Multiple sequence alignment - TraesCS7A01G088100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G088100 chr7A 100.000 6477 0 0 1 6477 52972707 52966231 0.000000e+00 11961.0
1 TraesCS7A01G088100 chr7A 88.125 160 11 6 6270 6424 707996142 707996298 3.990000e-42 183.0
2 TraesCS7A01G088100 chr7A 82.075 106 13 4 5839 5940 250681281 250681384 1.160000e-12 86.1
3 TraesCS7A01G088100 chr7A 82.075 106 11 5 5837 5936 477232561 477232458 4.160000e-12 84.2
4 TraesCS7A01G088100 chr4A 92.699 5917 287 44 6 5864 664489609 664483780 0.000000e+00 8399.0
5 TraesCS7A01G088100 chr4A 80.508 354 32 13 5907 6247 664483773 664483444 3.020000e-58 237.0
6 TraesCS7A01G088100 chr4A 87.313 134 16 1 2110 2243 722083688 722083820 1.120000e-32 152.0
7 TraesCS7A01G088100 chr4A 87.313 134 16 1 2110 2243 722101074 722101206 1.120000e-32 152.0
8 TraesCS7A01G088100 chr7D 92.675 5911 281 53 6 5883 49889157 49883366 0.000000e+00 8377.0
9 TraesCS7A01G088100 chr7D 88.182 220 25 1 5891 6110 49883313 49883095 1.790000e-65 261.0
10 TraesCS7A01G088100 chr7D 85.714 98 6 4 5836 5932 174147935 174147845 5.350000e-16 97.1
11 TraesCS7A01G088100 chr7D 84.536 97 7 4 5837 5932 119897081 119896992 8.940000e-14 89.8
12 TraesCS7A01G088100 chr4B 82.105 475 69 9 882 1350 193993937 193993473 6.090000e-105 392.0
13 TraesCS7A01G088100 chr4B 88.095 210 24 1 1517 1725 193993400 193993191 1.390000e-61 248.0
14 TraesCS7A01G088100 chr4B 84.615 130 13 2 2124 2246 193969476 193969347 8.820000e-24 122.0
15 TraesCS7A01G088100 chr4B 89.535 86 7 2 1798 1882 193984102 193984018 2.470000e-19 108.0
16 TraesCS7A01G088100 chr2A 83.051 413 54 7 946 1346 748500901 748500493 1.720000e-95 361.0
17 TraesCS7A01G088100 chr2B 89.338 272 28 1 1391 1661 646627913 646628184 2.240000e-89 340.0
18 TraesCS7A01G088100 chr2B 79.459 370 54 13 867 1233 646627566 646627916 6.490000e-60 243.0
19 TraesCS7A01G088100 chr2B 87.234 94 8 2 6332 6424 82853349 82853439 3.190000e-18 104.0
20 TraesCS7A01G088100 chr5B 79.421 311 58 3 2969 3273 400668132 400668442 1.410000e-51 215.0
21 TraesCS7A01G088100 chr5B 85.366 164 18 4 6264 6425 350408348 350408189 1.440000e-36 165.0
22 TraesCS7A01G088100 chr5B 81.410 156 20 6 6266 6415 359873889 359873737 1.140000e-22 119.0
23 TraesCS7A01G088100 chr5B 86.207 87 7 3 5854 5939 509175635 509175553 8.940000e-14 89.8
24 TraesCS7A01G088100 chr5A 80.065 306 48 8 2978 3273 442354855 442355157 1.410000e-51 215.0
25 TraesCS7A01G088100 chr5A 88.800 125 14 0 2317 2441 442354578 442354702 3.130000e-33 154.0
26 TraesCS7A01G088100 chr5D 79.233 313 56 8 2969 3273 341195352 341195663 6.580000e-50 209.0
27 TraesCS7A01G088100 chr5D 77.926 299 57 8 2978 3273 553327146 553327438 1.860000e-40 178.0
28 TraesCS7A01G088100 chr5D 89.600 125 13 0 2317 2441 341195086 341195210 6.720000e-35 159.0
29 TraesCS7A01G088100 chr5D 100.000 28 0 0 6392 6419 245379524 245379497 1.200000e-02 52.8
30 TraesCS7A01G088100 chr1D 91.971 137 10 1 2110 2246 365916504 365916369 2.380000e-44 191.0
31 TraesCS7A01G088100 chr1D 90.361 83 5 3 5839 5920 114067096 114067176 8.880000e-19 106.0
32 TraesCS7A01G088100 chr7B 86.452 155 15 4 6264 6415 480277631 480277782 1.440000e-36 165.0
33 TraesCS7A01G088100 chr7B 86.735 98 5 4 5836 5932 138742433 138742343 1.150000e-17 102.0
34 TraesCS7A01G088100 chr7B 81.538 130 12 5 2124 2246 94991972 94991848 5.350000e-16 97.1
35 TraesCS7A01G088100 chr6D 85.161 155 11 10 6269 6418 41538005 41538152 1.460000e-31 148.0
36 TraesCS7A01G088100 chr6D 88.333 120 14 0 2124 2243 413029616 413029735 1.880000e-30 145.0
37 TraesCS7A01G088100 chr6D 87.500 88 7 3 5838 5923 96747799 96747884 1.490000e-16 99.0
38 TraesCS7A01G088100 chr1B 86.992 123 9 4 1712 1833 84365477 84365593 1.470000e-26 132.0
39 TraesCS7A01G088100 chr1B 84.158 101 8 4 5840 5940 493871880 493871972 2.490000e-14 91.6
40 TraesCS7A01G088100 chrUn 92.222 90 7 0 1744 1833 2105490 2105401 1.900000e-25 128.0
41 TraesCS7A01G088100 chr2D 85.039 127 12 2 2124 2243 624271395 624271521 8.820000e-24 122.0
42 TraesCS7A01G088100 chr3D 80.447 179 18 11 6249 6422 481712809 481712975 3.170000e-23 121.0
43 TraesCS7A01G088100 chr3D 85.567 97 9 3 6328 6424 91684721 91684630 5.350000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G088100 chr7A 52966231 52972707 6476 True 11961.0 11961 100.0000 1 6477 1 chr7A.!!$R1 6476
1 TraesCS7A01G088100 chr4A 664483444 664489609 6165 True 4318.0 8399 86.6035 6 6247 2 chr4A.!!$R1 6241
2 TraesCS7A01G088100 chr7D 49883095 49889157 6062 True 4319.0 8377 90.4285 6 6110 2 chr7D.!!$R3 6104
3 TraesCS7A01G088100 chr4B 193993191 193993937 746 True 320.0 392 85.1000 882 1725 2 chr4B.!!$R3 843
4 TraesCS7A01G088100 chr2B 646627566 646628184 618 False 291.5 340 84.3985 867 1661 2 chr2B.!!$F2 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 410 0.033601 AGGCACAAACCCACAGTGAA 60.034 50.000 0.62 0.0 35.33 3.18 F
983 999 0.687354 TTCCTCTGCAGACCTTGTCC 59.313 55.000 13.74 0.0 32.18 4.02 F
1319 1338 1.065551 GAAACAGAGGTTTTGTGCGCT 59.934 47.619 9.73 0.0 46.84 5.92 F
2527 2549 1.447317 GCCCATGGTACTCATTGCGG 61.447 60.000 11.73 0.0 32.92 5.69 F
3702 3727 0.618458 GCTTGGTCCTGTGGGTCATA 59.382 55.000 0.00 0.0 0.00 2.15 F
4430 4473 1.455786 CAGAGGTTCGTAAACACTGCG 59.544 52.381 0.00 0.0 37.10 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 1681 1.065273 GATGCTTGCCGATTGCCAG 59.935 57.895 0.00 0.0 40.16 4.85 R
2167 2189 1.589716 GGCATCCTTGTGGCACAGAC 61.590 60.000 20.97 7.2 41.80 3.51 R
3185 3208 2.310538 AGAAAACTTCCACCAGCAAGG 58.689 47.619 0.00 0.0 45.67 3.61 R
4381 4424 0.326264 AGACATCAACCTGCCCACTC 59.674 55.000 0.00 0.0 0.00 3.51 R
4977 5045 1.079503 GCTGTCCATTGACGACTTCC 58.920 55.000 0.00 0.0 44.86 3.46 R
6111 6251 0.028770 GAGATCTCGACTGGACGCAG 59.971 60.000 7.04 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.307691 CCCTCTACTGTTCCATTGCTGAA 60.308 47.826 0.00 0.00 0.00 3.02
55 56 2.171725 GTACGCTCCAATCCACCGC 61.172 63.158 0.00 0.00 0.00 5.68
134 140 0.394565 CTCCCTGCTAAGATTCCCGG 59.605 60.000 0.00 0.00 0.00 5.73
137 143 1.700042 CCTGCTAAGATTCCCGGCCT 61.700 60.000 0.00 0.00 0.00 5.19
156 162 2.282745 GGCCTTGCTTGCTCACCT 60.283 61.111 0.00 0.00 0.00 4.00
225 231 0.350541 ATACTGGGATTGGGGGTCCT 59.649 55.000 0.00 0.00 36.00 3.85
