0.00 0.00 31.13 3.86
76 77 7.471399 GCAAAGGAAACCTAATCTTTCTTTGGA 60.471 37.037 14.37 0.00 32.91 3.53
77 78 6.646653 GCAAAGGAAACCTAATCTTTCTTTGG 59.353 38.462 14.37 2.00 32.91 3.28
78 79 6.646653 GGCAAAGGAAACCTAATCTTTCTTTG 59.353 38.462 10.06 10.06 33.93 2.77
79 80 6.554982 AGGCAAAGGAAACCTAATCTTTCTTT 59.445 34.615 0.00 0.00 31.13 2.52
80 81 6.077993 AGGCAAAGGAAACCTAATCTTTCTT 58.922 36.000 0.00 0.00 31.13 2.52
81 82 5.645201 AGGCAAAGGAAACCTAATCTTTCT 58.355 37.500 0.00 0.00 31.13 2.52
82 83 5.105716 GGAGGCAAAGGAAACCTAATCTTTC 60.106 44.000 0.00 0.00 32.67 2.62
83 84 4.772624 GGAGGCAAAGGAAACCTAATCTTT 59.227 41.667 0.00 0.00 32.67 2.52
84 85 4.344978 GGAGGCAAAGGAAACCTAATCTT 58.655 43.478 0.00 0.00 32.67 2.40
85 86 3.309193 GGGAGGCAAAGGAAACCTAATCT 60.309 47.826 0.00 0.00 32.67 2.40
86 87 3.024547 GGGAGGCAAAGGAAACCTAATC 58.975 50.000 0.00 0.00 32.67 1.75
93 94 1.302192 CGACGGGAGGCAAAGGAAA 60.302 57.895 0.00 0.00 38.29 3.13
121 122 3.834799 GGACACTAGGCGGACCGG 61.835 72.222 17.22 0.00 42.76 5.28
163 164 1.046204 GTAAGGGGTAGGATCCACCG 58.954 60.000 15.82 0.00 44.74 4.94
173 174 0.618393 CCTTCCACCGGTAAGGGGTA 60.618 60.000 23.52 7.86 43.78 3.69
174 175 1.921857 CCTTCCACCGGTAAGGGGT 60.922 63.158 23.52 0.00 43.78 4.95
175 176 2.995547 CCTTCCACCGGTAAGGGG 59.004 66.667 23.52 14.35 46.96 4.79
181 182 2.529389 AAGAGCCCTTCCACCGGT 60.529 61.111 0.00 0.00 0.00 5.28
189 190 4.590222 ACAAAACATCAATGAAGAGCCCTT 59.410 37.500 0.00 0.00 34.81 3.95
197 198 7.012138 CACAAATCCCAACAAAACATCAATGAA 59.988 33.333 0.00 0.00 0.00 2.57
198 199 6.482641 CACAAATCCCAACAAAACATCAATGA 59.517 34.615 0.00 0.00 0.00 2.57
199 200 6.260493 ACACAAATCCCAACAAAACATCAATG 59.740 34.615 0.00 0.00 0.00 2.82
200 201 6.355747 ACACAAATCCCAACAAAACATCAAT 58.644 32.000 0.00 0.00 0.00 2.57
203 204 4.749598 GGACACAAATCCCAACAAAACATC 59.250 41.667 0.00 0.00 31.94 3.06
205 206 3.772025 AGGACACAAATCCCAACAAAACA 59.228 39.130 0.00 0.00 39.91 2.83
260 273 5.704978 GGCAGGGAGAATCTTATTTCATCTC 59.295 44.000 0.00 0.00 36.62 2.75
266 279 4.202514 GGCTAGGCAGGGAGAATCTTATTT 60.203 45.833 12.16 0.00 33.73 1.40
273 286 1.772156 GGGGCTAGGCAGGGAGAAT 60.772 63.158 19.14 0.00 0.00 2.40
295 308 1.227380 GGCTAGACGCACCATCAGG 60.227 63.158 0.00 0.00 41.67 3.86
297 310 2.279502 GACGGCTAGACGCACCATCA 62.280 60.000 20.33 0.00 41.67 3.07
299 312 2.494918 GACGGCTAGACGCACCAT 59.505 61.111 20.33 0.00 41.67 3.55
