Multiple sequence alignment - TraesCS7A01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G088400 chr7A 100.000 4168 0 0 1 4168 53522264 53518097 0.000000e+00 7697.0
1 TraesCS7A01G088400 chr7A 88.291 1170 111 12 900 2055 53295270 53294113 0.000000e+00 1378.0
2 TraesCS7A01G088400 chr7A 83.763 776 118 6 3396 4166 612664270 612663498 0.000000e+00 728.0
3 TraesCS7A01G088400 chr7A 79.599 299 47 11 1056 1350 705118362 705118650 7.070000e-48 202.0
4 TraesCS7A01G088400 chr7A 87.006 177 13 6 733 902 53295496 53295323 1.530000e-44 191.0
5 TraesCS7A01G088400 chr7A 80.417 240 22 14 2588 2807 38370234 38370468 4.310000e-35 159.0
6 TraesCS7A01G088400 chr7D 92.595 1796 106 12 274 2055 50642477 50640695 0.000000e+00 2555.0
7 TraesCS7A01G088400 chr7D 88.870 1159 107 13 901 2055 50429005 50427865 0.000000e+00 1406.0
8 TraesCS7A01G088400 chr7D 84.718 746 105 5 3425 4166 349940522 349941262 0.000000e+00 737.0
9 TraesCS7A01G088400 chr7D 93.347 481 14 8 2806 3268 50640699 50640219 0.000000e+00 695.0
10 TraesCS7A01G088400 chr7D 89.610 308 23 4 2806 3104 50427869 50427562 2.350000e-102 383.0
11 TraesCS7A01G088400 chr7D 90.643 171 12 2 733 902 50429220 50429053 1.510000e-54 224.0
12 TraesCS7A01G088400 chr7D 80.083 241 24 10 2588 2808 38515051 38515287 1.550000e-34 158.0
13 TraesCS7A01G088400 chr4A 93.017 1160 64 9 905 2052 665438737 665439891 0.000000e+00 1677.0
14 TraesCS7A01G088400 chr4A 87.952 1162 116 11 901 2055 665318947 665317803 0.000000e+00 1349.0
15 TraesCS7A01G088400 chr4A 91.264 435 29 6 2806 3231 665439890 665440324 6.000000e-163 584.0
16 TraesCS7A01G088400 chr4A 88.500 400 36 6 495 890 665438229 665438622 3.770000e-130 475.0
17 TraesCS7A01G088400 chr4A 87.870 338 31 5 2806 3133 665317807 665317470 5.050000e-104 388.0
18 TraesCS7A01G088400 chr4A 88.304 171 10 6 733 902 665319159 665318998 3.290000e-46 196.0
19 TraesCS7A01G088400 chr4A 84.810 79 7 2 3301 3375 665440327 665440404 1.610000e-09 75.0
20 TraesCS7A01G088400 chrUn 93.891 753 15 14 2055 2805 292579051 292579774 0.000000e+00 1107.0
21 TraesCS7A01G088400 chr3B 92.573 754 21 8 2056 2805 790470496 790471218 0.000000e+00 1050.0
22 TraesCS7A01G088400 chr3B 78.952 1107 168 32 992 2052 126733601 126732514 0.000000e+00 693.0
23 TraesCS7A01G088400 chr3B 80.499 882 148 14 1180 2052 126664369 126663503 0.000000e+00 654.0
24 TraesCS7A01G088400 chr3B 91.617 167 12 1 2 168 503817931 503817767 3.240000e-56 230.0
25 TraesCS7A01G088400 chr3B 91.018 167 13 1 2 168 503805001 503804837 1.510000e-54 224.0
26 TraesCS7A01G088400 chr3B 82.432 222 25 5 997 1208 126664588 126664371 9.200000e-42 182.0
27 TraesCS7A01G088400 chr3B 85.321 109 13 3 2051 2158 556371428 556371322 4.410000e-20 110.0
28 TraesCS7A01G088400 chr3B 95.161 62 2 1 2746 2806 267432250 267432311 3.430000e-16 97.1
29 TraesCS7A01G088400 chr3B 95.082 61 2 1 2746 2805 267430940 267431000 1.230000e-15 95.3
30 TraesCS7A01G088400 chr1A 92.206 757 14 18 2051 2805 310869530 310870243 0.000000e+00 1029.0
31 TraesCS7A01G088400 chr1A 91.333 750 16 18 2056 2805 310868093 310868793 0.000000e+00 979.0
32 TraesCS7A01G088400 chr1A 91.667 48 2 2 3290 3335 12007047 12007000 9.670000e-07 65.8
33 TraesCS7A01G088400 chr5B 85.494 779 105 6 3393 4166 136657913 136657138 0.000000e+00 806.0
34 TraesCS7A01G088400 chr5B 91.071 168 11 3 2 168 262689148 262688984 1.510000e-54 224.0
35 TraesCS7A01G088400 chr5B 86.275 153 16 3 170 317 704274553 704274705 1.200000e-35 161.0
36 TraesCS7A01G088400 chr5B 87.255 102 6 6 2051 2152 697005761 697005667 4.410000e-20 110.0
37 TraesCS7A01G088400 chr1D 85.403 781 101 9 3392 4166 161480702 161479929 0.000000e+00 798.0
38 TraesCS7A01G088400 chr1D 85.219 778 108 6 3393 4166 57592038 57592812 0.000000e+00 793.0
39 TraesCS7A01G088400 chr1D 90.116 172 13 3 2 172 184047338 184047170 1.950000e-53 220.0
40 TraesCS7A01G088400 chr7B 84.724 779 112 6 3393 4166 193411470 193410694 0.000000e+00 773.0
41 TraesCS7A01G088400 chr7B 92.393 539 12 13 2270 2808 1768351 1767842 0.000000e+00 741.0
42 TraesCS7A01G088400 chr7B 87.333 150 8 9 2056 2198 742314986 742315131 1.200000e-35 161.0
43 TraesCS7A01G088400 chr5D 84.615 780 109 8 3393 4166 303943620 303944394 0.000000e+00 765.0
44 TraesCS7A01G088400 chr5D 91.018 167 12 2 2 168 149678369 149678206 5.420000e-54 222.0
45 TraesCS7A01G088400 chr5D 91.018 167 12 3 2 168 240306589 240306752 5.420000e-54 222.0
46 TraesCS7A01G088400 chr3A 88.871 638 34 21 2172 2805 687915980 687916584 0.000000e+00 750.0
47 TraesCS7A01G088400 chr3A 89.689 611 30 18 2199 2805 687914565 687915146 0.000000e+00 749.0
48 TraesCS7A01G088400 chr3A 83.462 780 117 11 3393 4166 537413224 537413997 0.000000e+00 715.0
49 TraesCS7A01G088400 chr3A 81.001 879 143 14 1180 2052 95359459 95358599 0.000000e+00 676.0
50 TraesCS7A01G088400 chr5A 83.801 784 112 12 3393 4166 652380440 652381218 0.000000e+00 730.0
51 TraesCS7A01G088400 chr3D 81.115 879 139 17 1180 2052 81121965 81121108 0.000000e+00 678.0
52 TraesCS7A01G088400 chr3D 78.533 1118 167 43 997 2052 80917496 80916390 0.000000e+00 667.0
53 TraesCS7A01G088400 chr3D 78.011 523 76 18 997 1493 81057714 81057205 4.080000e-75 292.0
54 TraesCS7A01G088400 chr3D 80.364 275 42 5 2836 3098 80916364 80916090 9.140000e-47 198.0
55 TraesCS7A01G088400 chr3D 79.211 279 44 8 2836 3101 80600235 80599958 9.200000e-42 182.0
56 TraesCS7A01G088400 chr2A 87.167 413 27 17 2142 2542 743087916 743088314 2.960000e-121 446.0
57 TraesCS7A01G088400 chr2A 87.167 413 27 17 2142 2542 743089102 743089500 2.960000e-121 446.0
58 TraesCS7A01G088400 chr1B 92.216 167 10 2 2 168 585671374 585671537 2.510000e-57 233.0
59 TraesCS7A01G088400 chr1B 88.950 181 16 3 2 181 437424469 437424292 1.950000e-53 220.0
60 TraesCS7A01G088400 chr1B 87.255 102 6 6 2051 2152 13967012 13966918 4.410000e-20 110.0
61 TraesCS7A01G088400 chr1B 81.111 90 17 0 448 537 249339586 249339497 5.780000e-09 73.1
62 TraesCS7A01G088400 chr4D 91.018 167 12 2 2 168 370722066 370721903 5.420000e-54 222.0
63 TraesCS7A01G088400 chr6B 85.621 153 17 2 170 317 80745473 80745321 5.580000e-34 156.0
64 TraesCS7A01G088400 chr6B 96.471 85 1 1 2051 2135 277151526 277151608 5.620000e-29 139.0
65 TraesCS7A01G088400 chr6A 83.893 149 21 2 170 315 72427929 72428077 5.620000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G088400 chr7A 53518097 53522264 4167 True 7697.000000 7697 100.000000 1 4168 1 chr7A.!!$R1 4167
1 TraesCS7A01G088400 chr7A 53294113 53295496 1383 True 784.500000 1378 87.648500 733 2055 2 chr7A.!!$R3 1322
2 TraesCS7A01G088400 chr7A 612663498 612664270 772 True 728.000000 728 83.763000 3396 4166 1 chr7A.!!$R2 770
3 TraesCS7A01G088400 chr7D 50640219 50642477 2258 True 1625.000000 2555 92.971000 274 3268 2 chr7D.!!$R2 2994
