Multiple sequence alignment - TraesCS7A01G088300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G088300 chr7A 100.000 3506 0 0 1 3506 53296173 53292668 0.000000e+00 6475
1 TraesCS7A01G088300 chr7A 88.291 1170 111 12 904 2061 53521365 53520210 0.000000e+00 1378
2 TraesCS7A01G088300 chr7A 87.006 177 13 6 678 851 53521532 53521363 1.280000e-44 191
3 TraesCS7A01G088300 chr7D 92.832 1953 71 29 666 2610 50429232 50427341 0.000000e+00 2767
4 TraesCS7A01G088300 chr7D 89.599 1471 119 18 904 2364 50641847 50640401 0.000000e+00 1838
5 TraesCS7A01G088300 chr7D 87.395 357 33 5 3162 3506 50425552 50425196 1.960000e-107 399
6 TraesCS7A01G088300 chr7D 87.766 188 18 4 476 662 50429450 50429267 7.620000e-52 215
7 TraesCS7A01G088300 chr7D 87.356 174 15 4 678 851 50642011 50641845 3.570000e-45 193
8 TraesCS7A01G088300 chr7D 83.051 118 19 1 2711 2827 586762950 586763067 4.790000e-19 106
9 TraesCS7A01G088300 chr4A 90.827 1984 107 40 672 2624 665319165 665317226 0.000000e+00 2586
10 TraesCS7A01G088300 chr4A 88.791 1472 126 17 907 2361 665438736 665440185 0.000000e+00 1768
11 TraesCS7A01G088300 chr4A 91.083 157 14 0 476 632 665319402 665319246 2.740000e-51 213
12 TraesCS7A01G088300 chr4A 89.677 155 14 1 676 830 665438466 665438618 2.760000e-46 196
13 TraesCS7A01G088300 chr3D 82.119 1180 191 10 1186 2364 81121965 81120805 0.000000e+00 992
14 TraesCS7A01G088300 chr3D 81.031 970 168 12 1398 2362 80600915 80599957 0.000000e+00 758
15 TraesCS7A01G088300 chr3D 77.281 559 79 23 970 1503 81057736 81057201 5.730000e-73 285
16 TraesCS7A01G088300 chr3D 78.235 170 26 7 2677 2837 556988652 556988485 8.010000e-17 99
17 TraesCS7A01G088300 chr3B 79.792 1440 217 38 979 2364 126400810 126399391 0.000000e+00 979
18 TraesCS7A01G088300 chr3B 79.384 1397 211 37 1012 2359 126664576 126663208 0.000000e+00 913
19 TraesCS7A01G088300 chr3B 82.373 295 38 3 3067 3347 539656338 539656044 9.720000e-61 244
20 TraesCS7A01G088300 chr3A 81.668 971 162 11 1399 2364 94254845 94253886 0.000000e+00 793
21 TraesCS7A01G088300 chr3A 82.353 476 75 5 1 472 447635386 447634916 4.210000e-109 405
22 TraesCS7A01G088300 chr3A 74.823 846 171 34 1543 2361 94107255 94108085 9.320000e-91 344
23 TraesCS7A01G088300 chr6A 83.054 478 66 10 1 472 480861290 480861758 1.500000e-113 420
24 TraesCS7A01G088300 chr5A 82.773 476 73 5 1 472 46149871 46150341 1.950000e-112 416
25 TraesCS7A01G088300 chr5A 82.942 469 66 9 1 463 1800640 1801100 9.060000e-111 411
26 TraesCS7A01G088300 chr1B 82.881 479 67 10 1 472 667269690 667269220 1.950000e-112 416
27 TraesCS7A01G088300 chr1B 82.672 479 68 10 1 472 667272309 667271839 9.060000e-111 411
28 TraesCS7A01G088300 chr6D 82.766 470 65 13 1 463 47678606 47679066 4.210000e-109 405
29 TraesCS7A01G088300 chr6D 83.832 167 21 5 2675 2837 459736563 459736399 1.690000e-33 154
30 TraesCS7A01G088300 chr5D 82.463 479 69 11 2 472 449360269 449359798 4.210000e-109 405
31 TraesCS7A01G088300 chr5D 80.473 169 24 6 2674 2837 565282687 565282523 1.710000e-23 121
32 TraesCS7A01G088300 chr2A 82.427 478 69 10 1 472 682976472 682976940 1.520000e-108 403
33 TraesCS7A01G088300 chr7B 80.503 159 24 6 2676 2829 535519817 535519973 7.950000e-22 115
34 TraesCS7A01G088300 chr7B 80.645 155 21 9 2675 2824 608409315 608409465 1.030000e-20 111
35 TraesCS7A01G088300 chr7B 80.741 135 21 5 2674 2805 376933991 376933859 2.230000e-17 100
36 TraesCS7A01G088300 chrUn 79.054 148 29 1 2670 2815 95294220 95294367 2.230000e-17 100
37 TraesCS7A01G088300 chr2B 77.976 168 29 6 2676 2837 495146741 495146576 8.010000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G088300 chr7A 53292668 53296173 3505 True 6475.0 6475 100.0000 1 3506 1 chr7A.!!$R1 3505
1 TraesCS7A01G088300 chr7A 53520210 53521532 1322 True 784.5 1378 87.6485 678 2061 2 chr7A.!!$R2 1383
2 TraesCS7A01G088300 chr7D 50425196 50429450 4254 True 1127.0 2767 89.3310 476 3506 3 chr7D.!!$R1 3030
3 TraesCS7A01G088300 chr7D 50640401 50642011 1610 True 1015.5 1838 88.4775 678 2364 2 chr7D.!!$R2 1686
4 TraesCS7A01G088300 chr4A 665317226 665319402 2176 True 1399.5 2586 90.9550 476 2624 2 chr4A.!!$R1 2148
5 TraesCS7A01G088300 chr4A 665438466 665440185 1719 False 982.0 1768 89.2340 676 2361 2 chr4A.!!$F1 1685
6 TraesCS7A01G088300 chr3D 81120805 81121965 1160 True 992.0 992 82.1190 1186 2364 1 chr3D.!!$R3 1178
7 TraesCS7A01G088300 chr3D 80599957 80600915 958 True 758.0 758 81.0310 1398 2362 1 chr3D.!!$R1 964
8 TraesCS7A01G088300 chr3D 81057201 81057736 535 True 285.0 285 77.2810 970 1503 1 chr3D.!!$R2 533
9 TraesCS7A01G088300 chr3B 126399391 126400810 1419 True 979.0 979 79.7920 979 2364 1 chr3B.!!$R1 1385
10 TraesCS7A01G088300 chr3B 126663208 126664576 1368 True 913.0 913 79.3840 1012 2359 1 chr3B.!!$R2 1347
11 TraesCS7A01G088300 chr3A 94253886 94254845 959 True 793.0 793 81.6680 1399 2364 1 chr3A.!!$R1 965
12 TraesCS7A01G088300 chr3A 94107255 94108085 830 False 344.0 344 74.8230 1543 2361 1 chr3A.!!$F1 818
13 TraesCS7A01G088300 chr1B 667269220 667272309 3089 True 413.5 416 82.7765 1 472 2 chr1B.!!$R1 471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 461 0.037697 AGCGTTGCACGGATACTTCA 60.038 50.0 10.02 0.0 42.82 3.02 F
968 1103 0.179181 CATAACAGCAGCAGCAACCG 60.179 55.0 3.17 0.0 45.49 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1338 2679 0.675837 TGCTGCAGTTGAGCCAGATC 60.676 55.0 16.64 0.0 35.43 2.75 R
2888 4621 0.107456 ATTAGGAGGGAGTGCGCATG 59.893 55.0 15.91 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.237285 GGTGCAGAAGCGGTGTTGAT 61.237 55.000 0.00 0.00 46.23 2.57
68 69 2.902608 AGTTGGTGACTGGGTCTATCA 58.097 47.619 0.00 0.00 37.17 2.15
70 71 2.567615 GTTGGTGACTGGGTCTATCAGT 59.432 50.000 0.00 0.00 46.82 3.41
71 72 3.750501 TGGTGACTGGGTCTATCAGTA 57.249 47.619 0.00 0.00 44.51 2.74
72 73 3.362706 TGGTGACTGGGTCTATCAGTAC 58.637 50.000 0.00 0.00 44.51 2.73