321 336 3.319689 TCGAAGACATAACTCCACACACA 59.680 43.478 0.00 0.00 0.00 3.72
355 370 2.096496 CAGATTCGAGCAAATCCACCAC 59.904 50.000 3.66 0.00 36.49 4.16
369 384 2.286833 ACACAAACGACAACCAGATTCG 59.713 45.455 0.00 0.00 38.73 3.34
371 386 4.819630 ACATACACAAACGACAACCAGATT 59.180 37.500 0.00 0.00 0.00 2.40
379 394 4.154375 ACACACAAACATACACAAACGACA 59.846 37.500 0.00 0.00 0.00 4.35
386 401 4.095632 CCTGAACACACACAAACATACACA 59.904 41.667 0.00 0.00 0.00 3.72
389 404 4.893424 ACCTGAACACACACAAACATAC 57.107 40.909 0.00 0.00 0.00 2.39
396 411 3.884895 AGATTCAACCTGAACACACACA 58.115 40.909 0.00 0.00 39.45 3.72
403 418 9.543018 CGTAAATTAGAAAGATTCAACCTGAAC 57.457 33.333 0.00 0.00 39.45 3.18
408 423 6.745907 GTGGCGTAAATTAGAAAGATTCAACC 59.254 38.462 0.00 0.00 0.00 3.77
413 428 7.606456 TGAAGAGTGGCGTAAATTAGAAAGATT 59.394 33.333 0.00 0.00 0.00 2.40
417 432 6.035650 CGATGAAGAGTGGCGTAAATTAGAAA 59.964 38.462 0.00 0.00 0.00 2.52
421 436 4.116961 CCGATGAAGAGTGGCGTAAATTA 58.883 43.478 0.00 0.00 0.00 1.40
422 437 2.936498 CCGATGAAGAGTGGCGTAAATT 59.064 45.455 0.00 0.00 0.00 1.82
425 440 0.459585 GCCGATGAAGAGTGGCGTAA 60.460 55.000 0.00 0.00 37.81 3.18
431 446 3.257561 CGCCGCCGATGAAGAGTG 61.258 66.667 0.00 0.00 36.29 3.51
460 475 2.735772 CCCATAGGACCAGCGCACT 61.736 63.158 11.47 1.70 33.47 4.40
463 478 4.937431 GGCCCATAGGACCAGCGC 62.937 72.222 0.00 0.00 33.41 5.92
464 479 1.407656 TAAGGCCCATAGGACCAGCG 61.408 60.000 0.00 0.00 45.91 5.18
484 500 1.326548 GCAGTTGAAAAGTCGTCGTGT 59.673 47.619 0.00 0.00 0.00 4.49
496 512 3.496884 CGCAAACTTAGTAGGCAGTTGAA 59.503 43.478 8.49 0.00 33.38 2.69
497 513 3.064207 CGCAAACTTAGTAGGCAGTTGA 58.936 45.455 8.49 0.00 33.38 3.18
499 515 3.396260 TCGCAAACTTAGTAGGCAGTT 57.604 42.857 8.49 0.00 34.58 3.16
504 520 4.327357 CACTGTCATCGCAAACTTAGTAGG 59.673 45.833 0.00 0.00 0.00 3.18
510 526 0.593128 GCCACTGTCATCGCAAACTT 59.407 50.000 0.00 0.00 0.00 2.66
511 527 0.250467 AGCCACTGTCATCGCAAACT 60.250 50.000 0.00 0.00 0.00 2.66
512 528 0.166814 GAGCCACTGTCATCGCAAAC 59.833 55.000 0.00 0.00 0.00 2.93
513 529 1.291184 CGAGCCACTGTCATCGCAAA 61.291 55.000 0.00 0.00 0.00 3.68
514 530 1.737735 CGAGCCACTGTCATCGCAA 60.738 57.895 0.00 0.00 0.00 4.85
515 531 2.125952 CGAGCCACTGTCATCGCA 60.126 61.111 0.00 0.00 0.00 5.10
516 532 2.125912 ACGAGCCACTGTCATCGC 60.126 61.111 0.00 0.00 38.71 4.58
517 533 0.524392 GAGACGAGCCACTGTCATCG 60.524 60.000 0.00 4.77 40.86 3.84