4 TraesCS7A01G088400 chr7D 349940522 349941262 740 False 737.000000 737 84.718000 3425 4166 1 chr7D.!!$F2 741
5 TraesCS7A01G088400 chr7D 50427562 50429220 1658 True 671.000000 1406 89.707667 733 3104 3 chr7D.!!$R1 2371
6 TraesCS7A01G088400 chr4A 665438229 665440404 2175 False 702.750000 1677 89.397750 495 3375 4 chr4A.!!$F1 2880
7 TraesCS7A01G088400 chr4A 665317470 665319159 1689 True 644.333333 1349 88.042000 733 3133 3 chr4A.!!$R1 2400
8 TraesCS7A01G088400 chrUn 292579051 292579774 723 False 1107.000000 1107 93.891000 2055 2805 1 chrUn.!!$F1 750
9 TraesCS7A01G088400 chr3B 790470496 790471218 722 False 1050.000000 1050 92.573000 2056 2805 1 chr3B.!!$F1 749
10 TraesCS7A01G088400 chr3B 126732514 126733601 1087 True 693.000000 693 78.952000 992 2052 1 chr3B.!!$R1 1060
11 TraesCS7A01G088400 chr3B 126663503 126664588 1085 True 418.000000 654 81.465500 997 2052 2 chr3B.!!$R5 1055
12 TraesCS7A01G088400 chr1A 310868093 310870243 2150 False 1004.000000 1029 91.769500 2051 2805 2 chr1A.!!$F1 754
13 TraesCS7A01G088400 chr5B 136657138 136657913 775 True 806.000000 806 85.494000 3393 4166 1 chr5B.!!$R1 773
14 TraesCS7A01G088400 chr1D 161479929 161480702 773 True 798.000000 798 85.403000 3392 4166 1 chr1D.!!$R1 774
15 TraesCS7A01G088400 chr1D 57592038 57592812 774 False 793.000000 793 85.219000 3393 4166 1 chr1D.!!$F1 773
16 TraesCS7A01G088400 chr7B 193410694 193411470 776 True 773.000000 773 84.724000 3393 4166 1 chr7B.!!$R2 773
17 TraesCS7A01G088400 chr7B 1767842 1768351 509 True 741.000000 741 92.393000 2270 2808 1 chr7B.!!$R1 538
18 TraesCS7A01G088400 chr5D 303943620 303944394 774 False 765.000000 765 84.615000 3393 4166 1 chr5D.!!$F2 773
19 TraesCS7A01G088400 chr3A 687914565 687916584 2019 False 749.500000 750 89.280000 2172 2805 2 chr3A.!!$F2 633
20 TraesCS7A01G088400 chr3A 537413224 537413997 773 False 715.000000 715 83.462000 3393 4166 1 chr3A.!!$F1 773
21 TraesCS7A01G088400 chr3A 95358599 95359459 860 True 676.000000 676 81.001000 1180 2052 1 chr3A.!!$R1 872
22 TraesCS7A01G088400 chr5A 652380440 652381218 778 False 730.000000 730 83.801000 3393 4166 1 chr5A.!!$F1 773
23 TraesCS7A01G088400 chr3D 81121108 81121965 857 True 678.000000 678 81.115000 1180 2052 1 chr3D.!!$R3 872
24 TraesCS7A01G088400 chr3D 80916090 80917496 1406 True 432.500000 667 79.448500 997 3098 2 chr3D.!!$R4 2101
25 TraesCS7A01G088400 chr3D 81057205 81057714 509 True 292.000000 292 78.011000 997 1493 1 chr3D.!!$R2 496
26 TraesCS7A01G088400 chr2A 743087916 743089500 1584 False 446.000000 446 87.167000 2142 2542 2 chr2A.!!$F1 400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 462 0.041312 GCGGTAATGTTATGCGGCTG 60.041 55.0 0.0 0.0 0.00 4.85 F
672 680 0.106015 GGCTATTGGGGTCCATTGCT 60.106 55.0 0.0 0.0 31.53 3.91 F
1732 1976 0.388649 CACAAACCTCTCCCTCGTCG 60.389 60.0 0.0 0.0 0.00 5.12 F
2290 4184 0.324943 TTTTCTCCTTCGGCCCTCTG 59.675 55.0 0.0 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2134 0.388294 GGAGGCCGATGGTGTAGTAC 59.612 60.000 0.00 0.0 0.0 2.73 R
2248 4141 1.001974 TGTAGCGCCTGTGACTTTCAT 59.998 47.619 2.29 0.0 0.0 2.57 R
2673 4568 0.032678 GAGATGCCATCCGATCGTGT 59.967 55.000 15.09 0.0 0.0 4.49 R
3333 5260 0.033366 GACCAGCCCGCAAACAATTT 59.967 50.000 0.00 0.0 0.0 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.748031 TGCAAGTATTTGTTTGTTTGTGTAG 57.252 32.000 0.00 0.00 36.65 2.74
26 27 6.754209 TGCAAGTATTTGTTTGTTTGTGTAGG 59.246 34.615 0.00 0.00 36.65 3.18
27 28 6.754675 GCAAGTATTTGTTTGTTTGTGTAGGT 59.245 34.615 0.00 0.00 36.65 3.08
28 29 7.253950 GCAAGTATTTGTTTGTTTGTGTAGGTG 60.254 37.037 0.00 0.00 36.65 4.00
29 30 6.270064 AGTATTTGTTTGTTTGTGTAGGTGC 58.730 36.000 0.00 0.00 0.00 5.01
30 31 4.521130 TTTGTTTGTTTGTGTAGGTGCA 57.479 36.364 0.00 0.00 0.00 4.57
31 32 4.521130 TTGTTTGTTTGTGTAGGTGCAA 57.479 36.364 0.00 0.00 0.00 4.08
32 33 3.839293 TGTTTGTTTGTGTAGGTGCAAC 58.161 40.909 0.00 0.00 0.00 4.17
45 46 2.138596 GTGCAACCATTGGTGACTTG 57.861 50.000 9.62 4.96 35.34 3.16
46 47 1.408702 GTGCAACCATTGGTGACTTGT 59.591 47.619 9.62 0.00 35.34 3.16
47 48 1.408340 TGCAACCATTGGTGACTTGTG 59.592 47.619 9.62 3.80 35.34 3.33
48 49 1.408702 GCAACCATTGGTGACTTGTGT 59.591 47.619 9.62 0.00 35.34 3.72
49 50 2.621055 GCAACCATTGGTGACTTGTGTA 59.379 45.455 9.62 0.00 35.34 2.90
50 51 3.255642 GCAACCATTGGTGACTTGTGTAT 59.744 43.478 9.62 0.00 35.34 2.29
51 52 4.261994 GCAACCATTGGTGACTTGTGTATT 60.262 41.667 9.62 0.00 35.34 1.89
52 53 5.460646 CAACCATTGGTGACTTGTGTATTC 58.539 41.667 9.62 0.00 35.34 1.75
53 54 4.079253 ACCATTGGTGACTTGTGTATTCC 58.921 43.478 7.76 0.00 32.98 3.01
54 55 4.202567 ACCATTGGTGACTTGTGTATTCCT 60.203 41.667 7.76 0.00 32.98 3.36
55 56 4.396166 CCATTGGTGACTTGTGTATTCCTC 59.604 45.833 0.00 0.00 0.00 3.71
56 57 4.974645 TTGGTGACTTGTGTATTCCTCT 57.025 40.909 0.00 0.00 0.00 3.69
57 58 4.974645 TGGTGACTTGTGTATTCCTCTT 57.025 40.909 0.00 0.00 0.00 2.85
58 59 6.428083 TTGGTGACTTGTGTATTCCTCTTA 57.572 37.500 0.00 0.00 0.00 2.10
59 60 5.790593 TGGTGACTTGTGTATTCCTCTTAC 58.209 41.667 0.00 0.00 0.00 2.34
60 61 5.542635 TGGTGACTTGTGTATTCCTCTTACT 59.457 40.000 0.00 0.00 0.00 2.24
61 62 5.869888 GGTGACTTGTGTATTCCTCTTACTG 59.130 44.000 0.00 0.00 0.00 2.74
62 63 5.869888 GTGACTTGTGTATTCCTCTTACTGG 59.130 44.000 0.00 0.00 0.00 4.00
63 64 5.778241 TGACTTGTGTATTCCTCTTACTGGA 59.222 40.000 0.00 0.00 0.00 3.86
64 65 6.440647 TGACTTGTGTATTCCTCTTACTGGAT 59.559 38.462 0.00 0.00 33.09 3.41
65 66 7.038302 TGACTTGTGTATTCCTCTTACTGGATT 60.038 37.037 0.00 0.00 33.09 3.01
66 67 7.106239 ACTTGTGTATTCCTCTTACTGGATTG 58.894 38.462 0.00 0.00 33.09 2.67
67 68 6.867519 TGTGTATTCCTCTTACTGGATTGA 57.132 37.500 0.00 0.00 33.09 2.57
68 69 7.437713 TGTGTATTCCTCTTACTGGATTGAT 57.562 36.000 0.00 0.00 33.09 2.57
69 70 8.547481 TGTGTATTCCTCTTACTGGATTGATA 57.453 34.615 0.00 0.00 33.09 2.15
70 71 8.421784 TGTGTATTCCTCTTACTGGATTGATAC 58.578 37.037 0.00 0.00 33.09 2.24
71 72 7.873505 GTGTATTCCTCTTACTGGATTGATACC 59.126 40.741 0.00 0.00 33.09 2.73
72 73 7.789831 TGTATTCCTCTTACTGGATTGATACCT 59.210 37.037 0.00 0.00 33.09 3.08
73 74 7.698163 ATTCCTCTTACTGGATTGATACCTT 57.302 36.000 0.00 0.00 33.09 3.50
74 75 8.798975 ATTCCTCTTACTGGATTGATACCTTA 57.201 34.615 0.00 0.00 33.09 2.69
75 76 7.841282 TCCTCTTACTGGATTGATACCTTAG 57.159 40.000 0.00 0.00 0.00 2.18
76 77 7.363031 TCCTCTTACTGGATTGATACCTTAGT 58.637 38.462 0.00 0.00 0.00 2.24
77 78 7.844779 TCCTCTTACTGGATTGATACCTTAGTT 59.155 37.037 0.00 0.00 0.00 2.24
78 79 8.145122 CCTCTTACTGGATTGATACCTTAGTTC 58.855 40.741 0.00 0.00 0.00 3.01
79 80 8.840200 TCTTACTGGATTGATACCTTAGTTCT 57.160 34.615 0.00 0.00 0.00 3.01
80 81 9.931698 TCTTACTGGATTGATACCTTAGTTCTA 57.068 33.333 0.00 0.00 0.00 2.10
84 85 9.047947 ACTGGATTGATACCTTAGTTCTAAACT 57.952 33.333 0.00 0.00 45.40 2.66