268 274 4.581868 ACTCGCTTCTGAAGACTACTAGT 58.418 43.478 21.06 0.00 0.00 2.57
353 360 1.516161 GATCTGCCGCATTCAGCATA 58.484 50.000 0.00 0.00 46.13 3.14
354 361 2.082231 GATCTGCCGCATTCAGCATAT 58.918 47.619 0.00 0.00 46.13 1.78
378 385 1.119684 GTGCTTTTCCACCCACCTTT 58.880 50.000 0.00 0.00 0.00 3.11
399 406 0.817634 TTCGAGGCACAAACCCACAG 60.818 55.000 0.00 0.00 0.00 3.66
403 410 0.033601 AGGCACAAACCCACAGTGAA 60.034 50.000 0.62 0.00 35.33 3.18
437 444 2.976903 GCTGGCGCTGGATCCATC 60.977 66.667 16.63 10.67 0.00 3.51
443 450 1.410153 GGCGCTGGATCCATCAATTTT 59.590 47.619 16.63 0.00 0.00 1.82
492 505 3.765511 AGTTAGATTACTGTACCGCCACA 59.234 43.478 0.00 0.00 0.00 4.17
518 531 3.535561 CGTTTGATTAGGACAGGCAGAT 58.464 45.455 0.00 0.00 0.00 2.90
551 564 3.938963 TCTCTGTGGTGTTTCAGTGTTTC 59.061 43.478 0.00 0.00 33.89 2.78
626 639 0.879090 CTTGTGATGCTCTGCTGCAA 59.121 50.000 3.02 0.00 46.61 4.08
641 654 3.582208 TGCTGCAAGGGGATTGTTATTTT 59.418 39.130 0.00 0.00 41.29 1.82
648 661 4.746466 AGGGGATTGTTATTTTGTGGTGA 58.254 39.130 0.00 0.00 0.00 4.02
658 671 8.984891 TGTTATTTTGTGGTGATCATGATTTC 57.015 30.769 10.14 6.13 0.00 2.17
660 673 5.956068 TTTTGTGGTGATCATGATTTCGA 57.044 34.783 10.14 0.98 0.00 3.71
661 674 5.550232 TTTGTGGTGATCATGATTTCGAG 57.450 39.130 10.14 0.00 0.00 4.04
671 684 9.559958 GTGATCATGATTTCGAGTTTTATTTGT 57.440 29.630 10.14 0.00 0.00 2.83
674 687 6.806249 TCATGATTTCGAGTTTTATTTGTGGC 59.194 34.615 0.00 0.00 0.00 5.01
710 723 4.188462 ACGCCGAAATCATGATGACTTAA 58.812 39.130 9.46 0.00 0.00 1.85
738 751 1.487976 CTCAGCTTCCTGGAATGCCTA 59.512 52.381 20.12 11.85 39.61 3.93
758 771 4.574828 CCTAAGTTTGGTTCCCATATCACG 59.425 45.833 0.00 0.00 31.53 4.35
760 773 2.088423 GTTTGGTTCCCATATCACGCA 58.912 47.619 0.00 0.00 31.53 5.24
767 780 1.138069 TCCCATATCACGCAACATCGT 59.862 47.619 0.00 0.00 44.35 3.73
976 992 6.533367 CAGTAACTAGAATTTCCTCTGCAGAC 59.467 42.308 13.74 0.60 0.00 3.51
983 999 0.687354 TTCCTCTGCAGACCTTGTCC 59.313 55.000 13.74 0.00 32.18 4.02
1005 1021 1.084370 CGACGTCTTCTTGGATGGCC 61.084 60.000 14.70 0.00 0.00 5.36
1089 1106 6.201806 CGAGAGATCTGTTTTTACATGGATCC 59.798 42.308 4.20 4.20 32.56 3.36
1126 1143 4.212636 CCAAAGAATGCAAAAGCAAGAAGG 59.787 41.667 0.00 0.00 0.00 3.46
1319 1338 1.065551 GAAACAGAGGTTTTGTGCGCT 59.934 47.619 9.73 0.00 46.84 5.92
1355 1374 8.806429 TGTCATCTTTGAATTAATTAGCCAGA 57.194 30.769 0.00 1.57 32.48 3.86
1380 1399 6.924060 ACTTCCTGTAAGCTAATAACTATGCG 59.076 38.462 0.00 0.00 38.93 4.73
1591 1611 2.031314 CACAGCGTTAGAGCCATCATTG 59.969 50.000 0.00 0.00 38.01 2.82
1957 1979 8.046708 TCACTGCATTTATTAGCTCCTAAAGAA 58.953 33.333 0.00 0.00 29.35 2.52
1981 2003 2.282040 AGCTCGCAAAAGGCAGCT 60.282 55.556 7.21 7.21 45.69 4.24
2018 2040 5.415701 CCCACTATGCTGTGAACTTAACATT 59.584 40.000 6.64 0.00 40.12 2.71
2128 2150 9.757227 GCAATGGTATGATATCTTCTAGGATAC 57.243 37.037 3.98 1.95 31.98 2.24
2527 2549 1.447317 GCCCATGGTACTCATTGCGG 61.447 60.000 11.73 0.00 32.92 5.69
2550 2572 8.167345 GCGGACTTCAACTTAAGTAAGATTAAC 58.833 37.037 20.17 9.28 39.78 2.01
2559 2581 6.819146 ACTTAAGTAAGATTAACCAGCTCTGC 59.181 38.462 6.26 0.00 37.08 4.26
2566 2588 6.442513 AGATTAACCAGCTCTGCAAATTAC 57.557 37.500 0.00 0.00 0.00 1.89
2567 2589 5.945784 AGATTAACCAGCTCTGCAAATTACA 59.054 36.000 0.00 0.00 0.00 2.41
2579 2601 6.132658 TCTGCAAATTACAATTGGGGCTATA 58.867 36.000 10.83 0.00 0.00 1.31
2610 2632 8.099537 TCTGCTTATCCTATGATTTCTCCAATC 58.900 37.037 0.00 0.00 41.76 2.67
2620 2642 5.809001 TGATTTCTCCAATCAGCTACAAGT 58.191 37.500 0.00 0.00 45.45 3.16
2621 2643 6.946340 TGATTTCTCCAATCAGCTACAAGTA 58.054 36.000 0.00 0.00 45.45 2.24
2622 2644 7.394016 TGATTTCTCCAATCAGCTACAAGTAA 58.606 34.615 0.00 0.00 45.45 2.24
2660 2682 6.762187 ACAAATTCATTGAGTTTCATGCACAA 59.238 30.769 4.34 0.00 41.85 3.33
2756 2779 9.040939 CATGATATTGACACGGTACTTTTATGA 57.959 33.333 0.00 0.00 0.00 2.15
2782 2805 3.129988 CCCTGATCCTCAAACAGAAATGC 59.870 47.826 0.00 0.00 34.07 3.56
2783 2806 3.181503 CCTGATCCTCAAACAGAAATGCG 60.182 47.826 0.00 0.00 34.07 4.73
2784 2807 3.673902 TGATCCTCAAACAGAAATGCGA 58.326 40.909 0.00 0.00 0.00 5.10
2786 2809 3.126001 TCCTCAAACAGAAATGCGAGT 57.874 42.857 0.00 0.00 0.00 4.18
2797 2820 7.609760 ACAGAAATGCGAGTGTTATCATTTA 57.390 32.000 0.00 0.00 38.71 1.40
2839 2862 6.647334 TTTATCAGTCCATGCAGTTTTTCA 57.353 33.333 0.00 0.00 0.00 2.69
2872 2895 4.462508 TGTGGTTTTGTTGATGCTTTCA 57.537 36.364 0.00 0.00 0.00 2.69
2974 2997 7.637709 TGAGTATATGACGTGTATTTGCATC 57.362 36.000 0.00 0.00 0.00 3.91
3036 3059 8.149631 AGAATATTGTTGGAATTCCATTTGGT 57.850 30.769 27.53 14.77 46.97 3.67
3075 3098 7.360113 TGAAAAAGGTCTAAAAGAAATGCCT 57.640 32.000 0.00 0.00 0.00 4.75
3106 3129 6.127793 AGCTCCTCTCATAAATCAGCAAAAT 58.872 36.000 0.00 0.00 0.00 1.82
3292 3315 8.980610 TCTGAATTGCAACAATTTTATTCTGTG 58.019 29.630 0.00 0.00 0.00 3.66
3571 3595 9.274206 GTACAGAAGTTCAATAATTAGGGGATC 57.726 37.037 5.50 0.00 0.00 3.36
3639 3663 7.582719 AGATAAGGTTGTAAGCATGGGATTAA 58.417 34.615 0.00 0.00 0.00 1.40
3646 3671 8.040727 GGTTGTAAGCATGGGATTAAAGATTTT 58.959 33.333 0.00 0.00 0.00 1.82
3657 3682 9.921637 TGGGATTAAAGATTTTGTTGAATACAC 57.078 29.630 0.00 0.00 36.21 2.90
3658 3683 9.072294 GGGATTAAAGATTTTGTTGAATACACG 57.928 33.333 0.00 0.00 36.21 4.49
3681 3706 3.055963 ACTTGAGTCTCTGGAGATGCTTG 60.056 47.826 3.52 0.00 39.97 4.01
3702 3727 0.618458 GCTTGGTCCTGTGGGTCATA 59.382 55.000 0.00 0.00 0.00 2.15
3727 3752 6.479006 AGAATCAGGTCATCACAAAGATTGA 58.521 36.000 0.00 0.00 33.72 2.57
3730 3755 5.624159 TCAGGTCATCACAAAGATTGAAGT 58.376 37.500 0.00 0.00 33.72 3.01
3740 3765 8.463930 TCACAAAGATTGAAGTCCAAGTTATT 57.536 30.769 0.00 0.00 38.31 1.40
3789 3815 3.251484 AGGTCATTCCTCTGTTTCCTGA 58.749 45.455 0.00 0.00 44.42 3.86
3790 3816 3.848975 AGGTCATTCCTCTGTTTCCTGAT 59.151 43.478 0.00 0.00 44.42 2.90
3791 3817 5.032846 AGGTCATTCCTCTGTTTCCTGATA 58.967 41.667 0.00 0.00 44.42 2.15
3792 3818 5.669447 AGGTCATTCCTCTGTTTCCTGATAT 59.331 40.000 0.00 0.00 44.42 1.63
3793 3819 6.159398 AGGTCATTCCTCTGTTTCCTGATATT 59.841 38.462 0.00 0.00 44.42 1.28
3794 3820 6.484977 GGTCATTCCTCTGTTTCCTGATATTC 59.515 42.308 0.00 0.00 0.00 1.75
3795 3821 6.484977 GTCATTCCTCTGTTTCCTGATATTCC 59.515 42.308 0.00 0.00 0.00 3.01