518 534 0.528017 TGAGACGAGCCACTGTCATC 59.472 55.000 0.00 0.00 37.58 2.92
519 535 0.529833 CTGAGACGAGCCACTGTCAT 59.470 55.000 0.00 0.00 37.58 3.06
520 536 1.527433 CCTGAGACGAGCCACTGTCA 61.527 60.000 0.00 0.00 37.58 3.58
521 537 1.214062 CCTGAGACGAGCCACTGTC 59.786 63.158 0.00 0.00 35.33 3.51
522 538 2.936912 GCCTGAGACGAGCCACTGT 61.937 63.158 0.00 0.00 0.00 3.55
523 539 2.125753 GCCTGAGACGAGCCACTG 60.126 66.667 0.00 0.00 0.00 3.66
524 540 2.283532 AGCCTGAGACGAGCCACT 60.284 61.111 0.00 0.00 0.00 4.00
525 541 1.954362 ATGAGCCTGAGACGAGCCAC 61.954 60.000 0.00 0.00 0.00 5.01
526 542 1.260538 AATGAGCCTGAGACGAGCCA 61.261 55.000 0.00 0.00 0.00 4.75
527 543 0.107945 AAATGAGCCTGAGACGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
528 544 1.285578 GAAATGAGCCTGAGACGAGC 58.714 55.000 0.00 0.00 0.00 5.03
529 545 2.094286 ACTGAAATGAGCCTGAGACGAG 60.094 50.000 0.00 0.00 0.00 4.18
530 546 1.895798 ACTGAAATGAGCCTGAGACGA 59.104 47.619 0.00 0.00 0.00 4.20
531 547 1.998315 CACTGAAATGAGCCTGAGACG 59.002 52.381 0.00 0.00 0.00 4.18
532 548 1.736681 GCACTGAAATGAGCCTGAGAC 59.263 52.381 0.00 0.00 0.00 3.36
533 549 1.627329 AGCACTGAAATGAGCCTGAGA 59.373 47.619 0.00 0.00 0.00 3.27
534 550 2.110901 AGCACTGAAATGAGCCTGAG 57.889 50.000 0.00 0.00 0.00 3.35
535 551 2.156917 CAAGCACTGAAATGAGCCTGA 58.843 47.619 0.00 0.00 0.00 3.86
536 552 1.884579 ACAAGCACTGAAATGAGCCTG 59.115 47.619 0.00 0.00 0.00 4.85
537 553 2.283145 ACAAGCACTGAAATGAGCCT 57.717 45.000 0.00 0.00 0.00 4.58
538 554 3.077359 ACTACAAGCACTGAAATGAGCC 58.923 45.455 0.00 0.00 0.00 4.70
539 555 3.748048 TGACTACAAGCACTGAAATGAGC 59.252 43.478 0.00 0.00 0.00 4.26
540 556 5.873712 AGATGACTACAAGCACTGAAATGAG 59.126 40.000 0.00 0.00 0.00 2.90
541 557 5.798132 AGATGACTACAAGCACTGAAATGA 58.202 37.500 0.00 0.00 0.00 2.57
542 558 5.873712 AGAGATGACTACAAGCACTGAAATG 59.126 40.000 0.00 0.00 0.00 2.32
543 559 6.047511 AGAGATGACTACAAGCACTGAAAT 57.952 37.500 0.00 0.00 0.00 2.17
544 560 5.474578 AGAGATGACTACAAGCACTGAAA 57.525 39.130 0.00 0.00 0.00 2.69
545 561 5.126222 CCTAGAGATGACTACAAGCACTGAA 59.874 44.000 0.00 0.00 0.00 3.02
546 562 4.642437 CCTAGAGATGACTACAAGCACTGA 59.358 45.833 0.00 0.00 0.00 3.41
547 563 4.400884 ACCTAGAGATGACTACAAGCACTG 59.599 45.833 0.00 0.00 0.00 3.66
548 564 4.400884 CACCTAGAGATGACTACAAGCACT 59.599 45.833 0.00 0.00 0.00 4.40
549 565 4.440802 CCACCTAGAGATGACTACAAGCAC 60.441 50.000 0.00 0.00 0.00 4.40