85 86 9.319143 CTGGATTGATACCTTAGTTCTAAACTG 57.681 37.037 2.65 0.00 42.84 3.16
86 87 9.042450 TGGATTGATACCTTAGTTCTAAACTGA 57.958 33.333 2.65 0.00 42.84 3.41
89 90 9.838339 ATTGATACCTTAGTTCTAAACTGATGG 57.162 33.333 2.65 4.82 42.84 3.51
90 91 8.603898 TGATACCTTAGTTCTAAACTGATGGA 57.396 34.615 2.65 0.00 42.84 3.41
91 92 9.042450 TGATACCTTAGTTCTAAACTGATGGAA 57.958 33.333 2.65 0.00 42.84 3.53
92 93 9.886132 GATACCTTAGTTCTAAACTGATGGAAA 57.114 33.333 2.65 0.00 42.84 3.13
95 96 9.668497 ACCTTAGTTCTAAACTGATGGAAATAC 57.332 33.333 2.65 0.00 42.84 1.89
96 97 9.892130 CCTTAGTTCTAAACTGATGGAAATACT 57.108 33.333 2.65 0.00 42.84 2.12
113 114 8.458843 TGGAAATACTTATTTCTACTTTGCTGC 58.541 33.333 17.30 0.00 46.63 5.25
114 115 8.458843 GGAAATACTTATTTCTACTTTGCTGCA 58.541 33.333 17.30 0.00 46.63 4.41
117 118 8.737168 ATACTTATTTCTACTTTGCTGCATCA 57.263 30.769 1.84 0.00 0.00 3.07
118 119 7.636150 ACTTATTTCTACTTTGCTGCATCAT 57.364 32.000 1.84 0.00 0.00 2.45
119 120 7.701445 ACTTATTTCTACTTTGCTGCATCATC 58.299 34.615 1.84 0.00 0.00 2.92
120 121 7.555554 ACTTATTTCTACTTTGCTGCATCATCT 59.444 33.333 1.84 0.00 0.00 2.90
121 122 6.770746 ATTTCTACTTTGCTGCATCATCTT 57.229 33.333 1.84 0.00 0.00 2.40
122 123 6.579666 TTTCTACTTTGCTGCATCATCTTT 57.420 33.333 1.84 0.00 0.00 2.52
123 124 6.579666 TTCTACTTTGCTGCATCATCTTTT 57.420 33.333 1.84 0.00 0.00 2.27
124 125 6.187125 TCTACTTTGCTGCATCATCTTTTC 57.813 37.500 1.84 0.00 0.00 2.29
125 126 4.184079 ACTTTGCTGCATCATCTTTTCC 57.816 40.909 1.84 0.00 0.00 3.13
126 127 3.830755 ACTTTGCTGCATCATCTTTTCCT 59.169 39.130 1.84 0.00 0.00 3.36
127 128 4.282703 ACTTTGCTGCATCATCTTTTCCTT 59.717 37.500 1.84 0.00 0.00 3.36
128 129 4.877378 TTGCTGCATCATCTTTTCCTTT 57.123 36.364 1.84 0.00 0.00 3.11
129 130 4.877378 TGCTGCATCATCTTTTCCTTTT 57.123 36.364 0.00 0.00 0.00 2.27
130 131 5.217978 TGCTGCATCATCTTTTCCTTTTT 57.782 34.783 0.00 0.00 0.00 1.94
160 161 4.647424 AAAAACCAACGCAAGATCAAGA 57.353 36.364 0.00 0.00 43.62 3.02
161 162 4.647424 AAAACCAACGCAAGATCAAGAA 57.353 36.364 0.00 0.00 43.62 2.52
162 163 3.904136 AACCAACGCAAGATCAAGAAG 57.096 42.857 0.00 0.00 43.62 2.85
163 164 2.851195 ACCAACGCAAGATCAAGAAGT 58.149 42.857 0.00 0.00 43.62 3.01
164 165 4.002906 ACCAACGCAAGATCAAGAAGTA 57.997 40.909 0.00 0.00 43.62 2.24
165 166 3.997021 ACCAACGCAAGATCAAGAAGTAG 59.003 43.478 0.00 0.00 43.62 2.57
166 167 3.181516 CCAACGCAAGATCAAGAAGTAGC 60.182 47.826 0.00 0.00 43.62 3.58
167 168 3.319137 ACGCAAGATCAAGAAGTAGCA 57.681 42.857 0.00 0.00 43.62 3.49
168 169 2.996621 ACGCAAGATCAAGAAGTAGCAC 59.003 45.455 0.00 0.00 43.62 4.40
169 170 3.257393 CGCAAGATCAAGAAGTAGCACT 58.743 45.455 0.00 0.00 43.02 4.40
170 171 3.061831 CGCAAGATCAAGAAGTAGCACTG 59.938 47.826 0.00 0.00 43.02 3.66
171 172 3.999663 GCAAGATCAAGAAGTAGCACTGT 59.000 43.478 0.00 0.00 0.00 3.55
172 173 4.092675 GCAAGATCAAGAAGTAGCACTGTC 59.907 45.833 0.00 0.00 0.00 3.51
173 174 4.464069 AGATCAAGAAGTAGCACTGTCC 57.536 45.455 0.00 0.00 0.00 4.02
174 175 4.093011 AGATCAAGAAGTAGCACTGTCCT 58.907 43.478 0.00 0.00 0.00 3.85
175 176 3.944055 TCAAGAAGTAGCACTGTCCTC 57.056 47.619 0.00 0.00 0.00 3.71
176 177 2.229062 TCAAGAAGTAGCACTGTCCTCG 59.771 50.000 0.00 0.00 0.00 4.63
177 178 1.912417 AGAAGTAGCACTGTCCTCGT 58.088 50.000 0.00 0.00 0.00 4.18
178 179 1.813786 AGAAGTAGCACTGTCCTCGTC 59.186 52.381 0.00 0.00 0.00 4.20
179 180 1.813786 GAAGTAGCACTGTCCTCGTCT 59.186 52.381 0.00 0.00 0.00 4.18
180 181 1.455248 AGTAGCACTGTCCTCGTCTC 58.545 55.000 0.00 0.00 0.00 3.36
181 182 0.452585 GTAGCACTGTCCTCGTCTCC 59.547 60.000 0.00 0.00 0.00 3.71
182 183 0.680280 TAGCACTGTCCTCGTCTCCC 60.680 60.000 0.00 0.00 0.00 4.30
183 184 3.007973 GCACTGTCCTCGTCTCCCC 62.008 68.421 0.00 0.00 0.00 4.81
184 185 1.606601 CACTGTCCTCGTCTCCCCA 60.607 63.158 0.00 0.00 0.00 4.96
185 186 1.606889 ACTGTCCTCGTCTCCCCAC 60.607 63.158 0.00 0.00 0.00 4.61
186 187 2.283676 TGTCCTCGTCTCCCCACC 60.284 66.667 0.00 0.00 0.00 4.61
187 188 2.283676 GTCCTCGTCTCCCCACCA 60.284 66.667 0.00 0.00 0.00 4.17
188 189 1.911766 GTCCTCGTCTCCCCACCAA 60.912 63.158 0.00 0.00 0.00 3.67
189 190 1.152204 TCCTCGTCTCCCCACCAAA 60.152 57.895 0.00 0.00 0.00 3.28
190 191 0.765135 TCCTCGTCTCCCCACCAAAA 60.765 55.000 0.00 0.00 0.00 2.44
191 192 0.328258 CCTCGTCTCCCCACCAAAAT 59.672 55.000 0.00 0.00 0.00 1.82
192 193 1.271926 CCTCGTCTCCCCACCAAAATT 60.272 52.381 0.00 0.00 0.00 1.82
193 194 2.026636 CCTCGTCTCCCCACCAAAATTA 60.027 50.000 0.00 0.00 0.00 1.40
194 195 3.371595 CCTCGTCTCCCCACCAAAATTAT 60.372 47.826 0.00 0.00 0.00 1.28
195 196 3.616219 TCGTCTCCCCACCAAAATTATG 58.384 45.455 0.00 0.00 0.00 1.90
196 197 3.264706 TCGTCTCCCCACCAAAATTATGA 59.735 43.478 0.00 0.00 0.00 2.15
197 198 3.377172 CGTCTCCCCACCAAAATTATGAC 59.623 47.826 0.00 0.00 0.00 3.06
198 199 4.340617 GTCTCCCCACCAAAATTATGACA 58.659 43.478 0.00 0.00 0.00 3.58
199 200 4.956075 GTCTCCCCACCAAAATTATGACAT 59.044 41.667 0.00 0.00 0.00 3.06
200 201 5.067805 GTCTCCCCACCAAAATTATGACATC 59.932 44.000 0.00 0.00 0.00 3.06
201 202 3.951037 TCCCCACCAAAATTATGACATCG 59.049 43.478 0.00 0.00 0.00 3.84
202 203 3.490761 CCCCACCAAAATTATGACATCGC 60.491 47.826 0.00 0.00 0.00 4.58
203 204 3.362295 CCACCAAAATTATGACATCGCG 58.638 45.455 0.00 0.00 0.00 5.87
204 205 2.783284 CACCAAAATTATGACATCGCGC 59.217 45.455 0.00 0.00 0.00 6.86
205 206 2.223479 ACCAAAATTATGACATCGCGCC 60.223 45.455 0.00 0.00 0.00 6.53
206 207 2.223456 CCAAAATTATGACATCGCGCCA 60.223 45.455 0.00 0.00 0.00 5.69
207 208 3.433709 CAAAATTATGACATCGCGCCAA 58.566 40.909 0.00 0.00 0.00 4.52
208 209 3.988379 AAATTATGACATCGCGCCAAT 57.012 38.095 0.00 0.00 0.00 3.16
209 210 2.975410 ATTATGACATCGCGCCAATG 57.025 45.000 14.13 14.13 0.00 2.82
210 211 1.946745 TTATGACATCGCGCCAATGA 58.053 45.000 20.68 4.86 0.00 2.57
211 212 2.168326 TATGACATCGCGCCAATGAT 57.832 45.000 20.68 7.02 0.00 2.45
212 213 1.311859 ATGACATCGCGCCAATGATT 58.688 45.000 20.68 2.95 0.00 2.57
213 214 1.093972 TGACATCGCGCCAATGATTT 58.906 45.000 20.68 3.23 0.00 2.17
214 215 1.063912 TGACATCGCGCCAATGATTTC 59.936 47.619 20.68 11.88 0.00 2.17
215 216 1.331756 GACATCGCGCCAATGATTTCT 59.668 47.619 20.68 1.67 0.00 2.52
216 217 1.745087 ACATCGCGCCAATGATTTCTT 59.255 42.857 20.68 0.00 0.00 2.52
217 218 2.164219 ACATCGCGCCAATGATTTCTTT 59.836 40.909 20.68 0.00 0.00 2.52
218 219 2.261037 TCGCGCCAATGATTTCTTTG 57.739 45.000 0.00 0.48 0.00 2.77
219 220 1.809547 TCGCGCCAATGATTTCTTTGA 59.190 42.857 0.00 0.00 34.17 2.69
220 221 2.423185 TCGCGCCAATGATTTCTTTGAT 59.577 40.909 0.00 0.00 34.17 2.57
221 222 3.119531 TCGCGCCAATGATTTCTTTGATT 60.120 39.130 0.00 0.00 34.17 2.57
222 223 3.613737 CGCGCCAATGATTTCTTTGATTT 59.386 39.130 0.00 0.00 34.17 2.17
223 224 4.091800 CGCGCCAATGATTTCTTTGATTTT 59.908 37.500 0.00 0.00 34.17 1.82
224 225 5.389725 CGCGCCAATGATTTCTTTGATTTTT 60.390 36.000 0.00 0.00 34.17 1.94
