Multiple sequence alignment - TraesCS7A01G087600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G087600 chr7A 100.000 3406 0 0 1 3406 52385843 52389248 0.000000e+00 6290.0
1 TraesCS7A01G087600 chr7A 88.172 372 36 2 1071 1440 52278899 52279264 1.450000e-118 436.0
2 TraesCS7A01G087600 chr7A 87.915 331 38 2 1484 1813 52279264 52279593 4.120000e-104 388.0
3 TraesCS7A01G087600 chr7A 78.853 558 66 31 1823 2347 52279549 52280087 2.530000e-86 329.0
4 TraesCS7A01G087600 chr7A 80.174 459 72 11 1878 2327 50369732 50369284 3.280000e-85 326.0
5 TraesCS7A01G087600 chr7A 91.444 187 15 1 1614 1799 50388523 50388337 4.360000e-64 255.0
6 TraesCS7A01G087600 chr7A 96.154 52 1 1 1823 1873 52387610 52387661 2.180000e-12 84.2
7 TraesCS7A01G087600 chr7A 96.154 52 1 1 1768 1819 52387665 52387715 2.180000e-12 84.2
8 TraesCS7A01G087600 chr4A 87.779 851 54 14 974 1819 664153060 664153865 0.000000e+00 950.0
9 TraesCS7A01G087600 chr4A 83.842 1015 129 15 1989 2982 664154280 664155280 0.000000e+00 933.0
10 TraesCS7A01G087600 chr4A 89.546 727 53 13 1 711 664152219 664152938 0.000000e+00 900.0
11 TraesCS7A01G087600 chr4A 85.200 750 75 10 1071 1790 663986136 663986879 0.000000e+00 737.0
12 TraesCS7A01G087600 chr4A 80.627 542 72 26 1878 2399 663986915 663987443 4.120000e-104 388.0
13 TraesCS7A01G087600 chr4A 93.382 136 9 0 1823 1958 664153815 664153950 5.760000e-48 202.0
14 TraesCS7A01G087600 chr7D 91.811 403 28 2 974 1374 49635335 49635734 1.070000e-154 556.0
15 TraesCS7A01G087600 chr7D 78.224 822 116 36 1905 2693 49381982 49382773 5.150000e-128 468.0
16 TraesCS7A01G087600 chr7D 88.450 329 31 3 1495 1817 49635930 49636257 1.150000e-104 390.0
17 TraesCS7A01G087600 chr7D 84.946 372 38 6 1071 1440 49381175 49381530 8.990000e-96 361.0
18 TraesCS7A01G087600 chr7D 85.801 331 35 8 1486 1815 49381533 49381852 1.170000e-89 340.0
19 TraesCS7A01G087600 chr7D 87.591 274 24 2 448 711 49634936 49635209 3.300000e-80 309.0
20 TraesCS7A01G087600 chr7D 90.517 232 12 8 1 227 49631632 49631858 7.150000e-77 298.0
21 TraesCS7A01G087600 chr7D 91.176 204 17 1 1614 1817 47763353 47763151 3.350000e-70 276.0
22 TraesCS7A01G087600 chr7D 85.714 203 18 7 1948 2144 49636515 49636712 1.600000e-48 204.0
23 TraesCS7A01G087600 chr7D 89.147 129 9 2 241 364 49634813 49634941 4.550000e-34 156.0
24 TraesCS7A01G087600 chr7D 92.537 67 4 1 756 821 49635211 49635277 1.010000e-15 95.3
25 TraesCS7A01G087600 chr1B 92.000 50 3 1 832 880 449557747 449557796 6.100000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G087600 chr7A 52385843 52389248 3405 False 2152.800000 6290 97.436000 1 3406 3 chr7A.!!$F2 3405
1 TraesCS7A01G087600 chr7A 52278899 52280087 1188 False 384.333333 436 84.980000 1071 2347 3 chr7A.!!$F1 1276
2 TraesCS7A01G087600 chr4A 664152219 664155280 3061 False 746.250000 950 88.637250 1 2982 4 chr4A.!!$F2 2981
3 TraesCS7A01G087600 chr4A 663986136 663987443 1307 False 562.500000 737 82.913500 1071 2399 2 chr4A.!!$F1 1328
4 TraesCS7A01G087600 chr7D 49381175 49382773 1598 False 389.666667 468 82.990333 1071 2693 3 chr7D.!!$F1 1622
5 TraesCS7A01G087600 chr7D 49631632 49636712 5080 False 286.900000 556 89.395286 1 2144 7 chr7D.!!$F2 2143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 3665 0.170116 CTGCTCGAGAGGACACAGAC 59.830 60.0 18.75 0.00 0.00 3.51 F
1059 4069 0.248580 CGCATAGGTACGCCGTACAA 60.249 55.0 26.72 15.56 40.41 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 6013 0.390860 TTGCAACCCCATTTCAACGG 59.609 50.0 0.00 0.0 0.00 4.44 R
2871 6631 0.763604 TCACCCCACCGGTTCACTAA 60.764 55.0 2.97 0.0 45.36 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 3198 2.352388 GGTAATGCTAACTGGCGAACA 58.648 47.619 0.00 0.00 34.52 3.18
264 3211 2.710971 CGAACACTCGCACTCGCTG 61.711 63.158 0.00 0.00 38.45 5.18
358 3309 6.933514 AAAATTGTCATCCCCATACAACTT 57.066 33.333 0.00 0.00 36.06 2.66
364 3315 9.707957 ATTGTCATCCCCATACAACTTAAATTA 57.292 29.630 0.00 0.00 36.06 1.40
365 3316 8.514330 TGTCATCCCCATACAACTTAAATTAC 57.486 34.615 0.00 0.00 0.00 1.89
367 3318 6.768861 TCATCCCCATACAACTTAAATTACCG 59.231 38.462 0.00 0.00 0.00 4.02
385 3336 4.720530 ACCGTGAAAAGTAAACTAAGCG 57.279 40.909 0.00 0.00 0.00 4.68
386 3337 3.059393 ACCGTGAAAAGTAAACTAAGCGC 60.059 43.478 0.00 0.00 0.00 5.92
391 3342 5.178067 GTGAAAAGTAAACTAAGCGCAGGTA 59.822 40.000 11.47 0.00 37.06 3.08
393 3344 5.857822 AAAGTAAACTAAGCGCAGGTAAG 57.142 39.130 11.47 1.20 37.06 2.34
409 3360 5.529060 GCAGGTAAGATGGTTAGATTCCTTG 59.471 44.000 0.00 0.00 0.00 3.61
497 3448 4.655762 TTATCCTCCTCATGAGACGTTG 57.344 45.455 24.62 6.94 44.42 4.10
531 3482 3.244112 GGGTCCTACCTGATTCGGTATTG 60.244 52.174 7.53 4.20 38.76 1.90
550 3501 4.320546 TTGTCCACATCCTCCATTTCAT 57.679 40.909 0.00 0.00 0.00 2.57
572 3523 2.550978 CGTGGAAAGGTCGAGCATATT 58.449 47.619 18.15 8.64 0.00 1.28
598 3551 7.449395 TCTGAAAGAAATGAAATCCACATCACT 59.551 33.333 0.00 0.00 42.31 3.41
620 3573 1.619432 GGATGCAGGGTTTCATTCCCA 60.619 52.381 3.79 0.00 46.82 4.37
622 3575 0.482446 TGCAGGGTTTCATTCCCAGT 59.518 50.000 3.79 0.00 46.82 4.00
691 3656 2.043450 ACTCCCCCTGCTCGAGAG 60.043 66.667 18.75 10.58 0.00 3.20
700 3665 0.170116 CTGCTCGAGAGGACACAGAC 59.830 60.000 18.75 0.00 0.00 3.51
701 3666 0.537371 TGCTCGAGAGGACACAGACA 60.537 55.000 18.75 0.00 0.00 3.41
711 3676 2.037772 AGGACACAGACAGTTGATGACC 59.962 50.000 0.00 0.00 0.00 4.02
712 3677 2.224281 GGACACAGACAGTTGATGACCA 60.224 50.000 0.00 0.00 0.00 4.02
713 3678 3.557898 GGACACAGACAGTTGATGACCAT 60.558 47.826 0.00 0.00 0.00 3.55
714 3679 3.405831 ACACAGACAGTTGATGACCATG 58.594 45.455 0.00 0.00 0.00 3.66
715 3680 2.745821 CACAGACAGTTGATGACCATGG 59.254 50.000 11.19 11.19 0.00 3.66
716 3681 2.373169 ACAGACAGTTGATGACCATGGT 59.627 45.455 19.89 19.89 0.00 3.55
717 3682 3.582647 ACAGACAGTTGATGACCATGGTA 59.417 43.478 19.80 6.95 0.00 3.25
718 3683 4.186926 CAGACAGTTGATGACCATGGTAG 58.813 47.826 19.80 3.15 0.00 3.18
719 3684 2.939103 GACAGTTGATGACCATGGTAGC 59.061 50.000 19.80 10.72 0.00 3.58
720 3685 2.573462 ACAGTTGATGACCATGGTAGCT 59.427 45.455 19.80 6.65 0.00 3.32
721 3686 2.941064 CAGTTGATGACCATGGTAGCTG 59.059 50.000 19.80 15.61 0.00 4.24
722 3687 2.092753 AGTTGATGACCATGGTAGCTGG 60.093 50.000 19.80 8.34 39.80 4.85
723 3688 0.839277 TGATGACCATGGTAGCTGGG 59.161 55.000 19.80 7.81 38.14 4.45
724 3689 1.131638 GATGACCATGGTAGCTGGGA 58.868 55.000 19.80 0.00 38.14 4.37
725 3690 1.701847 GATGACCATGGTAGCTGGGAT 59.298 52.381 19.80 1.21 38.14 3.85
726 3691 0.839277 TGACCATGGTAGCTGGGATG 59.161 55.000 19.80 0.00 38.14 3.51
727 3692 1.131638 GACCATGGTAGCTGGGATGA 58.868 55.000 19.80 0.00 38.14 2.92
740 3705 2.738846 CTGGGATGACTTGTCGACAAAG 59.261 50.000 29.32 23.74 35.15 2.77
751 3716 5.766174 ACTTGTCGACAAAGCCCTTTTATTA 59.234 36.000 29.32 4.62 35.15 0.98
752 3717 5.873179 TGTCGACAAAGCCCTTTTATTAG 57.127 39.130 17.62 0.00 0.00 1.73
753 3718 4.155280 TGTCGACAAAGCCCTTTTATTAGC 59.845 41.667 17.62 0.00 0.00 3.09
754 3719 4.155280 GTCGACAAAGCCCTTTTATTAGCA 59.845 41.667 11.55 0.00 0.00 3.49
755 3720 4.394920 TCGACAAAGCCCTTTTATTAGCAG 59.605 41.667 0.00 0.00 0.00 4.24