550 566 3.701542 CCACCTAGAGATGACTACAAGCA 59.298 47.826 0.00 0.00 0.00 3.91
551 567 3.491792 GCCACCTAGAGATGACTACAAGC 60.492 52.174 0.00 0.00 0.00 4.01
552 568 3.068873 GGCCACCTAGAGATGACTACAAG 59.931 52.174 0.00 0.00 0.00 3.16
553 569 3.031736 GGCCACCTAGAGATGACTACAA 58.968 50.000 0.00 0.00 0.00 2.41
554 570 2.245028 AGGCCACCTAGAGATGACTACA 59.755 50.000 5.01 0.00 28.47 2.74
555 571 2.952116 AGGCCACCTAGAGATGACTAC 58.048 52.381 5.01 0.00 28.47 2.73
556 572 3.462205 TGTAGGCCACCTAGAGATGACTA 59.538 47.826 5.01 0.00 36.71 2.59
557 573 2.245028 TGTAGGCCACCTAGAGATGACT 59.755 50.000 5.01 0.00 36.71 3.41
558 574 2.625790 CTGTAGGCCACCTAGAGATGAC 59.374 54.545 11.41 0.00 46.53 3.06
559 575 2.245028 ACTGTAGGCCACCTAGAGATGA 59.755 50.000 21.04 0.00 46.53 2.92
560 576 2.672098 ACTGTAGGCCACCTAGAGATG 58.328 52.381 21.04 0.45 46.53 2.90
561 577 3.406512 AACTGTAGGCCACCTAGAGAT 57.593 47.619 21.04 9.30 46.53 2.75
562 578 2.921834 AACTGTAGGCCACCTAGAGA 57.078 50.000 21.04 0.00 46.53 3.10
564 580 3.244582 TCAAAACTGTAGGCCACCTAGA 58.755 45.455 5.01 0.00 36.71 2.43
565 581 3.695830 TCAAAACTGTAGGCCACCTAG 57.304 47.619 5.01 0.00 36.71 3.02
566 582 4.202524 ACATTCAAAACTGTAGGCCACCTA 60.203 41.667 5.01 0.00 34.61 3.08
567 583 3.157087 CATTCAAAACTGTAGGCCACCT 58.843 45.455 5.01 0.00 37.71 4.00
568 584 2.890945 ACATTCAAAACTGTAGGCCACC 59.109 45.455 5.01 0.00 0.00 4.61
569 585 5.699097 TTACATTCAAAACTGTAGGCCAC 57.301 39.130 5.01 1.31 0.00 5.01
570 586 6.909550 ATTTACATTCAAAACTGTAGGCCA 57.090 33.333 5.01 0.00 0.00 5.36
571 587 8.601845 AAAATTTACATTCAAAACTGTAGGCC 57.398 30.769 0.00 0.00 0.00 5.19
660 676 9.444600 TCTATATACTTCGGAAAAGCTGTTTTT 57.555 29.630 1.70 1.70 41.59 1.94
661 677 9.444600 TTCTATATACTTCGGAAAAGCTGTTTT 57.555 29.630 0.00 0.00 38.65 2.43
662 678 8.880750 GTTCTATATACTTCGGAAAAGCTGTTT 58.119 33.333 0.00 0.00 0.00 2.83
663 679 8.038944 TGTTCTATATACTTCGGAAAAGCTGTT 58.961 33.333 0.00 0.00 0.00 3.16
664 680 7.553334 TGTTCTATATACTTCGGAAAAGCTGT 58.447 34.615 0.00 0.00 0.00 4.40
665 681 8.594881 ATGTTCTATATACTTCGGAAAAGCTG 57.405 34.615 0.00 0.00 0.00 4.24
666 682 9.614792 AAATGTTCTATATACTTCGGAAAAGCT 57.385 29.630 0.00 0.00 0.00 3.74
687 703 6.212235 TGTTCGCATGTGTGAAAATAAATGT 58.788 32.000 10.27 0.00 44.87 2.71
690 706 7.562412 CAAATGTTCGCATGTGTGAAAATAAA 58.438 30.769 11.28 0.00 44.87 1.40
693 709 5.579384 CAAATGTTCGCATGTGTGAAAAT 57.421 34.783 10.27 8.15 44.87 1.82