3796 3822 6.158520 TCATTCCTCTGTTTCCTGATATTCCA 59.841 38.462 0.00 0.00 0.00 3.53
3797 3823 5.620738 TCCTCTGTTTCCTGATATTCCAG 57.379 43.478 0.00 0.00 0.00 3.86
3798 3824 4.133078 CCTCTGTTTCCTGATATTCCAGC 58.867 47.826 0.00 0.00 32.97 4.85
3799 3825 4.384537 CCTCTGTTTCCTGATATTCCAGCA 60.385 45.833 0.00 0.00 32.97 4.41
3800 3826 5.374921 CTCTGTTTCCTGATATTCCAGCAT 58.625 41.667 0.00 0.00 32.97 3.79
3801 3827 5.128205 TCTGTTTCCTGATATTCCAGCATG 58.872 41.667 0.00 0.00 32.97 4.06
3802 3828 5.104402 TCTGTTTCCTGATATTCCAGCATGA 60.104 40.000 0.00 0.00 39.69 3.07
3907 3933 6.882140 TCAGAATTAAATGGAACCTCGCTTAA 59.118 34.615 0.00 0.00 0.00 1.85
3911 3937 6.887626 TTAAATGGAACCTCGCTTAAGTTT 57.112 33.333 4.02 0.00 0.00 2.66
3935 3962 3.051581 ACCCAGATAGGTGAAGATGCAT 58.948 45.455 0.00 0.00 39.24 3.96
3951 3978 2.508361 CATGGATGCAGAAACCCCC 58.492 57.895 0.00 0.00 0.00 5.40
4034 4061 4.868171 TCTGTTCGTGCACAATACCTATTC 59.132 41.667 18.64 0.00 0.00 1.75
4185 4212 2.024414 GAAGCTCAACGGGCCATTAAT 58.976 47.619 4.39 0.00 0.00 1.40
4265 4308 5.865085 TCTCTCTCTCTCTCTAAGCCATAC 58.135 45.833 0.00 0.00 0.00 2.39
4266 4309 5.606749 TCTCTCTCTCTCTCTAAGCCATACT 59.393 44.000 0.00 0.00 0.00 2.12
4271 4314 7.394016 TCTCTCTCTCTAAGCCATACTCTATG 58.606 42.308 0.00 0.00 35.94 2.23
4303 4346 3.266510 ACATCATGTCATTAGGCACGT 57.733 42.857 0.00 0.00 0.00 4.49
4430 4473 1.455786 CAGAGGTTCGTAAACACTGCG 59.544 52.381 0.00 0.00 37.10 5.18
4451 4494 5.349270 TGCGCTATTTGTATTGAAACGTACT 59.651 36.000 9.73 0.00 0.00 2.73
4586 4629 1.620822 AGGGATTCTGTGTGGTTTGC 58.379 50.000 0.00 0.00 0.00 3.68
4621 4664 3.618507 GCAGGACAAGTAAGTGAGCTCAT 60.619 47.826 21.47 7.45 0.00 2.90
4627 4670 3.810310 AGTAAGTGAGCTCATAGTGGC 57.190 47.619 21.47 5.60 0.00 5.01
4977 5045 2.744202 CCCGTTTCTCTGTTCCATTCTG 59.256 50.000 0.00 0.00 0.00 3.02
5047 5124 9.295214 CTATTTAGTGACACTGATTACACTCTG 57.705 37.037 18.58 0.00 42.39 3.35
5140 5217 2.502510 GCTTGTCGTGCCAATGCG 60.503 61.111 0.00 0.00 41.78 4.73
5170 5247 3.663176 CTGTGCACCGTGCTTGGG 61.663 66.667 23.52 8.20 45.31 4.12
5230 5307 7.148000 GCCCTTGCAGTTTAATTAATCTTCTCT 60.148 37.037 6.13 0.00 37.47 3.10
5258 5335 0.393820 ACGTACGGTTCACCCATGTT 59.606 50.000 21.06 0.00 0.00 2.71
5413 5490 3.980989 ACGGCACCGAAGCGTGTA 61.981 61.111 17.40 0.00 42.83 2.90
5419 5496 1.153353 CACCGAAGCGTGTAAACCAT 58.847 50.000 0.00 0.00 0.00 3.55
5422 5499 2.997986 ACCGAAGCGTGTAAACCATAAG 59.002 45.455 0.00 0.00 0.00 1.73
5505 5582 6.245115 TGTTGCTACAGAACTTGAATGATG 57.755 37.500 0.00 0.00 0.00 3.07
5513 5590 6.413052 ACAGAACTTGAATGATGAGTGCTAT 58.587 36.000 0.00 0.00 28.17 2.97
5527 5604 3.686016 AGTGCTATGGAATTTCGGTGTT 58.314 40.909 0.00 0.00 0.00 3.32
5540 5617 2.657143 TCGGTGTTAAGTTTTTGCCCT 58.343 42.857 0.00 0.00 0.00 5.19
5541 5618 2.359531 TCGGTGTTAAGTTTTTGCCCTG 59.640 45.455 0.00 0.00 0.00 4.45
5578 5655 6.632834 CGGTTTTTCTCTTTGTGTAATCAGTG 59.367 38.462 0.00 0.00 0.00 3.66
5584 5661 8.506168 TTCTCTTTGTGTAATCAGTGAAGTTT 57.494 30.769 0.00 0.00 0.00 2.66
5661 5739 1.694639 GCTTGTGCAATCAGTTCAGC 58.305 50.000 0.00 0.00 39.41 4.26
5673 5751 2.358898 TCAGTTCAGCTCAACTTTTGCC 59.641 45.455 0.00 0.00 34.17 4.52
5685 5763 3.026707 ACTTTTGCCTTGTGTAACCCT 57.973 42.857 0.00 0.00 34.36 4.34
5687 5765 3.383505 ACTTTTGCCTTGTGTAACCCTTC 59.616 43.478 0.00 0.00 34.36 3.46
5734 5812 5.208463 TCAGTTTTTCCCATTTAACCTGC 57.792 39.130 0.00 0.00 0.00 4.85
5738 5816 2.938428 TTCCCATTTAACCTGCCCAT 57.062 45.000 0.00 0.00 0.00 4.00
5767 5846 3.342377 TTTGTGTCACCAGTTCAGTCA 57.658 42.857 0.00 0.00 0.00 3.41
5816 5895 8.932945 TTTGTGTAATCAATGTAGTTTTTGCA 57.067 26.923 0.00 0.00 0.00 4.08
5849 5934 5.069251 CGTTCAGTCATTTATACTCCCTCCT 59.931 44.000 0.00 0.00 0.00 3.69
5850 5935 6.284459 GTTCAGTCATTTATACTCCCTCCTG 58.716 44.000 0.00 0.00 0.00 3.86
5851 5936 4.345257 TCAGTCATTTATACTCCCTCCTGC 59.655 45.833 0.00 0.00 0.00 4.85
5854 5939 1.815757 TTTATACTCCCTCCTGCCCC 58.184 55.000 0.00 0.00 0.00 5.80
5864 5949 2.559705 CCCTCCTGCCCCAAAATAAGTT 60.560 50.000 0.00 0.00 0.00 2.66
5866 5951 3.582647 CCTCCTGCCCCAAAATAAGTTTT 59.417 43.478 0.00 0.00 38.03 2.43
5922 6052 5.371115 ACCACGACACTTATTTTGGAATG 57.629 39.130 0.00 0.00 0.00 2.67
5923 6053 5.067273 ACCACGACACTTATTTTGGAATGA 58.933 37.500 0.00 0.00 0.00 2.57
5926 6056 6.072728 CCACGACACTTATTTTGGAATGAAGA 60.073 38.462 0.00 0.00 0.00 2.87
5955 6085 9.349145 GTAATATGTTTCAGCGGTACAATTTTT 57.651 29.630 0.00 0.00 0.00 1.94
6009 6139 1.476085 TGGTTCACTGCTGGTGTTTTG 59.524 47.619 9.47 0.00 45.50 2.44
6057 6197 2.281498 GTCTGCGTGTTTTTGCCTTTTC 59.719 45.455 0.00 0.00 0.00 2.29
6058 6198 1.592543 CTGCGTGTTTTTGCCTTTTCC 59.407 47.619 0.00 0.00 0.00 3.13
6059 6199 0.934496 GCGTGTTTTTGCCTTTTCCC 59.066 50.000 0.00 0.00 0.00 3.97
6060 6200 1.577468 CGTGTTTTTGCCTTTTCCCC 58.423 50.000 0.00 0.00 0.00 4.81
6100 6240 4.487714 TGACCTGAATTAGTGGGCTAAG 57.512 45.455 0.00 0.00 40.17 2.18
6111 6251 2.237392 AGTGGGCTAAGGTCACTCAATC 59.763 50.000 0.00 0.00 37.16 2.67
6123 6263 0.109086 ACTCAATCTGCGTCCAGTCG 60.109 55.000 0.00 0.00 40.09 4.18
6137 6277 2.497675 TCCAGTCGAGATCTCCCAAAAG 59.502 50.000 17.13 2.00 0.00 2.27
6138 6278 2.275318 CAGTCGAGATCTCCCAAAAGC 58.725 52.381 17.13 0.31 0.00 3.51
6140 6280 2.093764 AGTCGAGATCTCCCAAAAGCTG 60.094 50.000 17.13 0.00 0.00 4.24
6141 6281 1.208052 TCGAGATCTCCCAAAAGCTGG 59.792 52.381 17.13 0.00 45.97 4.85
6142 6282 1.065854 CGAGATCTCCCAAAAGCTGGT 60.066 52.381 17.13 0.00 44.76 4.00
6143 6283 2.616510 CGAGATCTCCCAAAAGCTGGTT 60.617 50.000 17.13 0.00 44.76 3.67
6144 6284 3.013219 GAGATCTCCCAAAAGCTGGTTC 58.987 50.000 12.00 0.00 44.76 3.62
6145 6285 2.646798 AGATCTCCCAAAAGCTGGTTCT 59.353 45.455 0.00 0.00 44.76 3.01
6146 6286 2.568623 TCTCCCAAAAGCTGGTTCTC 57.431 50.000 0.00 0.00 44.76 2.87
6147 6287 1.073923 TCTCCCAAAAGCTGGTTCTCC 59.926 52.381 0.00 0.00 44.76 3.71
6148 6288 0.112412 TCCCAAAAGCTGGTTCTCCC 59.888 55.000 0.00 0.00 44.76 4.30
6149 6289 0.178964 CCCAAAAGCTGGTTCTCCCA 60.179 55.000 0.00 0.00 44.76 4.37
6150 6290 1.703411 CCAAAAGCTGGTTCTCCCAA 58.297 50.000 0.00 0.00 44.65 4.12
6151 6291 2.038659 CCAAAAGCTGGTTCTCCCAAA 58.961 47.619 0.00 0.00 44.65 3.28
6152 6292 2.433970 CCAAAAGCTGGTTCTCCCAAAA 59.566 45.455 0.00 0.00 44.65 2.44
