Multiple sequence alignment - TraesCS7A01G087500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G087500 chr7A 100.000 2845 0 0 1 2845 52277901 52280745 0.000000e+00 5254.0
1 TraesCS7A01G087500 chr7A 83.333 504 57 16 1675 2167 50369771 50369284 9.360000e-120 440.0
2 TraesCS7A01G087500 chr7A 88.172 372 36 2 999 1364 52386913 52387282 1.210000e-118 436.0
3 TraesCS7A01G087500 chr7A 87.915 331 38 2 1364 1693 52387326 52387655 3.440000e-104 388.0
4 TraesCS7A01G087500 chr7A 96.903 226 6 1 2181 2406 14622915 14622691 7.440000e-101 377.0
5 TraesCS7A01G087500 chr7A 84.409 372 45 7 999 1358 50389143 50388773 1.250000e-93 353.0
6 TraesCS7A01G087500 chr7A 78.853 558 66 31 1649 2187 52387665 52388189 2.110000e-86 329.0
7 TraesCS7A01G087500 chr7A 90.761 184 16 1 1498 1680 50388520 50388337 7.870000e-61 244.0
8 TraesCS7A01G087500 chr7A 92.982 57 4 0 2789 2845 701189966 701190022 1.820000e-12 84.2
9 TraesCS7A01G087500 chr7A 90.164 61 5 1 2115 2174 51077825 51077885 8.450000e-11 78.7
10 TraesCS7A01G087500 chr7A 90.164 61 5 1 2115 2174 51124474 51124534 8.450000e-11 78.7
11 TraesCS7A01G087500 chr7D 89.792 1783 96 22 1 1742 49380162 49381899 0.000000e+00 2206.0
12 TraesCS7A01G087500 chr7D 92.810 459 15 6 1741 2189 49381981 49382431 0.000000e+00 649.0
13 TraesCS7A01G087500 chr7D 84.311 682 80 16 1498 2167 47763350 47762684 2.390000e-180 641.0
14 TraesCS7A01G087500 chr7D 92.576 458 17 5 2402 2845 49382427 49382881 2.390000e-180 641.0
15 TraesCS7A01G087500 chr7D 89.673 397 32 2 1368 1755 49635923 49636319 5.470000e-137 497.0
16 TraesCS7A01G087500 chr7D 78.631 482 59 27 1715 2174 48347667 48348126 2.160000e-71 279.0
17 TraesCS7A01G087500 chr7D 81.595 326 37 10 2404 2714 49636890 49637207 6.090000e-62 248.0
18 TraesCS7A01G087500 chr7D 78.109 402 40 26 1781 2169 49636515 49636881 7.990000e-51 211.0
19 TraesCS7A01G087500 chr4A 90.766 888 66 8 473 1351 663985608 663986488 0.000000e+00 1171.0
20 TraesCS7A01G087500 chr4A 91.274 848 33 11 1364 2189 663986566 663987394 0.000000e+00 1118.0
21 TraesCS7A01G087500 chr4A 88.043 368 40 2 999 1364 664153150 664153515 1.570000e-117 433.0
22 TraesCS7A01G087500 chr4A 84.967 306 42 2 127 431 663985317 663985619 9.900000e-80 307.0
23 TraesCS7A01G087500 chr4A 80.378 423 47 15 1364 1785 664153554 664153941 3.590000e-74 289.0
24 TraesCS7A01G087500 chr4A 78.961 385 46 20 1823 2190 664154280 664154646 2.200000e-56 230.0
25 TraesCS7A01G087500 chr4A 77.174 368 58 16 2402 2751 664154641 664155000 1.040000e-44 191.0
26 TraesCS7A01G087500 chr3A 97.788 226 5 0 2181 2406 224325185 224325410 9.560000e-105 390.0
27 TraesCS7A01G087500 chr3A 96.507 229 7 1 2184 2411 149722518 149722746 7.440000e-101 377.0
28 TraesCS7A01G087500 chr2D 97.758 223 5 0 2183 2405 638883788 638884010 4.450000e-103 385.0
29 TraesCS7A01G087500 chr2D 76.400 250 52 6 126 372 348287803 348287558 8.270000e-26 128.0
30 TraesCS7A01G087500 chr3B 96.930 228 7 0 2183 2410 69370242 69370469 1.600000e-102 383.0
31 TraesCS7A01G087500 chr3B 97.309 223 6 0 2183 2405 700793749 700793971 2.070000e-101 379.0
32 TraesCS7A01G087500 chr5A 96.916 227 6 1 2186 2411 549405584 549405810 2.070000e-101 379.0
33 TraesCS7A01G087500 chr5A 87.402 127 14 2 1000 1126 426903901 426904025 8.210000e-31 145.0
34 TraesCS7A01G087500 chr5A 90.123 81 6 1 1 81 593498724 593498802 1.390000e-18 104.0
35 TraesCS7A01G087500 chr5A 82.000 100 18 0 181 280 74467564 74467663 5.050000e-13 86.1
36 TraesCS7A01G087500 chr1A 97.309 223 6 0 2182 2404 97821356 97821578 2.070000e-101 379.0
37 TraesCS7A01G087500 chr4B 96.491 228 8 0 2182 2409 626017108 626017335 7.440000e-101 377.0
38 TraesCS7A01G087500 chr4B 88.889 81 7 2 1 81 117065277 117065355 6.490000e-17 99.0