713 729 8.439286 GCTGTTGTTCACAAAATTAGAAAACAA 58.561 29.630 0.00 0.00 37.63 2.83
714 730 7.816995 AGCTGTTGTTCACAAAATTAGAAAACA 59.183 29.630 0.00 0.00 37.63 2.83
732 748 7.938140 TGCTCCTATATTTAAAAGCTGTTGT 57.062 32.000 0.00 0.00 0.00 3.32
754 770 6.698107 TGTTCACGTACGTCATAATAAATGC 58.302 36.000 19.94 1.57 0.00 3.56
765 781 6.357503 TGCAAAAATAAATGTTCACGTACGTC 59.642 34.615 19.94 8.38 0.00 4.34
766 782 6.200100 TGCAAAAATAAATGTTCACGTACGT 58.800 32.000 16.72 16.72 0.00 3.57
768 784 6.362283 AGCTGCAAAAATAAATGTTCACGTAC 59.638 34.615 1.02 0.00 0.00 3.67
771 787 5.827568 AGCTGCAAAAATAAATGTTCACG 57.172 34.783 1.02 0.00 0.00 4.35
867 902 8.308207 GCCCACCAACAAGTAATATCTTTAAAA 58.692 33.333 0.00 0.00 0.00 1.52
868 903 7.093684 GGCCCACCAACAAGTAATATCTTTAAA 60.094 37.037 0.00 0.00 35.26 1.52
869 904 6.378848 GGCCCACCAACAAGTAATATCTTTAA 59.621 38.462 0.00 0.00 35.26 1.52
870 905 5.889289 GGCCCACCAACAAGTAATATCTTTA 59.111 40.000 0.00 0.00 35.26 1.85
874 910 2.616842 CGGCCCACCAACAAGTAATATC 59.383 50.000 0.00 0.00 34.57 1.63
901 937 2.439507 ACAGTTCTTCATGGACCACACT 59.560 45.455 0.00 0.00 0.00 3.55
908 945 5.049680 GCTTCGTAAAACAGTTCTTCATGGA 60.050 40.000 0.00 0.00 0.00 3.41
977 1018 3.941657 AAGAACTCCTGCGGCGCTC 62.942 63.158 33.26 20.32 0.00 5.03
986 1027 0.322975 ACGCATGCTGAAGAACTCCT 59.677 50.000 17.13 0.00 0.00 3.69
1054 1096 4.681978 GTCCGCCAGCGAGTTGGT 62.682 66.667 14.67 0.00 42.83 3.67
1203 1245 1.415672 GGGAGTTCCAGGACACCACA 61.416 60.000 0.00 0.00 37.91 4.17
1410 1452 2.126888 GCGCCCACGAACACATTG 60.127 61.111 0.00 0.00 43.93 2.82
1431 1473 0.901827 TGGCATACATGGTGACGAGT 59.098 50.000 0.00 0.00 0.00 4.18
1451 1493 2.597510 AGGCGAAAACCCCACAGC 60.598 61.111 0.00 0.00 0.00 4.40
1467 1509 4.711949 AAGACCCGCTGCAGGCAG 62.712 66.667 17.12 16.68 46.15 4.85
1479 1521 1.273455 CGTCGACACCGTCAAAGACC 61.273 60.000 17.16 0.00 37.05 3.85
1490 1532 0.163788 CACATTTGGAGCGTCGACAC 59.836 55.000 17.16 5.80 0.00 3.67
1491 1533 2.527671 CACATTTGGAGCGTCGACA 58.472 52.632 17.16 0.00 0.00 4.35
1571 1613 1.750193 GGGCATCTGATCGAAAACCA 58.250 50.000 0.00 0.00 0.00 3.67
1626 1668 0.459585 CGTGCACCGTAACATAGCCT 60.460 55.000 12.15 0.00 0.00 4.58
1653 1695 2.421424 GTCAAACAGCTCTAATGCCAGG 59.579 50.000 0.00 0.00 0.00 4.45
1659 1701 4.397417 GGCATCAAGTCAAACAGCTCTAAT 59.603 41.667 0.00 0.00 0.00 1.73
1662 1704 2.157738 GGCATCAAGTCAAACAGCTCT 58.842 47.619 0.00 0.00 0.00 4.09