73 74 2.694109 GGTGACTGGGTCTATCAGTACC 59.306 54.545 0.00 0.00 44.51 3.34
89 90 2.233605 TACCTGCCGGTTGATGGACG 62.234 60.000 4.69 0.00 42.13 4.79
105 106 3.092088 ACGGGAGTTAACCATGGGA 57.908 52.632 18.09 0.00 43.33 4.37
113 114 6.192044 GGGAGTTAACCATGGGAAATCTAAA 58.808 40.000 18.09 0.00 0.00 1.85
135 136 2.341846 AGTGTCGGAAAGCCTGAAAA 57.658 45.000 0.00 0.00 0.00 2.29
138 140 1.946768 TGTCGGAAAGCCTGAAAAGTG 59.053 47.619 0.00 0.00 0.00 3.16
147 149 3.290710 AGCCTGAAAAGTGAAAAGCTGA 58.709 40.909 0.00 0.00 0.00 4.26
158 160 6.842437 AGTGAAAAGCTGAGAGAGTACATA 57.158 37.500 0.00 0.00 0.00 2.29
160 162 6.435904 AGTGAAAAGCTGAGAGAGTACATAGT 59.564 38.462 0.00 0.00 0.00 2.12
168 170 9.226606 AGCTGAGAGAGTACATAGTTGTATATC 57.773 37.037 0.00 0.00 40.35 1.63
169 171 9.226606 GCTGAGAGAGTACATAGTTGTATATCT 57.773 37.037 0.00 4.48 40.35 1.98
183 185 6.650807 AGTTGTATATCTTGTGGTGTTCAGTG 59.349 38.462 0.00 0.00 0.00 3.66
208 210 0.527565 GGCAAAGTGCGGATGACAAT 59.472 50.000 0.00 0.00 46.21 2.71
209 211 1.067635 GGCAAAGTGCGGATGACAATT 60.068 47.619 0.00 0.00 46.21 2.32
210 212 2.163412 GGCAAAGTGCGGATGACAATTA 59.837 45.455 0.00 0.00 46.21 1.40
211 213 3.181487 GGCAAAGTGCGGATGACAATTAT 60.181 43.478 0.00 0.00 46.21 1.28
212 214 4.036262 GGCAAAGTGCGGATGACAATTATA 59.964 41.667 0.00 0.00 46.21 0.98
213 215 5.207768 GCAAAGTGCGGATGACAATTATAG 58.792 41.667 0.00 0.00 31.71 1.31
215 217 6.458206 GCAAAGTGCGGATGACAATTATAGAA 60.458 38.462 0.00 0.00 31.71 2.10
217 219 5.300752 AGTGCGGATGACAATTATAGAAGG 58.699 41.667 0.00 0.00 0.00 3.46
218 220 5.070446 AGTGCGGATGACAATTATAGAAGGA 59.930 40.000 0.00 0.00 0.00 3.36
220 222 5.304357 TGCGGATGACAATTATAGAAGGAGA 59.696 40.000 0.00 0.00 0.00 3.71
223 225 6.294010 CGGATGACAATTATAGAAGGAGACGA 60.294 42.308 0.00 0.00 0.00 4.20
245 247 5.390991 CGAAGTGCTATAGCGATGAGACATA 60.391 44.000 19.55 0.00 45.83 2.29
246 248 6.522625 AAGTGCTATAGCGATGAGACATAT 57.477 37.500 19.55 0.17 45.83 1.78
260 262 6.115448 TGAGACATATCAGAGACTATCCGA 57.885 41.667 0.00 0.00 0.00 4.55
261 263 6.534634 TGAGACATATCAGAGACTATCCGAA 58.465 40.000 0.00 0.00 0.00 4.30
268 271 4.856509 TCAGAGACTATCCGAAAAGAGGA 58.143 43.478 0.00 0.00 42.69 3.71
278 281 2.484264 CCGAAAAGAGGATGACACAACC 59.516 50.000 0.00 0.00 0.00 3.77
283 286 0.460284 GAGGATGACACAACCGCGAT 60.460 55.000 8.23 0.00 31.34 4.58
292 295 1.262950 CACAACCGCGATTTTGACTCA 59.737 47.619 8.23 0.00 0.00 3.41
293 296 1.944024 ACAACCGCGATTTTGACTCAA 59.056 42.857 8.23 0.00 0.00 3.02
310 313 1.425066 TCAAGGTGAGATTGGGCAACT 59.575 47.619 0.00 0.00 32.40 3.16
311 314 2.642311 TCAAGGTGAGATTGGGCAACTA 59.358 45.455 0.00 0.00 30.51 2.24
336 339 7.031226 TGAAATTCCTTCAAGTTTCAGACAG 57.969 36.000 0.00 0.00 41.21 3.51
337 340 6.828273 TGAAATTCCTTCAAGTTTCAGACAGA 59.172 34.615 0.00 0.00 41.21 3.41
340 343 5.097742 TCCTTCAAGTTTCAGACAGACAA 57.902 39.130 0.00 0.00 0.00 3.18
348 351 6.610741 AGTTTCAGACAGACAATCAAGAAC 57.389 37.500 0.00 0.00 0.00 3.01
350 353 3.653344 TCAGACAGACAATCAAGAACGG 58.347 45.455 0.00 0.00 0.00 4.44
354 357 0.320374 AGACAATCAAGAACGGGCGA 59.680 50.000 0.00 0.00 0.00 5.54
355 358 0.721718 GACAATCAAGAACGGGCGAG 59.278 55.000 0.00 0.00 0.00 5.03
357 360 1.078426 AATCAAGAACGGGCGAGGG 60.078 57.895 0.00 0.00 0.00 4.30
358 361 1.838073 AATCAAGAACGGGCGAGGGT 61.838 55.000 0.00 0.00 0.00 4.34
359 362 0.974010 ATCAAGAACGGGCGAGGGTA 60.974 55.000 0.00 0.00 0.00 3.69
361 364 0.529992 CAAGAACGGGCGAGGGTATC 60.530 60.000 0.00 0.00 0.00 2.24
393 399 7.392418 GGGTAACTCTTATATGGGTCCAATAC 58.608 42.308 0.00 0.00 0.00 1.89
395 401 6.742559 AACTCTTATATGGGTCCAATACGT 57.257 37.500 0.00 0.00 0.00 3.57
398 404 6.092955 TCTTATATGGGTCCAATACGTGAC 57.907 41.667 0.00 0.00 0.00 3.67
416 422 4.919168 CGTGACTTGTTCATTTTCATGCAT 59.081 37.500 0.00 0.00 36.32 3.96
434 440 6.424812 TCATGCATATAGTGATTAGTGTGTGC 59.575 38.462 0.00 4.32 36.48 4.57
436 442 7.049799 TGCATATAGTGATTAGTGTGTGCTA 57.950 36.000 10.92 0.00 36.74 3.49
438 444 6.090088 GCATATAGTGATTAGTGTGTGCTAGC 59.910 42.308 8.10 8.10 34.28 3.42
442 448 2.993220 TGATTAGTGTGTGCTAGCGTTG 59.007 45.455 10.77 0.00 0.00 4.10
443 449 1.144969 TTAGTGTGTGCTAGCGTTGC 58.855 50.000 10.77 0.87 0.00 4.17
450 456 1.513622 TGCTAGCGTTGCACGGATA 59.486 52.632 10.77 0.00 42.82 2.59
453 459 1.922570 CTAGCGTTGCACGGATACTT 58.077 50.000 10.02 0.00 42.82 2.24
455 461 0.037697 AGCGTTGCACGGATACTTCA 60.038 50.000 10.02 0.00 42.82 3.02
463 469 3.006430 TGCACGGATACTTCAGAAGTTGA 59.994 43.478 21.05 4.64 42.81 3.18
468 474 4.109050 GGATACTTCAGAAGTTGAGAGCG 58.891 47.826 21.05 0.00 42.81 5.03
472 478 1.502231 TCAGAAGTTGAGAGCGCAAC 58.498 50.000 11.47 5.00 46.47 4.17
493 499 0.674581 GTTAACCTGGGGGTACGCAC 60.675 60.000 12.45 8.96 46.67 5.34
506 512 2.475864 GGTACGCACGATGTTTGTTGTA 59.524 45.455 0.00 0.00 0.00 2.41
507 513 3.059733 GGTACGCACGATGTTTGTTGTAA 60.060 43.478 0.00 0.00 0.00 2.41
551 557 3.484407 GATGGAATGGAATCACTGAGGG 58.516 50.000 0.00 0.00 0.00 4.30
628 634 5.048713 CCTTGCCGTTTCTCAAAGATTTACT 60.049 40.000 0.00 0.00 0.00 2.24
642 676 9.554395 TCAAAGATTTACTGTTTGACATACTGA 57.446 29.630 9.33 0.00 40.94 3.41
645 680 8.902540 AGATTTACTGTTTGACATACTGACAA 57.097 30.769 9.33 3.24 30.83 3.18
654 689 8.075574 TGTTTGACATACTGACAACAATCAATC 58.924 33.333 0.00 0.00 32.32 2.67
662 697 3.253921 TGACAACAATCAATCACTGCCAG 59.746 43.478 0.00 0.00 0.00 4.85
663 698 2.029649 ACAACAATCAATCACTGCCAGC 60.030 45.455 0.00 0.00 0.00 4.85
686 758 6.096001 AGCCTTGGCAAGTAATCTTTTATCAG 59.904 38.462 24.57 6.29 0.00 2.90
755 827 2.023984 TCCTCTCCAGCTCTCCAATACA 60.024 50.000 0.00 0.00 0.00 2.29
757 829 3.244146 CCTCTCCAGCTCTCCAATACATG 60.244 52.174 0.00 0.00 0.00 3.21
794 866 5.692115 TTCCATATACTTGGTGCAGAAGA 57.308 39.130 11.53 0.00 38.01 2.87
905 1030 3.256631 GCCCAATTCATCTCGCCATTAAT 59.743 43.478 0.00 0.00 0.00 1.40