6153 6293 3.118445 CCAAAAGCTGGTTCTCCCAAAAA 60.118 43.478 0.00 0.00 44.65 1.94
6218 6358 1.064946 CTCTCGCCTGTCCGATGTC 59.935 63.158 0.00 0.00 36.54 3.06
6220 6360 1.037579 TCTCGCCTGTCCGATGTCAT 61.038 55.000 0.00 0.00 36.54 3.06
6221 6361 0.596083 CTCGCCTGTCCGATGTCATC 60.596 60.000 2.43 2.43 36.54 2.92
6247 6389 3.069289 TGCACAATAGCAGACACTCTTG 58.931 45.455 0.00 0.00 40.11 3.02
6248 6390 2.417933 GCACAATAGCAGACACTCTTGG 59.582 50.000 0.00 0.00 30.30 3.61
6249 6391 3.005554 CACAATAGCAGACACTCTTGGG 58.994 50.000 0.00 0.00 30.30 4.12
6250 6392 2.026822 ACAATAGCAGACACTCTTGGGG 60.027 50.000 0.00 0.00 30.30 4.96
6251 6393 1.958288 ATAGCAGACACTCTTGGGGT 58.042 50.000 0.00 0.00 0.00 4.95
6252 6394 1.267121 TAGCAGACACTCTTGGGGTC 58.733 55.000 0.00 0.00 0.00 4.46
6253 6395 0.472734 AGCAGACACTCTTGGGGTCT 60.473 55.000 0.00 0.00 42.32 3.85
6255 6397 3.560226 AGACACTCTTGGGGTCTGT 57.440 52.632 0.00 0.00 40.21 3.41
6256 6398 1.343069 AGACACTCTTGGGGTCTGTC 58.657 55.000 0.00 0.00 40.21 3.51
6257 6399 1.133009 AGACACTCTTGGGGTCTGTCT 60.133 52.381 0.00 0.00 40.21 3.41
6258 6400 2.110188 AGACACTCTTGGGGTCTGTCTA 59.890 50.000 0.00 0.00 40.21 2.59
6259 6401 2.494073 GACACTCTTGGGGTCTGTCTAG 59.506 54.545 0.00 0.00 0.00 2.43
6260 6402 1.827969 CACTCTTGGGGTCTGTCTAGG 59.172 57.143 0.00 0.00 0.00 3.02
6261 6403 1.717077 ACTCTTGGGGTCTGTCTAGGA 59.283 52.381 0.00 0.00 0.00 2.94
6262 6404 2.316372 ACTCTTGGGGTCTGTCTAGGAT 59.684 50.000 0.00 0.00 0.00 3.24
6263 6405 3.532232 ACTCTTGGGGTCTGTCTAGGATA 59.468 47.826 0.00 0.00 0.00 2.59
6264 6406 3.892588 CTCTTGGGGTCTGTCTAGGATAC 59.107 52.174 0.00 0.00 0.00 2.24
6265 6407 3.271225 TCTTGGGGTCTGTCTAGGATACA 59.729 47.826 0.00 0.00 41.41 2.29
6266 6408 3.769189 TGGGGTCTGTCTAGGATACAA 57.231 47.619 0.00 0.00 41.41 2.41
6267 6409 4.069312 TGGGGTCTGTCTAGGATACAAA 57.931 45.455 0.00 0.00 41.41 2.83
6268 6410 3.773119 TGGGGTCTGTCTAGGATACAAAC 59.227 47.826 0.00 0.00 41.41 2.93
6269 6411 4.031611 GGGGTCTGTCTAGGATACAAACT 58.968 47.826 0.00 0.00 41.41 2.66
6270 6412 5.206587 GGGGTCTGTCTAGGATACAAACTA 58.793 45.833 0.00 0.00 41.41 2.24
6271 6413 5.839606 GGGGTCTGTCTAGGATACAAACTAT 59.160 44.000 0.00 0.00 41.41 2.12
6272 6414 6.239345 GGGGTCTGTCTAGGATACAAACTATG 60.239 46.154 0.00 0.00 41.41 2.23
6273 6415 6.324254 GGGTCTGTCTAGGATACAAACTATGT 59.676 42.308 0.00 0.00 46.36 2.29
6274 6416 7.427214 GGTCTGTCTAGGATACAAACTATGTC 58.573 42.308 0.00 0.00 42.70 3.06
6275 6417 7.068348 GGTCTGTCTAGGATACAAACTATGTCA 59.932 40.741 0.00 0.00 42.70 3.58
6276 6418 7.916450 GTCTGTCTAGGATACAAACTATGTCAC 59.084 40.741 0.00 0.00 42.70 3.67
6277 6419 7.614192 TCTGTCTAGGATACAAACTATGTCACA 59.386 37.037 0.00 0.00 42.70 3.58
6278 6420 8.306313 TGTCTAGGATACAAACTATGTCACAT 57.694 34.615 0.00 0.00 42.70 3.21
6279 6421 8.414003 TGTCTAGGATACAAACTATGTCACATC 58.586 37.037 0.00 0.00 42.70 3.06
6280 6422 7.868415 GTCTAGGATACAAACTATGTCACATCC 59.132 40.741 0.00 2.15 41.84 3.51
6281 6423 6.560003 AGGATACAAACTATGTCACATCCA 57.440 37.500 0.00 0.00 43.08 3.41
6282 6424 6.957631 AGGATACAAACTATGTCACATCCAA 58.042 36.000 0.00 0.00 43.08 3.53
6283 6425 6.823689 AGGATACAAACTATGTCACATCCAAC 59.176 38.462 0.00 0.00 43.08 3.77
6284 6426 6.038271 GGATACAAACTATGTCACATCCAACC 59.962 42.308 0.00 0.00 41.44 3.77
6285 6427 4.079253 ACAAACTATGTCACATCCAACCC 58.921 43.478 0.00 0.00 37.96 4.11
6286 6428 2.691409 ACTATGTCACATCCAACCCG 57.309 50.000 0.00 0.00 0.00 5.28
6287 6429 2.184533 ACTATGTCACATCCAACCCGA 58.815 47.619 0.00 0.00 0.00 5.14
6288 6430 2.771943 ACTATGTCACATCCAACCCGAT 59.228 45.455 0.00 0.00 0.00 4.18
6289 6431 2.042686 ATGTCACATCCAACCCGATG 57.957 50.000 0.00 0.00 44.38 3.84
6297 6439 4.873746 CATCCAACCCGATGTCTACTAT 57.126 45.455 0.00 0.00 35.83 2.12
6298 6440 4.560128 CATCCAACCCGATGTCTACTATG 58.440 47.826 0.00 0.00 35.83 2.23
6299 6441 3.638860 TCCAACCCGATGTCTACTATGT 58.361 45.455 0.00 0.00 0.00 2.29
6300 6442 4.028131 TCCAACCCGATGTCTACTATGTT 58.972 43.478 0.00 0.00 0.00 2.71
6301 6443 4.468510 TCCAACCCGATGTCTACTATGTTT 59.531 41.667 0.00 0.00 0.00 2.83
6302 6444 4.570772 CCAACCCGATGTCTACTATGTTTG 59.429 45.833 0.00 0.00 0.00 2.93
6303 6445 5.175859 CAACCCGATGTCTACTATGTTTGT 58.824 41.667 0.00 0.00 0.00 2.83
6304 6446 4.755411 ACCCGATGTCTACTATGTTTGTG 58.245 43.478 0.00 0.00 0.00 3.33
6305 6447 4.119862 CCCGATGTCTACTATGTTTGTGG 58.880 47.826 0.00 0.00 0.00 4.17
6306 6448 4.382685 CCCGATGTCTACTATGTTTGTGGT 60.383 45.833 0.00 0.00 0.00 4.16
6307 6449 5.175859 CCGATGTCTACTATGTTTGTGGTT 58.824 41.667 0.00 0.00 0.00 3.67
6308 6450 6.334989 CCGATGTCTACTATGTTTGTGGTTA 58.665 40.000 0.00 0.00 0.00 2.85
6309 6451 6.984474 CCGATGTCTACTATGTTTGTGGTTAT 59.016 38.462 0.00 0.00 0.00 1.89
6310 6452 7.494625 CCGATGTCTACTATGTTTGTGGTTATT 59.505 37.037 0.00 0.00 0.00 1.40
6311 6453 8.879759 CGATGTCTACTATGTTTGTGGTTATTT 58.120 33.333 0.00 0.00 0.00 1.40
6355 6497 9.474920 TTTTGTTCCTTCTTGCTATGTTATTTG 57.525 29.630 0.00 0.00 0.00 2.32
6356 6498 7.759489 TGTTCCTTCTTGCTATGTTATTTGT 57.241 32.000 0.00 0.00 0.00 2.83
6357 6499 7.592938 TGTTCCTTCTTGCTATGTTATTTGTG 58.407 34.615 0.00 0.00 0.00 3.33
6358 6500 6.757897 TCCTTCTTGCTATGTTATTTGTGG 57.242 37.500 0.00 0.00 0.00 4.17
6359 6501 6.480763 TCCTTCTTGCTATGTTATTTGTGGA 58.519 36.000 0.00 0.00 0.00 4.02
6360 6502 6.945435 TCCTTCTTGCTATGTTATTTGTGGAA 59.055 34.615 0.00 0.00 0.00 3.53
6361 6503 7.121168 TCCTTCTTGCTATGTTATTTGTGGAAG 59.879 37.037 0.00 0.00 0.00 3.46
6362 6504 6.194796 TCTTGCTATGTTATTTGTGGAAGC 57.805 37.500 0.00 0.00 0.00 3.86
6363 6505 5.945784 TCTTGCTATGTTATTTGTGGAAGCT 59.054 36.000 0.00 0.00 0.00 3.74
6364 6506 6.434028 TCTTGCTATGTTATTTGTGGAAGCTT 59.566 34.615 0.00 0.00 0.00 3.74
6365 6507 7.609918 TCTTGCTATGTTATTTGTGGAAGCTTA 59.390 33.333 0.00 0.00 0.00 3.09
6366 6508 7.320443 TGCTATGTTATTTGTGGAAGCTTAG 57.680 36.000 0.00 0.00 0.00 2.18
6367 6509 7.109501 TGCTATGTTATTTGTGGAAGCTTAGA 58.890 34.615 0.00 0.00 0.00 2.10
6368 6510 7.775093 TGCTATGTTATTTGTGGAAGCTTAGAT 59.225 33.333 0.00 0.00 0.00 1.98
6369 6511 9.273016 GCTATGTTATTTGTGGAAGCTTAGATA 57.727 33.333 0.00 0.00 0.00 1.98
6372 6514 9.851686 ATGTTATTTGTGGAAGCTTAGATATGA 57.148 29.630 0.00 0.00 0.00 2.15
6373 6515 9.109393 TGTTATTTGTGGAAGCTTAGATATGAC 57.891 33.333 0.00 0.00 0.00 3.06