756 3721 4.424626 GACAAAGCCCTTTTATTAGCAGC 58.575 43.478 0.00 0.00 0.00 5.25
757 3722 3.195610 ACAAAGCCCTTTTATTAGCAGCC 59.804 43.478 0.00 0.00 0.00 4.85
758 3723 2.826674 AGCCCTTTTATTAGCAGCCA 57.173 45.000 0.00 0.00 0.00 4.75
759 3724 2.659428 AGCCCTTTTATTAGCAGCCAG 58.341 47.619 0.00 0.00 0.00 4.85
760 3725 2.024941 AGCCCTTTTATTAGCAGCCAGT 60.025 45.455 0.00 0.00 0.00 4.00
761 3726 2.359214 GCCCTTTTATTAGCAGCCAGTC 59.641 50.000 0.00 0.00 0.00 3.51
762 3727 2.614057 CCCTTTTATTAGCAGCCAGTCG 59.386 50.000 0.00 0.00 0.00 4.18
763 3728 3.531538 CCTTTTATTAGCAGCCAGTCGA 58.468 45.455 0.00 0.00 0.00 4.20
764 3729 3.938963 CCTTTTATTAGCAGCCAGTCGAA 59.061 43.478 0.00 0.00 0.00 3.71
805 3770 2.805353 CTCCACGACGTCGGCAAG 60.805 66.667 37.89 26.65 44.95 4.01
806 3771 3.263503 CTCCACGACGTCGGCAAGA 62.264 63.158 37.89 26.10 44.95 3.02
807 3772 2.126071 CCACGACGTCGGCAAGAT 60.126 61.111 37.89 16.47 44.95 2.40
808 3773 2.444624 CCACGACGTCGGCAAGATG 61.445 63.158 37.89 25.84 44.95 2.90
818 3828 3.724494 GCAAGATGCCGCCTAGTC 58.276 61.111 0.00 0.00 37.42 2.59
832 3842 5.047519 GCCGCCTAGTCCTATATAAAGAACA 60.048 44.000 0.00 0.00 0.00 3.18
833 3843 6.622549 CCGCCTAGTCCTATATAAAGAACAG 58.377 44.000 0.00 0.00 0.00 3.16
834 3844 6.208994 CCGCCTAGTCCTATATAAAGAACAGT 59.791 42.308 0.00 0.00 0.00 3.55
836 3846 8.142551 CGCCTAGTCCTATATAAAGAACAGTTT 58.857 37.037 0.00 0.00 0.00 2.66
886 3896 9.679661 TTAAAGATATCACATTTAAGCTCCACA 57.320 29.630 5.32 0.00 0.00 4.17
887 3897 8.579850 AAAGATATCACATTTAAGCTCCACAA 57.420 30.769 5.32 0.00 0.00 3.33
888 3898 8.579850 AAGATATCACATTTAAGCTCCACAAA 57.420 30.769 5.32 0.00 0.00 2.83
889 3899 8.757982 AGATATCACATTTAAGCTCCACAAAT 57.242 30.769 5.32 0.00 0.00 2.32
890 3900 9.851686 AGATATCACATTTAAGCTCCACAAATA 57.148 29.630 5.32 0.00 0.00 1.40
903 3913 9.573166 AAGCTCCACAAATATATAATACAGCAA 57.427 29.630 0.00 0.00 0.00 3.91
904 3914 9.003658 AGCTCCACAAATATATAATACAGCAAC 57.996 33.333 0.00 0.00 0.00 4.17
905 3915 8.783093 GCTCCACAAATATATAATACAGCAACA 58.217 33.333 0.00 0.00 0.00 3.33
952 3962 9.930693 AAAAATAGACCACAAACAAAGTAAACA 57.069 25.926 0.00 0.00 0.00 2.83
954 3964 9.744468 AAATAGACCACAAACAAAGTAAACATC 57.256 29.630 0.00 0.00 0.00 3.06
955 3965 6.767524 AGACCACAAACAAAGTAAACATCA 57.232 33.333 0.00 0.00 0.00 3.07
956 3966 6.795399 AGACCACAAACAAAGTAAACATCAG 58.205 36.000 0.00 0.00 0.00 2.90
957 3967 6.601613 AGACCACAAACAAAGTAAACATCAGA 59.398 34.615 0.00 0.00 0.00 3.27
958 3968 7.285401 AGACCACAAACAAAGTAAACATCAGAT 59.715 33.333 0.00 0.00 0.00 2.90
959 3969 7.781056 ACCACAAACAAAGTAAACATCAGATT 58.219 30.769 0.00 0.00 0.00 2.40
960 3970 8.908903 ACCACAAACAAAGTAAACATCAGATTA 58.091 29.630 0.00 0.00 0.00 1.75
961 3971 9.398170 CCACAAACAAAGTAAACATCAGATTAG 57.602 33.333 0.00 0.00 0.00 1.73
978 3988 3.897141 TTAGATGTGACATAACGGCCA 57.103 42.857 2.24 0.00 0.00 5.36
1058 4068 1.356270 CGCATAGGTACGCCGTACA 59.644 57.895 26.72 9.66 40.41 2.90
1059 4069 0.248580 CGCATAGGTACGCCGTACAA 60.249 55.000 26.72 15.56 40.41 2.41
1067 4077 0.896923 TACGCCGTACAAGGAACCAT 59.103 50.000 0.00 0.00 0.00 3.55
1383 4402 7.591421 TTAATTAGGATCGGTATGTGACTCA 57.409 36.000 0.00 0.00 0.00 3.41
1384 4403 5.713792 ATTAGGATCGGTATGTGACTCAG 57.286 43.478 0.00 0.00 0.00 3.35
1385 4404 3.019799 AGGATCGGTATGTGACTCAGT 57.980 47.619 0.00 0.00 0.00 3.41
1386 4405 2.690497 AGGATCGGTATGTGACTCAGTG 59.310 50.000 0.00 0.00 0.00 3.66
1387 4406 2.688446 GGATCGGTATGTGACTCAGTGA 59.312 50.000 0.00 0.00 0.00 3.41
1388 4407 3.489398 GGATCGGTATGTGACTCAGTGAC 60.489 52.174 0.00 0.00 0.00 3.67
1389 4408 2.791655 TCGGTATGTGACTCAGTGACT 58.208 47.619 0.00 0.00 0.00 3.41
1390 4409 2.488153 TCGGTATGTGACTCAGTGACTG 59.512 50.000 6.18 6.18 0.00 3.51
1406 4427 0.741326 ACTGTGTAGCGCTGATCGAT 59.259 50.000 22.90 0.00 41.67 3.59
1468 4554 1.970640 GGGCAAGAAAAACATGGACCT 59.029 47.619 0.00 0.00 0.00 3.85
1471 4557 4.450976 GGCAAGAAAAACATGGACCTTTT 58.549 39.130 0.00 0.00 0.00 2.27
1472 4558 4.273235 GGCAAGAAAAACATGGACCTTTTG 59.727 41.667 0.00 0.00 0.00 2.44
1473 4559 4.260743 GCAAGAAAAACATGGACCTTTTGC 60.261 41.667 0.00 3.21 0.00 3.68
1474 4560 5.118286 CAAGAAAAACATGGACCTTTTGCT 58.882 37.500 0.00 0.00 27.90 3.91
1475 4561 4.948847 AGAAAAACATGGACCTTTTGCTC 58.051 39.130 0.00 0.00 0.00 4.26
1552 4679 1.137614 GCAGACGCAGAGATGTCGA 59.862 57.895 0.00 0.00 40.05 4.20
1553 4680 1.136872 GCAGACGCAGAGATGTCGAC 61.137 60.000 9.11 9.11 40.05 4.20
1562 4689 3.365264 GCAGAGATGTCGACAAATTTGCA 60.365 43.478 28.66 8.26 30.85 4.08
1567 4694 4.977963 AGATGTCGACAAATTTGCAGTTTG 59.022 37.500 24.13 19.22 41.22 2.93
1584 4711 2.488153 GTTTGACCTGAAATTCCCCTCG 59.512 50.000 0.00 0.00 0.00 4.63
1626 4753 0.881118 ACTTTATGTTGCAGGCACCG 59.119 50.000 0.00 0.00 0.00 4.94
1693 4820 3.849953 GATGGCCAACGTCGACGC 61.850 66.667 35.92 20.23 44.43 5.19
1796 4923 3.889227 GCTGCTTGCACCATACGA 58.111 55.556 0.00 0.00 42.31 3.43
1797 4924 2.170738 GCTGCTTGCACCATACGAA 58.829 52.632 0.00 0.00 42.31 3.85
1798 4925 0.734889 GCTGCTTGCACCATACGAAT 59.265 50.000 0.00 0.00 42.31 3.34
1799 4926 1.532505 GCTGCTTGCACCATACGAATG 60.533 52.381 0.00 0.00 42.31 2.67
1800 4927 2.009051 CTGCTTGCACCATACGAATGA 58.991 47.619 0.00 0.00 34.84 2.57
1801 4928 2.615447 CTGCTTGCACCATACGAATGAT 59.385 45.455 0.00 0.00 34.84 2.45
1802 4929 2.355444 TGCTTGCACCATACGAATGATG 59.645 45.455 0.00 0.00 34.84 3.07
1803 4930 2.613595 GCTTGCACCATACGAATGATGA 59.386 45.455 0.00 0.00 34.84 2.92
1804 4931 3.251729 GCTTGCACCATACGAATGATGAT 59.748 43.478 0.00 0.00 34.84 2.45
1805 4932 4.612259 GCTTGCACCATACGAATGATGATC 60.612 45.833 0.00 0.00 34.84 2.92
1806 4933 3.402110 TGCACCATACGAATGATGATCC 58.598 45.455 0.00 0.00 34.84 3.36
1807 4934 2.744202 GCACCATACGAATGATGATCCC 59.256 50.000 0.00 0.00 34.84 3.85
1808 4935 3.806858 GCACCATACGAATGATGATCCCA 60.807 47.826 0.00 0.00 34.84 4.37
1809 4936 4.582869 CACCATACGAATGATGATCCCAT 58.417 43.478 0.00 0.00 34.84 4.00
1810 4937 5.733676 CACCATACGAATGATGATCCCATA 58.266 41.667 0.00 0.00 34.84 2.74
1811 4938 5.582269 CACCATACGAATGATGATCCCATAC 59.418 44.000 0.00 0.00 34.84 2.39
1812 4939 5.248248 ACCATACGAATGATGATCCCATACA 59.752 40.000 0.00 0.00 34.84 2.29
1813 4940 5.582269 CCATACGAATGATGATCCCATACAC 59.418 44.000 0.00 0.00 34.84 2.90
1814 4941 4.687901 ACGAATGATGATCCCATACACA 57.312 40.909 0.00 0.00 32.09 3.72
1815 4942 5.034852 ACGAATGATGATCCCATACACAA 57.965 39.130 0.00 0.00 32.09 3.33
1816 4943 5.436175 ACGAATGATGATCCCATACACAAA 58.564 37.500 0.00 0.00 32.09 2.83
1817 4944 5.885352 ACGAATGATGATCCCATACACAAAA 59.115 36.000 0.00 0.00 32.09 2.44
1818 4945 6.376864 ACGAATGATGATCCCATACACAAAAA 59.623 34.615 0.00 0.00 32.09 1.94
1835 4962 2.206576 AAAACTCTCTCACCCCATGC 57.793 50.000 0.00 0.00 0.00 4.06
1836 4963 1.366319 AAACTCTCTCACCCCATGCT 58.634 50.000 0.00 0.00 0.00 3.79
1837 4964 0.617413 AACTCTCTCACCCCATGCTG 59.383 55.000 0.00 0.00 0.00 4.41
1838 4965 1.153208 CTCTCTCACCCCATGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
1839 4966 1.614525 TCTCTCACCCCATGCTGCT 60.615 57.895 0.00 0.00 0.00 4.24