906 1031 4.262164 GCCCAATTCATCTCGCCATTAATT 60.262 41.667 0.00 0.00 0.00 1.40
907 1032 5.048083 GCCCAATTCATCTCGCCATTAATTA 60.048 40.000 0.00 0.00 0.00 1.40
968 1103 0.179181 CATAACAGCAGCAGCAACCG 60.179 55.000 3.17 0.00 45.49 4.44
1038 1634 1.535462 GTATCTCTCGCTCTCCTGCTC 59.465 57.143 0.00 0.00 0.00 4.26
1041 1637 2.047151 CTCTCGCTCTCCTGCTCGTC 62.047 65.000 0.00 0.00 0.00 4.20
1152 2111 4.446413 GGGTCGCCGTTCCACGAT 62.446 66.667 0.00 0.00 46.05 3.73
1699 3251 2.367202 GGCTCCTTCATCGGGGACA 61.367 63.158 0.00 0.00 30.58 4.02
2145 3803 1.666234 GATCGCAGCGAAGATCCCC 60.666 63.158 23.76 1.60 39.99 4.81
2525 4257 5.813672 TGTAGCCATAAATCTGTAAACCGTC 59.186 40.000 0.00 0.00 0.00 4.79
2531 4263 6.537301 CCATAAATCTGTAAACCGTCTGCTTA 59.463 38.462 0.00 0.00 0.00 3.09
2611 4344 1.982913 GTTTATTTTCTTGTGGCCGCG 59.017 47.619 12.58 0.00 0.00 6.46
2624 4357 2.153945 GCCGCGTGCATCAACATTG 61.154 57.895 13.61 0.00 40.77 2.82
2625 4358 1.209898 CCGCGTGCATCAACATTGT 59.790 52.632 4.92 0.00 0.00 2.71
2626 4359 1.066656 CCGCGTGCATCAACATTGTG 61.067 55.000 4.92 0.00 0.00 3.33
2627 4360 0.110283 CGCGTGCATCAACATTGTGA 60.110 50.000 0.00 0.00 0.00 3.58
2628 4361 1.662592 CGCGTGCATCAACATTGTGAA 60.663 47.619 0.00 0.00 0.00 3.18
2629 4362 2.392821 GCGTGCATCAACATTGTGAAA 58.607 42.857 0.00 0.00 0.00 2.69
2630 4363 2.153627 GCGTGCATCAACATTGTGAAAC 59.846 45.455 0.00 0.00 37.35 2.78
2631 4364 2.725723 CGTGCATCAACATTGTGAAACC 59.274 45.455 0.00 0.00 34.36 3.27
2632 4365 3.715495 GTGCATCAACATTGTGAAACCA 58.285 40.909 0.00 0.00 34.36 3.67
2633 4366 4.118410 GTGCATCAACATTGTGAAACCAA 58.882 39.130 0.00 0.00 34.36 3.67
2634 4367 4.569966 GTGCATCAACATTGTGAAACCAAA 59.430 37.500 0.00 0.00 34.36 3.28
2635 4368 5.064452 GTGCATCAACATTGTGAAACCAAAA 59.936 36.000 0.00 0.00 34.36 2.44
2636 4369 5.064452 TGCATCAACATTGTGAAACCAAAAC 59.936 36.000 0.00 0.00 34.36 2.43
2637 4370 5.064452 GCATCAACATTGTGAAACCAAAACA 59.936 36.000 0.00 0.00 34.36 2.83
2638 4371 6.402983 GCATCAACATTGTGAAACCAAAACAA 60.403 34.615 0.00 0.00 38.13 2.83
2639 4372 7.524912 CATCAACATTGTGAAACCAAAACAAA 58.475 30.769 0.00 0.00 37.36 2.83
2640 4373 6.892691 TCAACATTGTGAAACCAAAACAAAC 58.107 32.000 0.00 0.00 37.36 2.93
2641 4374 6.483307 TCAACATTGTGAAACCAAAACAAACA 59.517 30.769 0.00 0.00 37.36 2.83
2642 4375 7.173907 TCAACATTGTGAAACCAAAACAAACAT 59.826 29.630 0.00 0.00 37.36 2.71
2643 4376 7.446001 ACATTGTGAAACCAAAACAAACATT 57.554 28.000 0.00 0.00 37.36 2.71
2644 4377 7.525759 ACATTGTGAAACCAAAACAAACATTC 58.474 30.769 0.00 0.00 37.36 2.67
2645 4378 7.390162 ACATTGTGAAACCAAAACAAACATTCT 59.610 29.630 0.00 0.00 37.36 2.40
2646 4379 8.877779 CATTGTGAAACCAAAACAAACATTCTA 58.122 29.630 0.00 0.00 37.36 2.10
2647 4380 8.833231 TTGTGAAACCAAAACAAACATTCTAA 57.167 26.923 0.00 0.00 34.36 2.10
2648 4381 8.833231 TGTGAAACCAAAACAAACATTCTAAA 57.167 26.923 0.00 0.00 34.36 1.85
2649 4382 9.273016 TGTGAAACCAAAACAAACATTCTAAAA 57.727 25.926 0.00 0.00 34.36 1.52
2691 4424 3.636153 AAAAGGGTGTGGCTAGATCTC 57.364 47.619 0.00 0.00 0.00 2.75
2692 4425 2.254152 AAGGGTGTGGCTAGATCTCA 57.746 50.000 0.00 0.00 0.00 3.27
2693 4426 1.786937 AGGGTGTGGCTAGATCTCAG 58.213 55.000 0.00 0.00 0.00 3.35
2694 4427 1.007721 AGGGTGTGGCTAGATCTCAGT 59.992 52.381 0.00 0.00 0.00 3.41
2695 4428 1.410882 GGGTGTGGCTAGATCTCAGTC 59.589 57.143 0.00 0.00 0.00 3.51
2696 4429 1.066303 GGTGTGGCTAGATCTCAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
2697 4430 2.017782 GTGTGGCTAGATCTCAGTCGA 58.982 52.381 0.00 0.00 0.00 4.20
2698 4431 2.017782 TGTGGCTAGATCTCAGTCGAC 58.982 52.381 7.70 7.70 0.00 4.20
2699 4432 2.294074 GTGGCTAGATCTCAGTCGACT 58.706 52.381 13.58 13.58 0.00 4.18
2700 4433 2.032799 GTGGCTAGATCTCAGTCGACTG 59.967 54.545 34.76 34.76 45.08 3.51
2714 4447 6.158175 CAGTCGACTGAGATTTTAACCAAG 57.842 41.667 36.73 6.86 46.59 3.61
2715 4448 5.696724 CAGTCGACTGAGATTTTAACCAAGT 59.303 40.000 36.73 0.00 46.59 3.16
2716 4449 5.927115 AGTCGACTGAGATTTTAACCAAGTC 59.073 40.000 19.30 0.00 0.00 3.01
2717 4450 5.927115 GTCGACTGAGATTTTAACCAAGTCT 59.073 40.000 8.70 0.00 0.00 3.24
2718 4451 6.424207 GTCGACTGAGATTTTAACCAAGTCTT 59.576 38.462 8.70 0.00 0.00 3.01
2719 4452 7.597743 GTCGACTGAGATTTTAACCAAGTCTTA 59.402 37.037 8.70 0.00 0.00 2.10
2720 4453 7.813148 TCGACTGAGATTTTAACCAAGTCTTAG 59.187 37.037 0.00 0.00 0.00 2.18
2721 4454 7.599245 CGACTGAGATTTTAACCAAGTCTTAGT 59.401 37.037 4.78 4.78 38.13 2.24
2722 4455 8.834749 ACTGAGATTTTAACCAAGTCTTAGTC 57.165 34.615 0.00 0.00 32.41 2.59
2723 4456 8.429641 ACTGAGATTTTAACCAAGTCTTAGTCA 58.570 33.333 0.00 0.00 32.41 3.41
2724 4457 9.273016 CTGAGATTTTAACCAAGTCTTAGTCAA 57.727 33.333 0.00 0.00 0.00 3.18
2725 4458 9.273016 TGAGATTTTAACCAAGTCTTAGTCAAG 57.727 33.333 0.00 0.00 0.00 3.02
2726 4459 9.274206 GAGATTTTAACCAAGTCTTAGTCAAGT 57.726 33.333 0.00 0.00 33.20 3.16
2727 4460 9.057089 AGATTTTAACCAAGTCTTAGTCAAGTG 57.943 33.333 0.00 0.00 33.20 3.16
2728 4461 6.613755 TTTAACCAAGTCTTAGTCAAGTGC 57.386 37.500 0.00 0.00 33.20 4.40
2729 4462 4.423625 AACCAAGTCTTAGTCAAGTGCT 57.576 40.909 0.00 0.00 33.20 4.40
2730 4463 5.546621 AACCAAGTCTTAGTCAAGTGCTA 57.453 39.130 0.00 0.00 33.20 3.49
2731 4464 5.746990 ACCAAGTCTTAGTCAAGTGCTAT 57.253 39.130 0.00 0.00 33.20 2.97
2732 4465 6.852420 ACCAAGTCTTAGTCAAGTGCTATA 57.148 37.500 0.00 0.00 33.20 1.31
2733 4466 7.241042 ACCAAGTCTTAGTCAAGTGCTATAA 57.759 36.000 0.00 0.00 33.20 0.98
2734 4467 7.097834 ACCAAGTCTTAGTCAAGTGCTATAAC 58.902 38.462 0.00 0.00 33.20 1.89
2735 4468 7.097192 CCAAGTCTTAGTCAAGTGCTATAACA 58.903 38.462 0.00 0.00 33.20 2.41
2736 4469 7.766278 CCAAGTCTTAGTCAAGTGCTATAACAT 59.234 37.037 0.00 0.00 33.20 2.71
2737 4470 8.598924 CAAGTCTTAGTCAAGTGCTATAACATG 58.401 37.037 0.00 0.00 33.20 3.21
2738 4471 7.841956 AGTCTTAGTCAAGTGCTATAACATGT 58.158 34.615 0.00 0.00 33.20 3.21
2739 4472 8.967918 AGTCTTAGTCAAGTGCTATAACATGTA 58.032 33.333 0.00 0.00 33.20 2.29