225 226 6.183360 CGCGCCAATGATTTCTTTGATTTTTA 60.183 34.615 0.00 0.00 34.17 1.52
226 227 7.175410 GCGCCAATGATTTCTTTGATTTTTAG 58.825 34.615 0.00 0.00 34.17 1.85
227 228 7.674705 GCGCCAATGATTTCTTTGATTTTTAGG 60.675 37.037 0.00 0.00 34.17 2.69
228 229 7.545265 CGCCAATGATTTCTTTGATTTTTAGGA 59.455 33.333 7.54 0.00 34.17 2.94
229 230 9.218440 GCCAATGATTTCTTTGATTTTTAGGAA 57.782 29.630 7.54 0.00 34.17 3.36
259 260 8.901472 AAAGATGTATATAGCATAGGTGGAGA 57.099 34.615 0.00 0.00 0.00 3.71
260 261 9.499369 AAAGATGTATATAGCATAGGTGGAGAT 57.501 33.333 0.00 0.00 0.00 2.75
264 265 9.944079 ATGTATATAGCATAGGTGGAGATAACT 57.056 33.333 0.00 0.00 0.00 2.24
265 266 9.769677 TGTATATAGCATAGGTGGAGATAACTT 57.230 33.333 0.00 0.00 0.00 2.66
267 268 8.671987 ATATAGCATAGGTGGAGATAACTTGT 57.328 34.615 0.00 0.00 0.00 3.16
268 269 9.769677 ATATAGCATAGGTGGAGATAACTTGTA 57.230 33.333 0.00 0.00 0.00 2.41
269 270 6.163135 AGCATAGGTGGAGATAACTTGTAC 57.837 41.667 0.00 0.00 0.00 2.90
270 271 5.661312 AGCATAGGTGGAGATAACTTGTACA 59.339 40.000 0.00 0.00 0.00 2.90
271 272 6.156256 AGCATAGGTGGAGATAACTTGTACAA 59.844 38.462 8.28 8.28 0.00 2.41
272 273 6.258068 GCATAGGTGGAGATAACTTGTACAAC 59.742 42.308 3.59 0.00 0.00 3.32
284 285 6.639632 AACTTGTACAACAGATTTGAGCAT 57.360 33.333 3.59 0.00 0.00 3.79
291 292 9.013229 TGTACAACAGATTTGAGCATAATTTCT 57.987 29.630 0.00 0.00 0.00 2.52
299 300 7.838193 AGATTTGAGCATAATTTCTTTCCCTCT 59.162 33.333 0.00 0.00 0.00 3.69
303 304 5.059833 AGCATAATTTCTTTCCCTCTAGCG 58.940 41.667 0.00 0.00 0.00 4.26
317 318 6.891388 TCCCTCTAGCGGATAACAATTTTTA 58.109 36.000 0.00 0.00 0.00 1.52
321 322 8.499162 CCTCTAGCGGATAACAATTTTTATGAG 58.501 37.037 1.59 2.09 0.00 2.90
339 340 7.631510 TTATGAGAAGTGATGGGATGGAATA 57.368 36.000 0.00 0.00 0.00 1.75
340 341 5.296151 TGAGAAGTGATGGGATGGAATAC 57.704 43.478 0.00 0.00 0.00 1.89
350 351 1.541233 GGATGGAATACCTGAGGCGTG 60.541 57.143 0.00 0.00 37.04 5.34
422 423 7.821652 TGTTATCGTTTATCAAAGATTTGCCA 58.178 30.769 0.30 0.00 38.05 4.92
426 427 8.856490 ATCGTTTATCAAAGATTTGCCATTAC 57.144 30.769 0.30 0.00 38.05 1.89
429 430 9.438291 CGTTTATCAAAGATTTGCCATTACTAG 57.562 33.333 0.30 0.00 38.05 2.57
455 456 0.816018 TGCCGGGCGGTAATGTTATG 60.816 55.000 15.40 0.00 37.65 1.90
456 457 1.946267 CCGGGCGGTAATGTTATGC 59.054 57.895 0.00 0.00 0.00 3.14
457 458 1.567537 CGGGCGGTAATGTTATGCG 59.432 57.895 0.00 0.00 0.00 4.73
458 459 1.837538 CGGGCGGTAATGTTATGCGG 61.838 60.000 0.00 0.00 0.00 5.69
459 460 1.281656 GGCGGTAATGTTATGCGGC 59.718 57.895 0.00 0.00 0.00 6.53
460 461 1.164041 GGCGGTAATGTTATGCGGCT 61.164 55.000 0.00 0.00 0.00 5.52
461 462 0.041312 GCGGTAATGTTATGCGGCTG 60.041 55.000 0.00 0.00 0.00 4.85
464 465 2.285083 GGTAATGTTATGCGGCTGACA 58.715 47.619 0.00 3.87 0.00 3.58
468 469 2.401583 TGTTATGCGGCTGACATTCT 57.598 45.000 0.00 0.00 0.00 2.40
469 470 2.279741 TGTTATGCGGCTGACATTCTC 58.720 47.619 0.00 0.00 0.00 2.87
471 472 2.939103 GTTATGCGGCTGACATTCTCTT 59.061 45.455 0.00 0.00 0.00 2.85
478 479 2.363683 GCTGACATTCTCTTGGAAGGG 58.636 52.381 0.00 0.00 39.70 3.95
489 490 1.812571 CTTGGAAGGGGATGACAAACG 59.187 52.381 0.00 0.00 0.00 3.60
516 517 4.987912 GCATTTTGCTGGCAGTTTTAGTTA 59.012 37.500 17.16 0.00 40.96 2.24
517 518 5.639082 GCATTTTGCTGGCAGTTTTAGTTAT 59.361 36.000 17.16 0.00 40.96 1.89
518 519 6.401367 GCATTTTGCTGGCAGTTTTAGTTATG 60.401 38.462 17.16 9.94 40.96 1.90
521 522 3.756434 TGCTGGCAGTTTTAGTTATGACC 59.244 43.478 17.16 0.00 0.00 4.02
539 540 3.139077 GACCCGAGATCAAACAGTGTTT 58.861 45.455 15.58 15.58 0.00 2.83
550 558 8.398665 AGATCAAACAGTGTTTGAAGAAAGTAC 58.601 33.333 40.38 26.12 41.16 2.73
596 604 2.863137 TGTTTTGAAGAAAATGCCACGC 59.137 40.909 0.00 0.00 33.63 5.34
630 638 2.528287 ACAAAAACGTTCGCAAATGTCG 59.472 40.909 0.00 0.00 33.42 4.35
637 645 0.320374 TTCGCAAATGTCGTCCCTCT 59.680 50.000 0.00 0.00 0.00 3.69
672 680 0.106015 GGCTATTGGGGTCCATTGCT 60.106 55.000 0.00 0.00 31.53 3.91
677 685 2.029892 TTGGGGTCCATTGCTGGGTT 62.030 55.000 0.00 0.00 43.34 4.11
680 688 2.649129 GGTCCATTGCTGGGTTGCC 61.649 63.158 0.00 0.00 43.34 4.52
698 706 1.487482 CCGGTGACATGTATACTGCG 58.513 55.000 13.50 9.11 0.00 5.18
711 719 7.926018 ACATGTATACTGCGAATCAATCACTTA 59.074 33.333 0.00 0.00 0.00 2.24
850 861 3.876300 GCGTGGTGCAGAAGGTAG 58.124 61.111 0.00 0.00 45.45 3.18
908 1045 8.372521 GGCAAATATTCGTCAACAATTAACTTG 58.627 33.333 0.00 0.00 40.90 3.16
995 1148 3.181464 GGGAGTTGAGTTCCAGTATAGGC 60.181 52.174 0.00 0.00 36.40 3.93
1021 1175 1.474879 TGCCTGTGATGACGACGATAA 59.525 47.619 0.00 0.00 0.00 1.75
1251 1453 0.469331 TGTCCGAACTCACCTCCACT 60.469 55.000 0.00 0.00 0.00 4.00
1341 1543 3.753434 AGCGACCTCGTCTGGCTG 61.753 66.667 0.00 0.00 42.22 4.85
1593 1837 1.801913 CGAGACCTTCACCTTCGCG 60.802 63.158 0.00 0.00 0.00 5.87
1716 1960 4.980805 GTCGGCCTCGGCAACACA 62.981 66.667 10.51 0.00 44.11 3.72
1732 1976 0.388649 CACAAACCTCTCCCTCGTCG 60.389 60.000 0.00 0.00 0.00 5.12
1783 2027 1.116308 GAGGTTCTCCTACTGCCTCC 58.884 60.000 0.00 0.00 45.24 4.30
1890 2134 2.261671 CCGTCCAGGGTGAAGTCG 59.738 66.667 0.00 0.00 35.97 4.18
2052 2296 3.797353 GGGCGGATCAAGCTCCCA 61.797 66.667 11.38 0.00 36.96 4.37
2053 2297 2.272146 GGCGGATCAAGCTCCCAA 59.728 61.111 11.38 0.00 34.52 4.12
2143 2387 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2147 2391 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2151 2395 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2157 2401 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2158 2402 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2248 4141 0.973632 TAGCTTTGCCTTGTCTCCGA 59.026 50.000 0.00 0.00 0.00 4.55
2290 4184 0.324943 TTTTCTCCTTCGGCCCTCTG 59.675 55.000 0.00 0.00 0.00 3.35
2519 4414 3.090037 ACGACTCAGCCATACAACTAGT 58.910 45.455 0.00 0.00 0.00 2.57
2544 4439 4.703575 ACTCATGCATGCTAACAAACTGAT 59.296 37.500 22.25 0.00 0.00 2.90
2545 4440 5.882000 ACTCATGCATGCTAACAAACTGATA 59.118 36.000 22.25 0.00 0.00 2.15
2546 4441 6.375174 ACTCATGCATGCTAACAAACTGATAA 59.625 34.615 22.25 0.00 0.00 1.75
2547 4442 7.067859 ACTCATGCATGCTAACAAACTGATAAT 59.932 33.333 22.25 0.00 0.00 1.28
2548 4443 7.774134 TCATGCATGCTAACAAACTGATAATT 58.226 30.769 22.25 0.00 0.00 1.40
2549 4444 8.252417 TCATGCATGCTAACAAACTGATAATTT 58.748 29.630 22.25 0.00 0.00 1.82
2550 4445 7.815398 TGCATGCTAACAAACTGATAATTTG 57.185 32.000 20.33 0.00 41.81 2.32
2551 4446 6.310956 TGCATGCTAACAAACTGATAATTTGC 59.689 34.615 20.33 0.00 40.10 3.68
2552 4447 6.532657 GCATGCTAACAAACTGATAATTTGCT 59.467 34.615 11.37 0.00 40.10 3.91
2553 4448 7.063780 GCATGCTAACAAACTGATAATTTGCTT 59.936 33.333 11.37 0.00 40.10 3.91
2554 4449 8.589629 CATGCTAACAAACTGATAATTTGCTTC 58.410 33.333 0.00 0.00 40.10 3.86
2555 4450 7.656412 TGCTAACAAACTGATAATTTGCTTCA 58.344 30.769 0.00 0.00 40.10 3.02