1840 4967 1.203441 TCTCTCACCCCATGCTGCTT 61.203 55.000 0.00 0.00 0.00 3.91
1841 4968 1.001764 TCTCACCCCATGCTGCTTG 60.002 57.895 8.44 8.44 0.00 4.01
1842 4969 2.677524 TCACCCCATGCTGCTTGC 60.678 61.111 9.81 0.00 43.25 4.01
1860 4987 4.779987 CTTGCACCATACGAATGATGATG 58.220 43.478 0.00 0.00 34.84 3.07
1897 5038 3.118738 ACCTACGTCAGACCAATCATTCC 60.119 47.826 0.00 0.00 0.00 3.01
2053 5763 6.477033 AGTGTGAAATAATCGATCGAAGAAGG 59.523 38.462 23.50 0.00 43.58 3.46
2054 5764 5.753438 TGTGAAATAATCGATCGAAGAAGGG 59.247 40.000 23.50 0.00 43.58 3.95
2158 5874 4.837972 AGGTGCACTATCTTTTCTCTTCC 58.162 43.478 17.98 0.00 0.00 3.46
2209 5925 4.644685 GGCCAAAGTATGTGATGTGGTTAT 59.355 41.667 0.00 0.00 0.00 1.89
2220 5944 5.163447 TGTGATGTGGTTATCAGTAGTAGGC 60.163 44.000 0.00 0.00 37.72 3.93
2235 5959 3.833732 AGTAGGCTCCGATCAAGATGTA 58.166 45.455 0.00 0.00 0.00 2.29
2246 5970 4.512571 CGATCAAGATGTATTGCCATCACA 59.487 41.667 4.20 0.00 43.00 3.58
2248 5972 6.458615 CGATCAAGATGTATTGCCATCACAAA 60.459 38.462 4.20 0.00 43.00 2.83
2255 5983 4.133796 GCCATCACAAAGGCGCCC 62.134 66.667 26.15 5.07 41.70 6.13
2279 6013 9.454859 CCCTTTATTTTATATGGAGGAGATGAC 57.545 37.037 0.00 0.00 0.00 3.06
2282 6016 6.688073 ATTTTATATGGAGGAGATGACCGT 57.312 37.500 0.00 0.00 34.73 4.83
2290 6024 2.939103 GAGGAGATGACCGTTGAAATGG 59.061 50.000 0.00 0.00 41.00 3.16
2293 6027 1.354368 AGATGACCGTTGAAATGGGGT 59.646 47.619 6.27 0.00 39.47 4.95
2316 6050 3.103738 GCAATGCAAGTGTTCGATCATC 58.896 45.455 0.00 0.00 32.28 2.92
2334 6068 7.948447 TCGATCATCCTTCCTTTTCCTACTATA 59.052 37.037 0.00 0.00 0.00 1.31
2399 6133 9.869757 GAGTTAAATGCAACAAATAACCCTAAT 57.130 29.630 0.00 0.00 0.00 1.73
2404 6138 6.793492 TGCAACAAATAACCCTAATTTTGC 57.207 33.333 0.00 0.00 33.60 3.68
2408 6142 5.800296 ACAAATAACCCTAATTTTGCCACC 58.200 37.500 0.00 0.00 33.43 4.61
2409 6143 4.729227 AATAACCCTAATTTTGCCACCG 57.271 40.909 0.00 0.00 0.00 4.94
2421 6155 3.351794 TTGCCACCGTAAATCATACCA 57.648 42.857 0.00 0.00 0.00 3.25
2432 6166 7.505585 ACCGTAAATCATACCATCCAATGAAAT 59.494 33.333 0.00 0.00 35.82 2.17
2458 6194 0.623723 CCTTAGCTGGTTAAGGGCCA 59.376 55.000 6.18 0.00 43.91 5.36
2459 6195 1.215423 CCTTAGCTGGTTAAGGGCCAT 59.785 52.381 6.18 0.00 43.91 4.40
2467 6203 4.340617 CTGGTTAAGGGCCATGTCTTTTA 58.659 43.478 6.18 0.00 35.19 1.52
2476 6212 7.208064 AGGGCCATGTCTTTTAGAACTTATA 57.792 36.000 6.18 0.00 0.00 0.98
2498 6234 3.256631 AGGTGACTGCCAAAAATAAGCTG 59.743 43.478 0.00 0.00 41.13 4.24
2508 6244 4.273318 CAAAAATAAGCTGCCCTCTACCT 58.727 43.478 0.00 0.00 0.00 3.08
2513 6249 0.469144 AGCTGCCCTCTACCTAGCTC 60.469 60.000 0.00 0.00 40.44 4.09
2547 6283 5.591099 GGACAAAATTGCTTGAGAAAGACA 58.409 37.500 0.00 0.00 0.00 3.41
2564 6300 8.441312 AGAAAGACAAAAAGACAATACGGTTA 57.559 30.769 0.00 0.00 0.00 2.85
2572 6308 6.997239 AAAGACAATACGGTTAATTCCTCC 57.003 37.500 0.00 0.00 0.00 4.30
2578 6314 1.411612 ACGGTTAATTCCTCCTAGCCG 59.588 52.381 0.00 0.00 44.60 5.52
2686 6444 8.160106 AGATTTGTGACCATTCTCTCTACTTTT 58.840 33.333 0.00 0.00 0.00 2.27
2780 6539 8.035394 GGGAAAAATAAAAAGAGGAAAGCTAGG 58.965 37.037 0.00 0.00 0.00 3.02
2866 6626 5.190677 TCAGGAAATAAATCCGGGAAGAAC 58.809 41.667 0.00 0.00 44.60 3.01
2871 6631 7.180229 AGGAAATAAATCCGGGAAGAACAATTT 59.820 33.333 0.00 0.00 44.60 1.82
2880 6640 5.458015 CGGGAAGAACAATTTTAGTGAACC 58.542 41.667 0.00 0.00 0.00 3.62
2901 6661 0.605589 GTGGGGTGAGACTGTGAGAG 59.394 60.000 0.00 0.00 0.00 3.20
2903 6663 0.251832 GGGGTGAGACTGTGAGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
2906 6666 2.175202 GGTGAGACTGTGAGAGGATGT 58.825 52.381 0.00 0.00 0.00 3.06
2909 6669 4.142271 GGTGAGACTGTGAGAGGATGTAAG 60.142 50.000 0.00 0.00 0.00 2.34
2910 6670 4.702612 GTGAGACTGTGAGAGGATGTAAGA 59.297 45.833 0.00 0.00 0.00 2.10
2916 6676 6.226787 ACTGTGAGAGGATGTAAGAAAACTG 58.773 40.000 0.00 0.00 0.00 3.16
2931 6691 3.889520 AAACTGGAGGAATAGGTCGAC 57.110 47.619 7.13 7.13 0.00 4.20
2939 6699 2.626743 AGGAATAGGTCGACCCATTACG 59.373 50.000 30.82 0.00 36.42 3.18
2952 6712 1.408702 CCATTACGGGCCAAAAGGATG 59.591 52.381 4.39 0.43 0.00 3.51
2961 6721 3.588955 GGCCAAAAGGATGTGTGATTTC 58.411 45.455 0.00 0.00 0.00 2.17
2962 6722 3.259123 GGCCAAAAGGATGTGTGATTTCT 59.741 43.478 0.00 0.00 0.00 2.52
2968 6728 4.478206 AGGATGTGTGATTTCTCGACAT 57.522 40.909 0.00 0.00 0.00 3.06
3018 6778 4.954442 GACATTTAGTCGCAAGTTGGTAC 58.046 43.478 4.75 0.00 37.53 3.34
3019 6779 4.638304 ACATTTAGTCGCAAGTTGGTACT 58.362 39.130 4.75 4.09 39.48 2.73
3020 6780 5.061179 ACATTTAGTCGCAAGTTGGTACTT 58.939 37.500 4.75 0.00 45.40 2.24
3021 6781 5.178809 ACATTTAGTCGCAAGTTGGTACTTC 59.821 40.000 4.75 0.00 42.67 3.01
3022 6782 2.165319 AGTCGCAAGTTGGTACTTCC 57.835 50.000 4.75 0.00 42.67 3.46
3023 6783 1.692519 AGTCGCAAGTTGGTACTTCCT 59.307 47.619 4.75 0.00 42.67 3.36
3024 6784 2.895404 AGTCGCAAGTTGGTACTTCCTA 59.105 45.455 4.75 0.00 42.67 2.94
3025 6785 3.514309 AGTCGCAAGTTGGTACTTCCTAT 59.486 43.478 4.75 0.00 42.67 2.57
3026 6786 4.020485 AGTCGCAAGTTGGTACTTCCTATT 60.020 41.667 4.75 0.00 42.67 1.73
3027 6787 5.186409 AGTCGCAAGTTGGTACTTCCTATTA 59.814 40.000 4.75 0.00 42.67 0.98
3028 6788 6.047231 GTCGCAAGTTGGTACTTCCTATTAT 58.953 40.000 4.75 0.00 42.67 1.28
3029 6789 6.537660 GTCGCAAGTTGGTACTTCCTATTATT 59.462 38.462 4.75 0.00 42.67 1.40
3030 6790 6.759827 TCGCAAGTTGGTACTTCCTATTATTC 59.240 38.462 4.75 0.00 42.67 1.75
3031 6791 6.292168 CGCAAGTTGGTACTTCCTATTATTCG 60.292 42.308 4.75 0.00 42.67 3.34
3032 6792 6.018180 GCAAGTTGGTACTTCCTATTATTCGG 60.018 42.308 4.75 0.00 42.67 4.30
3033 6793 6.803366 AGTTGGTACTTCCTATTATTCGGT 57.197 37.500 0.00 0.00 37.07 4.69
3034 6794 7.191593 AGTTGGTACTTCCTATTATTCGGTT 57.808 36.000 0.00 0.00 37.07 4.44
3035 6795 8.310122 AGTTGGTACTTCCTATTATTCGGTTA 57.690 34.615 0.00 0.00 37.07 2.85
3036 6796 8.931568 AGTTGGTACTTCCTATTATTCGGTTAT 58.068 33.333 0.00 0.00 37.07 1.89
3039 6799 8.526147 TGGTACTTCCTATTATTCGGTTATAGC 58.474 37.037 0.00 0.00 37.07 2.97
3040 6800 7.699812 GGTACTTCCTATTATTCGGTTATAGCG 59.300 40.741 0.00 0.00 40.97 4.26
3054 6814 8.783833 TCGGTTATAGCGAATAAGAGTAGTAT 57.216 34.615 0.00 0.00 45.67 2.12
3055 6815 9.224267 TCGGTTATAGCGAATAAGAGTAGTATT 57.776 33.333 0.00 0.00 45.67 1.89
3056 6816 9.837525 CGGTTATAGCGAATAAGAGTAGTATTT 57.162 33.333 0.00 0.00 42.41 1.40
3069 6829 7.535489 AGAGTAGTATTTTCATACAAACCGC 57.465 36.000 0.00 0.00 38.24 5.68
3070 6830 7.101054 AGAGTAGTATTTTCATACAAACCGCA 58.899 34.615 0.00 0.00 38.24 5.69
3071 6831 7.064253 AGAGTAGTATTTTCATACAAACCGCAC 59.936 37.037 0.00 0.00 38.24 5.34
3072 6832 6.877322 AGTAGTATTTTCATACAAACCGCACT 59.123 34.615 0.00 0.00 38.24 4.40
3073 6833 6.178239 AGTATTTTCATACAAACCGCACTC 57.822 37.500 0.00 0.00 38.24 3.51
3074 6834 3.907894 TTTTCATACAAACCGCACTCC 57.092 42.857 0.00 0.00 0.00 3.85
3075 6835 2.851263 TTCATACAAACCGCACTCCT 57.149 45.000 0.00 0.00 0.00 3.69
3076 6836 2.851263 TCATACAAACCGCACTCCTT 57.149 45.000 0.00 0.00 0.00 3.36
3077 6837 2.422597 TCATACAAACCGCACTCCTTG 58.577 47.619 0.00 0.00 0.00 3.61
3078 6838 2.037902 TCATACAAACCGCACTCCTTGA 59.962 45.455 0.00 0.00 0.00 3.02
