Multiple sequence alignment - TraesCS7A01G087400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G087400 chr7A 100.000 3274 0 0 1 3274 51663619 51660346 0.000000e+00 6047.0
1 TraesCS7A01G087400 chr7A 92.754 759 51 4 1 755 721879405 721878647 0.000000e+00 1094.0
2 TraesCS7A01G087400 chr7A 92.428 766 49 7 1 759 709272859 709273622 0.000000e+00 1085.0
3 TraesCS7A01G087400 chr7A 91.917 767 57 5 1 762 85203343 85204109 0.000000e+00 1068.0
4 TraesCS7A01G087400 chr7A 87.500 184 17 2 2066 2246 51382332 51382152 1.190000e-49 207.0
5 TraesCS7A01G087400 chr4A 92.929 1584 78 11 757 2335 663696462 663694908 0.000000e+00 2274.0
6 TraesCS7A01G087400 chr4A 81.302 1091 162 28 1125 2197 604105180 604104114 0.000000e+00 846.0
7 TraesCS7A01G087400 chr4A 75.361 1108 204 38 1132 2197 684977109 684978189 1.380000e-128 470.0
8 TraesCS7A01G087400 chr4A 75.978 895 172 25 1332 2197 602863356 602864236 3.910000e-114 422.0
9 TraesCS7A01G087400 chr4A 83.967 368 42 7 2331 2698 102608833 102609183 1.460000e-88 337.0
10 TraesCS7A01G087400 chr4A 94.737 38 2 0 1254 1291 602863257 602863294 3.530000e-05 60.2
11 TraesCS7A01G087400 chr7D 92.380 1588 98 8 757 2335 48825236 48823663 0.000000e+00 2241.0
12 TraesCS7A01G087400 chr7D 80.944 1081 184 17 1125 2202 624769138 624770199 0.000000e+00 835.0
13 TraesCS7A01G087400 chr2A 93.017 759 47 6 1 755 586905871 586905115 0.000000e+00 1103.0
14 TraesCS7A01G087400 chr2A 92.237 760 54 5 1 755 682013447 682012688 0.000000e+00 1072.0
15 TraesCS7A01G087400 chr2A 76.819 1113 190 35 1128 2197 723828524 723827437 6.130000e-157 564.0
16 TraesCS7A01G087400 chr2A 87.611 113 14 0 1113 1225 20329340 20329452 7.370000e-27 132.0
17 TraesCS7A01G087400 chr3A 92.267 763 50 6 2 755 290420698 290419936 0.000000e+00 1074.0
18 TraesCS7A01G087400 chr3A 92.136 763 56 4 1 759 677125375 677124613 0.000000e+00 1074.0
19 TraesCS7A01G087400 chr3A 81.129 1081 171 25 1125 2198 663451921 663450867 0.000000e+00 835.0
20 TraesCS7A01G087400 chr3A 90.543 571 54 0 2704 3274 377805890 377805320 0.000000e+00 756.0
21 TraesCS7A01G087400 chr1A 92.037 766 51 7 1 759 16862132 16861370 0.000000e+00 1068.0
22 TraesCS7A01G087400 chr5A 92.095 759 56 4 1 755 447194059 447193301 0.000000e+00 1066.0
23 TraesCS7A01G087400 chrUn 98.599 571 8 0 2704 3274 71102593 71103163 0.000000e+00 1011.0
24 TraesCS7A01G087400 chrUn 98.599 571 8 0 2704 3274 281490718 281490148 0.000000e+00 1011.0
25 TraesCS7A01G087400 chrUn 98.370 368 6 0 2334 2701 71102375 71102742 0.000000e+00 647.0
26 TraesCS7A01G087400 chrUn 98.370 368 6 0 2334 2701 281490936 281490569 0.000000e+00 647.0
27 TraesCS7A01G087400 chrUn 88.052 385 33 3 2704 3088 300902682 300902311 8.340000e-121 444.0