39 TraesCS7A01G087500 chr4B 88.889 81 7 2 1 81 117086113 117086191 6.490000e-17 99.0
40 TraesCS7A01G087500 chr5D 88.496 113 13 0 1000 1112 329796631 329796519 1.370000e-28 137.0
41 TraesCS7A01G087500 chr5B 84.496 129 17 3 1000 1126 382909954 382909827 1.070000e-24 124.0
42 TraesCS7A01G087500 chr5B 90.123 81 6 1 1 81 239439945 239440023 1.390000e-18 104.0
43 TraesCS7A01G087500 chr5B 100.000 33 0 0 1601 1633 382909497 382909465 8.510000e-06 62.1
44 TraesCS7A01G087500 chr4D 79.310 174 32 4 177 348 508098250 508098421 4.980000e-23 119.0
45 TraesCS7A01G087500 chr2A 90.361 83 6 1 1 83 46341176 46341256 1.080000e-19 108.0
46 TraesCS7A01G087500 chr1B 89.535 86 7 1 1 86 596317794 596317877 1.080000e-19 108.0
47 TraesCS7A01G087500 chr1B 81.560 141 17 9 174 308 644834179 644834042 1.080000e-19 108.0
48 TraesCS7A01G087500 chr2B 90.123 81 6 1 1 81 478891932 478892010 1.390000e-18 104.0
49 TraesCS7A01G087500 chr7B 88.095 84 8 1 1 84 44809565 44809484 6.490000e-17 99.0
50 TraesCS7A01G087500 chrUn 89.474 57 6 0 2781 2837 63881098 63881042 3.930000e-09 73.1
51 TraesCS7A01G087500 chr3D 97.297 37 1 0 2807 2843 580415502 580415466 2.370000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G087500 chr7A 52277901 52280745 2844 False 5254.000000 5254 100.000000 1 2845 1 chr7A.!!$F3 2844
1 TraesCS7A01G087500 chr7A 52386913 52388189 1276 False 384.333333 436 84.980000 999 2187 3 chr7A.!!$F5 1188
2 TraesCS7A01G087500 chr7A 50388337 50389143 806 True 298.500000 353 87.585000 999 1680 2 chr7A.!!$R3 681
3 TraesCS7A01G087500 chr7D 49380162 49382881 2719 False 1165.333333 2206 91.726000 1 2845 3 chr7D.!!$F2 2844
4 TraesCS7A01G087500 chr7D 47762684 47763350 666 True 641.000000 641 84.311000 1498 2167 1 chr7D.!!$R1 669
5 TraesCS7A01G087500 chr7D 49635923 49637207 1284 False 318.666667 497 83.125667 1368 2714 3 chr7D.!!$F3 1346
6 TraesCS7A01G087500 chr4A 663985317 663987394 2077 False 865.333333 1171 89.002333 127 2189 3 chr4A.!!$F1 2062
7 TraesCS7A01G087500 chr4A 664153150 664155000 1850 False 285.750000 433 81.139000 999 2751 4 chr4A.!!$F2 1752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 372 0.802494 GCGAGAGAAAATTTGCGGGA 59.198 50.0 0.0 0.0 0.0 5.14 F
372 393 0.968393 GCCGTTTGGGATGCCCTTAA 60.968 55.0 0.0 0.0 45.7 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1711 0.107654 CCTCCATCCGTCCACTTTCC 60.108 60.0 0.00 0.0 0.00 3.13 R
2088 2940 0.324275 ACACACACCAAAAGGTGCCT 60.324 50.0 14.19 0.0 42.99 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 8.114743 ACTACCTATATTACTCCCACTATGACC 58.885 40.741 0.00 0.00 0.00 4.02
84 85 4.140686 ACTCCCACTATGACCATCCTCATA 60.141 45.833 0.00 0.00 32.86 2.15
100 101 2.830923 CTCATAGCCGGAGATGAGGAAT 59.169 50.000 26.86 0.00 43.55 3.01
110 111 3.721370 ATGAGGAATGGGTGCCGGC 62.721 63.158 22.73 22.73 0.00 6.13
114 115 2.828549 GAATGGGTGCCGGCGATT 60.829 61.111 23.90 16.56 0.00 3.34
125 126 4.634443 GGTGCCGGCGATTATTTAGATTAT 59.366 41.667 23.90 0.00 0.00 1.28
276 296 5.736813 TGAAATGTATACGGCTAAGGTTGT 58.263 37.500 0.00 0.00 0.00 3.32
304 324 1.744320 CTCCGGCATCCGTATCCACA 61.744 60.000 0.00 0.00 46.80 4.17
310 330 1.409064 GCATCCGTATCCACAGACTGA 59.591 52.381 10.08 0.00 0.00 3.41
348 369 3.096461 CAGATGCGAGAGAAAATTTGCG 58.904 45.455 0.00 0.00 0.00 4.85
351 372 0.802494 GCGAGAGAAAATTTGCGGGA 59.198 50.000 0.00 0.00 0.00 5.14
372 393 0.968393 GCCGTTTGGGATGCCCTTAA 60.968 55.000 0.00 0.00 45.70 1.85
387 408 3.190535 GCCCTTAAAGCAACATCGAAGAA 59.809 43.478 0.00 0.00 43.58 2.52
388 409 4.672801 GCCCTTAAAGCAACATCGAAGAAG 60.673 45.833 0.00 0.00 43.58 2.85
389 410 4.695455 CCCTTAAAGCAACATCGAAGAAGA 59.305 41.667 0.00 0.00 43.58 2.87
390 411 5.355350 CCCTTAAAGCAACATCGAAGAAGAT 59.645 40.000 0.00 0.00 43.58 2.40
402 423 3.614176 TCGAAGAAGATCATTGCAACTCG 59.386 43.478 0.00 0.00 0.00 4.18