2740 4473 9.021863 GTCTTAGTCAAGTGCTATAACATGTAC 57.978 37.037 0.00 0.00 33.20 2.90
2741 4474 7.913821 TCTTAGTCAAGTGCTATAACATGTACG 59.086 37.037 0.00 0.00 33.20 3.67
2742 4475 6.203808 AGTCAAGTGCTATAACATGTACGA 57.796 37.500 0.00 0.00 0.00 3.43
2743 4476 6.627243 AGTCAAGTGCTATAACATGTACGAA 58.373 36.000 0.00 0.00 0.00 3.85
2744 4477 7.094631 AGTCAAGTGCTATAACATGTACGAAA 58.905 34.615 0.00 0.00 0.00 3.46
2745 4478 7.275779 AGTCAAGTGCTATAACATGTACGAAAG 59.724 37.037 0.00 0.00 0.00 2.62
2746 4479 7.274904 GTCAAGTGCTATAACATGTACGAAAGA 59.725 37.037 0.00 0.00 0.00 2.52
2747 4480 7.815549 TCAAGTGCTATAACATGTACGAAAGAA 59.184 33.333 0.00 0.00 0.00 2.52
2748 4481 8.440059 CAAGTGCTATAACATGTACGAAAGAAA 58.560 33.333 0.00 0.00 0.00 2.52
2749 4482 8.542497 AGTGCTATAACATGTACGAAAGAAAA 57.458 30.769 0.00 0.00 0.00 2.29
2750 4483 8.995220 AGTGCTATAACATGTACGAAAGAAAAA 58.005 29.630 0.00 0.00 0.00 1.94
2788 4521 8.737168 AAAAATCCATGAATCTCGACATAAGA 57.263 30.769 0.00 0.00 0.00 2.10
2789 4522 8.915057 AAAATCCATGAATCTCGACATAAGAT 57.085 30.769 0.00 0.00 34.96 2.40
2790 4523 8.545229 AAATCCATGAATCTCGACATAAGATC 57.455 34.615 0.00 0.00 32.29 2.75
2791 4524 6.907853 TCCATGAATCTCGACATAAGATCT 57.092 37.500 0.00 0.00 32.29 2.75
2792 4525 8.586879 ATCCATGAATCTCGACATAAGATCTA 57.413 34.615 0.00 0.00 32.29 1.98
2793 4526 8.409358 TCCATGAATCTCGACATAAGATCTAA 57.591 34.615 0.00 0.00 32.29 2.10
2794 4527 9.029368 TCCATGAATCTCGACATAAGATCTAAT 57.971 33.333 0.00 0.00 32.29 1.73
2795 4528 9.085250 CCATGAATCTCGACATAAGATCTAATG 57.915 37.037 0.00 0.00 32.29 1.90
2796 4529 9.852091 CATGAATCTCGACATAAGATCTAATGA 57.148 33.333 0.00 0.00 32.29 2.57
2811 4544 9.800433 AAGATCTAATGAATATAGCATCGACTG 57.200 33.333 0.00 0.00 0.00 3.51
2812 4545 9.183368 AGATCTAATGAATATAGCATCGACTGA 57.817 33.333 0.00 0.00 0.00 3.41
2813 4546 9.449550 GATCTAATGAATATAGCATCGACTGAG 57.550 37.037 0.00 0.00 0.00 3.35
2814 4547 8.567285 TCTAATGAATATAGCATCGACTGAGA 57.433 34.615 0.00 0.00 0.00 3.27
2815 4548 8.454894 TCTAATGAATATAGCATCGACTGAGAC 58.545 37.037 0.00 0.00 0.00 3.36
2816 4549 6.581171 ATGAATATAGCATCGACTGAGACA 57.419 37.500 0.00 0.00 0.00 3.41
2817 4550 6.581171 TGAATATAGCATCGACTGAGACAT 57.419 37.500 0.00 0.00 0.00 3.06
2818 4551 7.687941 TGAATATAGCATCGACTGAGACATA 57.312 36.000 0.00 0.00 0.00 2.29
2819 4552 8.110860 TGAATATAGCATCGACTGAGACATAA 57.889 34.615 0.00 0.00 0.00 1.90
2820 4553 8.743714 TGAATATAGCATCGACTGAGACATAAT 58.256 33.333 0.00 0.00 0.00 1.28
2821 4554 9.232082 GAATATAGCATCGACTGAGACATAATC 57.768 37.037 0.00 0.00 0.00 1.75
2822 4555 4.926140 AGCATCGACTGAGACATAATCA 57.074 40.909 0.00 0.00 0.00 2.57
2823 4556 5.268118 AGCATCGACTGAGACATAATCAA 57.732 39.130 0.00 0.00 0.00 2.57
2824 4557 5.288015 AGCATCGACTGAGACATAATCAAG 58.712 41.667 0.00 0.00 0.00 3.02
2825 4558 5.046529 GCATCGACTGAGACATAATCAAGT 58.953 41.667 0.00 0.00 31.11 3.16
2826 4559 5.174761 GCATCGACTGAGACATAATCAAGTC 59.825 44.000 0.00 0.00 38.79 3.01
2833 4566 4.657436 AGACATAATCAAGTCTCGGGAC 57.343 45.455 7.56 7.56 40.96 4.46
2845 4578 4.406001 GTCTCGGGACTGAAAATTGTTC 57.594 45.455 8.58 0.00 39.24 3.18
2846 4579 4.065789 GTCTCGGGACTGAAAATTGTTCT 58.934 43.478 8.58 0.00 39.24 3.01
2847 4580 4.152580 GTCTCGGGACTGAAAATTGTTCTC 59.847 45.833 8.58 0.00 39.24 2.87
2848 4581 3.408634 TCGGGACTGAAAATTGTTCTCC 58.591 45.455 0.00 0.00 0.00 3.71
2849 4582 2.159627 CGGGACTGAAAATTGTTCTCCG 59.840 50.000 0.00 0.00 0.00 4.63
2850 4583 3.146847 GGGACTGAAAATTGTTCTCCGT 58.853 45.455 0.00 0.00 0.00 4.69
2851 4584 4.320870 GGGACTGAAAATTGTTCTCCGTA 58.679 43.478 0.00 0.00 0.00 4.02
2852 4585 4.153655 GGGACTGAAAATTGTTCTCCGTAC 59.846 45.833 0.00 0.00 0.00 3.67
2853 4586 4.153655 GGACTGAAAATTGTTCTCCGTACC 59.846 45.833 0.00 0.00 0.00 3.34
2854 4587 4.070009 ACTGAAAATTGTTCTCCGTACCC 58.930 43.478 0.00 0.00 0.00 3.69
2855 4588 3.414269 TGAAAATTGTTCTCCGTACCCC 58.586 45.455 0.00 0.00 0.00 4.95
2856 4589 2.502142 AAATTGTTCTCCGTACCCCC 57.498 50.000 0.00 0.00 0.00 5.40
2883 4616 4.317444 CCACACCCCGCGGTTGTA 62.317 66.667 26.12 0.00 42.04 2.41
2884 4617 2.046700 CACACCCCGCGGTTGTAT 60.047 61.111 26.12 7.28 42.04 2.29
2885 4618 1.673009 CACACCCCGCGGTTGTATT 60.673 57.895 26.12 8.34 42.04 1.89
2886 4619 1.673009 ACACCCCGCGGTTGTATTG 60.673 57.895 26.12 13.21 42.04 1.90
2887 4620 1.376166 CACCCCGCGGTTGTATTGA 60.376 57.895 26.12 0.00 42.04 2.57
2888 4621 1.376295 ACCCCGCGGTTGTATTGAC 60.376 57.895 26.12 0.00 40.58 3.18
2889 4622 1.376166 CCCCGCGGTTGTATTGACA 60.376 57.895 26.12 0.00 0.00 3.58
2890 4623 0.746563 CCCCGCGGTTGTATTGACAT 60.747 55.000 26.12 0.00 34.86 3.06
2891 4624 0.376852 CCCGCGGTTGTATTGACATG 59.623 55.000 26.12 0.00 34.86 3.21
2892 4625 0.248054 CCGCGGTTGTATTGACATGC 60.248 55.000 19.50 0.00 34.86 4.06
2893 4626 0.586256 CGCGGTTGTATTGACATGCG 60.586 55.000 0.00 5.79 42.00 4.73
2894 4627 0.861450 GCGGTTGTATTGACATGCGC 60.861 55.000 0.00 0.00 34.86 6.09
2895 4628 0.445829 CGGTTGTATTGACATGCGCA 59.554 50.000 14.96 14.96 34.86 6.09
2896 4629 1.790123 CGGTTGTATTGACATGCGCAC 60.790 52.381 14.90 0.00 34.86 5.34
2897 4630 1.468520 GGTTGTATTGACATGCGCACT 59.531 47.619 14.90 0.00 34.86 4.40
2898 4631 2.476185 GGTTGTATTGACATGCGCACTC 60.476 50.000 14.90 11.51 34.86 3.51
2899 4632 1.368641 TGTATTGACATGCGCACTCC 58.631 50.000 14.90 4.82 0.00 3.85
2900 4633 0.657840 GTATTGACATGCGCACTCCC 59.342 55.000 14.90 2.69 0.00 4.30
2901 4634 0.541392 TATTGACATGCGCACTCCCT 59.459 50.000 14.90 0.00 0.00 4.20
2902 4635 0.745845 ATTGACATGCGCACTCCCTC 60.746 55.000 14.90 3.26 0.00 4.30
2903 4636 2.512515 GACATGCGCACTCCCTCC 60.513 66.667 14.90 0.00 0.00 4.30
2904 4637 3.005539 ACATGCGCACTCCCTCCT 61.006 61.111 14.90 0.00 0.00 3.69
2905 4638 1.676678 GACATGCGCACTCCCTCCTA 61.677 60.000 14.90 0.00 0.00 2.94
2906 4639 1.264749 ACATGCGCACTCCCTCCTAA 61.265 55.000 14.90 0.00 0.00 2.69