2556 4451 8.140628 TGCTAACAAACTGATAATTTGCTTCAA 58.859 29.630 0.00 0.00 40.10 2.69
2557 4452 8.977505 GCTAACAAACTGATAATTTGCTTCAAA 58.022 29.630 0.00 0.00 40.10 2.69
2664 4559 4.883026 GTCACACGACGCTACCAT 57.117 55.556 0.00 0.00 31.07 3.55
2673 4568 2.410060 CGCTACCATACCGCGTCA 59.590 61.111 4.92 0.00 41.78 4.35
2805 4700 8.564574 TGAACATGACAAGATTAAACCTAACAC 58.435 33.333 0.00 0.00 0.00 3.32
2879 4774 0.553333 GGCTAAAGGAGGGGCAGATT 59.447 55.000 0.00 0.00 0.00 2.40
2901 4796 1.519455 GCGAAGATCCCTGACGTGG 60.519 63.158 0.00 0.00 0.00 4.94
3248 5175 1.779157 CTCCGTACGTATTGACATGCG 59.221 52.381 15.21 0.00 43.57 4.73
3258 5185 2.512515 GACATGCGCACTCCCTCC 60.513 66.667 14.90 0.00 0.00 4.30
3259 5186 4.457496 ACATGCGCACTCCCTCCG 62.457 66.667 14.90 0.00 0.00 4.63
3268 5195 2.483013 CGCACTCCCTCCGAAAATATCA 60.483 50.000 0.00 0.00 0.00 2.15
3269 5196 3.541632 GCACTCCCTCCGAAAATATCAA 58.458 45.455 0.00 0.00 0.00 2.57
3270 5197 3.945285 GCACTCCCTCCGAAAATATCAAA 59.055 43.478 0.00 0.00 0.00 2.69
3271 5198 4.035675 GCACTCCCTCCGAAAATATCAAAG 59.964 45.833 0.00 0.00 0.00 2.77
3272 5199 4.576463 CACTCCCTCCGAAAATATCAAAGG 59.424 45.833 0.00 0.00 31.90 3.11
3273 5200 4.473559 ACTCCCTCCGAAAATATCAAAGGA 59.526 41.667 0.00 0.00 33.24 3.36
3274 5201 5.045140 ACTCCCTCCGAAAATATCAAAGGAA 60.045 40.000 0.00 0.00 33.24 3.36
3275 5202 5.822204 TCCCTCCGAAAATATCAAAGGAAA 58.178 37.500 0.00 0.00 33.24 3.13
3276 5203 6.249951 TCCCTCCGAAAATATCAAAGGAAAA 58.750 36.000 0.00 0.00 33.24 2.29
3277 5204 6.722129 TCCCTCCGAAAATATCAAAGGAAAAA 59.278 34.615 0.00 0.00 33.24 1.94
3278 5205 7.398904 TCCCTCCGAAAATATCAAAGGAAAAAT 59.601 33.333 0.00 0.00 33.24 1.82
3279 5206 8.691797 CCCTCCGAAAATATCAAAGGAAAAATA 58.308 33.333 0.00 0.00 33.24 1.40
3295 5222 9.783081 AAGGAAAAATATGAAAAGTTTGATGCT 57.217 25.926 0.00 0.00 0.00 3.79
3375 5305 0.895530 ACTCGTCCGTGGACAATGAT 59.104 50.000 18.54 0.00 44.77 2.45
3376 5306 1.280982 CTCGTCCGTGGACAATGATG 58.719 55.000 18.54 1.85 44.77 3.07
3377 5307 0.606096 TCGTCCGTGGACAATGATGT 59.394 50.000 18.54 0.00 44.77 3.06
3378 5308 0.721154 CGTCCGTGGACAATGATGTG 59.279 55.000 18.54 0.00 44.77 3.21
3379 5309 1.671556 CGTCCGTGGACAATGATGTGA 60.672 52.381 18.54 0.00 44.77 3.58
3380 5310 2.422597 GTCCGTGGACAATGATGTGAA 58.577 47.619 14.10 0.00 44.02 3.18
3381 5311 2.811431 GTCCGTGGACAATGATGTGAAA 59.189 45.455 14.10 0.00 44.02 2.69
3382 5312 3.073678 TCCGTGGACAATGATGTGAAAG 58.926 45.455 0.00 0.00 40.74 2.62
3383 5313 2.414559 CCGTGGACAATGATGTGAAAGC 60.415 50.000 0.00 0.00 40.74 3.51
3384 5314 2.485426 CGTGGACAATGATGTGAAAGCT 59.515 45.455 0.00 0.00 40.74 3.74
3385 5315 3.668757 CGTGGACAATGATGTGAAAGCTG 60.669 47.826 0.00 0.00 40.74 4.24
3386 5316 2.821378 TGGACAATGATGTGAAAGCTGG 59.179 45.455 0.00 0.00 40.74 4.85
3387 5317 3.084039 GGACAATGATGTGAAAGCTGGA 58.916 45.455 0.00 0.00 40.74 3.86
3388 5318 3.698040 GGACAATGATGTGAAAGCTGGAT 59.302 43.478 0.00 0.00 40.74 3.41
3389 5319 4.883585 GGACAATGATGTGAAAGCTGGATA 59.116 41.667 0.00 0.00 40.74 2.59
3390 5320 5.533903 GGACAATGATGTGAAAGCTGGATAT 59.466 40.000 0.00 0.00 40.74 1.63
3391 5321 6.293845 GGACAATGATGTGAAAGCTGGATATC 60.294 42.308 0.00 0.00 40.74 1.63
3392 5322 5.533903 ACAATGATGTGAAAGCTGGATATCC 59.466 40.000 15.39 15.39 38.69 2.59
3393 5323 4.776435 TGATGTGAAAGCTGGATATCCA 57.224 40.909 23.17 23.17 45.30 3.41
3394 5324 5.114764 TGATGTGAAAGCTGGATATCCAA 57.885 39.130 24.54 8.35 46.97 3.53
3403 5333 8.055181 TGAAAGCTGGATATCCAATCTTTTAGT 58.945 33.333 31.61 20.57 46.97 2.24
3406 5336 9.732130 AAGCTGGATATCCAATCTTTTAGTATC 57.268 33.333 24.54 0.00 46.97 2.24
3442 5372 7.969690 ATAGATATGATCCCGAGTCATTCTT 57.030 36.000 3.18 0.00 37.48 2.52
3443 5373 6.678568 AGATATGATCCCGAGTCATTCTTT 57.321 37.500 3.18 0.00 37.48 2.52
3535 5467 5.526111 TGTGACTTAGCAACTTGTTCTAACC 59.474 40.000 0.00 0.00 0.00 2.85
3544 5476 5.062308 GCAACTTGTTCTAACCGAGTATGAG 59.938 44.000 0.00 0.00 0.00 2.90
3567 5499 5.829924 AGCCATGGATGAATGTTTACCTAAG 59.170 40.000 18.40 0.00 0.00 2.18
3568 5500 5.594317 GCCATGGATGAATGTTTACCTAAGT 59.406 40.000 18.40 0.00 0.00 2.24
3569 5501 6.096846 GCCATGGATGAATGTTTACCTAAGTT 59.903 38.462 18.40 0.00 0.00 2.66
3630 5562 9.561270 CTCAAATGATCAATCATGATAGCATTC 57.439 33.333 17.82 8.84 46.30 2.67
3672 5604 6.317789 ACATACATGTTGAAGTGTTCTTGG 57.682 37.500 2.30 0.00 37.90 3.61
3748 5680 3.997021 GCGAATATCACCCTCATCGAATT 59.003 43.478 0.00 0.00 32.38 2.17
3790 5723 1.996798 ATCTGTGTCGGGGTATCGAT 58.003 50.000 2.16 2.16 41.40 3.59
3926 5861 5.358160 ACCTCTCTTCTTTGAAGTTGGTTTG 59.642 40.000 7.13 0.00 0.00 2.93
3928 5863 5.505780 TCTCTTCTTTGAAGTTGGTTTGGA 58.494 37.500 7.13 0.00 0.00 3.53
3938 5873 5.411361 TGAAGTTGGTTTGGATGATAGTTCG 59.589 40.000 0.00 0.00 0.00 3.95
3946 5881 3.531538 TGGATGATAGTTCGGAAAGTGC 58.468 45.455 0.00 0.00 0.00 4.40
4010 5945 2.930040 AGCATGTCCAATAGTTCGTTCG 59.070 45.455 0.00 0.00 0.00 3.95
4045 5980 7.778185 AGTCAACACAACTATCTAGGTAGTT 57.222 36.000 20.60 20.60 43.72 2.24
4050 5985 8.746530 CAACACAACTATCTAGGTAGTTCCTAA 58.253 37.037 22.94 0.00 46.81 2.69
4063 5998 5.876460 GGTAGTTCCTAAAAGCATCGGTTAA 59.124 40.000 0.00 0.00 0.00 2.01
4128 6063 6.318144 AGGATGATCAGACAAAGCATTAAGTG 59.682 38.462 0.09 0.00 0.00 3.16
4133 6068 5.610398 TCAGACAAAGCATTAAGTGACTGA 58.390 37.500 0.00 0.00 39.37 3.41
4141 6078 4.006319 GCATTAAGTGACTGAAGAAGCCT 58.994 43.478 0.00 0.00 0.00 4.58
4166 6103 4.567327 CCAAGCTTGAGGGAGATTCTCTTT 60.567 45.833 28.05 2.33 32.78 2.52
4167 6104 4.925390 AGCTTGAGGGAGATTCTCTTTT 57.075 40.909 13.22 0.00 32.78 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.437862 CCTACACAAACAAACAAATACTTGCAT 59.562 33.333 0.00 0.00 35.84 3.96
2 3 6.754675 ACCTACACAAACAAACAAATACTTGC 59.245 34.615 0.00 0.00 35.84 4.01
3 4 7.253950 GCACCTACACAAACAAACAAATACTTG 60.254 37.037 0.00 0.00 38.61 3.16
4 5 6.754675 GCACCTACACAAACAAACAAATACTT 59.245 34.615 0.00 0.00 0.00 2.24
5 6 6.127591 TGCACCTACACAAACAAACAAATACT 60.128 34.615 0.00 0.00 0.00 2.12
6 7 6.037098 TGCACCTACACAAACAAACAAATAC 58.963 36.000 0.00 0.00 0.00 1.89
8 9 5.078411 TGCACCTACACAAACAAACAAAT 57.922 34.783 0.00 0.00 0.00 2.32
9 10 4.521130 TGCACCTACACAAACAAACAAA 57.479 36.364 0.00 0.00 0.00 2.83
12 13 3.183754 GGTTGCACCTACACAAACAAAC 58.816 45.455 0.00 0.00 34.73 2.93
13 14 2.826128 TGGTTGCACCTACACAAACAAA 59.174 40.909 6.83 0.00 40.38 2.83
14 15 2.447443 TGGTTGCACCTACACAAACAA 58.553 42.857 6.83 0.00 40.38 2.83
16 17 3.380142 CAATGGTTGCACCTACACAAAC 58.620 45.455 6.83 0.00 39.58 2.93
17 18 2.363680 CCAATGGTTGCACCTACACAAA 59.636 45.455 6.83 0.00 39.58 2.83
20 21 1.269448 CACCAATGGTTGCACCTACAC 59.731 52.381 0.16 0.00 39.58 2.90
21 22 1.143889 TCACCAATGGTTGCACCTACA 59.856 47.619 0.16 0.00 39.58 2.74
22 23 1.539827 GTCACCAATGGTTGCACCTAC 59.460 52.381 0.16 0.00 39.58 3.18