28 TraesCS7A01G087400 chrUn 78.070 684 117 21 1391 2047 28781714 28782391 5.090000e-108 401.0
29 TraesCS7A01G087400 chrUn 92.446 278 20 1 2422 2699 300902811 300902535 2.370000e-106 396.0
30 TraesCS7A01G087400 chrUn 86.842 114 15 0 1113 1226 24658129 24658016 9.540000e-26 128.0
31 TraesCS7A01G087400 chrUn 72.831 438 94 19 1113 1548 215704212 215703798 3.430000e-25 126.0
32 TraesCS7A01G087400 chr3D 95.447 571 26 0 2704 3274 4858129 4857559 0.000000e+00 911.0
33 TraesCS7A01G087400 chr3D 81.701 1082 166 23 1125 2198 529496480 529495423 0.000000e+00 872.0
34 TraesCS7A01G087400 chr3D 80.481 1081 156 39 1125 2198 529503733 529502701 0.000000e+00 776.0
35 TraesCS7A01G087400 chr3D 88.266 571 50 4 2704 3274 288121222 288120669 0.000000e+00 667.0
36 TraesCS7A01G087400 chr3D 96.117 206 8 0 2496 2701 4858185 4857980 1.460000e-88 337.0
37 TraesCS7A01G087400 chr2D 82.206 1079 155 27 1133 2197 13770235 13771290 0.000000e+00 894.0
38 TraesCS7A01G087400 chr3B 81.860 1075 164 23 1125 2193 700234852 700235901 0.000000e+00 876.0
39 TraesCS7A01G087400 chr3B 94.046 571 18 4 2704 3274 723662694 723662140 0.000000e+00 852.0
40 TraesCS7A01G087400 chr3B 96.185 367 14 0 2335 2701 723662911 723662545 4.670000e-168 601.0
41 TraesCS7A01G087400 chr2B 81.181 1084 158 34 1128 2197 25069208 25070259 0.000000e+00 830.0
42 TraesCS7A01G087400 chr2B 77.076 1108 190 41 1128 2197 713695121 713694040 6.090000e-162 580.0
43 TraesCS7A01G087400 chr2B 86.815 493 61 4 2704 3195 583061746 583062235 6.180000e-152 547.0
44 TraesCS7A01G087400 chr2B 73.059 438 93 19 1113 1548 32964957 32964543 7.370000e-27 132.0
45 TraesCS7A01G087400 chr5B 80.822 1095 169 24 1125 2200 710608536 710609608 0.000000e+00 821.0
46 TraesCS7A01G087400 chr5B 95.046 323 15 1 2336 2658 662963874 662963553 1.050000e-139 507.0
47 TraesCS7A01G087400 chr5D 81.290 1085 134 42 1125 2200 560224918 560225942 0.000000e+00 815.0
48 TraesCS7A01G087400 chr5D 77.572 972 162 39 1132 2090 557577275 557578203 1.340000e-148 536.0
49 TraesCS7A01G087400 chr6B 92.294 571 44 0 2704 3274 558781531 558780961 0.000000e+00 811.0
50 TraesCS7A01G087400 chr6B 92.119 571 45 0 2704 3274 558864252 558863682 0.000000e+00 806.0
51 TraesCS7A01G087400 chr6B 91.130 575 47 3 2704 3274 558698677 558698103 0.000000e+00 776.0
52 TraesCS7A01G087400 chr6B 89.298 570 48 7 2705 3274 19365192 19364636 0.000000e+00 702.0
53 TraesCS7A01G087400 chr6B 91.281 367 32 0 2335 2701 558698894 558698528 4.880000e-138 501.0
54 TraesCS7A01G087400 chr6B 90.811 370 33 1 2333 2701 558781751 558781382 8.160000e-136 494.0
55 TraesCS7A01G087400 chr6B 90.811 370 33 1 2333 2701 558864472 558864103 8.160000e-136 494.0