3079 6839 2.851263 TACAAACCGCACTCCTTGAT 57.149 45.000 0.00 0.00 0.00 2.57
3080 6840 2.851263 ACAAACCGCACTCCTTGATA 57.149 45.000 0.00 0.00 0.00 2.15
3081 6841 3.350219 ACAAACCGCACTCCTTGATAT 57.650 42.857 0.00 0.00 0.00 1.63
3082 6842 3.270877 ACAAACCGCACTCCTTGATATC 58.729 45.455 0.00 0.00 0.00 1.63
3083 6843 2.614057 CAAACCGCACTCCTTGATATCC 59.386 50.000 0.00 0.00 0.00 2.59
3084 6844 1.794714 ACCGCACTCCTTGATATCCT 58.205 50.000 0.00 0.00 0.00 3.24
3085 6845 2.958818 ACCGCACTCCTTGATATCCTA 58.041 47.619 0.00 0.00 0.00 2.94
3086 6846 3.511477 ACCGCACTCCTTGATATCCTAT 58.489 45.455 0.00 0.00 0.00 2.57
3087 6847 3.259374 ACCGCACTCCTTGATATCCTATG 59.741 47.826 0.00 0.00 0.00 2.23
3088 6848 3.368843 CCGCACTCCTTGATATCCTATGG 60.369 52.174 0.00 0.00 0.00 2.74
3089 6849 3.368843 CGCACTCCTTGATATCCTATGGG 60.369 52.174 0.00 0.00 0.00 4.00
3090 6850 3.620966 GCACTCCTTGATATCCTATGGGC 60.621 52.174 0.00 0.00 0.00 5.36
3091 6851 2.834549 ACTCCTTGATATCCTATGGGCG 59.165 50.000 0.00 0.00 0.00 6.13
3092 6852 2.834549 CTCCTTGATATCCTATGGGCGT 59.165 50.000 0.00 0.00 0.00 5.68
3093 6853 3.248024 TCCTTGATATCCTATGGGCGTT 58.752 45.455 0.00 0.00 0.00 4.84
3094 6854 3.007940 TCCTTGATATCCTATGGGCGTTG 59.992 47.826 0.00 0.00 0.00 4.10
3095 6855 3.338249 CTTGATATCCTATGGGCGTTGG 58.662 50.000 0.00 0.00 0.00 3.77
3096 6856 1.003118 TGATATCCTATGGGCGTTGGC 59.997 52.381 0.00 0.00 38.90 4.52
3114 6874 2.192605 CCCAATTGGCTTCCCTTCG 58.807 57.895 19.75 0.00 0.00 3.79
3115 6875 0.611896 CCCAATTGGCTTCCCTTCGT 60.612 55.000 19.75 0.00 0.00 3.85
3116 6876 1.256812 CCAATTGGCTTCCCTTCGTT 58.743 50.000 12.53 0.00 0.00 3.85
3117 6877 1.618343 CCAATTGGCTTCCCTTCGTTT 59.382 47.619 12.53 0.00 0.00 3.60
3118 6878 2.823154 CCAATTGGCTTCCCTTCGTTTA 59.177 45.455 12.53 0.00 0.00 2.01
3119 6879 3.119495 CCAATTGGCTTCCCTTCGTTTAG 60.119 47.826 12.53 0.00 0.00 1.85
3120 6880 1.530323 TTGGCTTCCCTTCGTTTAGC 58.470 50.000 0.00 0.00 0.00 3.09
3121 6881 0.398696 TGGCTTCCCTTCGTTTAGCA 59.601 50.000 0.00 0.00 33.60 3.49
3122 6882 1.004277 TGGCTTCCCTTCGTTTAGCAT 59.996 47.619 0.00 0.00 33.60 3.79
3123 6883 2.092323 GGCTTCCCTTCGTTTAGCATT 58.908 47.619 0.00 0.00 33.60 3.56
3124 6884 2.492088 GGCTTCCCTTCGTTTAGCATTT 59.508 45.455 0.00 0.00 33.60 2.32
3125 6885 3.692593 GGCTTCCCTTCGTTTAGCATTTA 59.307 43.478 0.00 0.00 33.60 1.40
3126 6886 4.201920 GGCTTCCCTTCGTTTAGCATTTAG 60.202 45.833 0.00 0.00 33.60 1.85
3127 6887 4.730903 GCTTCCCTTCGTTTAGCATTTAGC 60.731 45.833 0.00 0.00 46.19 3.09
3145 6905 9.070149 GCATTTAGCAGTTTTCTTTCTATTCTG 57.930 33.333 0.00 0.00 44.79 3.02
3148 6908 9.950680 TTTAGCAGTTTTCTTTCTATTCTGTTG 57.049 29.630 0.00 0.00 0.00 3.33
3149 6909 6.442112 AGCAGTTTTCTTTCTATTCTGTTGC 58.558 36.000 0.00 0.00 0.00 4.17
3150 6910 6.039717 AGCAGTTTTCTTTCTATTCTGTTGCA 59.960 34.615 0.00 0.00 0.00 4.08
3151 6911 6.697019 GCAGTTTTCTTTCTATTCTGTTGCAA 59.303 34.615 0.00 0.00 0.00 4.08
3152 6912 7.383300 GCAGTTTTCTTTCTATTCTGTTGCAAT 59.617 33.333 0.59 0.00 0.00 3.56
3153 6913 9.252962 CAGTTTTCTTTCTATTCTGTTGCAATT 57.747 29.630 0.59 0.00 0.00 2.32
3154 6914 9.822185 AGTTTTCTTTCTATTCTGTTGCAATTT 57.178 25.926 0.59 0.00 0.00 1.82
3159 6919 9.683069 TCTTTCTATTCTGTTGCAATTTTCTTC 57.317 29.630 0.59 0.00 0.00 2.87
3160 6920 9.467258 CTTTCTATTCTGTTGCAATTTTCTTCA 57.533 29.630 0.59 0.00 0.00 3.02
3161 6921 9.467258 TTTCTATTCTGTTGCAATTTTCTTCAG 57.533 29.630 0.59 3.35 0.00 3.02
3162 6922 7.596494 TCTATTCTGTTGCAATTTTCTTCAGG 58.404 34.615 0.59 0.00 0.00 3.86
3163 6923 5.850557 TTCTGTTGCAATTTTCTTCAGGA 57.149 34.783 0.59 0.00 0.00 3.86
3164 6924 5.186996 TCTGTTGCAATTTTCTTCAGGAC 57.813 39.130 0.59 0.00 0.00 3.85
3165 6925 4.644234 TCTGTTGCAATTTTCTTCAGGACA 59.356 37.500 0.59 0.00 0.00 4.02
3166 6926 4.681744 TGTTGCAATTTTCTTCAGGACAC 58.318 39.130 0.59 0.00 0.00 3.67
3167 6927 3.624326 TGCAATTTTCTTCAGGACACG 57.376 42.857 0.00 0.00 0.00 4.49
3168 6928 2.948979 TGCAATTTTCTTCAGGACACGT 59.051 40.909 0.00 0.00 0.00 4.49
3169 6929 3.380004 TGCAATTTTCTTCAGGACACGTT 59.620 39.130 0.00 0.00 0.00 3.99
3170 6930 4.576873 TGCAATTTTCTTCAGGACACGTTA 59.423 37.500 0.00 0.00 0.00 3.18
3171 6931 5.240623 TGCAATTTTCTTCAGGACACGTTAT 59.759 36.000 0.00 0.00 0.00 1.89
3172 6932 6.428465 TGCAATTTTCTTCAGGACACGTTATA 59.572 34.615 0.00 0.00 0.00 0.98
3173 6933 6.741358 GCAATTTTCTTCAGGACACGTTATAC 59.259 38.462 0.00 0.00 0.00 1.47
3174 6934 6.980051 ATTTTCTTCAGGACACGTTATACC 57.020 37.500 0.00 0.00 0.00 2.73
3175 6935 5.733620 TTTCTTCAGGACACGTTATACCT 57.266 39.130 0.00 0.00 0.00 3.08
3176 6936 6.839124 TTTCTTCAGGACACGTTATACCTA 57.161 37.500 0.00 0.00 0.00 3.08
3177 6937 7.414222 TTTCTTCAGGACACGTTATACCTAT 57.586 36.000 0.00 0.00 0.00 2.57
3178 6938 7.414222 TTCTTCAGGACACGTTATACCTATT 57.586 36.000 0.00 0.00 0.00 1.73
3179 6939 8.523915 TTCTTCAGGACACGTTATACCTATTA 57.476 34.615 0.00 0.00 0.00 0.98
3180 6940 8.162878 TCTTCAGGACACGTTATACCTATTAG 57.837 38.462 0.00 0.00 0.00 1.73
3181 6941 7.776969 TCTTCAGGACACGTTATACCTATTAGT 59.223 37.037 0.00 0.00 0.00 2.24
3182 6942 7.886629 TCAGGACACGTTATACCTATTAGTT 57.113 36.000 0.00 0.00 0.00 2.24
3183 6943 8.297470 TCAGGACACGTTATACCTATTAGTTT 57.703 34.615 0.00 0.00 0.00 2.66
3184 6944 8.408601 TCAGGACACGTTATACCTATTAGTTTC 58.591 37.037 0.00 0.00 0.00 2.78
3185 6945 7.377928 CAGGACACGTTATACCTATTAGTTTCG 59.622 40.741 0.00 0.00 0.00 3.46
3186 6946 7.283127 AGGACACGTTATACCTATTAGTTTCGA 59.717 37.037 0.00 0.00 0.00 3.71
3187 6947 7.377131 GGACACGTTATACCTATTAGTTTCGAC 59.623 40.741 0.00 0.00 0.00 4.20
3188 6948 7.196331 ACACGTTATACCTATTAGTTTCGACC 58.804 38.462 0.00 0.00 0.00 4.79
3189 6949 7.067494 ACACGTTATACCTATTAGTTTCGACCT 59.933 37.037 0.00 0.00 0.00 3.85
3190 6950 7.377928 CACGTTATACCTATTAGTTTCGACCTG 59.622 40.741 0.00 0.00 0.00 4.00
3191 6951 7.067494 ACGTTATACCTATTAGTTTCGACCTGT 59.933 37.037 0.00 0.00 0.00 4.00
3192 6952 7.589221 CGTTATACCTATTAGTTTCGACCTGTC 59.411 40.741 0.00 0.00 0.00 3.51
3207 6967 3.671716 ACCTGTCGGTCATTTTACTTCC 58.328 45.455 0.00 0.00 40.27 3.46
3208 6968 3.071892 ACCTGTCGGTCATTTTACTTCCA 59.928 43.478 0.00 0.00 40.27 3.53
3209 6969 4.069304 CCTGTCGGTCATTTTACTTCCAA 58.931 43.478 0.00 0.00 0.00 3.53
3210 6970 4.700213 CCTGTCGGTCATTTTACTTCCAAT 59.300 41.667 0.00 0.00 0.00 3.16
3211 6971 5.878116 CCTGTCGGTCATTTTACTTCCAATA 59.122 40.000 0.00 0.00 0.00 1.90
3212 6972 6.373216 CCTGTCGGTCATTTTACTTCCAATAA 59.627 38.462 0.00 0.00 0.00 1.40
3213 6973 7.094549 CCTGTCGGTCATTTTACTTCCAATAAA 60.095 37.037 0.00 0.00 0.00 1.40
3214 6974 8.343168 TGTCGGTCATTTTACTTCCAATAAAT 57.657 30.769 0.00 0.00 0.00 1.40
3215 6975 9.451002 TGTCGGTCATTTTACTTCCAATAAATA 57.549 29.630 0.00 0.00 0.00 1.40
3216 6976 9.931210 GTCGGTCATTTTACTTCCAATAAATAG 57.069 33.333 0.00 0.00 0.00 1.73
3217 6977 9.675464 TCGGTCATTTTACTTCCAATAAATAGT 57.325 29.630 0.00 0.00 0.00 2.12
3263 7023 9.705290 TTTTATTTCCTTTTATTGAGGCTTCAC 57.295 29.630 0.00 0.00 34.17 3.18
3264 7024 6.916360 ATTTCCTTTTATTGAGGCTTCACA 57.084 33.333 0.00 0.00 34.17 3.58
3265 7025 6.723298 TTTCCTTTTATTGAGGCTTCACAA 57.277 33.333 0.00 0.00 34.17 3.33