23 24 1.423541 AGTCACCAATGGTTGCACCTA 59.576 47.619 0.16 0.00 39.58 3.08
24 25 0.185901 AGTCACCAATGGTTGCACCT 59.814 50.000 0.16 0.00 39.58 4.00
25 26 1.039856 AAGTCACCAATGGTTGCACC 58.960 50.000 0.16 0.00 39.22 5.01
26 27 1.408702 ACAAGTCACCAATGGTTGCAC 59.591 47.619 0.16 0.00 31.02 4.57
27 28 1.408340 CACAAGTCACCAATGGTTGCA 59.592 47.619 0.16 0.00 31.02 4.08
28 29 1.408702 ACACAAGTCACCAATGGTTGC 59.591 47.619 0.16 0.00 31.02 4.17
29 30 5.452078 AATACACAAGTCACCAATGGTTG 57.548 39.130 0.16 0.42 31.02 3.77
30 31 4.522789 GGAATACACAAGTCACCAATGGTT 59.477 41.667 0.16 0.00 31.02 3.67
31 32 4.079253 GGAATACACAAGTCACCAATGGT 58.921 43.478 0.00 0.00 35.62 3.55
32 33 4.335416 AGGAATACACAAGTCACCAATGG 58.665 43.478 0.00 0.00 0.00 3.16
33 34 5.248640 AGAGGAATACACAAGTCACCAATG 58.751 41.667 0.00 0.00 0.00 2.82
34 35 5.505181 AGAGGAATACACAAGTCACCAAT 57.495 39.130 0.00 0.00 0.00 3.16
35 36 4.974645 AGAGGAATACACAAGTCACCAA 57.025 40.909 0.00 0.00 0.00 3.67
36 37 4.974645 AAGAGGAATACACAAGTCACCA 57.025 40.909 0.00 0.00 0.00 4.17
37 38 5.869888 CAGTAAGAGGAATACACAAGTCACC 59.130 44.000 0.00 0.00 0.00 4.02
38 39 5.869888 CCAGTAAGAGGAATACACAAGTCAC 59.130 44.000 0.00 0.00 0.00 3.67
39 40 5.778241 TCCAGTAAGAGGAATACACAAGTCA 59.222 40.000 0.00 0.00 30.71 3.41
40 41 6.282199 TCCAGTAAGAGGAATACACAAGTC 57.718 41.667 0.00 0.00 30.71 3.01
41 42 6.875972 ATCCAGTAAGAGGAATACACAAGT 57.124 37.500 0.00 0.00 38.93 3.16
42 43 7.331026 TCAATCCAGTAAGAGGAATACACAAG 58.669 38.462 0.00 0.00 38.93 3.16
43 44 7.252612 TCAATCCAGTAAGAGGAATACACAA 57.747 36.000 0.00 0.00 38.93 3.33
44 45 6.867519 TCAATCCAGTAAGAGGAATACACA 57.132 37.500 0.00 0.00 38.93 3.72
45 46 7.873505 GGTATCAATCCAGTAAGAGGAATACAC 59.126 40.741 0.00 0.00 38.93 2.90
46 47 7.789831 AGGTATCAATCCAGTAAGAGGAATACA 59.210 37.037 0.00 0.00 38.93 2.29
47 48 8.196378 AGGTATCAATCCAGTAAGAGGAATAC 57.804 38.462 0.00 0.00 38.93 1.89
48 49 8.798975 AAGGTATCAATCCAGTAAGAGGAATA 57.201 34.615 0.00 0.00 38.93 1.75
49 50 7.698163 AAGGTATCAATCCAGTAAGAGGAAT 57.302 36.000 0.00 0.00 38.93 3.01
50 51 7.844779 ACTAAGGTATCAATCCAGTAAGAGGAA 59.155 37.037 0.00 0.00 38.93 3.36
51 52 7.363031 ACTAAGGTATCAATCCAGTAAGAGGA 58.637 38.462 0.00 0.00 39.97 3.71
52 53 7.604657 ACTAAGGTATCAATCCAGTAAGAGG 57.395 40.000 0.00 0.00 0.00 3.69
53 54 8.919145 AGAACTAAGGTATCAATCCAGTAAGAG 58.081 37.037 0.00 0.00 0.00 2.85
54 55 8.840200 AGAACTAAGGTATCAATCCAGTAAGA 57.160 34.615 0.00 0.00 0.00 2.10
58 59 9.047947 AGTTTAGAACTAAGGTATCAATCCAGT 57.952 33.333 0.00 0.00 40.69 4.00
59 60 9.319143 CAGTTTAGAACTAAGGTATCAATCCAG 57.681 37.037 0.00 0.00 40.46 3.86
60 61 9.042450 TCAGTTTAGAACTAAGGTATCAATCCA 57.958 33.333 0.00 0.00 40.46 3.41
63 64 9.838339 CCATCAGTTTAGAACTAAGGTATCAAT 57.162 33.333 0.00 0.00 40.46 2.57
64 65 9.042450 TCCATCAGTTTAGAACTAAGGTATCAA 57.958 33.333 0.00 0.00 40.46 2.57
65 66 8.603898 TCCATCAGTTTAGAACTAAGGTATCA 57.396 34.615 0.00 0.00 40.46 2.15
66 67 9.886132 TTTCCATCAGTTTAGAACTAAGGTATC 57.114 33.333 0.00 0.00 40.46 2.24
69 70 9.668497 GTATTTCCATCAGTTTAGAACTAAGGT 57.332 33.333 0.00 0.00 40.46 3.50
70 71 9.892130 AGTATTTCCATCAGTTTAGAACTAAGG 57.108 33.333 0.00 0.00 40.46 2.69
91 92 9.177608 TGATGCAGCAAAGTAGAAATAAGTATT 57.822 29.630 0.00 0.00 0.00 1.89
92 93 8.737168 TGATGCAGCAAAGTAGAAATAAGTAT 57.263 30.769 0.00 0.00 0.00 2.12
93 94 8.737168 ATGATGCAGCAAAGTAGAAATAAGTA 57.263 30.769 9.54 0.00 0.00 2.24
94 95 7.555554 AGATGATGCAGCAAAGTAGAAATAAGT 59.444 33.333 9.54 0.00 0.00 2.24
95 96 7.928103 AGATGATGCAGCAAAGTAGAAATAAG 58.072 34.615 9.54 0.00 0.00 1.73
96 97 7.870509 AGATGATGCAGCAAAGTAGAAATAA 57.129 32.000 9.54 0.00 0.00 1.40
97 98 7.870509 AAGATGATGCAGCAAAGTAGAAATA 57.129 32.000 9.54 0.00 0.00 1.40
98 99 6.770746 AAGATGATGCAGCAAAGTAGAAAT 57.229 33.333 9.54 0.00 0.00 2.17
99 100 6.579666 AAAGATGATGCAGCAAAGTAGAAA 57.420 33.333 9.54 0.00 0.00 2.52
100 101 6.349611 GGAAAAGATGATGCAGCAAAGTAGAA 60.350 38.462 9.54 0.00 0.00 2.10
101 102 5.124457 GGAAAAGATGATGCAGCAAAGTAGA 59.876 40.000 9.54 0.00 0.00 2.59
102 103 5.125097 AGGAAAAGATGATGCAGCAAAGTAG 59.875 40.000 9.54 0.00 0.00 2.57
103 104 5.012239 AGGAAAAGATGATGCAGCAAAGTA 58.988 37.500 9.54 0.00 0.00 2.24
104 105 3.830755 AGGAAAAGATGATGCAGCAAAGT 59.169 39.130 9.54 0.00 0.00 2.66
105 106 4.451629 AGGAAAAGATGATGCAGCAAAG 57.548 40.909 9.54 0.00 0.00 2.77
106 107 4.877378 AAGGAAAAGATGATGCAGCAAA 57.123 36.364 9.54 0.00 0.00 3.68
107 108 4.877378 AAAGGAAAAGATGATGCAGCAA 57.123 36.364 9.54 0.00 0.00 3.91
108 109 4.877378 AAAAGGAAAAGATGATGCAGCA 57.123 36.364 7.31 7.31 0.00 4.41
139 140 4.647424 TCTTGATCTTGCGTTGGTTTTT 57.353 36.364 0.00 0.00 0.00 1.94
140 141 4.097892 ACTTCTTGATCTTGCGTTGGTTTT 59.902 37.500 0.00 0.00 0.00 2.43
141 142 3.632145 ACTTCTTGATCTTGCGTTGGTTT 59.368 39.130 0.00 0.00 0.00 3.27
142 143 3.214328 ACTTCTTGATCTTGCGTTGGTT 58.786 40.909 0.00 0.00 0.00 3.67
143 144 2.851195 ACTTCTTGATCTTGCGTTGGT 58.149 42.857 0.00 0.00 0.00 3.67
144 145 3.181516 GCTACTTCTTGATCTTGCGTTGG 60.182 47.826 0.00 0.00 0.00 3.77
145 146 3.433274 TGCTACTTCTTGATCTTGCGTTG 59.567 43.478 0.00 0.00 0.00 4.10
146 147 3.433615 GTGCTACTTCTTGATCTTGCGTT 59.566 43.478 0.00 0.00 0.00 4.84
147 148 2.996621 GTGCTACTTCTTGATCTTGCGT 59.003 45.455 0.00 0.00 0.00 5.24
148 149 3.061831 CAGTGCTACTTCTTGATCTTGCG 59.938 47.826 0.00 0.00 0.00 4.85
149 150 3.999663 ACAGTGCTACTTCTTGATCTTGC 59.000 43.478 0.00 0.00 0.00 4.01
150 151 4.629200 GGACAGTGCTACTTCTTGATCTTG 59.371 45.833 0.00 0.00 0.00 3.02
151 152 4.530161 AGGACAGTGCTACTTCTTGATCTT 59.470 41.667 0.00 0.00 0.00 2.40
152 153 4.093011 AGGACAGTGCTACTTCTTGATCT 58.907 43.478 0.00 0.00 0.00 2.75
153 154 4.429108 GAGGACAGTGCTACTTCTTGATC 58.571 47.826 0.00 0.00 0.00 2.92
154 155 3.119316 CGAGGACAGTGCTACTTCTTGAT 60.119 47.826 0.00 0.00 0.00 2.57
155 156 2.229062 CGAGGACAGTGCTACTTCTTGA 59.771 50.000 0.00 0.00 0.00 3.02
156 157 2.029828 ACGAGGACAGTGCTACTTCTTG 60.030 50.000 0.00 0.00 0.00 3.02
157 158 2.229302 GACGAGGACAGTGCTACTTCTT 59.771 50.000 0.00 0.00 0.00 2.52
158 159 1.813786 GACGAGGACAGTGCTACTTCT 59.186 52.381 0.00 0.00 0.00 2.85
159 160 1.813786 AGACGAGGACAGTGCTACTTC 59.186 52.381 0.00 0.00 0.00 3.01
160 161 1.813786 GAGACGAGGACAGTGCTACTT 59.186 52.381 0.00 0.00 0.00 2.24
161 162 1.455248 GAGACGAGGACAGTGCTACT 58.545 55.000 0.00 0.00 0.00 2.57
162 163 0.452585 GGAGACGAGGACAGTGCTAC 59.547 60.000 0.00 0.00 0.00 3.58
163 164 0.680280 GGGAGACGAGGACAGTGCTA 60.680 60.000 0.00 0.00 0.00 3.49
164 165 1.979693 GGGAGACGAGGACAGTGCT 60.980 63.158 0.00 0.00 0.00 4.40
165 166 2.574399 GGGAGACGAGGACAGTGC 59.426 66.667 0.00 0.00 0.00 4.40
166 167 1.606601 TGGGGAGACGAGGACAGTG 60.607 63.158 0.00 0.00 0.00 3.66
167 168 1.606889 GTGGGGAGACGAGGACAGT 60.607 63.158 0.00 0.00 0.00 3.55