6374 6516 9.109393 GTTATTTGTGGAAGCTTAGATATGACA 57.891 33.333 0.00 0.00 0.00 3.58
6375 6517 9.851686 TTATTTGTGGAAGCTTAGATATGACAT 57.148 29.630 0.00 0.00 0.00 3.06
6376 6518 7.792374 TTTGTGGAAGCTTAGATATGACATC 57.208 36.000 0.00 0.00 0.00 3.06
6377 6519 5.858381 TGTGGAAGCTTAGATATGACATCC 58.142 41.667 0.00 0.00 0.00 3.51
6378 6520 5.604231 TGTGGAAGCTTAGATATGACATCCT 59.396 40.000 0.00 0.00 0.00 3.24
6379 6521 6.100279 TGTGGAAGCTTAGATATGACATCCTT 59.900 38.462 0.00 0.00 0.00 3.36
6380 6522 7.290014 TGTGGAAGCTTAGATATGACATCCTTA 59.710 37.037 0.00 0.00 0.00 2.69
6381 6523 7.816995 GTGGAAGCTTAGATATGACATCCTTAG 59.183 40.741 0.00 0.00 0.00 2.18
6382 6524 7.730332 TGGAAGCTTAGATATGACATCCTTAGA 59.270 37.037 0.00 0.00 0.00 2.10
6383 6525 8.589338 GGAAGCTTAGATATGACATCCTTAGAA 58.411 37.037 0.00 0.00 0.00 2.10
6384 6526 9.988815 GAAGCTTAGATATGACATCCTTAGAAA 57.011 33.333 0.00 0.00 0.00 2.52
6386 6528 9.771534 AGCTTAGATATGACATCCTTAGAAAAC 57.228 33.333 0.00 0.00 0.00 2.43
6387 6529 9.547753 GCTTAGATATGACATCCTTAGAAAACA 57.452 33.333 0.00 0.00 0.00 2.83
6417 6559 9.561069 AGTAGATGTGAATTAGACAAACTGTTT 57.439 29.630 0.00 0.00 0.00 2.83
6420 6562 9.736023 AGATGTGAATTAGACAAACTGTTTTTC 57.264 29.630 10.62 10.62 0.00 2.29
6421 6563 9.515020 GATGTGAATTAGACAAACTGTTTTTCA 57.485 29.630 18.48 14.21 0.00 2.69
6423 6565 9.868277 TGTGAATTAGACAAACTGTTTTTCATT 57.132 25.926 18.48 11.57 0.00 2.57
6436 6578 8.280909 ACTGTTTTTCATTAATAACAAGCACG 57.719 30.769 3.74 0.00 36.51 5.34
6437 6579 7.096230 ACTGTTTTTCATTAATAACAAGCACGC 60.096 33.333 3.74 0.00 36.51 5.34
6438 6580 6.697455 TGTTTTTCATTAATAACAAGCACGCA 59.303 30.769 0.07 0.00 34.78 5.24
6439 6581 6.926280 TTTTCATTAATAACAAGCACGCAG 57.074 33.333 0.00 0.00 0.00 5.18
6440 6582 5.871465 TTCATTAATAACAAGCACGCAGA 57.129 34.783 0.00 0.00 0.00 4.26
6441 6583 6.435430 TTCATTAATAACAAGCACGCAGAT 57.565 33.333 0.00 0.00 0.00 2.90
6442 6584 5.809464 TCATTAATAACAAGCACGCAGATG 58.191 37.500 0.00 0.00 0.00 2.90
6443 6585 5.584251 TCATTAATAACAAGCACGCAGATGA 59.416 36.000 0.00 0.00 0.00 2.92
6444 6586 6.260714 TCATTAATAACAAGCACGCAGATGAT 59.739 34.615 0.00 0.00 0.00 2.45
6445 6587 4.970662 AATAACAAGCACGCAGATGATT 57.029 36.364 0.00 0.00 0.00 2.57
6446 6588 2.907910 AACAAGCACGCAGATGATTC 57.092 45.000 0.00 0.00 0.00 2.52
6447 6589 1.812235 ACAAGCACGCAGATGATTCA 58.188 45.000 0.00 0.00 0.00 2.57
6448 6590 1.736126 ACAAGCACGCAGATGATTCAG 59.264 47.619 0.00 0.00 0.00 3.02
6449 6591 1.063616 CAAGCACGCAGATGATTCAGG 59.936 52.381 0.00 0.00 0.00 3.86
6450 6592 0.538584 AGCACGCAGATGATTCAGGA 59.461 50.000 0.00 0.00 0.00 3.86
6451 6593 1.140452 AGCACGCAGATGATTCAGGAT 59.860 47.619 0.00 0.00 0.00 3.24
6452 6594 1.263484 GCACGCAGATGATTCAGGATG 59.737 52.381 0.00 0.00 37.54 3.51
6453 6595 1.871676 CACGCAGATGATTCAGGATGG 59.128 52.381 0.00 0.00 36.16 3.51
6454 6596 1.764723 ACGCAGATGATTCAGGATGGA 59.235 47.619 0.00 0.00 36.16 3.41
6455 6597 2.224233 ACGCAGATGATTCAGGATGGAG 60.224 50.000 0.00 0.00 36.16 3.86
6456 6598 2.036862 CGCAGATGATTCAGGATGGAGA 59.963 50.000 0.00 0.00 36.16 3.71
6457 6599 3.306849 CGCAGATGATTCAGGATGGAGAT 60.307 47.826 0.00 0.00 36.16 2.75
6458 6600 4.255301 GCAGATGATTCAGGATGGAGATC 58.745 47.826 0.00 0.00 36.16 2.75
6459 6601 4.020039 GCAGATGATTCAGGATGGAGATCT 60.020 45.833 0.00 0.00 36.16 2.75
6460 6602 5.513441 GCAGATGATTCAGGATGGAGATCTT 60.513 44.000 0.00 0.00 36.16 2.40
6461 6603 6.535540 CAGATGATTCAGGATGGAGATCTTT 58.464 40.000 0.00 0.00 36.16 2.52
6462 6604 6.999272 CAGATGATTCAGGATGGAGATCTTTT 59.001 38.462 0.00 0.00 36.16 2.27
6463 6605 7.502895 CAGATGATTCAGGATGGAGATCTTTTT 59.497 37.037 0.00 0.00 36.16 1.94
6464 6606 7.720515 AGATGATTCAGGATGGAGATCTTTTTC 59.279 37.037 0.00 0.00 36.16 2.29
6465 6607 6.724351 TGATTCAGGATGGAGATCTTTTTCA 58.276 36.000 0.00 0.00 36.16 2.69
6466 6608 7.351952 TGATTCAGGATGGAGATCTTTTTCAT 58.648 34.615 0.00 0.00 36.16 2.57
6467 6609 8.496916 TGATTCAGGATGGAGATCTTTTTCATA 58.503 33.333 0.00 0.00 36.16 2.15
6468 6610 9.517868 GATTCAGGATGGAGATCTTTTTCATAT 57.482 33.333 0.00 0.00 36.16 1.78
6470 6612 9.784531 TTCAGGATGGAGATCTTTTTCATATAC 57.215 33.333 0.00 0.00 36.16 1.47
6471 6613 8.937835 TCAGGATGGAGATCTTTTTCATATACA 58.062 33.333 0.00 0.00 36.16 2.29
6472 6614 9.565090 CAGGATGGAGATCTTTTTCATATACAA 57.435 33.333 0.00 0.00 0.00 2.41
6473 6615 9.566432 AGGATGGAGATCTTTTTCATATACAAC 57.434 33.333 0.00 0.00 0.00 3.32
6474 6616 9.342308 GGATGGAGATCTTTTTCATATACAACA 57.658 33.333 0.00 0.00 0.00 3.33
6476 6618 8.213518 TGGAGATCTTTTTCATATACAACAGC 57.786 34.615 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.276201 CGTACGGATTCAGCAATGGAA 58.724 47.619 7.57 0.00 0.00 3.53
23 24 0.304705 GCGTACGGATTCAGCAATGG 59.695 55.000 18.39 0.00 0.00 3.16
33 34 0.104304 GTGGATTGGAGCGTACGGAT 59.896 55.000 18.39 0.00 0.00 4.18
137 143 2.669569 GTGAGCAAGCAAGGCCGA 60.670 61.111 0.00 0.00 0.00 5.54
143 149 1.962822 CGAGCAGGTGAGCAAGCAA 60.963 57.895 2.25 0.00 36.85 3.91
156 162 1.884464 GCCTGCAATCGATCGAGCA 60.884 57.895 24.93 24.93 35.43 4.26
209 215 1.509548 AACAGGACCCCCAATCCCAG 61.510 60.000 0.00 0.00 36.86 4.45
210 216 1.077298 AAACAGGACCCCCAATCCCA 61.077 55.000 0.00 0.00 36.86 4.37
225 231 6.018262 CGAGTAAATCTGAACTGACCAAAACA 60.018 38.462 0.00 0.00 0.00 2.83
268 274 9.167311 GCTGAGTTTTCTAGATTGAAATCCTAA 57.833 33.333 0.00 0.00 36.07 2.69
315 322 2.033448 TCAAAGCGCCACCGGAAT 59.967 55.556 9.46 0.00 34.32 3.01
353 360 2.653557 GGTGGAAAAGCACCCGAAT 58.346 52.632 0.00 0.00 35.53 3.34
354 361 4.167597 GGTGGAAAAGCACCCGAA 57.832 55.556 0.00 0.00 35.53 4.30
372 379 1.021202 TTGTGCCTCGAACAAAGGTG 58.979 50.000 0.00 0.00 34.68 4.00
378 385 1.098712 GTGGGTTTGTGCCTCGAACA 61.099 55.000 10.06 0.00 41.03 3.18
410 417 2.512286 GCGCCAGCAGATGCAGTA 60.512 61.111 7.68 0.00 45.16 2.74
422 429 0.106569 AATTGATGGATCCAGCGCCA 60.107 50.000 24.26 11.77 38.78 5.69
443 450 7.465353 TGTGCTTTGGAATTATTCAATCAGA 57.535 32.000 7.29 0.00 0.00 3.27
492 505 2.350522 CTGTCCTAATCAAACGCAGCT 58.649 47.619 0.00 0.00 0.00 4.24
518 531 2.234661 CACCACAGAGAGGCAGACATTA 59.765 50.000 0.00 0.00 0.00 1.90
551 564 1.336877 TCAGCAAACTCGTCGAATCG 58.663 50.000 0.00 0.00 0.00 3.34
626 639 4.746466 TCACCACAAAATAACAATCCCCT 58.254 39.130 0.00 0.00 0.00 4.79
641 654 4.206477 ACTCGAAATCATGATCACCACA 57.794 40.909 9.06 0.00 0.00 4.17