3266 7026 5.705609 TCCTTTTATTGAGGCTTCACAAC 57.294 39.130 0.00 0.00 34.17 3.32
3267 7027 5.136828 TCCTTTTATTGAGGCTTCACAACA 58.863 37.500 0.00 0.00 34.17 3.33
3268 7028 5.774690 TCCTTTTATTGAGGCTTCACAACAT 59.225 36.000 0.00 0.00 34.17 2.71
3269 7029 5.865552 CCTTTTATTGAGGCTTCACAACATG 59.134 40.000 0.00 0.00 31.71 3.21
3270 7030 6.403866 TTTTATTGAGGCTTCACAACATGT 57.596 33.333 0.00 0.00 31.71 3.21
3271 7031 6.403866 TTTATTGAGGCTTCACAACATGTT 57.596 33.333 4.92 4.92 31.71 2.71
3272 7032 4.942761 ATTGAGGCTTCACAACATGTTT 57.057 36.364 8.77 0.00 31.71 2.83
3273 7033 4.734398 TTGAGGCTTCACAACATGTTTT 57.266 36.364 8.77 0.00 31.71 2.43
3274 7034 4.734398 TGAGGCTTCACAACATGTTTTT 57.266 36.364 8.77 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.945784 TCACCTTTATTTCATTGGTCTCCAG 59.054 40.000 0.00 0.00 33.81 3.86
165 169 4.031611 GGACTGTGGTAAGTAGGAGGAAT 58.968 47.826 0.00 0.00 0.00 3.01
229 737 0.179094 TCGCCAGTTAGCATTACCGG 60.179 55.000 0.00 0.00 0.00 5.28
264 3211 2.793278 AAACTGCCAACGTTTGATCC 57.207 45.000 3.12 0.00 33.64 3.36
295 3242 6.976349 ACAATTGTTCCGTAAAGAAGGTTTTC 59.024 34.615 4.92 0.00 0.00 2.29
364 3315 3.059393 GCGCTTAGTTTACTTTTCACGGT 60.059 43.478 0.00 0.00 0.00 4.83
365 3316 3.059461 TGCGCTTAGTTTACTTTTCACGG 60.059 43.478 9.73 0.00 0.00 4.94
367 3318 4.024302 ACCTGCGCTTAGTTTACTTTTCAC 60.024 41.667 9.73 0.00 0.00 3.18
384 3335 4.058817 GGAATCTAACCATCTTACCTGCG 58.941 47.826 0.00 0.00 0.00 5.18
385 3336 5.297569 AGGAATCTAACCATCTTACCTGC 57.702 43.478 0.00 0.00 0.00 4.85
386 3337 6.540189 CACAAGGAATCTAACCATCTTACCTG 59.460 42.308 0.00 0.00 0.00 4.00
391 3342 5.711976 CCAACACAAGGAATCTAACCATCTT 59.288 40.000 0.00 0.00 0.00 2.40
393 3344 5.253330 TCCAACACAAGGAATCTAACCATC 58.747 41.667 0.00 0.00 30.71 3.51
409 3360 1.698506 TGATGGGTTGGTTCCAACAC 58.301 50.000 28.31 26.64 46.95 3.32
449 3400 4.173036 ACGAACGATTTTCATGGCAATT 57.827 36.364 0.14 0.00 0.00 2.32
450 3401 3.848272 ACGAACGATTTTCATGGCAAT 57.152 38.095 0.14 0.00 0.00 3.56
497 3448 2.941563 TAGGACCCTCTTAGCCGGCC 62.942 65.000 26.15 5.07 0.00 6.13
531 3482 3.217626 GGATGAAATGGAGGATGTGGAC 58.782 50.000 0.00 0.00 0.00 4.02
550 3501 1.541310 ATGCTCGACCTTTCCACGGA 61.541 55.000 0.00 0.00 0.00 4.69
572 3523 7.449395 AGTGATGTGGATTTCATTTCTTTCAGA 59.551 33.333 0.00 0.00 0.00 3.27
598 3551 2.091885 GGGAATGAAACCCTGCATCCTA 60.092 50.000 0.00 0.00 43.65 2.94
622 3575 2.105134 TGCTGAGGGAAAACGAAAGGTA 59.895 45.455 0.00 0.00 0.00 3.08
670 3633 1.076923 TCGAGCAGGGGGAGTCTAC 60.077 63.158 0.00 0.00 0.00 2.59
676 3639 3.347590 TCCTCTCGAGCAGGGGGA 61.348 66.667 22.70 15.02 44.39 4.81
679 3642 1.943116 CTGTGTCCTCTCGAGCAGGG 61.943 65.000 22.70 17.28 0.00 4.45
691 3656 2.224281 TGGTCATCAACTGTCTGTGTCC 60.224 50.000 0.00 0.00 0.00 4.02
700 3665 2.941064 CAGCTACCATGGTCATCAACTG 59.059 50.000 23.76 16.00 0.00 3.16
701 3666 2.092753 CCAGCTACCATGGTCATCAACT 60.093 50.000 23.76 7.99 32.85 3.16
711 3676 2.092753 ACAAGTCATCCCAGCTACCATG 60.093 50.000 0.00 0.00 0.00 3.66
712 3677 2.171448 GACAAGTCATCCCAGCTACCAT 59.829 50.000 0.00 0.00 0.00 3.55
713 3678 1.555075 GACAAGTCATCCCAGCTACCA 59.445 52.381 0.00 0.00 0.00 3.25
714 3679 1.471676 CGACAAGTCATCCCAGCTACC 60.472 57.143 0.72 0.00 0.00 3.18
715 3680 1.476891 TCGACAAGTCATCCCAGCTAC 59.523 52.381 0.72 0.00 0.00 3.58
716 3681 1.476891 GTCGACAAGTCATCCCAGCTA 59.523 52.381 11.55 0.00 0.00 3.32
717 3682 0.247736 GTCGACAAGTCATCCCAGCT 59.752 55.000 11.55 0.00 0.00 4.24
718 3683 0.037326 TGTCGACAAGTCATCCCAGC 60.037 55.000 17.62 0.00 0.00 4.85
719 3684 2.455674 TTGTCGACAAGTCATCCCAG 57.544 50.000 26.53 0.00 0.00 4.45
720 3685 2.766313 CTTTGTCGACAAGTCATCCCA 58.234 47.619 28.21 12.25 37.15 4.37
721 3686 1.464997 GCTTTGTCGACAAGTCATCCC 59.535 52.381 28.21 10.91 37.15 3.85
722 3687 1.464997 GGCTTTGTCGACAAGTCATCC 59.535 52.381 28.21 20.72 37.15 3.51
723 3688 1.464997 GGGCTTTGTCGACAAGTCATC 59.535 52.381 28.21 17.32 37.15 2.92
724 3689 1.072331 AGGGCTTTGTCGACAAGTCAT 59.928 47.619 28.21 19.18 37.15 3.06
725 3690 0.468226 AGGGCTTTGTCGACAAGTCA 59.532 50.000 28.21 15.05 37.15 3.41
726 3691 1.594331 AAGGGCTTTGTCGACAAGTC 58.406 50.000 28.21 22.54 37.15 3.01
727 3692 2.052782 AAAGGGCTTTGTCGACAAGT 57.947 45.000 28.21 11.29 37.15 3.16
740 3705 2.359214 GACTGGCTGCTAATAAAAGGGC 59.641 50.000 0.00 0.00 0.00 5.19
751 3716 1.077930 ATGCATTCGACTGGCTGCT 60.078 52.632 4.82 0.00 35.66 4.24
752 3717 1.063649 CATGCATTCGACTGGCTGC 59.936 57.895 0.00 0.00 35.21 5.25
753 3718 0.806868 AACATGCATTCGACTGGCTG 59.193 50.000 0.00 3.32 0.00 4.85
754 3719 2.009774 GTAACATGCATTCGACTGGCT 58.990 47.619 0.00 0.00 0.00 4.75
755 3720 1.737236 TGTAACATGCATTCGACTGGC 59.263 47.619 0.00 0.03 0.00 4.85
756 3721 2.352651 CCTGTAACATGCATTCGACTGG 59.647 50.000 0.00 4.88 0.00 4.00
757 3722 3.261580 TCCTGTAACATGCATTCGACTG 58.738 45.455 0.00 0.00 0.00 3.51
758 3723 3.525537 CTCCTGTAACATGCATTCGACT 58.474 45.455 0.00 0.00 0.00 4.18
759 3724 2.030946 GCTCCTGTAACATGCATTCGAC 59.969 50.000 0.00 0.00 0.00 4.20
760 3725 2.279741 GCTCCTGTAACATGCATTCGA 58.720 47.619 0.00 0.00 0.00 3.71
761 3726 1.331756 GGCTCCTGTAACATGCATTCG 59.668 52.381 0.00 0.00 0.00 3.34
762 3727 1.331756 CGGCTCCTGTAACATGCATTC 59.668 52.381 0.00 0.00 0.00 2.67
763 3728 1.382522 CGGCTCCTGTAACATGCATT 58.617 50.000 0.00 0.00 0.00 3.56
764 3729 1.097547 GCGGCTCCTGTAACATGCAT 61.098 55.000 0.00 0.00 0.00 3.96
805 3770 5.360144 TCTTTATATAGGACTAGGCGGCATC 59.640 44.000 13.08 5.49 0.00 3.91
806 3771 5.269991 TCTTTATATAGGACTAGGCGGCAT 58.730 41.667 13.08 0.00 0.00 4.40
807 3772 4.669700 TCTTTATATAGGACTAGGCGGCA 58.330 43.478 13.08 0.00 0.00 5.69
808 3773 5.047519 TGTTCTTTATATAGGACTAGGCGGC 60.048 44.000 0.00 0.00 0.00 6.53
860 3870 9.679661 TGTGGAGCTTAAATGTGATATCTTTAA 57.320 29.630 3.98 6.30 0.00 1.52
861 3871 9.679661 TTGTGGAGCTTAAATGTGATATCTTTA 57.320 29.630 3.98 0.00 0.00 1.85
862 3872 8.579850 TTGTGGAGCTTAAATGTGATATCTTT 57.420 30.769 3.98 0.00 0.00 2.52
863 3873 8.579850 TTTGTGGAGCTTAAATGTGATATCTT 57.420 30.769 3.98 0.00 0.00 2.40
864 3874 8.757982 ATTTGTGGAGCTTAAATGTGATATCT 57.242 30.769 3.98 0.00 0.00 1.98
877 3887 9.573166 TTGCTGTATTATATATTTGTGGAGCTT 57.427 29.630 0.00 0.00 0.00 3.74
878 3888 9.003658 GTTGCTGTATTATATATTTGTGGAGCT 57.996 33.333 0.00 0.00 0.00 4.09
879 3889 8.783093 TGTTGCTGTATTATATATTTGTGGAGC 58.217 33.333 0.00 0.00 0.00 4.70
926 3936 9.930693 TGTTTACTTTGTTTGTGGTCTATTTTT 57.069 25.926 0.00 0.00 0.00 1.94
928 3938 9.744468 GATGTTTACTTTGTTTGTGGTCTATTT 57.256 29.630 0.00 0.00 0.00 1.40
929 3939 8.908903 TGATGTTTACTTTGTTTGTGGTCTATT 58.091 29.630 0.00 0.00 0.00 1.73
930 3940 8.458573 TGATGTTTACTTTGTTTGTGGTCTAT 57.541 30.769 0.00 0.00 0.00 1.98
931 3941 7.771361 TCTGATGTTTACTTTGTTTGTGGTCTA 59.229 33.333 0.00 0.00 0.00 2.59
932 3942 6.601613 TCTGATGTTTACTTTGTTTGTGGTCT 59.398 34.615 0.00 0.00 0.00 3.85
933 3943 6.791303 TCTGATGTTTACTTTGTTTGTGGTC 58.209 36.000 0.00 0.00 0.00 4.02
934 3944 6.767524 TCTGATGTTTACTTTGTTTGTGGT 57.232 33.333 0.00 0.00 0.00 4.16
935 3945 9.398170 CTAATCTGATGTTTACTTTGTTTGTGG 57.602 33.333 0.00 0.00 0.00 4.17