2907 4640 0.107456 CATGCGCACTCCCTCCTAAT 59.893 55.000 14.90 0.00 0.00 1.73
2908 4641 1.344438 CATGCGCACTCCCTCCTAATA 59.656 52.381 14.90 0.00 0.00 0.98
2909 4642 1.491668 TGCGCACTCCCTCCTAATAA 58.508 50.000 5.66 0.00 0.00 1.40
2910 4643 2.047061 TGCGCACTCCCTCCTAATAAT 58.953 47.619 5.66 0.00 0.00 1.28
2911 4644 3.236047 TGCGCACTCCCTCCTAATAATA 58.764 45.455 5.66 0.00 0.00 0.98
2912 4645 3.006537 TGCGCACTCCCTCCTAATAATAC 59.993 47.826 5.66 0.00 0.00 1.89
2913 4646 3.006537 GCGCACTCCCTCCTAATAATACA 59.993 47.826 0.30 0.00 0.00 2.29
2914 4647 4.322801 GCGCACTCCCTCCTAATAATACAT 60.323 45.833 0.30 0.00 0.00 2.29
2915 4648 5.411781 CGCACTCCCTCCTAATAATACATC 58.588 45.833 0.00 0.00 0.00 3.06
2916 4649 5.047306 CGCACTCCCTCCTAATAATACATCA 60.047 44.000 0.00 0.00 0.00 3.07
2917 4650 6.518369 CGCACTCCCTCCTAATAATACATCAA 60.518 42.308 0.00 0.00 0.00 2.57
2918 4651 7.224297 GCACTCCCTCCTAATAATACATCAAA 58.776 38.462 0.00 0.00 0.00 2.69
2919 4652 7.719633 GCACTCCCTCCTAATAATACATCAAAA 59.280 37.037 0.00 0.00 0.00 2.44
2920 4653 9.277783 CACTCCCTCCTAATAATACATCAAAAG 57.722 37.037 0.00 0.00 0.00 2.27
2921 4654 9.225682 ACTCCCTCCTAATAATACATCAAAAGA 57.774 33.333 0.00 0.00 0.00 2.52
2985 4811 4.081642 ACCTCACTACGTATGCACAAAGAT 60.082 41.667 0.00 0.00 0.00 2.40
2994 4820 1.533625 TGCACAAAGATGGTGGCTAC 58.466 50.000 0.00 0.00 36.76 3.58
2995 4821 1.202867 TGCACAAAGATGGTGGCTACA 60.203 47.619 1.52 0.00 36.76 2.74
2997 4823 2.493278 GCACAAAGATGGTGGCTACATT 59.507 45.455 1.52 0.00 36.76 2.71
3011 4837 2.237392 GCTACATTCCTCCTTCAGTGGT 59.763 50.000 0.00 0.00 0.00 4.16
3032 4858 2.708861 TCTCTAGGGCAACAAACTCCAA 59.291 45.455 0.00 0.00 39.74 3.53
3039 4865 2.548493 GGCAACAAACTCCAATGCACAT 60.548 45.455 0.00 0.00 38.73 3.21
3058 4884 3.242804 ACATGCTGCATTGCAAACAAAAC 60.243 39.130 13.38 0.00 46.61 2.43
3090 4916 6.529463 AAAAACAACATAGCAACAATCAGC 57.471 33.333 0.00 0.00 0.00 4.26
3096 4922 4.948847 ACATAGCAACAATCAGCGAGATA 58.051 39.130 0.00 0.00 35.39 1.98
3105 4931 1.557099 TCAGCGAGATACCCACTGTT 58.443 50.000 0.00 0.00 0.00 3.16
3125 4951 4.892934 TGTTCTTACAAGTTGGATTTGGCT 59.107 37.500 7.96 0.00 0.00 4.75
3168 4995 1.299976 GGGTACTGAGGCAGTTGGG 59.700 63.158 5.31 0.00 42.59 4.12
3202 6173 6.770286 AGTGGATAAACTGGGTGATGATAT 57.230 37.500 0.00 0.00 0.00 1.63
3213 6184 5.753716 TGGGTGATGATATGTGTCAAATCA 58.246 37.500 0.00 0.00 34.35 2.57
3216 6187 6.017605 GGGTGATGATATGTGTCAAATCAGTC 60.018 42.308 0.00 0.00 33.40 3.51
3225 6196 4.035091 TGTGTCAAATCAGTCACCTTTTCG 59.965 41.667 0.00 0.00 0.00 3.46
3230 6201 2.992124 TCAGTCACCTTTTCGGTCAA 57.008 45.000 0.00 0.00 44.93 3.18
3236 6207 4.036380 AGTCACCTTTTCGGTCAAATGTTC 59.964 41.667 0.00 0.00 44.93 3.18
3238 6209 5.237779 GTCACCTTTTCGGTCAAATGTTCTA 59.762 40.000 0.00 0.00 44.93 2.10
3247 6218 3.226347 GTCAAATGTTCTAGCGTGTTGC 58.774 45.455 0.00 0.00 46.98 4.17
3267 6238 0.597568 CGAATGCTTTTGAGCCCACA 59.402 50.000 0.00 0.00 0.00 4.17
3281 6252 1.847968 CCACAAGGGGTCTGGGACT 60.848 63.158 0.00 0.00 32.47 3.85
3287 6258 4.348495 GGGTCTGGGACTGGGGGA 62.348 72.222 0.00 0.00 32.47 4.81
3295 6267 3.866582 GACTGGGGGATCCGCTGG 61.867 72.222 26.34 20.33 39.13 4.85
3319 6291 5.163131 GGCCCCTACCTATTCTTATTTGTGA 60.163 44.000 0.00 0.00 0.00 3.58
3321 6293 6.296803 CCCCTACCTATTCTTATTTGTGACC 58.703 44.000 0.00 0.00 0.00 4.02
3357 6336 7.342284 TCCACTTTACTACAAAGAGAGATAGGG 59.658 40.741 3.87 0.00 0.00 3.53
3358 6337 7.124448 CCACTTTACTACAAAGAGAGATAGGGT 59.876 40.741 3.87 0.00 0.00 4.34
3395 6374 2.300437 CCCTAAAAATTGCCCGTGGAAA 59.700 45.455 0.00 0.00 0.00 3.13
3408 6387 1.067071 CGTGGAAACCCTAGTGTCTCC 60.067 57.143 0.00 0.00 30.17 3.71
3422 6401 3.823304 AGTGTCTCCAATCTCCTTTTTGC 59.177 43.478 0.00 0.00 0.00 3.68
3459 6448 2.668212 CCGCCGACCAAGCAAGAA 60.668 61.111 0.00 0.00 0.00 2.52
3474 6463 6.071503 CCAAGCAAGAAAGATCAAGGAAATCT 60.072 38.462 0.00 0.00 34.96 2.40
3482 6471 9.447157 AGAAAGATCAAGGAAATCTTAGAACTG 57.553 33.333 0.00 0.00 41.47 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.120086 AACACCGCTTCTGCACCCT 62.120 57.895 0.00 0.00 39.64 4.34
19 20 2.675317 GCTACTCATCAACACCGCTTCT 60.675 50.000 0.00 0.00 0.00 2.85
25 26 4.507710 TGAATCTGCTACTCATCAACACC 58.492 43.478 0.00 0.00 0.00 4.16
33 34 4.040339 TCACCAACTTGAATCTGCTACTCA 59.960 41.667 0.00 0.00 0.00 3.41
72 73 2.819595 CGTCCATCAACCGGCAGG 60.820 66.667 0.00 0.00 45.13 4.85
73 74 2.819595 CCGTCCATCAACCGGCAG 60.820 66.667 0.00 0.00 34.62 4.85
89 90 4.251103 AGATTTCCCATGGTTAACTCCC 57.749 45.455 11.73 0.00 0.00 4.30
113 114 2.341846 TCAGGCTTTCCGACACTTTT 57.658 45.000 0.00 0.00 37.47 2.27
120 121 2.631160 TCACTTTTCAGGCTTTCCGA 57.369 45.000 0.00 0.00 37.47 4.55
128 129 4.818546 TCTCTCAGCTTTTCACTTTTCAGG 59.181 41.667 0.00 0.00 0.00 3.86
135 136 5.736951 ATGTACTCTCTCAGCTTTTCACT 57.263 39.130 0.00 0.00 0.00 3.41
138 140 7.093992 ACAACTATGTACTCTCTCAGCTTTTC 58.906 38.462 0.00 0.00 38.24 2.29
158 160 6.650807 CACTGAACACCACAAGATATACAACT 59.349 38.462 0.00 0.00 0.00 3.16
160 162 5.411361 GCACTGAACACCACAAGATATACAA 59.589 40.000 0.00 0.00 0.00 2.41
168 170 1.093972 TGTGCACTGAACACCACAAG 58.906 50.000 19.41 0.00 37.22 3.16
169 171 1.404748 CATGTGCACTGAACACCACAA 59.595 47.619 19.41 0.00 41.02 3.33
208 210 7.094720 GCTATAGCACTTCGTCTCCTTCTATAA 60.095 40.741 20.01 0.00 41.59 0.98
209 211 6.372103 GCTATAGCACTTCGTCTCCTTCTATA 59.628 42.308 20.01 0.00 41.59 1.31
210 212 5.182380 GCTATAGCACTTCGTCTCCTTCTAT 59.818 44.000 20.01 0.00 41.59 1.98
211 213 4.515944 GCTATAGCACTTCGTCTCCTTCTA 59.484 45.833 20.01 0.00 41.59 2.10
212 214 3.316868 GCTATAGCACTTCGTCTCCTTCT 59.683 47.826 20.01 0.00 41.59 2.85
213 215 3.634283 GCTATAGCACTTCGTCTCCTTC 58.366 50.000 20.01 0.00 41.59 3.46
215 217 1.604755 CGCTATAGCACTTCGTCTCCT 59.395 52.381 23.99 0.00 42.21 3.69
217 219 3.058846 TCATCGCTATAGCACTTCGTCTC 60.059 47.826 23.99 0.00 42.21 3.36