648 661 7.489113 GCCACAAATAAAACTCGAAATCATGAT 59.511 33.333 1.18 1.18 0.00 2.45
660 673 2.611974 CGCGAGCCACAAATAAAACT 57.388 45.000 0.00 0.00 0.00 2.66
710 723 1.761784 CCAGGAAGCTGAGCTGTCTAT 59.238 52.381 8.16 0.00 39.62 1.98
758 771 4.083537 TCAGTGGTAATTTCACGATGTTGC 60.084 41.667 0.00 0.00 39.86 4.17
760 773 5.063438 CGATCAGTGGTAATTTCACGATGTT 59.937 40.000 15.75 5.02 39.86 2.71
767 780 4.471904 AGCTCGATCAGTGGTAATTTCA 57.528 40.909 0.00 0.00 0.00 2.69
926 942 3.138304 TCACTCTTCAAATGGTGAACGG 58.862 45.455 0.00 0.00 41.47 4.44
976 992 0.728466 GAAGACGTCGTCGGACAAGG 60.728 60.000 19.11 0.00 43.61 3.61
983 999 1.260206 CATCCAAGAAGACGTCGTCG 58.740 55.000 22.80 11.64 37.67 5.12
1005 1021 1.044725 CGCTTGTTTTTACAGCAGCG 58.955 50.000 9.17 9.17 38.15 5.18
1089 1106 5.163893 GCATTCTTTGGCATTTGAATGAGTG 60.164 40.000 26.73 12.75 44.83 3.51
1152 1171 4.391140 CACTTTCGTGGAAGTAGCTTTC 57.609 45.455 0.00 0.00 37.76 2.62
1209 1228 6.109359 ACGATTATCCCAGTCTTCTTGAAAG 58.891 40.000 0.00 0.00 0.00 2.62
1319 1338 8.915057 AATTCAAAGATGACAAAGAAGAGAGA 57.085 30.769 0.00 0.00 34.61 3.10
1355 1374 6.924060 CGCATAGTTATTAGCTTACAGGAAGT 59.076 38.462 0.00 0.00 37.49 3.01
1591 1611 2.166664 AGTAAACGATCTCACCCAGCTC 59.833 50.000 0.00 0.00 0.00 4.09
1661 1681 1.065273 GATGCTTGCCGATTGCCAG 59.935 57.895 0.00 0.00 40.16 4.85
1756 1777 8.310382 AGAATAGCAGTAGTAGATTTGCCATAG 58.690 37.037 0.00 0.00 37.26 2.23
1981 2003 7.655328 CACAGCATAGTGGGAACAAAAATAAAA 59.345 33.333 0.00 0.00 46.06 1.52
2018 2040 7.320443 CTTTATCACCTAAAGTAGCATTGCA 57.680 36.000 11.91 0.00 40.91 4.08
2167 2189 1.589716 GGCATCCTTGTGGCACAGAC 61.590 60.000 20.97 7.20 41.80 3.51
2213 2235 2.957402 AGGGCAGAAGTTGATGTGAA 57.043 45.000 0.00 0.00 0.00 3.18
2214 2236 2.957402 AAGGGCAGAAGTTGATGTGA 57.043 45.000 0.00 0.00 0.00 3.58
2477 2499 2.710096 TTTAGGTAGACATGCCAGCC 57.290 50.000 0.00 0.00 32.66 4.85
2550 2572 4.178540 CCAATTGTAATTTGCAGAGCTGG 58.821 43.478 4.43 0.00 0.00 4.85
2559 2581 7.713764 GCTTTATAGCCCCAATTGTAATTTG 57.286 36.000 4.43 0.00 41.74 2.32
2642 2664 3.985279 CACCTTGTGCATGAAACTCAATG 59.015 43.478 0.00 0.00 0.00 2.82
2643 2665 3.638160 ACACCTTGTGCATGAAACTCAAT 59.362 39.130 0.00 0.00 36.98 2.57
2644 2666 3.023119 ACACCTTGTGCATGAAACTCAA 58.977 40.909 0.00 0.00 36.98 3.02
2645 2667 2.653726 ACACCTTGTGCATGAAACTCA 58.346 42.857 0.00 0.00 36.98 3.41
2695 2717 5.489792 TTGCCCCACTTTTATATTTGCAA 57.510 34.783 0.00 0.00 34.19 4.08
2744 2767 9.311760 GAGGATCAGGGGACTCATAAAAGTACC 62.312 48.148 0.00 0.00 41.64 3.34
2782 2805 8.785101 CACGGAAATTTTAAATGATAACACTCG 58.215 33.333 0.00 0.00 0.00 4.18
2783 2806 8.583765 GCACGGAAATTTTAAATGATAACACTC 58.416 33.333 0.00 0.00 0.00 3.51
2784 2807 8.085296 TGCACGGAAATTTTAAATGATAACACT 58.915 29.630 0.00 0.00 0.00 3.55
2786 2809 7.062839 GCTGCACGGAAATTTTAAATGATAACA 59.937 33.333 0.00 0.00 0.00 2.41
2797 2820 2.908688 AAAGGCTGCACGGAAATTTT 57.091 40.000 0.50 0.00 0.00 1.82
2802 2825 2.487762 CTGATAAAAAGGCTGCACGGAA 59.512 45.455 0.50 0.00 0.00 4.30
2872 2895 3.201266 TGGATAGGGTAAATGCTCCGTTT 59.799 43.478 0.00 0.00 0.00 3.60
2906 2929 7.543868 GCACTCGAGTCTATTATATCATTTGCT 59.456 37.037 16.96 0.00 0.00 3.91
2970 2993 3.134458 GGTGAATACTACCTGCAGATGC 58.866 50.000 17.39 0.00 42.50 3.91
2974 2997 4.215908 TCTAGGGTGAATACTACCTGCAG 58.784 47.826 6.78 6.78 38.30 4.41
3075 3098 7.423844 TGATTTATGAGAGGAGCTTCTTACA 57.576 36.000 0.00 0.00 0.00 2.41
3106 3129 8.818622 TCTGAGAACCTAATAAGCAGTAACTA 57.181 34.615 0.00 0.00 0.00 2.24
3185 3208 2.310538 AGAAAACTTCCACCAGCAAGG 58.689 47.619 0.00 0.00 45.67 3.61
3361 3385 5.573380 AGCATATCAATTCTTCTGGCCTA 57.427 39.130 3.32 0.00 0.00 3.93
3593 3617 6.928348 TCTCCTCTCATTTTGTAACTACCA 57.072 37.500 0.00 0.00 0.00 3.25
3605 3629 6.156949 TGCTTACAACCTTATCTCCTCTCATT 59.843 38.462 0.00 0.00 0.00 2.57
3606 3630 5.663106 TGCTTACAACCTTATCTCCTCTCAT 59.337 40.000 0.00 0.00 0.00 2.90
3639 3663 7.925993 TCAAGTCGTGTATTCAACAAAATCTT 58.074 30.769 0.00 0.00 40.63 2.40
3658 3683 2.760092 AGCATCTCCAGAGACTCAAGTC 59.240 50.000 5.02 1.79 45.08 3.01
3681 3706 1.600916 GACCCACAGGACCAAGCAC 60.601 63.158 0.00 0.00 36.73 4.40
3702 3727 6.944290 TCAATCTTTGTGATGACCTGATTCTT 59.056 34.615 0.00 0.00 35.21 2.52
3740 3765 8.089625 TCCTCAAGAACATCATCCTACAATTA 57.910 34.615 0.00 0.00 0.00 1.40
3751 3776 3.840078 TGACCTCATCCTCAAGAACATCA 59.160 43.478 0.00 0.00 0.00 3.07
3824 3850 4.646572 ACTGACAAGAAATGACCTCCTTC 58.353 43.478 0.00 0.00 0.00 3.46
3883 3909 5.567138 AAGCGAGGTTCCATTTAATTCTG 57.433 39.130 0.00 0.00 0.00 3.02
3907 3933 4.597507 TCTTCACCTATCTGGGTTCAAACT 59.402 41.667 0.00 0.00 41.11 2.66
3911 3937 3.118261 GCATCTTCACCTATCTGGGTTCA 60.118 47.826 0.00 0.00 41.11 3.18
3935 3962 1.076549 GTGGGGGTTTCTGCATCCA 59.923 57.895 0.00 0.00 0.00 3.41
3951 3978 3.338249 AGATGAAACAAGATGGACGGTG 58.662 45.455 0.00 0.00 0.00 4.94
4012 4039 4.629634 TGAATAGGTATTGTGCACGAACAG 59.370 41.667 11.67 0.00 0.00 3.16
4034 4061 1.203174 AGTGTTTGGGGAAGGGGAATG 60.203 52.381 0.00 0.00 0.00 2.67
4086 4113 3.211045 GGTCTTTGGAACTGCTACAACA 58.789 45.455 0.00 0.00 0.00 3.33
4185 4212 5.946972 GCAGTCTACCTCTATATAGGCAGAA 59.053 44.000 8.34 0.00 40.11 3.02
4303 4346 2.094906 GCCGATACCATGATACGCACTA 60.095 50.000 0.00 0.00 0.00 2.74
4312 4355 1.199615 TGACCAAGCCGATACCATGA 58.800 50.000 0.00 0.00 0.00 3.07
4381 4424 0.326264 AGACATCAACCTGCCCACTC 59.674 55.000 0.00 0.00 0.00 3.51
4451 4494 9.913310 TTGGTACATCATCCATGTTTAGAAATA 57.087 29.630 0.00 0.00 43.89 1.40
4458 4501 9.071276 GATTCTATTGGTACATCATCCATGTTT 57.929 33.333 0.00 0.00 43.89 2.83
4459 4502 8.443176 AGATTCTATTGGTACATCATCCATGTT 58.557 33.333 0.00 0.00 43.89 2.71
4491 4534 4.259970 CGCGAATGAGACCTTTTCATACAG 60.260 45.833 0.00 0.00 34.30 2.74
4586 4629 1.962822 TCCTGCAGCTTCAGCAACG 60.963 57.895 8.66 0.00 45.16 4.10
4724 4791 4.575885 ACACCAATGTCGCTAAGTATTGT 58.424 39.130 0.00 0.00 31.55 2.71
4977 5045 1.079503 GCTGTCCATTGACGACTTCC 58.920 55.000 0.00 0.00 44.86 3.46
5007 5075 9.582431 TGTCACTAAATAGTAACAGTAATCAGC 57.418 33.333 0.00 0.00 29.74 4.26
5047 5124 3.423571 CTTGAAATGCGTCTTGATCTGC 58.576 45.455 0.00 0.00 0.00 4.26
5140 5217 1.083806 TGCACAGAATCGCATCGGAC 61.084 55.000 0.00 0.00 31.95 4.79