1676 1718 3.697542 CACAGAATTCTTCATGGGCATCA 59.302 43.478 4.86 0.00 0.00 3.07
1684 1726 3.748048 CACCACGACACAGAATTCTTCAT 59.252 43.478 4.86 0.00 0.00 2.57
1713 1755 0.181350 GGTGGACAAGCCCTCCTATG 59.819 60.000 0.00 0.00 37.01 2.23
1739 1781 5.075493 ACAGTTCAATTGCCTCTCTGAATT 58.925 37.500 0.00 0.00 30.96 2.17
1766 1808 2.654385 TCCCCATTCCTCATCAAACCTT 59.346 45.455 0.00 0.00 0.00 3.50
1768 1810 2.826674 TCCCCATTCCTCATCAAACC 57.173 50.000 0.00 0.00 0.00 3.27
1770 1812 4.017222 ACTTCATCCCCATTCCTCATCAAA 60.017 41.667 0.00 0.00 0.00 2.69
1777 1819 2.278245 TGTGACTTCATCCCCATTCCT 58.722 47.619 0.00 0.00 0.00 3.36
1788 1830 2.571212 AGAACCGCATTTGTGACTTCA 58.429 42.857 0.00 0.00 0.00 3.02
1792 1834 5.390567 CCTTAACTAGAACCGCATTTGTGAC 60.391 44.000 0.00 0.00 0.00 3.67
1794 1836 4.454504 ACCTTAACTAGAACCGCATTTGTG 59.545 41.667 0.00 0.00 0.00 3.33
1803 1845 5.705905 AGCATTCACAACCTTAACTAGAACC 59.294 40.000 0.00 0.00 0.00 3.62
1827 1869 4.402155 CCAATACTTTTCAGGCCAGCATAA 59.598 41.667 5.01 0.00 0.00 1.90
1836 1878 3.282885 GCCTCCTCCAATACTTTTCAGG 58.717 50.000 0.00 0.00 0.00 3.86
1857 1899 4.081862 ACAGAAAACCCATGAATGCATCTG 60.082 41.667 0.00 1.50 30.68 2.90
1980 2163 1.197721 CCGACATGCTTTCTGTCCAAC 59.802 52.381 0.00 0.00 39.89 3.77
2346 2530 3.070590 CAGTCCTCATGTGCATCCTATGA 59.929 47.826 0.00 0.00 0.00 2.15
2356 2540 3.117491 AGTGACAACAGTCCTCATGTG 57.883 47.619 0.00 0.00 0.00 3.21
2360 2544 4.746535 TTGTAAGTGACAACAGTCCTCA 57.253 40.909 0.00 0.00 43.30 3.86
2379 2563 8.461222 TGAAGAAAACCAGCTATCATTACATTG 58.539 33.333 0.00 0.00 0.00 2.82
2385 2569 7.147949 CCTTGATGAAGAAAACCAGCTATCATT 60.148 37.037 0.00 0.00 0.00 2.57
2412 2596 4.072839 GCCTGTAAGCTTCAGTAACCTTT 58.927 43.478 18.48 0.00 0.00 3.11
2466 2650 4.094442 CCGGTAATTAAACAGCTCCAAGTC 59.906 45.833 0.00 0.00 0.00 3.01
2487 2671 1.586154 AACCATTTTGAGCGAGCCCG 61.586 55.000 0.00 0.00 39.16 6.13
2903 3087 4.008074 TCCTCCAAAAGACTCATGTGAC 57.992 45.455 0.94 0.00 0.00 3.67
2941 3125 2.008752 TGATCACGTGTCATCGCATT 57.991 45.000 16.51 0.00 0.00 3.56
2952 3136 1.745087 GGCACAATTCCATGATCACGT 59.255 47.619 0.00 0.00 0.00 4.49
3048 3232 4.022068 TCAGGTTCAAATGGCATTGACTTC 60.022 41.667 14.47 4.44 38.95 3.01
3102 3286 1.202794 TCATTGCCACTCAGTCTGCAA 60.203 47.619 12.49 12.49 46.51 4.08
3109 3293 4.877823 TGCTAACTTATCATTGCCACTCAG 59.122 41.667 0.00 0.00 0.00 3.35
3147 3331 4.321452 CCAGGATTTATGGCGATCAATTGG 60.321 45.833 5.42 0.00 0.00 3.16