218 220 2.879026 TCATCGCTATAGCACTTCGTCT 59.121 45.455 23.99 0.00 42.21 4.18
220 222 2.879026 TCTCATCGCTATAGCACTTCGT 59.121 45.455 23.99 0.65 42.21 3.85
223 225 4.862902 ATGTCTCATCGCTATAGCACTT 57.137 40.909 23.99 8.96 42.21 3.16
235 237 6.821160 TCGGATAGTCTCTGATATGTCTCATC 59.179 42.308 0.00 0.00 34.19 2.92
236 238 6.716284 TCGGATAGTCTCTGATATGTCTCAT 58.284 40.000 0.00 0.00 34.19 2.90
239 241 7.721842 TCTTTTCGGATAGTCTCTGATATGTCT 59.278 37.037 0.00 0.00 39.06 3.41
245 247 5.450453 TCCTCTTTTCGGATAGTCTCTGAT 58.550 41.667 0.00 0.00 39.06 2.90
246 248 4.856509 TCCTCTTTTCGGATAGTCTCTGA 58.143 43.478 0.00 0.00 37.49 3.27
260 262 1.880027 GCGGTTGTGTCATCCTCTTTT 59.120 47.619 0.00 0.00 0.00 2.27
261 263 1.523758 GCGGTTGTGTCATCCTCTTT 58.476 50.000 0.00 0.00 0.00 2.52
268 271 1.876799 TCAAAATCGCGGTTGTGTCAT 59.123 42.857 21.22 0.00 0.00 3.06
272 275 1.262950 TGAGTCAAAATCGCGGTTGTG 59.737 47.619 16.39 16.39 0.00 3.33
278 281 1.798223 TCACCTTGAGTCAAAATCGCG 59.202 47.619 7.06 0.00 0.00 5.87
283 286 4.144297 CCCAATCTCACCTTGAGTCAAAA 58.856 43.478 7.06 0.00 44.58 2.44
292 295 3.266772 TCATAGTTGCCCAATCTCACCTT 59.733 43.478 0.00 0.00 0.00 3.50
293 296 2.846206 TCATAGTTGCCCAATCTCACCT 59.154 45.455 0.00 0.00 0.00 4.00
299 302 5.859205 AGGAATTTCATAGTTGCCCAATC 57.141 39.130 0.00 0.00 0.00 2.67
301 304 5.083122 TGAAGGAATTTCATAGTTGCCCAA 58.917 37.500 0.00 0.00 40.82 4.12
302 305 4.671831 TGAAGGAATTTCATAGTTGCCCA 58.328 39.130 0.00 0.00 40.82 5.36
307 310 9.354673 TCTGAAACTTGAAGGAATTTCATAGTT 57.645 29.630 9.09 0.00 44.90 2.24
310 313 8.690203 TGTCTGAAACTTGAAGGAATTTCATA 57.310 30.769 9.09 1.90 44.90 2.15
311 314 7.503566 TCTGTCTGAAACTTGAAGGAATTTCAT 59.496 33.333 9.09 0.00 44.90 2.57
336 339 0.721718 CTCGCCCGTTCTTGATTGTC 59.278 55.000 0.00 0.00 0.00 3.18
337 340 0.673644 CCTCGCCCGTTCTTGATTGT 60.674 55.000 0.00 0.00 0.00 2.71
340 343 0.974010 TACCCTCGCCCGTTCTTGAT 60.974 55.000 0.00 0.00 0.00 2.57
354 357 2.027385 GTTACCCGAACTCGATACCCT 58.973 52.381 0.00 0.00 43.02 4.34
355 358 2.027385 AGTTACCCGAACTCGATACCC 58.973 52.381 0.00 0.00 45.81 3.69
368 371 5.899631 TTGGACCCATATAAGAGTTACCC 57.100 43.478 0.00 0.00 0.00 3.69
384 387 3.395639 TGAACAAGTCACGTATTGGACC 58.604 45.455 10.83 0.00 34.58 4.46
393 399 4.289342 TGCATGAAAATGAACAAGTCACG 58.711 39.130 0.00 0.00 39.72 4.35
395 401 8.959548 ACTATATGCATGAAAATGAACAAGTCA 58.040 29.630 10.16 0.00 41.67 3.41
398 404 9.961265 ATCACTATATGCATGAAAATGAACAAG 57.039 29.630 10.16 0.00 0.00 3.16
416 422 5.298527 ACGCTAGCACACACTAATCACTATA 59.701 40.000 16.45 0.00 0.00 1.31
425 431 0.032815 TGCAACGCTAGCACACACTA 59.967 50.000 16.45 0.00 37.02 2.74
426 432 1.227527 TGCAACGCTAGCACACACT 60.228 52.632 16.45 0.00 37.02 3.55
442 448 3.585862 TCAACTTCTGAAGTATCCGTGC 58.414 45.455 22.30 0.00 41.91 5.34
443 449 5.060662 TCTCAACTTCTGAAGTATCCGTG 57.939 43.478 22.30 16.13 41.91 4.94
450 456 1.069204 TGCGCTCTCAACTTCTGAAGT 59.931 47.619 17.00 17.00 45.46 3.01
453 459 1.502231 GTTGCGCTCTCAACTTCTGA 58.498 50.000 9.73 0.00 42.15 3.27
463 469 1.512926 CAGGTTAACAGTTGCGCTCT 58.487 50.000 9.73 4.18 0.00 4.09
468 474 2.653557 CCCCCAGGTTAACAGTTGC 58.346 57.895 8.10 0.00 0.00 4.17
551 557 7.448748 TTCTTAAGCTTCCATTTGTTCTACC 57.551 36.000 0.00 0.00 0.00 3.18
628 634 6.934048 TGATTGTTGTCAGTATGTCAAACA 57.066 33.333 0.00 0.00 45.03 2.83
642 676 2.029649 GCTGGCAGTGATTGATTGTTGT 60.030 45.455 17.16 0.00 0.00 3.32
645 680 1.180029 GGCTGGCAGTGATTGATTGT 58.820 50.000 17.16 0.00 0.00 2.71
662 697 6.207691 TGATAAAAGATTACTTGCCAAGGC 57.792 37.500 9.64 3.61 42.35 4.35
663 698 6.603201 TCCTGATAAAAGATTACTTGCCAAGG 59.397 38.462 9.64 0.00 36.39 3.61
779 851 8.405531 GCATTTAATTATCTTCTGCACCAAGTA 58.594 33.333 1.47 0.00 0.00 2.24
780 852 7.260603 GCATTTAATTATCTTCTGCACCAAGT 58.739 34.615 1.47 0.00 0.00 3.16
781 853 6.415867 CGCATTTAATTATCTTCTGCACCAAG 59.584 38.462 0.00 0.00 0.00 3.61
782 854 6.264832 CGCATTTAATTATCTTCTGCACCAA 58.735 36.000 0.00 0.00 0.00 3.67
830 906 4.755411 TGATTGTTGACGAATACTCCCTC 58.245 43.478 0.00 0.00 0.00 4.30
832 908 3.309954 GCTGATTGTTGACGAATACTCCC 59.690 47.826 0.00 0.00 0.00 4.30
833 909 3.932710 TGCTGATTGTTGACGAATACTCC 59.067 43.478 0.00 0.00 0.00 3.85
834 910 4.627467 AGTGCTGATTGTTGACGAATACTC 59.373 41.667 0.00 0.00 0.00 2.59
835 911 4.569943 AGTGCTGATTGTTGACGAATACT 58.430 39.130 0.00 0.00 0.00 2.12
836 912 4.928661 AGTGCTGATTGTTGACGAATAC 57.071 40.909 0.00 0.00 0.00 1.89
873 949 2.905415 TGAATTGGGCAAGTCAGGAT 57.095 45.000 0.00 0.00 40.00 3.24
874 950 2.309755 AGATGAATTGGGCAAGTCAGGA 59.690 45.455 0.00 0.00 46.48 3.86
905 1030 6.943899 AAATAGGGGAATTTGCCAAAGTAA 57.056 33.333 9.33 0.00 0.00 2.24
906 1031 9.890915 ATATAAATAGGGGAATTTGCCAAAGTA 57.109 29.630 9.33 0.00 31.63 2.24
907 1032 8.797436 ATATAAATAGGGGAATTTGCCAAAGT 57.203 30.769 9.33 0.00 31.63 2.66
968 1103 2.305927 TGGAACTCAACTCCCAAGGATC 59.694 50.000 0.00 0.00 31.32 3.36
1242 2245 3.695606 GGCGTGGAGGTGAGCTCA 61.696 66.667 13.74 13.74 0.00 4.26
1338 2679 0.675837 TGCTGCAGTTGAGCCAGATC 60.676 55.000 16.64 0.00 35.43 2.75
2402 4099 2.903855 GAGCGTGGGCATGATGGG 60.904 66.667 0.00 0.00 43.41 4.00
2403 4100 3.274586 CGAGCGTGGGCATGATGG 61.275 66.667 0.00 0.00 43.41 3.51
2404 4101 3.945434 GCGAGCGTGGGCATGATG 61.945 66.667 0.00 0.00 43.41 3.07
2611 4344 3.715495 TGGTTTCACAATGTTGATGCAC 58.285 40.909 0.00 0.00 0.00 4.57
2670 4403 3.330701 TGAGATCTAGCCACACCCTTTTT 59.669 43.478 0.00 0.00 0.00 1.94
2671 4404 2.912956 TGAGATCTAGCCACACCCTTTT 59.087 45.455 0.00 0.00 0.00 2.27
2672 4405 2.503356 CTGAGATCTAGCCACACCCTTT 59.497 50.000 0.00 0.00 0.00 3.11
2673 4406 2.114616 CTGAGATCTAGCCACACCCTT 58.885 52.381 0.00 0.00 0.00 3.95
2674 4407 1.007721 ACTGAGATCTAGCCACACCCT 59.992 52.381 0.00 0.00 0.00 4.34
2675 4408 1.410882 GACTGAGATCTAGCCACACCC 59.589 57.143 0.00 0.00 0.00 4.61