441 462 3.826524 TGTTTCTTCTTACCACATGGCA 58.173 40.909 0.00 0.00 39.32 4.92
442 463 4.406456 TGTTTCTTCTTACCACATGGCAT 58.594 39.130 0.00 0.00 39.32 4.40
443 464 4.218200 TGTTTCTTCTTACCACATGGCATG 59.782 41.667 25.31 25.31 39.32 4.06
444 465 3.719268 TCTTCTTACCACATGGCATGT 57.281 42.857 26.78 26.78 46.22 3.21
453 474 1.176527 ACATGGCATGTGTGGTAAGC 58.823 50.000 30.96 0.00 43.01 3.09
454 475 1.175654 CATGGCATGTGTGGTAAGCA 58.824 50.000 19.32 0.00 0.00 3.91
482 503 9.093458 ACAAAAGATCCCAATATTGTTTCTTCT 57.907 29.630 14.25 6.32 0.00 2.85
486 507 7.338710 AGATCCCAATATTGTTTCTTCTTCGA 58.661 34.615 14.25 0.00 0.00 3.71
630 651 2.077627 GAGCCTTTCGTTTTCCCTCTC 58.922 52.381 0.00 0.00 0.00 3.20
698 721 2.287909 GCTGGAGACGACATAGATGGTC 60.288 54.545 0.00 0.00 0.00 4.02
728 751 3.338275 TAGCCGGCATTGGTGGACC 62.338 63.158 31.54 0.00 0.00 4.46
788 831 1.067821 GTCAGCGAAGATCCGAATCCT 59.932 52.381 0.00 0.00 31.78 3.24
939 984 1.428912 TCTGGCTCCCAACCAAGAAAT 59.571 47.619 0.00 0.00 36.56 2.17
943 988 1.751351 GCTCCCAACCAAGAAATAGCC 59.249 52.381 0.00 0.00 0.00 3.93
1032 1077 1.680651 CCAGCTCTGGGACGAGACT 60.681 63.158 8.03 0.00 46.81 3.24
1146 1197 1.376466 GGTGACCCACAGCATCACT 59.624 57.895 0.00 0.00 45.12 3.41
1419 1555 2.507854 CCGTGACCACTGTCCCAGT 61.508 63.158 0.00 0.00 46.51 4.00
1426 1562 1.367471 CACTGTCCCAGTCGCAGAA 59.633 57.895 0.00 0.00 43.43 3.02
1530 1724 0.108520 GCATACGGAAAGTGGACGGA 60.109 55.000 0.00 0.00 0.00 4.69
1660 1855 1.739049 CCCTCGCTCTCACTCCATC 59.261 63.158 0.00 0.00 0.00 3.51
1799 2321 2.970640 AGGTGGTTCCGTTCTAACTCTT 59.029 45.455 0.00 0.00 41.99 2.85
2071 2923 2.359900 GGTTGAGGCAATCGAGATGTT 58.640 47.619 0.00 0.00 0.00 2.71
2084 2936 2.159787 CGAGATGTTTTGCCTTCACGAG 60.160 50.000 0.00 0.00 0.00 4.18
2148 3010 3.070476 TGAGGATGCAATGCAAGTGTA 57.930 42.857 13.45 0.00 43.62 2.90
2191 3053 8.857098 TCTTACTATCATTGTCCATGTACTACC 58.143 37.037 0.00 0.00 34.06 3.18
2192 3054 8.777578 TTACTATCATTGTCCATGTACTACCT 57.222 34.615 0.00 0.00 34.06 3.08
2193 3055 7.291411 ACTATCATTGTCCATGTACTACCTC 57.709 40.000 0.00 0.00 34.06 3.85
2194 3056 5.552870 ATCATTGTCCATGTACTACCTCC 57.447 43.478 0.00 0.00 34.06 4.30
2195 3057 3.383505 TCATTGTCCATGTACTACCTCCG 59.616 47.826 0.00 0.00 34.06 4.63
2196 3058 2.519771 TGTCCATGTACTACCTCCGT 57.480 50.000 0.00 0.00 0.00 4.69
2197 3059 2.372264 TGTCCATGTACTACCTCCGTC 58.628 52.381 0.00 0.00 0.00 4.79
2198 3060 1.680207 GTCCATGTACTACCTCCGTCC 59.320 57.143 0.00 0.00 0.00 4.79
2199 3061 1.038280 CCATGTACTACCTCCGTCCC 58.962 60.000 0.00 0.00 0.00 4.46
2200 3062 0.666913 CATGTACTACCTCCGTCCCG 59.333 60.000 0.00 0.00 0.00 5.14
2211 3073 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
2212 3074 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
2213 3075 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
2214 3076 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
2215 3077 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2216 3078 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2217 3079 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2218 3080 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2219 3081 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
2220 3082 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2221 3083 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
2222 3084 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
2223 3085 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2224 3086 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2225 3087 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2226 3088 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2227 3089 7.111317 GTGTATAAGTCATTCGCGTAGTTCTAC 59.889 40.741 5.77 7.59 0.00 2.59