168 169 2.352032 GGTGGGGAGACGAGGACAG 61.352 68.421 0.00 0.00 0.00 3.51
169 170 2.283676 GGTGGGGAGACGAGGACA 60.284 66.667 0.00 0.00 0.00 4.02
170 171 1.477685 TTTGGTGGGGAGACGAGGAC 61.478 60.000 0.00 0.00 0.00 3.85
171 172 0.765135 TTTTGGTGGGGAGACGAGGA 60.765 55.000 0.00 0.00 0.00 3.71
172 173 0.328258 ATTTTGGTGGGGAGACGAGG 59.672 55.000 0.00 0.00 0.00 4.63
173 174 2.200373 AATTTTGGTGGGGAGACGAG 57.800 50.000 0.00 0.00 0.00 4.18
174 175 3.264706 TCATAATTTTGGTGGGGAGACGA 59.735 43.478 0.00 0.00 0.00 4.20
175 176 3.377172 GTCATAATTTTGGTGGGGAGACG 59.623 47.826 0.00 0.00 0.00 4.18
176 177 4.340617 TGTCATAATTTTGGTGGGGAGAC 58.659 43.478 0.00 0.00 0.00 3.36
177 178 4.666412 TGTCATAATTTTGGTGGGGAGA 57.334 40.909 0.00 0.00 0.00 3.71
178 179 4.036734 CGATGTCATAATTTTGGTGGGGAG 59.963 45.833 0.00 0.00 0.00 4.30
179 180 3.951037 CGATGTCATAATTTTGGTGGGGA 59.049 43.478 0.00 0.00 0.00 4.81
180 181 3.490761 GCGATGTCATAATTTTGGTGGGG 60.491 47.826 0.00 0.00 0.00 4.96
181 182 3.705604 GCGATGTCATAATTTTGGTGGG 58.294 45.455 0.00 0.00 0.00 4.61
182 183 3.362295 CGCGATGTCATAATTTTGGTGG 58.638 45.455 0.00 0.00 0.00 4.61
183 184 2.783284 GCGCGATGTCATAATTTTGGTG 59.217 45.455 12.10 0.00 0.00 4.17
184 185 2.223479 GGCGCGATGTCATAATTTTGGT 60.223 45.455 12.10 0.00 0.00 3.67
185 186 2.223456 TGGCGCGATGTCATAATTTTGG 60.223 45.455 12.10 0.00 0.00 3.28
186 187 3.063670 TGGCGCGATGTCATAATTTTG 57.936 42.857 12.10 0.00 0.00 2.44
187 188 3.773860 TTGGCGCGATGTCATAATTTT 57.226 38.095 12.10 0.00 27.93 1.82
188 189 3.314913 TCATTGGCGCGATGTCATAATTT 59.685 39.130 12.10 0.00 27.93 1.82
189 190 2.877786 TCATTGGCGCGATGTCATAATT 59.122 40.909 12.10 0.00 27.93 1.40
190 191 2.493035 TCATTGGCGCGATGTCATAAT 58.507 42.857 12.10 0.00 27.93 1.28
191 192 1.946745 TCATTGGCGCGATGTCATAA 58.053 45.000 12.10 0.00 27.93 1.90
192 193 2.168326 ATCATTGGCGCGATGTCATA 57.832 45.000 12.10 3.87 27.93 2.15
193 194 1.311859 AATCATTGGCGCGATGTCAT 58.688 45.000 12.10 6.54 27.93 3.06
194 195 1.063912 GAAATCATTGGCGCGATGTCA 59.936 47.619 12.10 0.00 0.00 3.58
195 196 1.331756 AGAAATCATTGGCGCGATGTC 59.668 47.619 12.10 12.12 0.00 3.06
196 197 1.382522 AGAAATCATTGGCGCGATGT 58.617 45.000 12.10 4.14 0.00 3.06
197 198 2.480224 AAGAAATCATTGGCGCGATG 57.520 45.000 12.10 14.21 0.00 3.84
198 199 2.423185 TCAAAGAAATCATTGGCGCGAT 59.577 40.909 12.10 0.00 0.00 4.58
199 200 1.809547 TCAAAGAAATCATTGGCGCGA 59.190 42.857 12.10 0.00 0.00 5.87
200 201 2.261037 TCAAAGAAATCATTGGCGCG 57.739 45.000 0.00 0.00 0.00 6.86
201 202 5.535043 AAAATCAAAGAAATCATTGGCGC 57.465 34.783 0.00 0.00 0.00 6.53
202 203 7.545265 TCCTAAAAATCAAAGAAATCATTGGCG 59.455 33.333 0.00 0.00 0.00 5.69
203 204 8.776376 TCCTAAAAATCAAAGAAATCATTGGC 57.224 30.769 0.00 0.00 0.00 4.52
233 234 9.990868 TCTCCACCTATGCTATATACATCTTTA 57.009 33.333 2.36 0.00 0.00 1.85
234 235 8.901472 TCTCCACCTATGCTATATACATCTTT 57.099 34.615 2.36 0.00 0.00 2.52
238 239 9.944079 AGTTATCTCCACCTATGCTATATACAT 57.056 33.333 0.00 4.11 0.00 2.29
239 240 9.769677 AAGTTATCTCCACCTATGCTATATACA 57.230 33.333 0.00 0.00 0.00 2.29
241 242 9.769677 ACAAGTTATCTCCACCTATGCTATATA 57.230 33.333 0.00 0.00 0.00 0.86
242 243 8.671987 ACAAGTTATCTCCACCTATGCTATAT 57.328 34.615 0.00 0.00 0.00 0.86
243 244 9.021807 GTACAAGTTATCTCCACCTATGCTATA 57.978 37.037 0.00 0.00 0.00 1.31
244 245 7.509318 TGTACAAGTTATCTCCACCTATGCTAT 59.491 37.037 0.00 0.00 0.00 2.97
245 246 6.837048 TGTACAAGTTATCTCCACCTATGCTA 59.163 38.462 0.00 0.00 0.00 3.49
246 247 5.661312 TGTACAAGTTATCTCCACCTATGCT 59.339 40.000 0.00 0.00 0.00 3.79
247 248 5.914033 TGTACAAGTTATCTCCACCTATGC 58.086 41.667 0.00 0.00 0.00 3.14
248 249 7.327975 TGTTGTACAAGTTATCTCCACCTATG 58.672 38.462 8.98 0.00 0.00 2.23
249 250 7.399191 TCTGTTGTACAAGTTATCTCCACCTAT 59.601 37.037 8.98 0.00 0.00 2.57
250 251 6.722590 TCTGTTGTACAAGTTATCTCCACCTA 59.277 38.462 8.98 0.00 0.00 3.08
251 252 5.542635 TCTGTTGTACAAGTTATCTCCACCT 59.457 40.000 8.98 0.00 0.00 4.00
252 253 5.790593 TCTGTTGTACAAGTTATCTCCACC 58.209 41.667 8.98 0.00 0.00 4.61
253 254 7.907214 AATCTGTTGTACAAGTTATCTCCAC 57.093 36.000 8.98 0.00 0.00 4.02
254 255 8.154203 TCAAATCTGTTGTACAAGTTATCTCCA 58.846 33.333 8.98 0.00 0.00 3.86
255 256 8.547967 TCAAATCTGTTGTACAAGTTATCTCC 57.452 34.615 8.98 0.00 0.00 3.71
256 257 8.171840 GCTCAAATCTGTTGTACAAGTTATCTC 58.828 37.037 8.98 0.00 0.00 2.75
257 258 7.661437 TGCTCAAATCTGTTGTACAAGTTATCT 59.339 33.333 8.98 0.00 0.00 1.98
258 259 7.806690 TGCTCAAATCTGTTGTACAAGTTATC 58.193 34.615 8.98 0.00 0.00 1.75
259 260 7.744087 TGCTCAAATCTGTTGTACAAGTTAT 57.256 32.000 8.98 0.00 0.00 1.89
260 261 7.744087 ATGCTCAAATCTGTTGTACAAGTTA 57.256 32.000 8.98 0.00 0.00 2.24
261 262 6.639632 ATGCTCAAATCTGTTGTACAAGTT 57.360 33.333 8.98 0.00 0.00 2.66
262 263 7.744087 TTATGCTCAAATCTGTTGTACAAGT 57.256 32.000 8.98 0.00 0.00 3.16
263 264 9.630098 AAATTATGCTCAAATCTGTTGTACAAG 57.370 29.630 8.98 0.00 0.00 3.16
264 265 9.624697 GAAATTATGCTCAAATCTGTTGTACAA 57.375 29.630 3.59 3.59 0.00 2.41
265 266 9.013229 AGAAATTATGCTCAAATCTGTTGTACA 57.987 29.630 0.00 0.00 0.00 2.90
266 267 9.846248 AAGAAATTATGCTCAAATCTGTTGTAC 57.154 29.630 0.00 0.00 0.00 2.90
268 269 9.415544 GAAAGAAATTATGCTCAAATCTGTTGT 57.584 29.630 0.00 0.00 0.00 3.32
269 270 8.866956 GGAAAGAAATTATGCTCAAATCTGTTG 58.133 33.333 0.00 0.00 0.00 3.33
270 271 8.037166 GGGAAAGAAATTATGCTCAAATCTGTT 58.963 33.333 0.00 0.00 0.00 3.16
271 272 7.398332 AGGGAAAGAAATTATGCTCAAATCTGT 59.602 33.333 0.00 0.00 0.00 3.41
272 273 7.779073 AGGGAAAGAAATTATGCTCAAATCTG 58.221 34.615 0.00 0.00 0.00 2.90
284 285 5.888982 ATCCGCTAGAGGGAAAGAAATTA 57.111 39.130 13.05 0.00 37.07 1.40
291 292 5.367945 AATTGTTATCCGCTAGAGGGAAA 57.632 39.130 13.05 4.64 37.07 3.13
299 300 9.391006 ACTTCTCATAAAAATTGTTATCCGCTA 57.609 29.630 0.00 0.00 0.00 4.26
317 318 5.222007 GGTATTCCATCCCATCACTTCTCAT 60.222 44.000 0.00 0.00 0.00 2.90
321 322 4.103153 TCAGGTATTCCATCCCATCACTTC 59.897 45.833 0.00 0.00 35.89 3.01
339 340 0.106918 TTTTGTTCCACGCCTCAGGT 60.107 50.000 0.00 0.00 0.00 4.00
340 341 1.001378 CTTTTTGTTCCACGCCTCAGG 60.001 52.381 0.00 0.00 0.00 3.86
350 351 8.793592 TCTCCTTATTAAGCTTCTTTTTGTTCC 58.206 33.333 0.00 0.00 0.00 3.62
397 398 7.821652 TGGCAAATCTTTGATAAACGATAACA 58.178 30.769 6.84 0.00 40.55 2.41
401 402 8.686334 AGTAATGGCAAATCTTTGATAAACGAT 58.314 29.630 6.84 0.00 40.55 3.73
408 409 7.592885 ATGCTAGTAATGGCAAATCTTTGAT 57.407 32.000 5.04 0.00 41.90 2.57
419 420 3.115554 CGGCAAAAATGCTAGTAATGGC 58.884 45.455 0.40 0.00 34.73 4.40
422 423 2.100749 GCCCGGCAAAAATGCTAGTAAT 59.899 45.455 3.91 0.00 34.73 1.89
426 427 1.226660 CGCCCGGCAAAAATGCTAG 60.227 57.895 10.77 0.00 34.73 3.42
429 430 2.493907 TTACCGCCCGGCAAAAATGC 62.494 55.000 10.77 0.00 39.32 3.56
455 456 0.391661 TCCAAGAGAATGTCAGCCGC 60.392 55.000 0.00 0.00 0.00 6.53