5170 5247 5.861787 ACTGATTTAACTTACGGCATTTTGC 59.138 36.000 0.00 0.00 44.08 3.68
5245 5322 5.197451 TGTGGATAATAACATGGGTGAACC 58.803 41.667 0.00 0.00 40.81 3.62
5250 5327 3.463329 AGGCTGTGGATAATAACATGGGT 59.537 43.478 0.00 0.00 0.00 4.51
5258 5335 3.392285 ACATGAGCAGGCTGTGGATAATA 59.608 43.478 17.16 0.00 0.00 0.98
5398 5475 1.205820 GTTTACACGCTTCGGTGCC 59.794 57.895 0.00 0.00 41.65 5.01
5413 5490 2.624029 CCACATCCTGCCCTTATGGTTT 60.624 50.000 0.00 0.00 36.04 3.27
5419 5496 1.302949 GTGCCACATCCTGCCCTTA 59.697 57.895 0.00 0.00 0.00 2.69
5505 5582 3.270877 ACACCGAAATTCCATAGCACTC 58.729 45.455 0.00 0.00 0.00 3.51
5513 5590 5.520649 GCAAAAACTTAACACCGAAATTCCA 59.479 36.000 0.00 0.00 0.00 3.53
5540 5617 3.380004 AGAAAAACCGAACTGATTGCACA 59.620 39.130 0.00 0.00 0.00 4.57
5541 5618 3.964909 AGAAAAACCGAACTGATTGCAC 58.035 40.909 0.00 0.00 0.00 4.57
5661 5739 4.359706 GGTTACACAAGGCAAAAGTTGAG 58.640 43.478 0.00 0.00 0.00 3.02
5708 5786 6.923508 CAGGTTAAATGGGAAAAACTGAACTC 59.076 38.462 0.00 0.00 39.75 3.01
5734 5812 4.990426 GGTGACACAAAAATCAAAGATGGG 59.010 41.667 8.08 0.00 0.00 4.00
5738 5816 5.913137 ACTGGTGACACAAAAATCAAAGA 57.087 34.783 8.08 0.00 35.60 2.52
5883 5968 7.434013 GTGTCGTGGTTTTAGTTCAATTCAAAT 59.566 33.333 0.00 0.00 0.00 2.32
5884 5969 6.748198 GTGTCGTGGTTTTAGTTCAATTCAAA 59.252 34.615 0.00 0.00 0.00 2.69
5885 5970 6.094325 AGTGTCGTGGTTTTAGTTCAATTCAA 59.906 34.615 0.00 0.00 0.00 2.69
5886 5971 5.587043 AGTGTCGTGGTTTTAGTTCAATTCA 59.413 36.000 0.00 0.00 0.00 2.57
5888 5973 6.445357 AAGTGTCGTGGTTTTAGTTCAATT 57.555 33.333 0.00 0.00 0.00 2.32
5889 5974 7.739498 ATAAGTGTCGTGGTTTTAGTTCAAT 57.261 32.000 0.00 0.00 0.00 2.57
5903 6033 6.934645 TCTCTTCATTCCAAAATAAGTGTCGT 59.065 34.615 0.00 0.00 0.00 4.34
5922 6052 6.043411 ACCGCTGAAACATATTACTCTCTTC 58.957 40.000 0.00 0.00 0.00 2.87
5923 6053 5.978814 ACCGCTGAAACATATTACTCTCTT 58.021 37.500 0.00 0.00 0.00 2.85
5926 6056 6.216801 TGTACCGCTGAAACATATTACTCT 57.783 37.500 0.00 0.00 0.00 3.24
5973 6103 7.027778 AGTGAACCACTGAAACTATCAAAAC 57.972 36.000 0.00 0.00 43.63 2.43
6009 6139 2.000447 GTTATCAGCGTTCCAGTGACC 59.000 52.381 0.00 0.00 0.00 4.02
6058 6198 5.022787 TCAAATGGTCAAAATAAGAGGGGG 58.977 41.667 0.00 0.00 0.00 5.40
6059 6199 5.105351 GGTCAAATGGTCAAAATAAGAGGGG 60.105 44.000 0.00 0.00 0.00 4.79
6060 6200 5.716703 AGGTCAAATGGTCAAAATAAGAGGG 59.283 40.000 0.00 0.00 0.00 4.30
6062 6202 7.452880 TCAGGTCAAATGGTCAAAATAAGAG 57.547 36.000 0.00 0.00 0.00 2.85
6063 6203 7.831691 TTCAGGTCAAATGGTCAAAATAAGA 57.168 32.000 0.00 0.00 0.00 2.10
6066 6206 9.308000 ACTAATTCAGGTCAAATGGTCAAAATA 57.692 29.630 0.00 0.00 0.00 1.40
6100 6240 0.037326 TGGACGCAGATTGAGTGACC 60.037 55.000 0.00 0.00 28.29 4.02
6111 6251 0.028770 GAGATCTCGACTGGACGCAG 59.971 60.000 7.04 0.00 0.00 5.18
6152 6292 7.769272 TTTCTTCATTTCTCGCACAATTTTT 57.231 28.000 0.00 0.00 0.00 1.94
6153 6293 7.769272 TTTTCTTCATTTCTCGCACAATTTT 57.231 28.000 0.00 0.00 0.00 1.82
6154 6294 7.769272 TTTTTCTTCATTTCTCGCACAATTT 57.231 28.000 0.00 0.00 0.00 1.82
6187 6327 0.108567 GCGAGAGACCAGGAGAAACC 60.109 60.000 0.00 0.00 39.35 3.27
6189 6329 0.251832 AGGCGAGAGACCAGGAGAAA 60.252 55.000 0.00 0.00 43.69 2.52
6190 6330 0.967887 CAGGCGAGAGACCAGGAGAA 60.968 60.000 0.00 0.00 43.69 2.87
6191 6331 1.379176 CAGGCGAGAGACCAGGAGA 60.379 63.158 0.00 0.00 43.69 3.71
6192 6332 1.662438 GACAGGCGAGAGACCAGGAG 61.662 65.000 0.00 0.00 43.69 3.69
6193 6333 1.679305 GACAGGCGAGAGACCAGGA 60.679 63.158 0.00 0.00 43.69 3.86
6218 6358 1.368493 GCTATTGTGCAGCGCGATG 60.368 57.895 22.00 22.00 0.00 3.84
6220 6360 2.434011 TGCTATTGTGCAGCGCGA 60.434 55.556 12.10 0.00 42.13 5.87
6242 6384 2.534042 TCCTAGACAGACCCCAAGAG 57.466 55.000 0.00 0.00 0.00 2.85
6247 6389 4.031611 AGTTTGTATCCTAGACAGACCCC 58.968 47.826 0.00 0.00 33.52 4.95
6248 6390 6.324254 ACATAGTTTGTATCCTAGACAGACCC 59.676 42.308 0.00 0.00 36.57 4.46
6249 6391 7.068348 TGACATAGTTTGTATCCTAGACAGACC 59.932 40.741 0.00 0.00 39.18 3.85
6250 6392 7.916450 GTGACATAGTTTGTATCCTAGACAGAC 59.084 40.741 0.00 0.00 39.18 3.51
6251 6393 7.614192 TGTGACATAGTTTGTATCCTAGACAGA 59.386 37.037 0.00 0.00 39.18 3.41
6252 6394 7.772166 TGTGACATAGTTTGTATCCTAGACAG 58.228 38.462 0.00 0.00 39.18 3.51
6253 6395 7.712204 TGTGACATAGTTTGTATCCTAGACA 57.288 36.000 0.00 0.00 39.18 3.41
6254 6396 7.868415 GGATGTGACATAGTTTGTATCCTAGAC 59.132 40.741 0.00 0.00 37.73 2.59
6255 6397 7.563556 TGGATGTGACATAGTTTGTATCCTAGA 59.436 37.037 0.00 0.00 39.91 2.43
6256 6398 7.726216 TGGATGTGACATAGTTTGTATCCTAG 58.274 38.462 0.00 0.00 39.91 3.02
6257 6399 7.669089 TGGATGTGACATAGTTTGTATCCTA 57.331 36.000 0.00 1.50 39.91 2.94
6258 6400 6.560003 TGGATGTGACATAGTTTGTATCCT 57.440 37.500 0.00 0.00 39.91 3.24
6259 6401 6.038271 GGTTGGATGTGACATAGTTTGTATCC 59.962 42.308 0.00 6.92 39.76 2.59
6260 6402 6.038271 GGGTTGGATGTGACATAGTTTGTATC 59.962 42.308 0.00 0.00 39.18 2.24
6261 6403 5.885912 GGGTTGGATGTGACATAGTTTGTAT 59.114 40.000 0.00 0.00 39.18 2.29
6262 6404 5.250200 GGGTTGGATGTGACATAGTTTGTA 58.750 41.667 0.00 0.00 39.18 2.41
6263 6405 4.079253 GGGTTGGATGTGACATAGTTTGT 58.921 43.478 0.00 0.00 42.79 2.83
6264 6406 3.126858 CGGGTTGGATGTGACATAGTTTG 59.873 47.826 0.00 0.00 0.00 2.93
6265 6407 3.008594 TCGGGTTGGATGTGACATAGTTT 59.991 43.478 0.00 0.00 0.00 2.66
6266 6408 2.569853 TCGGGTTGGATGTGACATAGTT 59.430 45.455 0.00 0.00 0.00 2.24
6267 6409 2.184533 TCGGGTTGGATGTGACATAGT 58.815 47.619 0.00 0.00 0.00 2.12
6268 6410 2.979814 TCGGGTTGGATGTGACATAG 57.020 50.000 0.00 0.00 0.00 2.23
6269 6411 3.192541 CATCGGGTTGGATGTGACATA 57.807 47.619 0.00 0.00 39.15 2.29
6270 6412 2.042686 CATCGGGTTGGATGTGACAT 57.957 50.000 0.00 0.00 39.15 3.06
6271 6413 3.549412 CATCGGGTTGGATGTGACA 57.451 52.632 0.00 0.00 39.15 3.58
6277 6419 4.223953 ACATAGTAGACATCGGGTTGGAT 58.776 43.478 0.00 0.00 0.00 3.41
6278 6420 3.638860 ACATAGTAGACATCGGGTTGGA 58.361 45.455 0.00 0.00 0.00 3.53
6279 6421 4.402056 AACATAGTAGACATCGGGTTGG 57.598 45.455 0.00 0.00 0.00 3.77
6280 6422 5.063438 CACAAACATAGTAGACATCGGGTTG 59.937 44.000 0.00 0.00 0.00 3.77
6281 6423 5.175859 CACAAACATAGTAGACATCGGGTT 58.824 41.667 0.00 0.00 0.00 4.11
6282 6424 4.382685 CCACAAACATAGTAGACATCGGGT 60.383 45.833 0.00 0.00 0.00 5.28