2228 3090 3.048942 AGTCATTCGCGTAGTTCTACG 57.951 47.619 22.72 22.72 45.39 3.51
2229 3091 2.417933 AGTCATTCGCGTAGTTCTACGT 59.582 45.455 25.80 9.82 44.53 3.57
2230 3092 2.775149 GTCATTCGCGTAGTTCTACGTC 59.225 50.000 25.80 18.90 44.53 4.34
2231 3093 1.766301 CATTCGCGTAGTTCTACGTCG 59.234 52.381 25.80 25.97 44.53 5.12
2232 3094 1.067693 TTCGCGTAGTTCTACGTCGA 58.932 50.000 28.26 28.26 43.81 4.20
2233 3095 1.280982 TCGCGTAGTTCTACGTCGAT 58.719 50.000 28.26 0.00 44.53 3.59
2234 3096 2.459934 TCGCGTAGTTCTACGTCGATA 58.540 47.619 28.26 17.90 44.53 2.92
2235 3097 2.857748 TCGCGTAGTTCTACGTCGATAA 59.142 45.455 28.26 17.47 44.53 1.75
2236 3098 3.490896 TCGCGTAGTTCTACGTCGATAAT 59.509 43.478 28.26 0.00 44.53 1.28
2237 3099 4.025730 TCGCGTAGTTCTACGTCGATAATT 60.026 41.667 28.26 0.00 44.53 1.40
2238 3100 4.667948 CGCGTAGTTCTACGTCGATAATTT 59.332 41.667 27.02 0.00 44.53 1.82
2239 3101 5.840781 CGCGTAGTTCTACGTCGATAATTTA 59.159 40.000 27.02 0.00 44.53 1.40
2240 3102 6.354362 CGCGTAGTTCTACGTCGATAATTTAA 59.646 38.462 27.02 0.00 44.53 1.52
2241 3103 7.477949 GCGTAGTTCTACGTCGATAATTTAAC 58.522 38.462 25.80 7.71 44.53 2.01
2242 3104 7.374491 GCGTAGTTCTACGTCGATAATTTAACT 59.626 37.037 25.80 1.62 44.53 2.24
2243 3105 9.849607 CGTAGTTCTACGTCGATAATTTAACTA 57.150 33.333 19.94 0.00 38.52 2.24
2312 3174 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
2313 3175 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
2314 3176 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
2315 3177 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
2316 3178 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
2317 3179 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
2318 3180 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
2319 3181 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
2320 3182 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
2321 3183 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
2322 3184 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
2323 3185 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
2324 3186 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
2325 3187 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
2333 3195 9.547753 AGTGGTATACTTTTCATGACATATGAC 57.452 33.333 10.38 3.62 35.67 3.06
2334 3196 9.325198 GTGGTATACTTTTCATGACATATGACA 57.675 33.333 10.38 10.31 0.00 3.58
2335 3197 9.325198 TGGTATACTTTTCATGACATATGACAC 57.675 33.333 10.38 1.28 0.00 3.67
2336 3198 9.325198 GGTATACTTTTCATGACATATGACACA 57.675 33.333 10.38 7.05 0.00 3.72
2365 3227 9.456147 TTTAATTCCTTAAATCGATGACCAAGA 57.544 29.630 0.00 0.00 33.05 3.02
2366 3228 7.938140 AATTCCTTAAATCGATGACCAAGAA 57.062 32.000 0.00 0.00 0.00 2.52
2367 3229 6.737254 TTCCTTAAATCGATGACCAAGAAC 57.263 37.500 0.00 0.00 0.00 3.01
2368 3230 6.049955 TCCTTAAATCGATGACCAAGAACT 57.950 37.500 0.00 0.00 0.00 3.01
2369 3231 7.177832 TCCTTAAATCGATGACCAAGAACTA 57.822 36.000 0.00 0.00 0.00 2.24
2370 3232 7.039882 TCCTTAAATCGATGACCAAGAACTAC 58.960 38.462 0.00 0.00 0.00 2.73
2371 3233 6.019801 CCTTAAATCGATGACCAAGAACTACG 60.020 42.308 0.00 0.00 0.00 3.51
2372 3234 2.273370 TCGATGACCAAGAACTACGC 57.727 50.000 0.00 0.00 0.00 4.42
2373 3235 0.914551 CGATGACCAAGAACTACGCG 59.085 55.000 3.53 3.53 0.00 6.01
2374 3236 1.466866 CGATGACCAAGAACTACGCGA 60.467 52.381 15.93 0.00 0.00 5.87
2375 3237 2.602878 GATGACCAAGAACTACGCGAA 58.397 47.619 15.93 0.00 0.00 4.70
2376 3238 2.736144 TGACCAAGAACTACGCGAAT 57.264 45.000 15.93 0.00 0.00 3.34
2377 3239 2.333926 TGACCAAGAACTACGCGAATG 58.666 47.619 15.93 4.47 0.00 2.67
2378 3240 2.029739 TGACCAAGAACTACGCGAATGA 60.030 45.455 15.93 0.00 0.00 2.57
2379 3241 2.334838 ACCAAGAACTACGCGAATGAC 58.665 47.619 15.93 0.66 0.00 3.06