951 3961 6.128715 GCCGTTATGTCACATCTAATCTGATG 60.129 42.308 0.00 0.00 46.61 3.07
952 3962 5.928839 GCCGTTATGTCACATCTAATCTGAT 59.071 40.000 0.00 0.00 0.00 2.90
953 3963 5.289595 GCCGTTATGTCACATCTAATCTGA 58.710 41.667 0.00 0.00 0.00 3.27
954 3964 4.449068 GGCCGTTATGTCACATCTAATCTG 59.551 45.833 0.00 0.00 0.00 2.90
955 3965 4.100963 TGGCCGTTATGTCACATCTAATCT 59.899 41.667 0.00 0.00 0.00 2.40
956 3966 4.211374 GTGGCCGTTATGTCACATCTAATC 59.789 45.833 0.00 0.00 0.00 1.75
957 3967 4.127171 GTGGCCGTTATGTCACATCTAAT 58.873 43.478 0.00 0.00 0.00 1.73
958 3968 3.527533 GTGGCCGTTATGTCACATCTAA 58.472 45.455 0.00 0.00 0.00 2.10
959 3969 2.480587 CGTGGCCGTTATGTCACATCTA 60.481 50.000 0.00 0.00 0.00 1.98
960 3970 1.739035 CGTGGCCGTTATGTCACATCT 60.739 52.381 0.00 0.00 0.00 2.90
961 3971 0.650512 CGTGGCCGTTATGTCACATC 59.349 55.000 0.00 0.00 0.00 3.06
962 3972 0.742990 CCGTGGCCGTTATGTCACAT 60.743 55.000 0.00 0.00 0.00 3.21
963 3973 1.374885 CCGTGGCCGTTATGTCACA 60.375 57.895 0.00 0.00 0.00 3.58
964 3974 2.746803 GCCGTGGCCGTTATGTCAC 61.747 63.158 0.00 0.00 34.56 3.67
965 3975 2.435234 GCCGTGGCCGTTATGTCA 60.435 61.111 0.00 0.00 34.56 3.58
1058 4068 1.322538 GCCCATGCGAATGGTTCCTT 61.323 55.000 21.44 0.00 40.06 3.36
1059 4069 1.754234 GCCCATGCGAATGGTTCCT 60.754 57.895 21.44 0.00 40.06 3.36
1067 4077 4.161295 CGAGGAGGCCCATGCGAA 62.161 66.667 0.00 0.00 38.85 4.70
1383 4402 0.891373 ATCAGCGCTACACAGTCACT 59.109 50.000 10.99 0.00 0.00 3.41
1384 4403 1.272781 GATCAGCGCTACACAGTCAC 58.727 55.000 10.99 0.00 0.00 3.67
1385 4404 0.179163 CGATCAGCGCTACACAGTCA 60.179 55.000 10.99 0.00 0.00 3.41
1386 4405 0.098905 TCGATCAGCGCTACACAGTC 59.901 55.000 10.99 1.11 40.61 3.51
1387 4406 0.741326 ATCGATCAGCGCTACACAGT 59.259 50.000 10.99 0.00 40.61 3.55
1388 4407 1.520174 CAATCGATCAGCGCTACACAG 59.480 52.381 10.99 0.00 40.61 3.66
1389 4408 1.135112 ACAATCGATCAGCGCTACACA 60.135 47.619 10.99 0.00 40.61 3.72
1390 4409 1.256376 CACAATCGATCAGCGCTACAC 59.744 52.381 10.99 2.92 40.61 2.90
1406 4427 3.431912 CGATCCAACAGAAACGATCACAA 59.568 43.478 0.00 0.00 32.38 3.33
1415 4436 1.368641 CATCGCCGATCCAACAGAAA 58.631 50.000 0.00 0.00 0.00 2.52
1447 4533 1.336795 GGTCCATGTTTTTCTTGCCCG 60.337 52.381 0.00 0.00 0.00 6.13
1472 4558 1.020437 GGAACAAGCCATGCTAGAGC 58.980 55.000 0.00 0.00 38.25 4.09
1473 4559 2.559440 GAGGAACAAGCCATGCTAGAG 58.441 52.381 0.00 0.00 38.25 2.43
1474 4560 1.134699 CGAGGAACAAGCCATGCTAGA 60.135 52.381 0.00 0.00 38.25 2.43
1475 4561 1.134699 TCGAGGAACAAGCCATGCTAG 60.135 52.381 0.00 0.00 38.25 3.42
1498 4618 2.102578 TCTGATTCTGTGGATGCTCGA 58.897 47.619 0.00 0.00 0.00 4.04
1552 4679 4.734398 TCAGGTCAAACTGCAAATTTGT 57.266 36.364 19.03 0.00 38.08 2.83
1553 4680 6.607735 ATTTCAGGTCAAACTGCAAATTTG 57.392 33.333 14.03 14.03 38.36 2.32
1562 4689 3.767711 GAGGGGAATTTCAGGTCAAACT 58.232 45.455 0.00 0.00 0.00 2.66
1567 4694 2.491675 AACGAGGGGAATTTCAGGTC 57.508 50.000 0.00 0.00 0.00 3.85
1626 4753 4.814294 CACCCTCGGCGTGCTACC 62.814 72.222 6.85 0.00 0.00 3.18
1730 4857 1.300388 GCACCAGTCGTACACGGTT 60.300 57.895 1.39 0.00 40.29 4.44
1793 4920 4.687901 TGTGTATGGGATCATCATTCGT 57.312 40.909 6.18 0.00 34.96 3.85
1794 4921 6.375945 TTTTGTGTATGGGATCATCATTCG 57.624 37.500 6.18 0.00 34.96 3.34
1815 4942 2.108952 AGCATGGGGTGAGAGAGTTTTT 59.891 45.455 0.00 0.00 0.00 1.94
1816 4943 1.707427 AGCATGGGGTGAGAGAGTTTT 59.293 47.619 0.00 0.00 0.00 2.43
1817 4944 1.004044 CAGCATGGGGTGAGAGAGTTT 59.996 52.381 0.00 0.00 45.29 2.66
1818 4945 0.617413 CAGCATGGGGTGAGAGAGTT 59.383 55.000 0.00 0.00 45.29 3.01
1819 4946 1.908340 GCAGCATGGGGTGAGAGAGT 61.908 60.000 0.00 0.00 45.29 3.24
1820 4947 1.153208 GCAGCATGGGGTGAGAGAG 60.153 63.158 0.00 0.00 45.29 3.20
1821 4948 1.203441 AAGCAGCATGGGGTGAGAGA 61.203 55.000 0.00 0.00 45.29 3.10
1822 4949 1.030488 CAAGCAGCATGGGGTGAGAG 61.030 60.000 0.00 0.00 45.29 3.20
1823 4950 1.001764 CAAGCAGCATGGGGTGAGA 60.002 57.895 0.00 0.00 45.29 3.27
1824 4951 2.707849 GCAAGCAGCATGGGGTGAG 61.708 63.158 0.00 0.00 45.29 3.51
1825 4952 2.677524 GCAAGCAGCATGGGGTGA 60.678 61.111 0.00 0.00 45.29 4.02
1837 4964 2.613595 TCATCATTCGTATGGTGCAAGC 59.386 45.455 10.19 0.00 41.72 4.01
1838 4965 4.779987 CATCATCATTCGTATGGTGCAAG 58.220 43.478 10.19 0.00 41.72 4.01
1839 4966 4.816786 CATCATCATTCGTATGGTGCAA 57.183 40.909 10.19 0.00 41.72 4.08
1842 4969 5.409214 TGTATGCATCATCATTCGTATGGTG 59.591 40.000 0.19 8.86 43.04 4.17
1860 4987 5.406175 TGACGTAGGTAGTTTTTGTGTATGC 59.594 40.000 0.00 0.00 0.00 3.14
1897 5038 9.708222 CCATATGTTCTTTATCTTCTTTCAACG 57.292 33.333 1.24 0.00 0.00 4.10
1971 5373 4.954970 ACCACCCTGCAAGCACGG 62.955 66.667 8.28 8.28 0.00 4.94
2053 5763 3.541713 CGCCAGCTACCTCCTCCC 61.542 72.222 0.00 0.00 0.00 4.30
2054 5764 2.760385 ACGCCAGCTACCTCCTCC 60.760 66.667 0.00 0.00 0.00 4.30
2103 5814 7.436970 CACAACGATTACACAATAGCAGGTATA 59.563 37.037 0.00 0.00 0.00 1.47
2158 5874 0.441145 GGGCGCACAACTACGTAAAG 59.559 55.000 10.83 0.00 0.00 1.85
2186 5902 2.446435 ACCACATCACATACTTTGGCC 58.554 47.619 0.00 0.00 0.00 5.36
2209 5925 3.118000 TCTTGATCGGAGCCTACTACTGA 60.118 47.826 0.00 0.00 0.00 3.41
2220 5944 3.732212 TGGCAATACATCTTGATCGGAG 58.268 45.455 0.00 0.00 0.00 4.63
2248 5972 4.993028 TCCATATAAAATAAAGGGCGCCT 58.007 39.130 28.56 9.55 33.87 5.52
2255 5983 9.155975 CGGTCATCTCCTCCATATAAAATAAAG 57.844 37.037 0.00 0.00 0.00 1.85
2259 5987 6.688073 ACGGTCATCTCCTCCATATAAAAT 57.312 37.500 0.00 0.00 0.00 1.82
2260 5988 6.099125 TCAACGGTCATCTCCTCCATATAAAA 59.901 38.462 0.00 0.00 0.00 1.52
2262 5990 5.144832 TCAACGGTCATCTCCTCCATATAA 58.855 41.667 0.00 0.00 0.00 0.98
2264 5992 3.576861 TCAACGGTCATCTCCTCCATAT 58.423 45.455 0.00 0.00 0.00 1.78
2266 5994 1.866015 TCAACGGTCATCTCCTCCAT 58.134 50.000 0.00 0.00 0.00 3.41
2279 6013 0.390860 TTGCAACCCCATTTCAACGG 59.609 50.000 0.00 0.00 0.00 4.44
2282 6016 1.419012 TGCATTGCAACCCCATTTCAA 59.581 42.857 9.33 0.00 34.76 2.69
2290 6024 1.501169 GAACACTTGCATTGCAACCC 58.499 50.000 19.77 4.38 43.99 4.11
2293 6027 2.292845 TGATCGAACACTTGCATTGCAA 59.707 40.909 21.97 21.97 46.80 4.08
2316 6050 8.272173 TGGACAATTATAGTAGGAAAAGGAAGG 58.728 37.037 0.00 0.00 0.00 3.46
2347 6081 9.554395 CCATACATACATGGTACTCAATTACAA 57.446 33.333 0.00 0.00 40.62 2.41
2370 6104 7.038373 AGGGTTATTTGTTGCATTTAACTCCAT 60.038 33.333 0.00 0.00 0.00 3.41
2391 6125 2.003937 ACGGTGGCAAAATTAGGGTT 57.996 45.000 0.00 0.00 0.00 4.11
2399 6133 4.079970 TGGTATGATTTACGGTGGCAAAA 58.920 39.130 0.00 0.00 0.00 2.44
2401 6135 3.351794 TGGTATGATTTACGGTGGCAA 57.648 42.857 0.00 0.00 0.00 4.52
2404 6138 4.079980 TGGATGGTATGATTTACGGTGG 57.920 45.455 0.00 0.00 0.00 4.61
2421 6155 6.276568 AGCTAAGGGGATCTATTTCATTGGAT 59.723 38.462 0.00 0.00 0.00 3.41
2432 6166 4.232091 CCTTAACCAGCTAAGGGGATCTA 58.768 47.826 5.23 0.00 42.95 1.98
2458 6194 9.877178 CAGTCACCTATAAGTTCTAAAAGACAT 57.123 33.333 0.00 0.00 0.00 3.06
2459 6195 7.817962 GCAGTCACCTATAAGTTCTAAAAGACA 59.182 37.037 0.00 0.00 0.00 3.41
2467 6203 5.499004 TTTGGCAGTCACCTATAAGTTCT 57.501 39.130 0.00 0.00 0.00 3.01
2476 6212 3.256631 CAGCTTATTTTTGGCAGTCACCT 59.743 43.478 0.00 0.00 0.00 4.00