456 457 2.005451 CTTCCAAGAGAATGTCAGCCG 58.995 52.381 0.00 0.00 32.82 5.52
457 458 2.363683 CCTTCCAAGAGAATGTCAGCC 58.636 52.381 0.00 0.00 32.82 4.85
458 459 2.363683 CCCTTCCAAGAGAATGTCAGC 58.636 52.381 0.00 0.00 32.82 4.26
459 460 2.573462 TCCCCTTCCAAGAGAATGTCAG 59.427 50.000 0.00 0.00 32.82 3.51
460 461 2.631384 TCCCCTTCCAAGAGAATGTCA 58.369 47.619 0.00 0.00 32.82 3.58
461 462 3.200825 TCATCCCCTTCCAAGAGAATGTC 59.799 47.826 0.00 0.00 32.82 3.06
464 465 3.192944 TGTCATCCCCTTCCAAGAGAAT 58.807 45.455 0.00 0.00 32.82 2.40
468 469 2.552155 CGTTTGTCATCCCCTTCCAAGA 60.552 50.000 0.00 0.00 0.00 3.02
469 470 1.812571 CGTTTGTCATCCCCTTCCAAG 59.187 52.381 0.00 0.00 0.00 3.61
471 472 1.060729 TCGTTTGTCATCCCCTTCCA 58.939 50.000 0.00 0.00 0.00 3.53
478 479 2.611974 AATGCGTTCGTTTGTCATCC 57.388 45.000 0.00 0.00 0.00 3.51
516 517 2.303022 ACACTGTTTGATCTCGGGTCAT 59.697 45.455 0.00 0.00 0.00 3.06
517 518 1.691976 ACACTGTTTGATCTCGGGTCA 59.308 47.619 0.00 0.00 0.00 4.02
518 519 2.457366 ACACTGTTTGATCTCGGGTC 57.543 50.000 0.00 0.00 0.00 4.46
521 522 4.511454 TCTTCAAACACTGTTTGATCTCGG 59.489 41.667 29.37 19.17 38.12 4.63
539 540 5.569630 GCTTCAGAGGATGGTACTTTCTTCA 60.570 44.000 9.26 0.00 0.00 3.02
550 558 3.349927 TGACAATTGCTTCAGAGGATGG 58.650 45.455 5.05 0.00 0.00 3.51
652 660 1.455383 GCAATGGACCCCAATAGCCG 61.455 60.000 0.00 0.00 36.95 5.52
672 680 1.769716 TACATGTCACCGGCAACCCA 61.770 55.000 0.00 0.00 0.00 4.51
677 685 1.472552 GCAGTATACATGTCACCGGCA 60.473 52.381 0.00 0.00 0.00 5.69
680 688 2.485266 TCGCAGTATACATGTCACCG 57.515 50.000 0.00 2.47 0.00 4.94
698 706 7.283127 TGGCTACTTCCAATAAGTGATTGATTC 59.717 37.037 1.29 0.00 46.94 2.52
711 719 1.985159 TGGTGAGTGGCTACTTCCAAT 59.015 47.619 19.83 0.00 37.86 3.16
1021 1175 3.821055 GAGCAGGAGAGCGCGAGT 61.821 66.667 12.10 0.00 40.15 4.18
1161 1330 1.743623 CTTAACCACGCGGCCATGA 60.744 57.895 12.47 0.00 34.57 3.07
1239 1441 1.524863 CGAACGGAGTGGAGGTGAGT 61.525 60.000 0.00 0.00 45.00 3.41
1251 1453 1.100510 CCATCAGGTACTCGAACGGA 58.899 55.000 0.00 0.00 34.60 4.69
1341 1543 1.953231 GCCCCTTCCTGCTGCAATTC 61.953 60.000 3.02 0.00 0.00 2.17
1593 1837 4.864334 CCAGCTGGGGCATCGTCC 62.864 72.222 26.14 0.00 41.70 4.79
1716 1960 2.971452 GCGACGAGGGAGAGGTTT 59.029 61.111 0.00 0.00 0.00 3.27
1890 2134 0.388294 GGAGGCCGATGGTGTAGTAC 59.612 60.000 0.00 0.00 0.00 2.73
1963 2207 1.593209 TTGTGCCGGAGTCAACGAC 60.593 57.895 5.05 0.00 0.00 4.34
2115 2359 3.640967 GAGAGAGAGAGAGAGAGAGAGCT 59.359 52.174 0.00 0.00 0.00 4.09
2116 2360 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
2143 2387 5.256474 AGAAACCAAGAGAGAGAGAGAGAG 58.744 45.833 0.00 0.00 0.00 3.20
2147 2391 4.094887 CGAGAGAAACCAAGAGAGAGAGAG 59.905 50.000 0.00 0.00 0.00 3.20
2248 4141 1.001974 TGTAGCGCCTGTGACTTTCAT 59.998 47.619 2.29 0.00 0.00 2.57
2290 4184 3.948473 GAGTTAATGAAAAGAGGAGGCCC 59.052 47.826 0.00 0.00 0.00 5.80
2519 4414 5.704978 TCAGTTTGTTAGCATGCATGAGTAA 59.295 36.000 30.64 21.39 0.00 2.24
2561 4456 9.178758 GATCTGGGTGAGTAATTATCAGTTTTT 57.821 33.333 0.00 0.00 0.00 1.94
2562 4457 8.328758 TGATCTGGGTGAGTAATTATCAGTTTT 58.671 33.333 0.00 0.00 0.00 2.43
2563 4458 7.861629 TGATCTGGGTGAGTAATTATCAGTTT 58.138 34.615 0.00 0.00 0.00 2.66
2564 4459 7.437713 TGATCTGGGTGAGTAATTATCAGTT 57.562 36.000 0.00 0.00 0.00 3.16
2565 4460 6.463614 GCTGATCTGGGTGAGTAATTATCAGT 60.464 42.308 0.00 0.00 40.62 3.41
2566 4461 5.931146 GCTGATCTGGGTGAGTAATTATCAG 59.069 44.000 0.00 0.00 41.16 2.90
2567 4462 5.221722 GGCTGATCTGGGTGAGTAATTATCA 60.222 44.000 1.46 0.00 0.00 2.15
2568 4463 5.241662 GGCTGATCTGGGTGAGTAATTATC 58.758 45.833 1.46 0.00 0.00 1.75
2569 4464 4.262635 CGGCTGATCTGGGTGAGTAATTAT 60.263 45.833 1.46 0.00 0.00 1.28
2664 4559 2.098871 CGATCGTGTGACGCGGTA 59.901 61.111 18.98 0.00 42.21 4.02
2673 4568 0.032678 GAGATGCCATCCGATCGTGT 59.967 55.000 15.09 0.00 0.00 4.49
2879 4774 3.074369 TCAGGGATCTTCGCCGCA 61.074 61.111 0.00 0.00 0.00 5.69
3047 4954 0.964358 CCTTGTCGAGGTCGTACCCT 60.964 60.000 0.00 0.00 39.75 4.34
3208 5135 1.401539 GCACGGGAGAACAATGCTTTC 60.402 52.381 0.00 0.00 33.44 2.62
3248 5175 3.194005 TGATATTTTCGGAGGGAGTGC 57.806 47.619 0.00 0.00 0.00 4.40
3269 5196 9.783081 AGCATCAAACTTTTCATATTTTTCCTT 57.217 25.926 0.00 0.00 0.00 3.36
3279 5206 9.768662 ACTCAAAATTAGCATCAAACTTTTCAT 57.231 25.926 0.00 0.00 0.00 2.57
3280 5207 9.598517 AACTCAAAATTAGCATCAAACTTTTCA 57.401 25.926 0.00 0.00 0.00 2.69
3331 5258 1.134250 ACCAGCCCGCAAACAATTTTT 60.134 42.857 0.00 0.00 0.00 1.94
3333 5260 0.033366 GACCAGCCCGCAAACAATTT 59.967 50.000 0.00 0.00 0.00 1.82
3334 5261 1.665442 GACCAGCCCGCAAACAATT 59.335 52.632 0.00 0.00 0.00 2.32
3335 5262 2.275380 GGACCAGCCCGCAAACAAT 61.275 57.895 0.00 0.00 0.00 2.71
3343 5273 2.742372 CGAGTTTGGACCAGCCCG 60.742 66.667 0.00 0.00 34.97 6.13
3384 5314 9.170890 AGGTGATACTAAAAGATTGGATATCCA 57.829 33.333 20.98 20.98 45.94 3.41
3389 5319 7.995488 CCTGAAGGTGATACTAAAAGATTGGAT 59.005 37.037 0.00 0.00 0.00 3.41
3390 5320 7.182026 TCCTGAAGGTGATACTAAAAGATTGGA 59.818 37.037 0.00 0.00 36.34 3.53
3391 5321 7.338710 TCCTGAAGGTGATACTAAAAGATTGG 58.661 38.462 0.00 0.00 36.34 3.16
3392 5322 8.970859 ATCCTGAAGGTGATACTAAAAGATTG 57.029 34.615 0.00 0.00 36.34 2.67
3406 5336 7.255766 CGGGATCATATCTATATCCTGAAGGTG 60.256 44.444 3.75 0.00 45.39 4.00
3423 5353 5.011125 GGAGAAAGAATGACTCGGGATCATA 59.989 44.000 0.00 0.00 35.72 2.15
3443 5373 9.395068 TCCTATTAGAGTTATGACTAGAGGAGA 57.605 37.037 0.00 0.00 35.88 3.71
3535 5467 3.391506 TTCATCCATGGCTCATACTCG 57.608 47.619 6.96 0.00 0.00 4.18
3544 5476 5.594317 ACTTAGGTAAACATTCATCCATGGC 59.406 40.000 6.96 0.00 0.00 4.40
3727 5659 7.834068 ATAAATTCGATGAGGGTGATATTCG 57.166 36.000 0.00 0.00 0.00 3.34
3772 5705 1.679680 GAATCGATACCCCGACACAGA 59.320 52.381 0.00 0.00 41.70 3.41
3843 5778 7.121907 GGCAGAGAAATCTATGAAAGAAAAGGT 59.878 37.037 9.13 0.00 37.37 3.50
3926 5861 2.872858 GGCACTTTCCGAACTATCATCC 59.127 50.000 0.00 0.00 0.00 3.51
3928 5863 2.238646 TGGGCACTTTCCGAACTATCAT 59.761 45.455 0.00 0.00 0.00 2.45
3981 5916 4.910195 ACTATTGGACATGCTGAAGAACA 58.090 39.130 0.00 0.00 0.00 3.18
4010 5945 5.821204 AGTTGTGTTGACTATGTTTTCAGC 58.179 37.500 0.00 0.00 0.00 4.26
4045 5980 5.105567 TGGATTAACCGATGCTTTTAGGA 57.894 39.130 0.00 0.00 42.61 2.94
4050 5985 9.965824 CTTTTATAATGGATTAACCGATGCTTT 57.034 29.630 0.00 0.00 42.61 3.51
4090 6025 8.331740 TGTCTGATCATCCTCCTAAGAAAATTT 58.668 33.333 0.00 0.00 0.00 1.82
4092 6027 7.443302 TGTCTGATCATCCTCCTAAGAAAAT 57.557 36.000 0.00 0.00 0.00 1.82
4101 6036 3.272574 TGCTTTGTCTGATCATCCTCC 57.727 47.619 0.00 0.00 0.00 4.30
4128 6063 1.948144 GCTTGGGAGGCTTCTTCAGTC 60.948 57.143 0.00 0.00 0.00 3.51
4133 6068 0.773644 TCAAGCTTGGGAGGCTTCTT 59.226 50.000 25.73 0.00 46.59 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.