2380 3242 2.029290 ACCAAGAACTACGCGAATGACT 60.029 45.455 15.93 3.36 0.00 3.41
2381 3243 2.993899 CCAAGAACTACGCGAATGACTT 59.006 45.455 15.93 9.86 0.00 3.01
2382 3244 4.171005 CCAAGAACTACGCGAATGACTTA 58.829 43.478 15.93 0.00 0.00 2.24
2383 3245 4.804139 CCAAGAACTACGCGAATGACTTAT 59.196 41.667 15.93 0.00 0.00 1.73
2384 3246 5.975344 CCAAGAACTACGCGAATGACTTATA 59.025 40.000 15.93 0.00 0.00 0.98
2385 3247 6.074994 CCAAGAACTACGCGAATGACTTATAC 60.075 42.308 15.93 0.00 0.00 1.47
2386 3248 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2387 3249 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2388 3250 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2389 3251 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2390 3252 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2391 3253 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2392 3254 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2393 3255 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
2394 3256 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2395 3257 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2396 3258 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
2397 3259 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2398 3260 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2405 3267 2.274760 CCGGACGGAGGGAGTACT 59.725 66.667 4.40 0.00 37.50 2.73
2406 3268 2.119655 CCGGACGGAGGGAGTACTG 61.120 68.421 4.40 0.00 37.50 2.74
2465 3341 5.130350 ACAAATCACCCTAAATCATACCGG 58.870 41.667 0.00 0.00 0.00 5.28
2495 3371 1.131928 AGACGCCCCCTTAGTTGGTT 61.132 55.000 0.00 0.00 0.00 3.67
2496 3372 0.614812 GACGCCCCCTTAGTTGGTTA 59.385 55.000 0.00 0.00 0.00 2.85
2544 3421 3.886505 TGGGTGACTGCGAAAATAAGTTT 59.113 39.130 0.00 0.00 0.00 2.66
2670 3547 9.594478 AATTAAAAAGAACAGTTTGTAAGGTGG 57.406 29.630 0.00 0.00 0.00 4.61
2680 3559 8.245195 ACAGTTTGTAAGGTGGACATTAAAAT 57.755 30.769 0.00 0.00 0.00 1.82
2717 3597 9.377312 CTTTTAAGAAAGGTGGACATTTTCAAA 57.623 29.630 11.92 5.24 38.86 2.69
2806 3700 9.086758 TCTATACCTACTAATAAAGGAAGGTGC 57.913 37.037 10.08 0.00 42.57 5.01
2837 3731 2.679355 TTTTTCATCTGTTCACCGCG 57.321 45.000 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 7.841729 AGGATGGTCATAGTGGGAGTAATATAG 59.158 40.741 0.00 0.00 0.00 1.31
58 59 4.832492 AGGATGGTCATAGTGGGAGTAAT 58.168 43.478 0.00 0.00 0.00 1.89
75 76 2.166050 CTCATCTCCGGCTATGAGGATG 59.834 54.545 26.33 16.66 43.50 3.51
84 85 1.414061 CCCATTCCTCATCTCCGGCT 61.414 60.000 0.00 0.00 0.00 5.52
100 101 0.180642 TAAATAATCGCCGGCACCCA 59.819 50.000 28.98 8.93 0.00 4.51
125 126 5.700832 CGGCTCTTGAGGCATAATTAATACA 59.299 40.000 21.16 0.00 0.00 2.29
187 188 7.446931 TGGGCATATTTCATATAAACATGACGT 59.553 33.333 0.00 0.00 34.69 4.34
232 252 5.164233 TCAAACACTTTTGCAACAAATCGA 58.836 33.333 0.00 0.00 41.78 3.59
235 255 7.592051 ACATTTCAAACACTTTTGCAACAAAT 58.408 26.923 0.00 0.00 41.78 2.32
296 316 1.694696 GGGGGATCAGTCTGTGGATAC 59.305 57.143 0.00 0.00 0.00 2.24
298 318 0.344790 AGGGGGATCAGTCTGTGGAT 59.655 55.000 0.00 0.00 0.00 3.41
304 324 1.231641 CGGAGAGGGGGATCAGTCT 59.768 63.158 0.00 0.00 0.00 3.24
310 330 2.444895 GTCTGCGGAGAGGGGGAT 60.445 66.667 6.98 0.00 0.00 3.85
348 369 3.131478 CATCCCAAACGGCGTCCC 61.131 66.667 15.17 0.00 0.00 4.46
372 393 5.675575 GCAATGATCTTCTTCGATGTTGCTT 60.676 40.000 11.07 0.00 37.94 3.91
387 408 2.289631 TGGTGTCGAGTTGCAATGATCT 60.290 45.455 0.59 0.00 0.00 2.75
388 409 2.076100 TGGTGTCGAGTTGCAATGATC 58.924 47.619 0.59 0.55 0.00 2.92
389 410 2.079158 CTGGTGTCGAGTTGCAATGAT 58.921 47.619 0.59 0.00 0.00 2.45
390 411 1.069978 TCTGGTGTCGAGTTGCAATGA 59.930 47.619 0.59 0.00 0.00 2.57
402 423 1.342819 ACAAGTGAGAGCTCTGGTGTC 59.657 52.381 23.91 7.00 0.00 3.67