2498 6234 0.972883 CCATGAGCTAGGTAGAGGGC 59.027 60.000 0.00 0.00 0.00 5.19
2513 6249 1.544724 ATTTTGTCCGGTCACCCATG 58.455 50.000 0.00 0.00 0.00 3.66
2547 6283 7.668469 AGGAGGAATTAACCGTATTGTCTTTTT 59.332 33.333 0.00 0.00 34.73 1.94
2564 6300 7.898014 AAAAATATTTCGGCTAGGAGGAATT 57.102 32.000 0.10 0.00 0.00 2.17
2665 6422 8.134202 TCATAAAAGTAGAGAGAATGGTCACA 57.866 34.615 0.00 0.00 0.00 3.58
2666 6423 9.606631 ATTCATAAAAGTAGAGAGAATGGTCAC 57.393 33.333 0.00 0.00 0.00 3.67
2753 6512 7.618019 AGCTTTCCTCTTTTTATTTTTCCCT 57.382 32.000 0.00 0.00 0.00 4.20
2838 6598 4.347000 TCCCGGATTTATTTCCTGAGTAGG 59.653 45.833 0.73 0.00 46.06 3.18
2845 6605 5.187621 TGTTCTTCCCGGATTTATTTCCT 57.812 39.130 0.73 0.00 33.30 3.36
2855 6615 4.975631 TCACTAAAATTGTTCTTCCCGGA 58.024 39.130 0.73 0.00 0.00 5.14
2866 6626 2.230266 CCCCACCGGTTCACTAAAATTG 59.770 50.000 2.97 0.00 0.00 2.32
2871 6631 0.763604 TCACCCCACCGGTTCACTAA 60.764 55.000 2.97 0.00 45.36 2.24
2880 6640 2.159819 CTCACAGTCTCACCCCACCG 62.160 65.000 0.00 0.00 0.00 4.94
2888 6648 4.923415 TCTTACATCCTCTCACAGTCTCA 58.077 43.478 0.00 0.00 0.00 3.27
2894 6654 5.306937 TCCAGTTTTCTTACATCCTCTCACA 59.693 40.000 0.00 0.00 0.00 3.58
2895 6655 5.794894 TCCAGTTTTCTTACATCCTCTCAC 58.205 41.667 0.00 0.00 0.00 3.51
2901 6661 6.768381 CCTATTCCTCCAGTTTTCTTACATCC 59.232 42.308 0.00 0.00 0.00 3.51
2903 6663 7.272144 ACCTATTCCTCCAGTTTTCTTACAT 57.728 36.000 0.00 0.00 0.00 2.29
2906 6666 5.718130 TCGACCTATTCCTCCAGTTTTCTTA 59.282 40.000 0.00 0.00 0.00 2.10
2909 6669 4.182339 GTCGACCTATTCCTCCAGTTTTC 58.818 47.826 3.51 0.00 0.00 2.29
2910 6670 3.055312 GGTCGACCTATTCCTCCAGTTTT 60.055 47.826 27.64 0.00 0.00 2.43
2916 6676 1.718280 ATGGGTCGACCTATTCCTCC 58.282 55.000 32.52 14.74 41.11 4.30
2939 6699 1.560505 ATCACACATCCTTTTGGCCC 58.439 50.000 0.00 0.00 40.12 5.80
2942 6702 4.455533 TCGAGAAATCACACATCCTTTTGG 59.544 41.667 0.00 0.00 42.21 3.28
2944 6704 5.063204 TGTCGAGAAATCACACATCCTTTT 58.937 37.500 0.00 0.00 0.00 2.27
2985 6745 5.067936 TGCGACTAAATGTCCCTTTCAAAAA 59.932 36.000 0.00 0.00 42.49 1.94
2986 6746 4.580995 TGCGACTAAATGTCCCTTTCAAAA 59.419 37.500 0.00 0.00 42.49 2.44
2987 6747 4.138290 TGCGACTAAATGTCCCTTTCAAA 58.862 39.130 0.00 0.00 42.49 2.69
2988 6748 3.745799 TGCGACTAAATGTCCCTTTCAA 58.254 40.909 0.00 0.00 42.49 2.69
2989 6749 3.410631 TGCGACTAAATGTCCCTTTCA 57.589 42.857 0.00 0.00 42.49 2.69
2990 6750 3.751698 ACTTGCGACTAAATGTCCCTTTC 59.248 43.478 0.00 0.00 42.49 2.62
2991 6751 3.751518 ACTTGCGACTAAATGTCCCTTT 58.248 40.909 0.00 0.00 42.49 3.11
2992 6752 3.418684 ACTTGCGACTAAATGTCCCTT 57.581 42.857 0.00 0.00 42.49 3.95
2993 6753 3.074412 CAACTTGCGACTAAATGTCCCT 58.926 45.455 0.00 0.00 42.49 4.20
2994 6754 2.161609 CCAACTTGCGACTAAATGTCCC 59.838 50.000 0.00 0.00 42.49 4.46
2995 6755 2.812011 ACCAACTTGCGACTAAATGTCC 59.188 45.455 0.00 0.00 42.49 4.02
2996 6756 4.689345 AGTACCAACTTGCGACTAAATGTC 59.311 41.667 0.00 0.00 35.94 3.06
2997 6757 4.638304 AGTACCAACTTGCGACTAAATGT 58.362 39.130 0.00 0.00 29.00 2.71
2998 6758 5.390567 GGAAGTACCAACTTGCGACTAAATG 60.391 44.000 0.00 0.00 46.09 2.32
2999 6759 4.694037 GGAAGTACCAACTTGCGACTAAAT 59.306 41.667 0.00 0.00 46.09 1.40
3000 6760 4.060205 GGAAGTACCAACTTGCGACTAAA 58.940 43.478 0.00 0.00 46.09 1.85
3001 6761 3.656559 GGAAGTACCAACTTGCGACTAA 58.343 45.455 0.00 0.00 46.09 2.24
3002 6762 3.308438 GGAAGTACCAACTTGCGACTA 57.692 47.619 0.00 0.00 46.09 2.59
3003 6763 2.165319 GGAAGTACCAACTTGCGACT 57.835 50.000 0.00 0.00 46.09 4.18
3008 6768 7.046033 ACCGAATAATAGGAAGTACCAACTTG 58.954 38.462 0.00 0.00 46.09 3.16
3010 6770 6.803366 ACCGAATAATAGGAAGTACCAACT 57.197 37.500 0.00 0.00 42.04 3.16
3013 6773 8.526147 GCTATAACCGAATAATAGGAAGTACCA 58.474 37.037 0.00 0.00 42.04 3.25
3014 6774 7.699812 CGCTATAACCGAATAATAGGAAGTACC 59.300 40.741 0.00 0.00 39.35 3.34
3015 6775 8.454106 TCGCTATAACCGAATAATAGGAAGTAC 58.546 37.037 0.00 0.00 0.00 2.73
3016 6776 8.565896 TCGCTATAACCGAATAATAGGAAGTA 57.434 34.615 0.00 0.00 0.00 2.24
3017 6777 7.458409 TCGCTATAACCGAATAATAGGAAGT 57.542 36.000 0.00 0.00 0.00 3.01
3028 6788 7.502120 ACTACTCTTATTCGCTATAACCGAA 57.498 36.000 9.47 9.47 46.98 4.30
3029 6789 8.783833 ATACTACTCTTATTCGCTATAACCGA 57.216 34.615 0.00 0.00 0.00 4.69
3030 6790 9.837525 AAATACTACTCTTATTCGCTATAACCG 57.162 33.333 0.00 0.00 0.00 4.44
3043 6803 9.090692 GCGGTTTGTATGAAAATACTACTCTTA 57.909 33.333 0.00 0.00 0.00 2.10
3044 6804 7.604927 TGCGGTTTGTATGAAAATACTACTCTT 59.395 33.333 0.00 0.00 0.00 2.85
3045 6805 7.064253 GTGCGGTTTGTATGAAAATACTACTCT 59.936 37.037 0.00 0.00 0.00 3.24
3046 6806 7.064253 AGTGCGGTTTGTATGAAAATACTACTC 59.936 37.037 0.00 0.00 0.00 2.59
3047 6807 6.877322 AGTGCGGTTTGTATGAAAATACTACT 59.123 34.615 0.00 0.00 0.00 2.57
3048 6808 7.068692 AGTGCGGTTTGTATGAAAATACTAC 57.931 36.000 0.00 0.00 0.00 2.73
3049 6809 6.314400 GGAGTGCGGTTTGTATGAAAATACTA 59.686 38.462 0.00 0.00 0.00 1.82
3050 6810 5.123344 GGAGTGCGGTTTGTATGAAAATACT 59.877 40.000 0.00 0.00 0.00 2.12
3051 6811 5.123344 AGGAGTGCGGTTTGTATGAAAATAC 59.877 40.000 0.00 0.00 0.00 1.89
3052 6812 5.250200 AGGAGTGCGGTTTGTATGAAAATA 58.750 37.500 0.00 0.00 0.00 1.40
3053 6813 4.079253 AGGAGTGCGGTTTGTATGAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
3054 6814 3.482436 AGGAGTGCGGTTTGTATGAAAA 58.518 40.909 0.00 0.00 0.00 2.29
3055 6815 3.134574 AGGAGTGCGGTTTGTATGAAA 57.865 42.857 0.00 0.00 0.00 2.69
3056 6816 2.811431 CAAGGAGTGCGGTTTGTATGAA 59.189 45.455 0.00 0.00 0.00 2.57
3057 6817 2.037902 TCAAGGAGTGCGGTTTGTATGA 59.962 45.455 0.00 0.00 0.00 2.15
3058 6818 2.422597 TCAAGGAGTGCGGTTTGTATG 58.577 47.619 0.00 0.00 0.00 2.39
3059 6819 2.851263 TCAAGGAGTGCGGTTTGTAT 57.149 45.000 0.00 0.00 0.00 2.29
3060 6820 2.851263 ATCAAGGAGTGCGGTTTGTA 57.149 45.000 0.00 0.00 0.00 2.41
3061 6821 2.851263 TATCAAGGAGTGCGGTTTGT 57.149 45.000 0.00 0.00 0.00 2.83
3062 6822 2.614057 GGATATCAAGGAGTGCGGTTTG 59.386 50.000 4.83 0.00 0.00 2.93
3063 6823 2.505819 AGGATATCAAGGAGTGCGGTTT 59.494 45.455 4.83 0.00 0.00 3.27
3064 6824 2.119495 AGGATATCAAGGAGTGCGGTT 58.881 47.619 4.83 0.00 0.00 4.44
3065 6825 1.794714 AGGATATCAAGGAGTGCGGT 58.205 50.000 4.83 0.00 0.00 5.68
3066 6826 3.368843 CCATAGGATATCAAGGAGTGCGG 60.369 52.174 4.83 0.00 0.00 5.69
3067 6827 3.368843 CCCATAGGATATCAAGGAGTGCG 60.369 52.174 4.83 0.00 33.47 5.34
3068 6828 3.620966 GCCCATAGGATATCAAGGAGTGC 60.621 52.174 4.83 0.00 33.47 4.40
3069 6829 3.368843 CGCCCATAGGATATCAAGGAGTG 60.369 52.174 4.83 0.00 33.47 3.51
3070 6830 2.834549 CGCCCATAGGATATCAAGGAGT 59.165 50.000 4.83 0.00 33.47 3.85
3071 6831 2.834549 ACGCCCATAGGATATCAAGGAG 59.165 50.000 4.83 2.06 33.47 3.69
3072 6832 2.902608 ACGCCCATAGGATATCAAGGA 58.097 47.619 4.83 0.00 33.47 3.36
3073 6833 3.338249 CAACGCCCATAGGATATCAAGG 58.662 50.000 4.83 0.38 33.47 3.61
3074 6834 3.338249 CCAACGCCCATAGGATATCAAG 58.662 50.000 4.83 0.00 33.47 3.02
3075 6835 2.552155 GCCAACGCCCATAGGATATCAA 60.552 50.000 4.83 0.00 33.47 2.57
3076 6836 1.003118 GCCAACGCCCATAGGATATCA 59.997 52.381 4.83 0.00 33.47 2.15