3150 3334 4.104383 ACCAGGATTTATGGCGATCAAT 57.896 40.909 0.00 0.00 41.87 2.57
3229 3413 5.268118 TGACTTCGCAGACTATCAATCAT 57.732 39.130 0.00 0.00 34.32 2.45
3244 3428 4.093556 GGCAGTTCTCCTAATTTGACTTCG 59.906 45.833 0.00 0.00 0.00 3.79
3271 3455 6.173339 TCCAGCTATAACCAACTTCTTTCTG 58.827 40.000 0.00 0.00 0.00 3.02
3341 3525 3.139077 GTTTTGGTACCAGACTGACCTG 58.861 50.000 15.65 0.00 34.13 4.00
3490 3675 6.759497 AGATGCCAAAGTGAAGGTAATTAC 57.241 37.500 7.09 7.09 0.00 1.89
3494 3679 5.253330 CCTTAGATGCCAAAGTGAAGGTAA 58.747 41.667 0.00 0.00 0.00 2.85
3569 3755 3.217626 CAAGAGTCTGCCCTGAACTTTT 58.782 45.455 0.00 0.00 0.00 2.27
3580 3768 0.393537 CCCATCCACCAAGAGTCTGC 60.394 60.000 0.00 0.00 0.00 4.26
3670 4048 9.256228 AGTTAGTCTACCTCTAAATGATGACAA 57.744 33.333 0.00 0.00 0.00 3.18
3673 4051 8.687242 CACAGTTAGTCTACCTCTAAATGATGA 58.313 37.037 16.16 0.00 42.32 2.92
3783 4165 9.897744 GACATGAATTCTTGTTAACAATCAAGA 57.102 29.630 23.35 12.02 45.15 3.02
3804 4187 3.692257 AACTCTGGAGGACAAGACATG 57.308 47.619 2.58 0.00 0.00 3.21
3813 4196 2.493675 CGATCACTGAAACTCTGGAGGA 59.506 50.000 2.58 0.00 0.00 3.71
3831 4214 3.146847 GGAAGAGGAACAACAAACCGAT 58.853 45.455 0.00 0.00 0.00 4.18
3833 4216 2.290641 CTGGAAGAGGAACAACAAACCG 59.709 50.000 0.00 0.00 34.07 4.44
3845 4228 0.811616 CGCCGAATTCCTGGAAGAGG 60.812 60.000 15.34 16.87 44.45 3.69
3859 4245 2.048690 GGCAAAATTTGGCGCCGA 60.049 55.556 23.90 19.26 46.51 5.54
3880 4266 3.837355 AGGCTGATTGAAAGGTTTCTGT 58.163 40.909 4.19 0.00 38.02 3.41
3895 4281 5.734720 CTGACCAAACTCTTATTAGGCTGA 58.265 41.667 0.00 0.00 0.00 4.26
3900 4286 5.814705 CCTCTGCTGACCAAACTCTTATTAG 59.185 44.000 0.00 0.00 0.00 1.73
3946 4332 4.229123 AGGGATGGAACTGATCATGTCTTT 59.771 41.667 0.00 0.00 0.00 2.52
3955 4341 3.294214 GAAATGCAGGGATGGAACTGAT 58.706 45.455 0.00 0.00 36.86 2.90
3981 4367 1.448540 CATCCCACAGTCACCGCTC 60.449 63.158 0.00 0.00 0.00 5.03
4088 4480 3.321968 CCGGACAGTCATCATGATCCTTA 59.678 47.826 4.86 0.00 0.00 2.69
4211 4615 4.069232 CTTCTCCGGTGAGCGCCA 62.069 66.667 2.29 0.00 38.58 5.69
4212 4616 2.962697 GATCTTCTCCGGTGAGCGCC 62.963 65.000 2.29 0.00 38.58 6.53
4263 4670 2.095212 GCCAGCTTCCCGTAAAGAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
4264 4671 1.883926 GCCAGCTTCCCGTAAAGAAAA 59.116 47.619 0.00 0.00 0.00 2.29
4272 4679 3.764466 CGAGAGCCAGCTTCCCGT 61.764 66.667 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.