441 462 5.590530 TCTTTTGTTTGCTTACCACACAT 57.409 34.783 0.00 0.00 34.36 3.21
442 463 5.451242 GGATCTTTTGTTTGCTTACCACACA 60.451 40.000 0.00 0.00 32.57 3.72
443 464 4.982295 GGATCTTTTGTTTGCTTACCACAC 59.018 41.667 0.00 0.00 0.00 3.82
444 465 4.038642 GGGATCTTTTGTTTGCTTACCACA 59.961 41.667 0.00 0.00 0.00 4.17
445 466 4.038642 TGGGATCTTTTGTTTGCTTACCAC 59.961 41.667 0.00 0.00 0.00 4.16
446 467 4.219115 TGGGATCTTTTGTTTGCTTACCA 58.781 39.130 0.00 0.00 0.00 3.25
447 468 4.864704 TGGGATCTTTTGTTTGCTTACC 57.135 40.909 0.00 0.00 0.00 2.85
448 469 8.872845 CAATATTGGGATCTTTTGTTTGCTTAC 58.127 33.333 7.62 0.00 0.00 2.34
449 470 8.592809 ACAATATTGGGATCTTTTGTTTGCTTA 58.407 29.630 19.37 0.00 0.00 3.09
450 471 7.452562 ACAATATTGGGATCTTTTGTTTGCTT 58.547 30.769 19.37 0.00 0.00 3.91
451 472 7.008021 ACAATATTGGGATCTTTTGTTTGCT 57.992 32.000 19.37 0.00 0.00 3.91
452 473 7.671495 AACAATATTGGGATCTTTTGTTTGC 57.329 32.000 19.37 0.00 34.60 3.68
453 474 9.492973 AGAAACAATATTGGGATCTTTTGTTTG 57.507 29.630 19.37 6.57 43.44 2.93
486 507 2.093106 GGAGGACGATGCGGATAGTAT 58.907 52.381 2.07 0.00 0.00 2.12
539 560 9.509956 TTGATTCGTTTCTTTTAGGAATTAGGA 57.490 29.630 0.00 0.00 32.14 2.94
540 561 9.556030 GTTGATTCGTTTCTTTTAGGAATTAGG 57.444 33.333 0.00 0.00 32.14 2.69
543 564 9.626045 GATGTTGATTCGTTTCTTTTAGGAATT 57.374 29.630 0.00 0.00 32.14 2.17
544 565 8.792633 TGATGTTGATTCGTTTCTTTTAGGAAT 58.207 29.630 0.00 0.00 34.01 3.01
545 566 8.073768 GTGATGTTGATTCGTTTCTTTTAGGAA 58.926 33.333 0.00 0.00 0.00 3.36
582 603 4.842531 TGAGATGCCCAGAGTTGAAATA 57.157 40.909 0.00 0.00 0.00 1.40
630 651 3.302344 CGGGCTGGGTTGGTTTGG 61.302 66.667 0.00 0.00 0.00 3.28
698 721 1.300931 CCGGCTACCATGACCATCG 60.301 63.158 0.00 0.00 0.00 3.84
1136 1187 1.068083 CGGGCGATAGTGATGCTGT 59.932 57.895 0.00 0.00 39.35 4.40
1419 1555 2.107950 ATTTCCCGACATTTCTGCGA 57.892 45.000 0.00 0.00 0.00 5.10
1426 1562 3.320541 TCAACAGCAAATTTCCCGACATT 59.679 39.130 0.00 0.00 0.00 2.71
1514 1708 0.533491 CCATCCGTCCACTTTCCGTA 59.467 55.000 0.00 0.00 0.00 4.02
1515 1709 1.189524 TCCATCCGTCCACTTTCCGT 61.190 55.000 0.00 0.00 0.00 4.69
1517 1711 0.107654 CCTCCATCCGTCCACTTTCC 60.108 60.000 0.00 0.00 0.00 3.13
1520 1714 2.670148 GCCCTCCATCCGTCCACTT 61.670 63.158 0.00 0.00 0.00 3.16
1521 1715 3.083997 GCCCTCCATCCGTCCACT 61.084 66.667 0.00 0.00 0.00 4.00
1660 1855 2.026641 CATTGGTATGGTGCAAGGAGG 58.973 52.381 0.00 0.00 0.00 4.30
1799 2321 2.591429 CTGCAAGCACACCGACCA 60.591 61.111 0.00 0.00 0.00 4.02
2084 2936 1.069596 CACCAAAAGGTGCCTTGCC 59.930 57.895 4.00 0.00 36.26 4.52
2086 2938 0.823460 ACACACCAAAAGGTGCCTTG 59.177 50.000 14.19 8.13 42.99 3.61
2087 2939 0.823460 CACACACCAAAAGGTGCCTT 59.177 50.000 14.19 0.00 42.99 4.35
2088 2940 0.324275 ACACACACCAAAAGGTGCCT 60.324 50.000 14.19 0.00 42.99 4.75
2148 3010 6.560253 AGTAAGAAAACGAAGCATGATTGT 57.440 33.333 0.00 0.00 0.00 2.71
2195 3057 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
2196 3058 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
2197 3059 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
2198 3060 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
2199 3061 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
2200 3062 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2201 3063 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2202 3064 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2203 3065 7.532100 GTAGAACTACGCGAATGACTTATAC 57.468 40.000 15.93 3.22 0.00 1.47
2275 3137 9.887629 TCCACACGGATGTACTTTTTAAATATA 57.112 29.630 0.00 0.00 36.72 0.86
2276 3138 8.795842 TCCACACGGATGTACTTTTTAAATAT 57.204 30.769 0.00 0.00 36.72 1.28
2277 3139 8.618702 TTCCACACGGATGTACTTTTTAAATA 57.381 30.769 0.00 0.00 42.41 1.40
2278 3140 7.513371 TTCCACACGGATGTACTTTTTAAAT 57.487 32.000 0.00 0.00 42.41 1.40