56 TraesCS7A01G087400 chr6B 93.103 203 14 0 2499 2701 19365246 19365044 6.870000e-77 298.0
57 TraesCS7A01G087400 chr6B 92.969 128 7 2 2383 2510 19367866 19367741 5.580000e-43 185.0
58 TraesCS7A01G087400 chr6B 76.923 221 44 6 1902 2120 187212709 187212494 5.740000e-23 119.0
59 TraesCS7A01G087400 chr1B 92.617 447 33 0 2704 3150 589705516 589705070 0.000000e+00 643.0
60 TraesCS7A01G087400 chr1B 93.082 318 21 1 2384 2700 589705685 589705368 6.400000e-127 464.0
61 TraesCS7A01G087400 chr4B 76.860 981 146 46 1112 2047 668873292 668874236 2.290000e-131 479.0
62 TraesCS7A01G087400 chr4B 75.893 896 167 26 1332 2195 3785099 3785977 2.350000e-111 412.0
63 TraesCS7A01G087400 chr4D 78.013 755 121 19 1125 1861 3260767 3260040 1.800000e-117 433.0
64 TraesCS7A01G087400 chr4D 77.918 317 61 8 1884 2197 3259975 3259665 4.310000e-44 189.0
65 TraesCS7A01G087400 chr1D 93.868 212 13 0 2337 2548 414244545 414244756 1.470000e-83 320.0
66 TraesCS7A01G087400 chr6D 83.468 248 36 2 2704 2951 472261019 472260777 3.290000e-55 226.0
67 TraesCS7A01G087400 chr6D 90.909 44 2 2 1356 1397 14523230 14523187 1.270000e-04 58.4
68 TraesCS7A01G087400 chr7B 81.749 263 34 3 1936 2198 673116 672868 1.190000e-49 207.0
69 TraesCS7A01G087400 chr7B 78.671 286 50 11 1916 2197 385435291 385435013 2.600000e-41 180.0
70 TraesCS7A01G087400 chr7B 93.151 73 5 0 1148 1220 673523 673451 1.240000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G087400 chr7A 51660346 51663619 3273 True 6047.0 6047 100.0000 1 3274 1 chr7A.!!$R2 3273
1 TraesCS7A01G087400 chr7A 721878647 721879405 758 True 1094.0 1094 92.7540 1 755 1 chr7A.!!$R3 754
2 TraesCS7A01G087400 chr7A 709272859 709273622 763 False 1085.0 1085 92.4280 1 759 1 chr7A.!!$F2 758
3 TraesCS7A01G087400 chr7A 85203343 85204109 766 False 1068.0 1068 91.9170 1 762 1 chr7A.!!$F1 761
4 TraesCS7A01G087400 chr4A 663694908 663696462 1554 True 2274.0 2274 92.9290 757 2335 1 chr4A.!!$R2 1578
5 TraesCS7A01G087400 chr4A 604104114 604105180 1066 True 846.0 846 81.3020 1125 2197 1 chr4A.!!$R1 1072
6 TraesCS7A01G087400 chr4A 684977109 684978189 1080 False 470.0 470 75.3610 1132 2197 1 chr4A.!!$F2 1065
7 TraesCS7A01G087400 chr4A 602863257 602864236 979 False 241.1 422 85.3575 1254 2197 2 chr4A.!!$F3 943
8 TraesCS7A01G087400 chr7D 48823663 48825236 1573 True 2241.0 2241 92.3800 757 2335 1 chr7D.!!$R1 1578
9 TraesCS7A01G087400 chr7D 624769138 624770199 1061 False 835.0 835 80.9440 1125 2202 1 chr7D.!!$F1 1077
10 TraesCS7A01G087400 chr2A 586905115 586905871 756 True 1103.0 1103 93.0170 1 755 1 chr2A.!!$R1 754
11 TraesCS7A01G087400 chr2A 682012688 682013447 759 True 1072.0 1072 92.2370 1 755 1 chr2A.!!$R2 754