2676 4409 1.066303 CGACTGAGATCTAGCCACACC 59.934 57.143 0.00 0.00 0.00 4.16
2677 4410 2.017782 TCGACTGAGATCTAGCCACAC 58.982 52.381 0.00 0.00 0.00 3.82
2678 4411 2.017782 GTCGACTGAGATCTAGCCACA 58.982 52.381 8.70 0.00 0.00 4.17
2679 4412 2.032799 CAGTCGACTGAGATCTAGCCAC 59.967 54.545 36.73 0.00 46.59 5.01
2680 4413 2.293170 CAGTCGACTGAGATCTAGCCA 58.707 52.381 36.73 0.00 46.59 4.75
2691 4424 5.696724 ACTTGGTTAAAATCTCAGTCGACTG 59.303 40.000 34.76 34.76 45.08 3.51
2692 4425 5.855045 ACTTGGTTAAAATCTCAGTCGACT 58.145 37.500 13.58 13.58 0.00 4.18
2693 4426 5.927115 AGACTTGGTTAAAATCTCAGTCGAC 59.073 40.000 7.70 7.70 0.00 4.20
2694 4427 6.097915 AGACTTGGTTAAAATCTCAGTCGA 57.902 37.500 0.00 0.00 0.00 4.20
2695 4428 6.787085 AAGACTTGGTTAAAATCTCAGTCG 57.213 37.500 0.00 0.00 0.00 4.18
2696 4429 8.834749 ACTAAGACTTGGTTAAAATCTCAGTC 57.165 34.615 0.00 0.00 0.00 3.51
2697 4430 8.429641 TGACTAAGACTTGGTTAAAATCTCAGT 58.570 33.333 5.60 0.00 0.00 3.41
2698 4431 8.833231 TGACTAAGACTTGGTTAAAATCTCAG 57.167 34.615 5.60 0.00 0.00 3.35
2699 4432 9.273016 CTTGACTAAGACTTGGTTAAAATCTCA 57.727 33.333 5.60 0.00 35.92 3.27
2700 4433 9.274206 ACTTGACTAAGACTTGGTTAAAATCTC 57.726 33.333 5.60 0.00 37.36 2.75
2701 4434 9.057089 CACTTGACTAAGACTTGGTTAAAATCT 57.943 33.333 5.60 0.00 37.36 2.40
2702 4435 7.803659 GCACTTGACTAAGACTTGGTTAAAATC 59.196 37.037 5.60 0.00 37.36 2.17
2703 4436 7.502561 AGCACTTGACTAAGACTTGGTTAAAAT 59.497 33.333 5.60 0.00 37.36 1.82
2704 4437 6.826741 AGCACTTGACTAAGACTTGGTTAAAA 59.173 34.615 5.60 1.41 37.36 1.52
2705 4438 6.354130 AGCACTTGACTAAGACTTGGTTAAA 58.646 36.000 5.60 3.65 37.36 1.52
2706 4439 5.925509 AGCACTTGACTAAGACTTGGTTAA 58.074 37.500 5.60 7.15 37.36 2.01
2707 4440 5.546621 AGCACTTGACTAAGACTTGGTTA 57.453 39.130 5.60 0.00 37.36 2.85
2708 4441 4.423625 AGCACTTGACTAAGACTTGGTT 57.576 40.909 5.60 0.00 37.36 3.67
2709 4442 5.746990 ATAGCACTTGACTAAGACTTGGT 57.253 39.130 3.54 3.54 37.36 3.67
2710 4443 7.097192 TGTTATAGCACTTGACTAAGACTTGG 58.903 38.462 0.00 0.00 37.36 3.61
2711 4444 8.598924 CATGTTATAGCACTTGACTAAGACTTG 58.401 37.037 0.00 0.00 37.36 3.16
2712 4445 8.314751 ACATGTTATAGCACTTGACTAAGACTT 58.685 33.333 0.00 0.00 37.36 3.01
2713 4446 7.841956 ACATGTTATAGCACTTGACTAAGACT 58.158 34.615 0.00 0.00 37.36 3.24
2714 4447 9.021863 GTACATGTTATAGCACTTGACTAAGAC 57.978 37.037 2.30 0.00 37.36 3.01
2715 4448 7.913821 CGTACATGTTATAGCACTTGACTAAGA 59.086 37.037 2.30 0.00 37.36 2.10
2716 4449 7.913821 TCGTACATGTTATAGCACTTGACTAAG 59.086 37.037 2.30 0.00 39.86 2.18
2717 4450 7.764331 TCGTACATGTTATAGCACTTGACTAA 58.236 34.615 2.30 0.00 0.00 2.24
2718 4451 7.324354 TCGTACATGTTATAGCACTTGACTA 57.676 36.000 2.30 0.00 0.00 2.59
2719 4452 6.203808 TCGTACATGTTATAGCACTTGACT 57.796 37.500 2.30 0.00 0.00 3.41
2720 4453 6.880822 TTCGTACATGTTATAGCACTTGAC 57.119 37.500 2.30 0.00 0.00 3.18
2721 4454 7.317390 TCTTTCGTACATGTTATAGCACTTGA 58.683 34.615 2.30 0.00 0.00 3.02
2722 4455 7.520119 TCTTTCGTACATGTTATAGCACTTG 57.480 36.000 2.30 0.00 0.00 3.16
2723 4456 8.542497 TTTCTTTCGTACATGTTATAGCACTT 57.458 30.769 2.30 0.00 0.00 3.16
2724 4457 8.542497 TTTTCTTTCGTACATGTTATAGCACT 57.458 30.769 2.30 0.00 0.00 4.40
2763 4496 8.737168 TCTTATGTCGAGATTCATGGATTTTT 57.263 30.769 0.00 0.00 0.00 1.94
2764 4497 8.915057 ATCTTATGTCGAGATTCATGGATTTT 57.085 30.769 0.00 0.00 29.77 1.82
2765 4498 8.373981 AGATCTTATGTCGAGATTCATGGATTT 58.626 33.333 0.00 0.00 34.13 2.17
2766 4499 7.905265 AGATCTTATGTCGAGATTCATGGATT 58.095 34.615 0.00 0.00 34.13 3.01
2767 4500 7.479352 AGATCTTATGTCGAGATTCATGGAT 57.521 36.000 0.00 2.69 34.13 3.41
2768 4501 6.907853 AGATCTTATGTCGAGATTCATGGA 57.092 37.500 0.00 0.00 34.13 3.41
2769 4502 9.085250 CATTAGATCTTATGTCGAGATTCATGG 57.915 37.037 12.58 0.00 34.13 3.66
2770 4503 9.852091 TCATTAGATCTTATGTCGAGATTCATG 57.148 33.333 18.56 0.00 34.13 3.07
2785 4518 9.800433 CAGTCGATGCTATATTCATTAGATCTT 57.200 33.333 0.00 0.00 0.00 2.40
2786 4519 9.183368 TCAGTCGATGCTATATTCATTAGATCT 57.817 33.333 0.00 0.00 0.00 2.75
2787 4520 9.449550 CTCAGTCGATGCTATATTCATTAGATC 57.550 37.037 0.00 0.00 0.00 2.75
2788 4521 9.183368 TCTCAGTCGATGCTATATTCATTAGAT 57.817 33.333 0.00 0.00 0.00 1.98
2789 4522 8.454894 GTCTCAGTCGATGCTATATTCATTAGA 58.545 37.037 0.00 0.00 0.00 2.10
2790 4523 8.239998 TGTCTCAGTCGATGCTATATTCATTAG 58.760 37.037 0.00 0.00 0.00 1.73
2791 4524 8.110860 TGTCTCAGTCGATGCTATATTCATTA 57.889 34.615 0.00 0.00 0.00 1.90
2792 4525 6.986250 TGTCTCAGTCGATGCTATATTCATT 58.014 36.000 0.00 0.00 0.00 2.57
2793 4526 6.581171 TGTCTCAGTCGATGCTATATTCAT 57.419 37.500 0.00 0.00 0.00 2.57
2794 4527 6.581171 ATGTCTCAGTCGATGCTATATTCA 57.419 37.500 0.00 0.00 0.00 2.57
2795 4528 9.232082 GATTATGTCTCAGTCGATGCTATATTC 57.768 37.037 0.00 0.00 0.00 1.75
2796 4529 8.743714 TGATTATGTCTCAGTCGATGCTATATT 58.256 33.333 0.00 0.00 0.00 1.28
2797 4530 8.286191 TGATTATGTCTCAGTCGATGCTATAT 57.714 34.615 0.00 0.00 0.00 0.86
2798 4531 7.687941 TGATTATGTCTCAGTCGATGCTATA 57.312 36.000 0.00 0.00 0.00 1.31
2799 4532 6.581171 TGATTATGTCTCAGTCGATGCTAT 57.419 37.500 0.00 0.00 0.00 2.97
2800 4533 6.039829 ACTTGATTATGTCTCAGTCGATGCTA 59.960 38.462 0.00 0.00 0.00 3.49
2801 4534 4.926140 TGATTATGTCTCAGTCGATGCT 57.074 40.909 0.00 0.00 0.00 3.79
2802 4535 5.046529 ACTTGATTATGTCTCAGTCGATGC 58.953 41.667 0.00 0.00 0.00 3.91
2803 4536 6.502652 AGACTTGATTATGTCTCAGTCGATG 58.497 40.000 0.67 0.00 40.22 3.84
2804 4537 6.707440 AGACTTGATTATGTCTCAGTCGAT 57.293 37.500 0.67 0.00 40.22 3.59
2811 4544 4.612943 GTCCCGAGACTTGATTATGTCTC 58.387 47.826 18.39 18.39 46.60 3.36
2812 4545 4.657436 GTCCCGAGACTTGATTATGTCT 57.343 45.455 5.81 5.81 42.18 3.41
2824 4557 4.065789 AGAACAATTTTCAGTCCCGAGAC 58.934 43.478 0.00 0.00 43.89 3.36
2825 4558 4.315803 GAGAACAATTTTCAGTCCCGAGA 58.684 43.478 0.00 0.00 0.00 4.04
2826 4559 3.437049 GGAGAACAATTTTCAGTCCCGAG 59.563 47.826 0.00 0.00 0.00 4.63