3077 6837 1.739067 GCCAACGCCCATAGGATATC 58.261 55.000 0.00 0.00 33.47 1.63
3078 6838 3.957288 GCCAACGCCCATAGGATAT 57.043 52.632 0.00 0.00 33.47 1.63
3096 6856 0.611896 ACGAAGGGAAGCCAATTGGG 60.612 55.000 25.73 8.21 40.85 4.12
3097 6857 1.256812 AACGAAGGGAAGCCAATTGG 58.743 50.000 20.81 20.81 38.53 3.16
3098 6858 3.673323 GCTAAACGAAGGGAAGCCAATTG 60.673 47.826 0.00 0.00 0.00 2.32
3099 6859 2.492088 GCTAAACGAAGGGAAGCCAATT 59.508 45.455 0.00 0.00 0.00 2.32
3100 6860 2.092323 GCTAAACGAAGGGAAGCCAAT 58.908 47.619 0.00 0.00 0.00 3.16
3101 6861 1.202830 TGCTAAACGAAGGGAAGCCAA 60.203 47.619 0.00 0.00 32.14 4.52
3102 6862 0.398696 TGCTAAACGAAGGGAAGCCA 59.601 50.000 0.00 0.00 32.14 4.75
3103 6863 1.751437 ATGCTAAACGAAGGGAAGCC 58.249 50.000 0.00 0.00 32.14 4.35
3104 6864 3.850122 AAATGCTAAACGAAGGGAAGC 57.150 42.857 0.00 0.00 0.00 3.86
3105 6865 4.394920 TGCTAAATGCTAAACGAAGGGAAG 59.605 41.667 0.00 0.00 43.37 3.46
3106 6866 4.328536 TGCTAAATGCTAAACGAAGGGAA 58.671 39.130 0.00 0.00 43.37 3.97
3107 6867 3.938963 CTGCTAAATGCTAAACGAAGGGA 59.061 43.478 0.00 0.00 43.37 4.20
3108 6868 3.689649 ACTGCTAAATGCTAAACGAAGGG 59.310 43.478 0.00 0.00 43.37 3.95
3109 6869 4.946784 ACTGCTAAATGCTAAACGAAGG 57.053 40.909 0.00 0.00 43.37 3.46
3110 6870 7.078228 AGAAAACTGCTAAATGCTAAACGAAG 58.922 34.615 0.00 0.00 43.37 3.79
3111 6871 6.966021 AGAAAACTGCTAAATGCTAAACGAA 58.034 32.000 0.00 0.00 43.37 3.85
3112 6872 6.554334 AGAAAACTGCTAAATGCTAAACGA 57.446 33.333 0.00 0.00 43.37 3.85
3113 6873 7.591426 AGAAAGAAAACTGCTAAATGCTAAACG 59.409 33.333 0.00 0.00 43.37 3.60
3114 6874 8.803201 AGAAAGAAAACTGCTAAATGCTAAAC 57.197 30.769 0.00 0.00 43.37 2.01
3118 6878 9.018582 AGAATAGAAAGAAAACTGCTAAATGCT 57.981 29.630 0.00 0.00 43.37 3.79
3119 6879 9.070149 CAGAATAGAAAGAAAACTGCTAAATGC 57.930 33.333 0.00 0.00 43.25 3.56
3122 6882 9.950680 CAACAGAATAGAAAGAAAACTGCTAAA 57.049 29.630 0.00 0.00 0.00 1.85
3123 6883 8.076178 GCAACAGAATAGAAAGAAAACTGCTAA 58.924 33.333 0.00 0.00 0.00 3.09
3124 6884 7.228507 TGCAACAGAATAGAAAGAAAACTGCTA 59.771 33.333 0.00 0.00 0.00 3.49
3125 6885 6.039717 TGCAACAGAATAGAAAGAAAACTGCT 59.960 34.615 0.00 0.00 0.00 4.24
3126 6886 6.208644 TGCAACAGAATAGAAAGAAAACTGC 58.791 36.000 0.00 0.00 0.00 4.40
3127 6887 8.807667 ATTGCAACAGAATAGAAAGAAAACTG 57.192 30.769 0.00 0.00 0.00 3.16
3128 6888 9.822185 AAATTGCAACAGAATAGAAAGAAAACT 57.178 25.926 0.00 0.00 0.00 2.66
3133 6893 9.683069 GAAGAAAATTGCAACAGAATAGAAAGA 57.317 29.630 0.00 0.00 0.00 2.52
3134 6894 9.467258 TGAAGAAAATTGCAACAGAATAGAAAG 57.533 29.630 0.00 0.00 0.00 2.62
3135 6895 9.467258 CTGAAGAAAATTGCAACAGAATAGAAA 57.533 29.630 0.00 0.00 0.00 2.52
3136 6896 8.084073 CCTGAAGAAAATTGCAACAGAATAGAA 58.916 33.333 0.00 0.00 0.00 2.10
3137 6897 7.448161 TCCTGAAGAAAATTGCAACAGAATAGA 59.552 33.333 0.00 0.00 0.00 1.98
3138 6898 7.540055 GTCCTGAAGAAAATTGCAACAGAATAG 59.460 37.037 0.00 0.00 0.00 1.73
3139 6899 7.014134 TGTCCTGAAGAAAATTGCAACAGAATA 59.986 33.333 0.00 0.00 0.00 1.75
3140 6900 6.183360 TGTCCTGAAGAAAATTGCAACAGAAT 60.183 34.615 0.00 0.00 0.00 2.40
3141 6901 5.126869 TGTCCTGAAGAAAATTGCAACAGAA 59.873 36.000 0.00 0.00 0.00 3.02
3142 6902 4.644234 TGTCCTGAAGAAAATTGCAACAGA 59.356 37.500 0.00 0.00 0.00 3.41
3143 6903 4.741676 GTGTCCTGAAGAAAATTGCAACAG 59.258 41.667 0.00 2.34 0.00 3.16
3144 6904 4.681744 GTGTCCTGAAGAAAATTGCAACA 58.318 39.130 0.00 0.00 0.00 3.33
3145 6905 3.730715 CGTGTCCTGAAGAAAATTGCAAC 59.269 43.478 0.00 0.00 0.00 4.17
3146 6906 3.380004 ACGTGTCCTGAAGAAAATTGCAA 59.620 39.130 0.00 0.00 0.00 4.08
3147 6907 2.948979 ACGTGTCCTGAAGAAAATTGCA 59.051 40.909 0.00 0.00 0.00 4.08
3148 6908 3.626028 ACGTGTCCTGAAGAAAATTGC 57.374 42.857 0.00 0.00 0.00 3.56
3149 6909 7.119262 AGGTATAACGTGTCCTGAAGAAAATTG 59.881 37.037 0.00 0.00 0.00 2.32
3150 6910 7.166167 AGGTATAACGTGTCCTGAAGAAAATT 58.834 34.615 0.00 0.00 0.00 1.82
3151 6911 6.708285 AGGTATAACGTGTCCTGAAGAAAAT 58.292 36.000 0.00 0.00 0.00 1.82
3152 6912 6.105397 AGGTATAACGTGTCCTGAAGAAAA 57.895 37.500 0.00 0.00 0.00 2.29
3153 6913 5.733620 AGGTATAACGTGTCCTGAAGAAA 57.266 39.130 0.00 0.00 0.00 2.52
3154 6914 7.414222 AATAGGTATAACGTGTCCTGAAGAA 57.586 36.000 10.09 0.00 0.00 2.52
3155 6915 7.776969 ACTAATAGGTATAACGTGTCCTGAAGA 59.223 37.037 10.09 0.00 0.00 2.87
3156 6916 7.938715 ACTAATAGGTATAACGTGTCCTGAAG 58.061 38.462 10.09 7.63 0.00 3.02
3157 6917 7.886629 ACTAATAGGTATAACGTGTCCTGAA 57.113 36.000 10.09 0.00 0.00 3.02
3158 6918 7.886629 AACTAATAGGTATAACGTGTCCTGA 57.113 36.000 10.09 0.00 0.00 3.86
3159 6919 7.377928 CGAAACTAATAGGTATAACGTGTCCTG 59.622 40.741 10.09 0.00 0.00 3.86
3160 6920 7.283127 TCGAAACTAATAGGTATAACGTGTCCT 59.717 37.037 0.00 0.00 0.00 3.85
3161 6921 7.377131 GTCGAAACTAATAGGTATAACGTGTCC 59.623 40.741 0.00 0.00 0.00 4.02
3162 6922 7.377131 GGTCGAAACTAATAGGTATAACGTGTC 59.623 40.741 0.00 0.00 0.00 3.67
3163 6923 7.067494 AGGTCGAAACTAATAGGTATAACGTGT 59.933 37.037 0.00 0.00 0.00 4.49
3164 6924 7.377928 CAGGTCGAAACTAATAGGTATAACGTG 59.622 40.741 0.00 0.00 0.00 4.49
3165 6925 7.067494 ACAGGTCGAAACTAATAGGTATAACGT 59.933 37.037 0.00 0.00 0.00 3.99
3166 6926 7.420800 ACAGGTCGAAACTAATAGGTATAACG 58.579 38.462 0.00 0.00 0.00 3.18
3167 6927 8.794308 GACAGGTCGAAACTAATAGGTATAAC 57.206 38.462 0.00 0.00 0.00 1.89
3187 6947 3.670625 TGGAAGTAAAATGACCGACAGG 58.329 45.455 0.00 0.00 45.13 4.00
3188 6948 5.880054 ATTGGAAGTAAAATGACCGACAG 57.120 39.130 0.00 0.00 0.00 3.51
3189 6949 7.747155 TTTATTGGAAGTAAAATGACCGACA 57.253 32.000 0.00 0.00 0.00 4.35
3190 6950 9.931210 CTATTTATTGGAAGTAAAATGACCGAC 57.069 33.333 0.00 0.00 0.00 4.79
3191 6951 9.675464 ACTATTTATTGGAAGTAAAATGACCGA 57.325 29.630 0.00 0.00 0.00 4.69
3237 6997 9.705290 GTGAAGCCTCAATAAAAGGAAATAAAA 57.295 29.630 0.00 0.00 35.83 1.52
3238 6998 8.865090 TGTGAAGCCTCAATAAAAGGAAATAAA 58.135 29.630 0.00 0.00 35.83 1.40
3239 6999 8.415950 TGTGAAGCCTCAATAAAAGGAAATAA 57.584 30.769 0.00 0.00 35.83 1.40
3240 7000 8.303876 GTTGTGAAGCCTCAATAAAAGGAAATA 58.696 33.333 0.00 0.00 35.83 1.40
3241 7001 6.916360 TGTGAAGCCTCAATAAAAGGAAAT 57.084 33.333 0.00 0.00 35.83 2.17
3242 7002 6.097554 TGTTGTGAAGCCTCAATAAAAGGAAA 59.902 34.615 0.00 0.00 35.83 3.13
3243 7003 5.596361 TGTTGTGAAGCCTCAATAAAAGGAA 59.404 36.000 0.00 0.00 35.83 3.36
3244 7004 5.136828 TGTTGTGAAGCCTCAATAAAAGGA 58.863 37.500 0.00 0.00 35.83 3.36
3245 7005 5.452078 TGTTGTGAAGCCTCAATAAAAGG 57.548 39.130 0.00 0.00 36.95 3.11
3246 7006 6.449698 ACATGTTGTGAAGCCTCAATAAAAG 58.550 36.000 0.00 0.00 31.88 2.27
3247 7007 6.403866 ACATGTTGTGAAGCCTCAATAAAA 57.596 33.333 0.00 0.00 31.88 1.52
3248 7008 6.403866 AACATGTTGTGAAGCCTCAATAAA 57.596 33.333 11.07 0.00 31.88 1.40
3249 7009 6.403866 AAACATGTTGTGAAGCCTCAATAA 57.596 33.333 12.82 0.00 31.88 1.40
3250 7010 6.403866 AAAACATGTTGTGAAGCCTCAATA 57.596 33.333 12.82 0.00 31.88 1.90
3251 7011 4.942761 AAACATGTTGTGAAGCCTCAAT 57.057 36.364 12.82 0.00 31.88 2.57
3252 7012 4.734398 AAAACATGTTGTGAAGCCTCAA 57.266 36.364 12.82 0.00 31.88 3.02
3253 7013 4.734398 AAAAACATGTTGTGAAGCCTCA 57.266 36.364 12.82 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.