2279 3141 6.939132 TTCCACACGGATGTACTTTTTAAA 57.061 33.333 0.00 0.00 42.41 1.52
2280 3142 6.939132 TTTCCACACGGATGTACTTTTTAA 57.061 33.333 0.00 0.00 42.41 1.52
2281 3143 6.938030 AGATTTCCACACGGATGTACTTTTTA 59.062 34.615 0.00 0.00 42.41 1.52
2282 3144 5.768164 AGATTTCCACACGGATGTACTTTTT 59.232 36.000 0.00 0.00 42.41 1.94
2283 3145 5.313712 AGATTTCCACACGGATGTACTTTT 58.686 37.500 0.00 0.00 42.41 2.27
2284 3146 4.906618 AGATTTCCACACGGATGTACTTT 58.093 39.130 0.00 0.00 42.41 2.66
2285 3147 4.553330 AGATTTCCACACGGATGTACTT 57.447 40.909 0.00 0.00 42.41 2.24
2286 3148 4.710375 ACTAGATTTCCACACGGATGTACT 59.290 41.667 0.00 0.00 42.41 2.73
2287 3149 4.804139 CACTAGATTTCCACACGGATGTAC 59.196 45.833 0.00 0.00 42.41 2.90
2288 3150 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
2289 3151 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
2290 3152 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
2291 3153 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
2292 3154 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
2293 3155 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
2294 3156 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
2295 3157 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
2296 3158 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
2297 3159 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
2298 3160 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
2299 3161 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
2307 3169 9.547753 GTCATATGTCATGAAAAGTATACCACT 57.452 33.333 0.00 0.00 40.05 4.00
2308 3170 9.325198 TGTCATATGTCATGAAAAGTATACCAC 57.675 33.333 0.00 0.00 0.00 4.16
2309 3171 9.325198 GTGTCATATGTCATGAAAAGTATACCA 57.675 33.333 5.94 0.00 0.00 3.25
2310 3172 9.325198 TGTGTCATATGTCATGAAAAGTATACC 57.675 33.333 5.94 0.00 0.00 2.73
2339 3201 9.456147 TCTTGGTCATCGATTTAAGGAATTAAA 57.544 29.630 0.00 0.00 0.00 1.52
2340 3202 9.456147 TTCTTGGTCATCGATTTAAGGAATTAA 57.544 29.630 0.00 0.00 0.00 1.40
2341 3203 8.889717 GTTCTTGGTCATCGATTTAAGGAATTA 58.110 33.333 0.00 0.00 0.00 1.40
2342 3204 7.611855 AGTTCTTGGTCATCGATTTAAGGAATT 59.388 33.333 0.00 0.00 0.00 2.17
2343 3205 7.112779 AGTTCTTGGTCATCGATTTAAGGAAT 58.887 34.615 0.00 0.00 0.00 3.01
2344 3206 6.472887 AGTTCTTGGTCATCGATTTAAGGAA 58.527 36.000 0.00 0.00 0.00 3.36
2345 3207 6.049955 AGTTCTTGGTCATCGATTTAAGGA 57.950 37.500 0.00 0.00 0.00 3.36
2346 3208 6.019801 CGTAGTTCTTGGTCATCGATTTAAGG 60.020 42.308 0.00 0.00 0.00 2.69
2347 3209 6.508088 GCGTAGTTCTTGGTCATCGATTTAAG 60.508 42.308 0.00 0.00 0.00 1.85
2348 3210 5.290158 GCGTAGTTCTTGGTCATCGATTTAA 59.710 40.000 0.00 0.00 0.00 1.52
2349 3211 4.802039 GCGTAGTTCTTGGTCATCGATTTA 59.198 41.667 0.00 0.00 0.00 1.40
2350 3212 3.617263 GCGTAGTTCTTGGTCATCGATTT 59.383 43.478 0.00 0.00 0.00 2.17
2351 3213 3.187700 GCGTAGTTCTTGGTCATCGATT 58.812 45.455 0.00 0.00 0.00 3.34
2352 3214 2.794981 CGCGTAGTTCTTGGTCATCGAT 60.795 50.000 0.00 0.00 0.00 3.59
2353 3215 1.466866 CGCGTAGTTCTTGGTCATCGA 60.467 52.381 0.00 0.00 0.00 3.59
2354 3216 0.914551 CGCGTAGTTCTTGGTCATCG 59.085 55.000 0.00 0.00 0.00 3.84
2355 3217 2.273370 TCGCGTAGTTCTTGGTCATC 57.727 50.000 5.77 0.00 0.00 2.92
2356 3218 2.736144 TTCGCGTAGTTCTTGGTCAT 57.264 45.000 5.77 0.00 0.00 3.06
2357 3219 2.029739 TCATTCGCGTAGTTCTTGGTCA 60.030 45.455 5.77 0.00 0.00 4.02
2358 3220 2.344741 GTCATTCGCGTAGTTCTTGGTC 59.655 50.000 5.77 0.00 0.00 4.02
2359 3221 2.029290 AGTCATTCGCGTAGTTCTTGGT 60.029 45.455 5.77 0.00 0.00 3.67
2360 3222 2.607187 AGTCATTCGCGTAGTTCTTGG 58.393 47.619 5.77 0.00 0.00 3.61
2361 3223 5.950965 ATAAGTCATTCGCGTAGTTCTTG 57.049 39.130 5.77 0.00 0.00 3.02
2362 3224 6.471519 GTGTATAAGTCATTCGCGTAGTTCTT 59.528 38.462 5.77 9.58 0.00 2.52