6283 6425 4.119862 CCACAAACATAGTAGACATCGGG 58.880 47.826 0.00 0.00 0.00 5.14
6284 6426 4.755411 ACCACAAACATAGTAGACATCGG 58.245 43.478 0.00 0.00 0.00 4.18
6285 6427 8.420374 AATAACCACAAACATAGTAGACATCG 57.580 34.615 0.00 0.00 0.00 3.84
6329 6471 9.474920 CAAATAACATAGCAAGAAGGAACAAAA 57.525 29.630 0.00 0.00 0.00 2.44
6330 6472 8.637986 ACAAATAACATAGCAAGAAGGAACAAA 58.362 29.630 0.00 0.00 0.00 2.83
6331 6473 8.081633 CACAAATAACATAGCAAGAAGGAACAA 58.918 33.333 0.00 0.00 0.00 2.83
6332 6474 7.309133 CCACAAATAACATAGCAAGAAGGAACA 60.309 37.037 0.00 0.00 0.00 3.18
6333 6475 7.029563 CCACAAATAACATAGCAAGAAGGAAC 58.970 38.462 0.00 0.00 0.00 3.62
6334 6476 6.945435 TCCACAAATAACATAGCAAGAAGGAA 59.055 34.615 0.00 0.00 0.00 3.36
6335 6477 6.480763 TCCACAAATAACATAGCAAGAAGGA 58.519 36.000 0.00 0.00 0.00 3.36
6336 6478 6.757897 TCCACAAATAACATAGCAAGAAGG 57.242 37.500 0.00 0.00 0.00 3.46
6337 6479 6.749118 GCTTCCACAAATAACATAGCAAGAAG 59.251 38.462 0.00 0.00 0.00 2.85
6338 6480 6.434028 AGCTTCCACAAATAACATAGCAAGAA 59.566 34.615 0.00 0.00 0.00 2.52
6339 6481 5.945784 AGCTTCCACAAATAACATAGCAAGA 59.054 36.000 0.00 0.00 0.00 3.02
6340 6482 6.199937 AGCTTCCACAAATAACATAGCAAG 57.800 37.500 0.00 0.00 0.00 4.01
6341 6483 6.588719 AAGCTTCCACAAATAACATAGCAA 57.411 33.333 0.00 0.00 0.00 3.91
6342 6484 7.109501 TCTAAGCTTCCACAAATAACATAGCA 58.890 34.615 0.00 0.00 0.00 3.49
6343 6485 7.553881 TCTAAGCTTCCACAAATAACATAGC 57.446 36.000 0.00 0.00 0.00 2.97
6346 6488 9.851686 TCATATCTAAGCTTCCACAAATAACAT 57.148 29.630 0.00 0.00 0.00 2.71
6347 6489 9.109393 GTCATATCTAAGCTTCCACAAATAACA 57.891 33.333 0.00 0.00 0.00 2.41
6348 6490 9.109393 TGTCATATCTAAGCTTCCACAAATAAC 57.891 33.333 0.00 0.00 0.00 1.89
6349 6491 9.851686 ATGTCATATCTAAGCTTCCACAAATAA 57.148 29.630 0.00 0.00 0.00 1.40
6350 6492 9.494271 GATGTCATATCTAAGCTTCCACAAATA 57.506 33.333 0.00 0.00 0.00 1.40
6351 6493 7.446625 GGATGTCATATCTAAGCTTCCACAAAT 59.553 37.037 0.00 0.00 0.00 2.32
6352 6494 6.767902 GGATGTCATATCTAAGCTTCCACAAA 59.232 38.462 0.00 0.00 0.00 2.83
6353 6495 6.100279 AGGATGTCATATCTAAGCTTCCACAA 59.900 38.462 0.00 0.00 0.00 3.33
6354 6496 5.604231 AGGATGTCATATCTAAGCTTCCACA 59.396 40.000 0.00 0.00 0.00 4.17
6355 6497 6.107901 AGGATGTCATATCTAAGCTTCCAC 57.892 41.667 0.00 0.00 0.00 4.02
6356 6498 6.753913 AAGGATGTCATATCTAAGCTTCCA 57.246 37.500 0.00 0.00 0.00 3.53
6357 6499 8.128322 TCTAAGGATGTCATATCTAAGCTTCC 57.872 38.462 0.00 0.00 0.00 3.46
6358 6500 9.988815 TTTCTAAGGATGTCATATCTAAGCTTC 57.011 33.333 0.00 0.00 0.00 3.86
6360 6502 9.771534 GTTTTCTAAGGATGTCATATCTAAGCT 57.228 33.333 0.00 0.00 0.00 3.74
6361 6503 9.547753 TGTTTTCTAAGGATGTCATATCTAAGC 57.452 33.333 0.00 0.00 0.00 3.09
6391 6533 9.561069 AAACAGTTTGTCTAATTCACATCTACT 57.439 29.630 0.00 0.00 0.00 2.57
6394 6536 9.736023 GAAAAACAGTTTGTCTAATTCACATCT 57.264 29.630 8.78 0.00 0.00 2.90
6395 6537 9.515020 TGAAAAACAGTTTGTCTAATTCACATC 57.485 29.630 15.91 0.00 0.00 3.06
6397 6539 9.868277 AATGAAAAACAGTTTGTCTAATTCACA 57.132 25.926 15.91 0.00 0.00 3.58
6410 6552 8.751335 CGTGCTTGTTATTAATGAAAAACAGTT 58.249 29.630 0.00 0.00 33.70 3.16
6411 6553 7.096230 GCGTGCTTGTTATTAATGAAAAACAGT 60.096 33.333 0.00 0.00 33.70 3.55
6412 6554 7.096271 TGCGTGCTTGTTATTAATGAAAAACAG 60.096 33.333 0.00 0.00 33.70 3.16
6413 6555 6.697455 TGCGTGCTTGTTATTAATGAAAAACA 59.303 30.769 0.00 0.00 0.00 2.83
6414 6556 7.099666 TGCGTGCTTGTTATTAATGAAAAAC 57.900 32.000 0.00 0.00 0.00 2.43
6415 6557 7.142021 TCTGCGTGCTTGTTATTAATGAAAAA 58.858 30.769 0.00 0.00 0.00 1.94
6416 6558 6.673106 TCTGCGTGCTTGTTATTAATGAAAA 58.327 32.000 0.00 0.00 0.00 2.29
6417 6559 6.247727 TCTGCGTGCTTGTTATTAATGAAA 57.752 33.333 0.00 0.00 0.00 2.69
6418 6560 5.871465 TCTGCGTGCTTGTTATTAATGAA 57.129 34.783 0.00 0.00 0.00 2.57
6419 6561 5.584251 TCATCTGCGTGCTTGTTATTAATGA 59.416 36.000 0.00 0.00 0.00 2.57
6420 6562 5.809464 TCATCTGCGTGCTTGTTATTAATG 58.191 37.500 0.00 0.00 0.00 1.90
6421 6563 6.624352 ATCATCTGCGTGCTTGTTATTAAT 57.376 33.333 0.00 0.00 0.00 1.40
6422 6564 6.093357 TGAATCATCTGCGTGCTTGTTATTAA 59.907 34.615 0.00 0.00 0.00 1.40
6423 6565 5.584251 TGAATCATCTGCGTGCTTGTTATTA 59.416 36.000 0.00 0.00 0.00 0.98
6424 6566 4.395854 TGAATCATCTGCGTGCTTGTTATT 59.604 37.500 0.00 0.00 0.00 1.40
6425 6567 3.940852 TGAATCATCTGCGTGCTTGTTAT 59.059 39.130 0.00 0.00 0.00 1.89
6426 6568 3.333804 TGAATCATCTGCGTGCTTGTTA 58.666 40.909 0.00 0.00 0.00 2.41
6427 6569 2.153645 TGAATCATCTGCGTGCTTGTT 58.846 42.857 0.00 0.00 0.00 2.83
6428 6570 1.736126 CTGAATCATCTGCGTGCTTGT 59.264 47.619 0.00 0.00 0.00 3.16
6429 6571 1.063616 CCTGAATCATCTGCGTGCTTG 59.936 52.381 0.00 0.00 0.00 4.01
6430 6572 1.065926 TCCTGAATCATCTGCGTGCTT 60.066 47.619 0.00 0.00 0.00 3.91
6431 6573 0.538584 TCCTGAATCATCTGCGTGCT 59.461 50.000 0.00 0.00 0.00 4.40
6432 6574 1.263484 CATCCTGAATCATCTGCGTGC 59.737 52.381 0.00 0.00 0.00 5.34
6433 6575 1.871676 CCATCCTGAATCATCTGCGTG 59.128 52.381 0.00 0.00 0.00 5.34
6434 6576 1.764723 TCCATCCTGAATCATCTGCGT 59.235 47.619 0.00 0.00 0.00 5.24
6435 6577 2.036862 TCTCCATCCTGAATCATCTGCG 59.963 50.000 0.00 0.00 0.00 5.18
6436 6578 3.766068 TCTCCATCCTGAATCATCTGC 57.234 47.619 0.00 0.00 0.00 4.26
6437 6579 5.748670 AGATCTCCATCCTGAATCATCTG 57.251 43.478 0.00 0.00 0.00 2.90
6438 6580 6.766997 AAAGATCTCCATCCTGAATCATCT 57.233 37.500 0.00 0.00 0.00 2.90
6439 6581 7.501559 TGAAAAAGATCTCCATCCTGAATCATC 59.498 37.037 0.00 0.00 0.00 2.92
6440 6582 7.351952 TGAAAAAGATCTCCATCCTGAATCAT 58.648 34.615 0.00 0.00 0.00 2.45
6441 6583 6.724351 TGAAAAAGATCTCCATCCTGAATCA 58.276 36.000 0.00 0.00 0.00 2.57
6442 6584 7.820578 ATGAAAAAGATCTCCATCCTGAATC 57.179 36.000 0.00 0.00 0.00 2.52
6444 6586 9.784531 GTATATGAAAAAGATCTCCATCCTGAA 57.215 33.333 0.00 0.00 0.00 3.02
6445 6587 8.937835 TGTATATGAAAAAGATCTCCATCCTGA 58.062 33.333 0.00 0.00 0.00 3.86
6446 6588 9.565090 TTGTATATGAAAAAGATCTCCATCCTG 57.435 33.333 0.00 0.00 0.00 3.86
6447 6589 9.566432 GTTGTATATGAAAAAGATCTCCATCCT 57.434 33.333 0.00 0.00 0.00 3.24
6448 6590 9.342308 TGTTGTATATGAAAAAGATCTCCATCC 57.658 33.333 0.00 0.00 0.00 3.51
6450 6592 8.844244 GCTGTTGTATATGAAAAAGATCTCCAT 58.156 33.333 0.00 0.67 0.00 3.41
6451 6593 8.213518 GCTGTTGTATATGAAAAAGATCTCCA 57.786 34.615 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.