2827 4560 3.408634 GGAGAACAATTTTCAGTCCCGA 58.591 45.455 0.00 0.00 0.00 5.14
2828 4561 2.159627 CGGAGAACAATTTTCAGTCCCG 59.840 50.000 0.00 0.00 0.00 5.14
2829 4562 3.146847 ACGGAGAACAATTTTCAGTCCC 58.853 45.455 0.00 0.00 0.00 4.46
2830 4563 4.153655 GGTACGGAGAACAATTTTCAGTCC 59.846 45.833 0.00 0.00 0.00 3.85
2831 4564 4.153655 GGGTACGGAGAACAATTTTCAGTC 59.846 45.833 0.00 0.00 0.00 3.51
2832 4565 4.070009 GGGTACGGAGAACAATTTTCAGT 58.930 43.478 0.00 0.00 0.00 3.41
2833 4566 3.439129 GGGGTACGGAGAACAATTTTCAG 59.561 47.826 0.00 0.00 0.00 3.02
2834 4567 3.414269 GGGGTACGGAGAACAATTTTCA 58.586 45.455 0.00 0.00 0.00 2.69
2835 4568 2.751259 GGGGGTACGGAGAACAATTTTC 59.249 50.000 0.00 0.00 0.00 2.29
2836 4569 2.799017 GGGGGTACGGAGAACAATTTT 58.201 47.619 0.00 0.00 0.00 1.82
2837 4570 2.502142 GGGGGTACGGAGAACAATTT 57.498 50.000 0.00 0.00 0.00 1.82
2871 4604 0.746563 ATGTCAATACAACCGCGGGG 60.747 55.000 31.76 23.38 39.58 5.73
2872 4605 0.376852 CATGTCAATACAACCGCGGG 59.623 55.000 31.76 15.62 39.58 6.13
2873 4606 0.248054 GCATGTCAATACAACCGCGG 60.248 55.000 26.86 26.86 39.58 6.46
2874 4607 0.586256 CGCATGTCAATACAACCGCG 60.586 55.000 0.00 0.00 42.43 6.46
2875 4608 0.861450 GCGCATGTCAATACAACCGC 60.861 55.000 0.30 9.32 45.34 5.68
2876 4609 0.445829 TGCGCATGTCAATACAACCG 59.554 50.000 5.66 0.00 39.58 4.44
2877 4610 1.468520 AGTGCGCATGTCAATACAACC 59.531 47.619 15.91 0.00 39.58 3.77
2878 4611 2.476185 GGAGTGCGCATGTCAATACAAC 60.476 50.000 15.91 0.00 39.58 3.32
2879 4612 1.737236 GGAGTGCGCATGTCAATACAA 59.263 47.619 15.91 0.00 39.58 2.41
2880 4613 1.368641 GGAGTGCGCATGTCAATACA 58.631 50.000 15.91 0.00 40.69 2.29
2881 4614 0.657840 GGGAGTGCGCATGTCAATAC 59.342 55.000 15.91 0.00 0.00 1.89
2882 4615 0.541392 AGGGAGTGCGCATGTCAATA 59.459 50.000 15.91 0.00 0.00 1.90
2883 4616 0.745845 GAGGGAGTGCGCATGTCAAT 60.746 55.000 15.91 6.00 0.00 2.57
2884 4617 1.375908 GAGGGAGTGCGCATGTCAA 60.376 57.895 15.91 0.00 0.00 3.18
2885 4618 2.265739 GAGGGAGTGCGCATGTCA 59.734 61.111 15.91 0.00 0.00 3.58
2886 4619 1.676678 TAGGAGGGAGTGCGCATGTC 61.677 60.000 15.91 14.08 0.00 3.06
2887 4620 1.264749 TTAGGAGGGAGTGCGCATGT 61.265 55.000 15.91 3.51 0.00 3.21
2888 4621 0.107456 ATTAGGAGGGAGTGCGCATG 59.893 55.000 15.91 0.00 0.00 4.06
2889 4622 1.717032 TATTAGGAGGGAGTGCGCAT 58.283 50.000 15.91 1.95 0.00 4.73
2890 4623 1.491668 TTATTAGGAGGGAGTGCGCA 58.508 50.000 5.66 5.66 0.00 6.09
2891 4624 2.841442 ATTATTAGGAGGGAGTGCGC 57.159 50.000 0.00 0.00 0.00 6.09
2892 4625 4.866508 TGTATTATTAGGAGGGAGTGCG 57.133 45.455 0.00 0.00 0.00 5.34
2893 4626 6.360370 TGATGTATTATTAGGAGGGAGTGC 57.640 41.667 0.00 0.00 0.00 4.40
2894 4627 9.277783 CTTTTGATGTATTATTAGGAGGGAGTG 57.722 37.037 0.00 0.00 0.00 3.51
2895 4628 9.225682 TCTTTTGATGTATTATTAGGAGGGAGT 57.774 33.333 0.00 0.00 0.00 3.85
2956 4757 5.766174 TGTGCATACGTAGTGAGGTATCATA 59.234 40.000 0.08 0.00 45.73 2.15
2957 4758 4.583073 TGTGCATACGTAGTGAGGTATCAT 59.417 41.667 0.08 0.00 45.73 2.45
2958 4759 3.949113 TGTGCATACGTAGTGAGGTATCA 59.051 43.478 0.08 0.00 45.73 2.15
2959 4760 4.563337 TGTGCATACGTAGTGAGGTATC 57.437 45.455 0.08 0.00 45.73 2.24
2960 4761 4.994907 TTGTGCATACGTAGTGAGGTAT 57.005 40.909 0.08 0.00 45.73 2.73
2985 4811 1.559682 GAAGGAGGAATGTAGCCACCA 59.440 52.381 0.00 0.00 38.47 4.17
2994 4820 2.836981 AGAGACCACTGAAGGAGGAATG 59.163 50.000 0.00 0.00 0.00 2.67
2995 4821 3.197927 AGAGACCACTGAAGGAGGAAT 57.802 47.619 0.00 0.00 0.00 3.01
2997 4823 2.024846 CCTAGAGACCACTGAAGGAGGA 60.025 54.545 0.00 0.00 30.49 3.71
3011 4837 2.334977 TGGAGTTTGTTGCCCTAGAGA 58.665 47.619 0.00 0.00 0.00 3.10
3039 4865 1.669779 GGTTTTGTTTGCAATGCAGCA 59.330 42.857 8.31 9.17 40.61 4.41
3070 4896 3.501828 TCGCTGATTGTTGCTATGTTGTT 59.498 39.130 0.00 0.00 0.00 2.83
3083 4909 2.159043 ACAGTGGGTATCTCGCTGATTG 60.159 50.000 15.62 0.00 43.24 2.67
3090 4916 4.713824 TGTAAGAACAGTGGGTATCTCG 57.286 45.455 0.00 0.00 0.00 4.04
3096 4922 3.201266 TCCAACTTGTAAGAACAGTGGGT 59.799 43.478 0.00 0.00 36.83 4.51
3105 4931 6.294508 GCTTTAGCCAAATCCAACTTGTAAGA 60.295 38.462 0.00 0.00 34.31 2.10
3125 4951 5.071788 CCAGTCAACCCTATCATAGGCTTTA 59.928 44.000 4.99 0.00 44.86 1.85
3143 4969 1.612442 GCCTCAGTACCCCCAGTCA 60.612 63.158 0.00 0.00 0.00 3.41
3168 4995 5.983118 CCAGTTTATCCACTTTTGGTCAAAC 59.017 40.000 11.61 11.61 44.35 2.93
3189 6160 5.824097 TGATTTGACACATATCATCACCCAG 59.176 40.000 0.00 0.00 29.60 4.45
3202 6173 4.035091 CGAAAAGGTGACTGATTTGACACA 59.965 41.667 0.00 0.00 42.68 3.72
3225 6196 3.810373 CAACACGCTAGAACATTTGACC 58.190 45.455 0.00 0.00 0.00 4.02
3230 6201 0.796312 CGGCAACACGCTAGAACATT 59.204 50.000 0.00 0.00 41.91 2.71
3236 6207 1.060937 GCATTCGGCAACACGCTAG 59.939 57.895 0.00 0.00 43.97 3.42
3267 6238 2.204151 CCCAGTCCCAGACCCCTT 60.204 66.667 0.00 0.00 32.18 3.95
3295 6267 5.070685 CACAAATAAGAATAGGTAGGGGCC 58.929 45.833 0.00 0.00 0.00 5.80
3319 6291 2.430248 AAAGTGGACAAACCTTCGGT 57.570 45.000 0.00 0.00 39.86 4.69
3321 6293 5.051816 TGTAGTAAAGTGGACAAACCTTCG 58.948 41.667 0.00 0.00 39.86 3.79
3326 6298 7.709613 TCTCTCTTTGTAGTAAAGTGGACAAAC 59.290 37.037 0.00 0.00 36.99 2.93
3357 6336 2.577593 GGAGTGACGGTGCCCTAC 59.422 66.667 0.00 0.00 0.00 3.18
3358 6337 2.682494 GGGAGTGACGGTGCCCTA 60.682 66.667 0.00 0.00 37.59 3.53
3395 6374 2.316372 AGGAGATTGGAGACACTAGGGT 59.684 50.000 0.00 0.00 42.67 4.34
3408 6387 5.702349 AAGAGTCTGCAAAAAGGAGATTG 57.298 39.130 0.00 0.00 46.90 2.67
3422 6401 3.548818 CGGTGGCTTTGAAAAAGAGTCTG 60.549 47.826 3.95 0.00 0.00 3.51
3459 6448 9.579932 AAACAGTTCTAAGATTTCCTTGATCTT 57.420 29.630 4.92 4.92 43.99 2.40
3474 6463 6.260936 CCTGAGCTTTTCTGAAACAGTTCTAA 59.739 38.462 19.16 8.39 34.60 2.10
3480 6469 2.030451 GGCCTGAGCTTTTCTGAAACAG 60.030 50.000 1.58 6.88 39.73 3.16
3482 6471 1.956477 TGGCCTGAGCTTTTCTGAAAC 59.044 47.619 3.32 0.00 39.73 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.