2363 3225 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2364 3226 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2365 3227 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2366 3228 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2367 3229 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2368 3230 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2369 3231 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2370 3232 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2371 3233 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2372 3234 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2373 3235 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2374 3236 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2375 3237 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2376 3238 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2377 3239 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
2378 3240 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
2379 3241 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2380 3242 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2381 3243 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
2382 3244 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2383 3245 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
2385 3247 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
2386 3248 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
2387 3249 2.832201 GTACTCCCTCCGTCCGGG 60.832 72.222 0.00 0.00 43.38 5.73
2388 3250 2.119655 CAGTACTCCCTCCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
2389 3251 0.107508 TACAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
2390 3252 2.134789 TTACAGTACTCCCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
2391 3253 3.698040 TCAATTACAGTACTCCCTCCGTC 59.302 47.826 0.00 0.00 0.00 4.79
2392 3254 3.700038 CTCAATTACAGTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
2393 3255 3.700038 ACTCAATTACAGTACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
2394 3256 5.068855 GGTACTCAATTACAGTACTCCCTCC 59.931 48.000 19.23 5.51 43.96 4.30
2395 3257 5.655532 TGGTACTCAATTACAGTACTCCCTC 59.344 44.000 19.23 8.72 43.96 4.30
2396 3258 5.586877 TGGTACTCAATTACAGTACTCCCT 58.413 41.667 19.23 0.00 43.96 4.20
2397 3259 5.927281 TGGTACTCAATTACAGTACTCCC 57.073 43.478 19.23 9.36 43.96 4.30
2398 3260 6.757010 CACATGGTACTCAATTACAGTACTCC 59.243 42.308 19.23 9.85 43.96 3.85
2399 3261 7.275779 CACACATGGTACTCAATTACAGTACTC 59.724 40.741 19.23 13.12 43.96 2.59
2400 3262 7.097192 CACACATGGTACTCAATTACAGTACT 58.903 38.462 19.23 0.00 43.96 2.73
2401 3263 6.872020 ACACACATGGTACTCAATTACAGTAC 59.128 38.462 14.56 14.56 43.82 2.73
2402 3264 6.999950 ACACACATGGTACTCAATTACAGTA 58.000 36.000 0.00 0.00 0.00 2.74
2403 3265 5.865085 ACACACATGGTACTCAATTACAGT 58.135 37.500 0.00 0.00 0.00 3.55
2404 3266 6.091305 CAGACACACATGGTACTCAATTACAG 59.909 42.308 0.00 0.00 0.00 2.74
2405 3267 5.931724 CAGACACACATGGTACTCAATTACA 59.068 40.000 0.00 0.00 0.00 2.41
2406 3268 5.351465 CCAGACACACATGGTACTCAATTAC 59.649 44.000 0.00 0.00 0.00 1.89
2465 3341 2.700773 GGGCGTCTGTTCCATTGGC 61.701 63.158 0.00 0.00 0.00 4.52
2480 3356 3.828921 CCTTATAACCAACTAAGGGGGC 58.171 50.000 0.00 0.00 40.13 5.80
2495 3371 2.506644 CCCAAAAGACCCGACCCTTATA 59.493 50.000 0.00 0.00 0.00 0.98
2496 3372 1.283905 CCCAAAAGACCCGACCCTTAT 59.716 52.381 0.00 0.00 0.00 1.73
2544 3421 1.578703 TCCATAAGCTGGGTAGAGGGA 59.421 52.381 0.00 0.00 45.98 4.20
2691 3571 8.940768 TTGAAAATGTCCACCTTTCTTAAAAG 57.059 30.769 0.00 0.00 41.36 2.27
2827 3721 4.859400 TCTTTTCCGCGGTGAACA 57.141 50.000 27.15 5.04 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.