12 TraesCS7A01G087400 chr2A 723827437 723828524 1087 True 564.0 564 76.8190 1128 2197 1 chr2A.!!$R3 1069
13 TraesCS7A01G087400 chr3A 290419936 290420698 762 True 1074.0 1074 92.2670 2 755 1 chr3A.!!$R1 753
14 TraesCS7A01G087400 chr3A 677124613 677125375 762 True 1074.0 1074 92.1360 1 759 1 chr3A.!!$R4 758
15 TraesCS7A01G087400 chr3A 663450867 663451921 1054 True 835.0 835 81.1290 1125 2198 1 chr3A.!!$R3 1073
16 TraesCS7A01G087400 chr3A 377805320 377805890 570 True 756.0 756 90.5430 2704 3274 1 chr3A.!!$R2 570
17 TraesCS7A01G087400 chr1A 16861370 16862132 762 True 1068.0 1068 92.0370 1 759 1 chr1A.!!$R1 758
18 TraesCS7A01G087400 chr5A 447193301 447194059 758 True 1066.0 1066 92.0950 1 755 1 chr5A.!!$R1 754
19 TraesCS7A01G087400 chrUn 71102375 71103163 788 False 829.0 1011 98.4845 2334 3274 2 chrUn.!!$F2 940
20 TraesCS7A01G087400 chrUn 281490148 281490936 788 True 829.0 1011 98.4845 2334 3274 2 chrUn.!!$R3 940
21 TraesCS7A01G087400 chrUn 300902311 300902811 500 True 420.0 444 90.2490 2422 3088 2 chrUn.!!$R4 666
22 TraesCS7A01G087400 chrUn 28781714 28782391 677 False 401.0 401 78.0700 1391 2047 1 chrUn.!!$F1 656
23 TraesCS7A01G087400 chr3D 529495423 529496480 1057 True 872.0 872 81.7010 1125 2198 1 chr3D.!!$R2 1073
24 TraesCS7A01G087400 chr3D 529502701 529503733 1032 True 776.0 776 80.4810 1125 2198 1 chr3D.!!$R3 1073
25 TraesCS7A01G087400 chr3D 288120669 288121222 553 True 667.0 667 88.2660 2704 3274 1 chr3D.!!$R1 570
26 TraesCS7A01G087400 chr3D 4857559 4858185 626 True 624.0 911 95.7820 2496 3274 2 chr3D.!!$R4 778
27 TraesCS7A01G087400 chr2D 13770235 13771290 1055 False 894.0 894 82.2060 1133 2197 1 chr2D.!!$F1 1064
28 TraesCS7A01G087400 chr3B 700234852 700235901 1049 False 876.0 876 81.8600 1125 2193 1 chr3B.!!$F1 1068
29 TraesCS7A01G087400 chr3B 723662140 723662911 771 True 726.5 852 95.1155 2335 3274 2 chr3B.!!$R1 939
30 TraesCS7A01G087400 chr2B 25069208 25070259 1051 False 830.0 830 81.1810 1128 2197 1 chr2B.!!$F1 1069
31 TraesCS7A01G087400 chr2B 713694040 713695121 1081 True 580.0 580 77.0760 1128 2197 1 chr2B.!!$R2 1069
32 TraesCS7A01G087400 chr5B 710608536 710609608 1072 False 821.0 821 80.8220 1125 2200 1 chr5B.!!$F1 1075
33 TraesCS7A01G087400 chr5D 560224918 560225942 1024 False 815.0 815 81.2900 1125 2200 1 chr5D.!!$F2 1075
34 TraesCS7A01G087400 chr5D 557577275 557578203 928 False 536.0 536 77.5720 1132 2090 1 chr5D.!!$F1 958
35 TraesCS7A01G087400 chr6B 558780961 558781751 790 True 652.5 811 91.5525 2333 3274 2 chr6B.!!$R4 941
36 TraesCS7A01G087400 chr6B 558863682 558864472 790 True 650.0 806 91.4650 2333 3274 2 chr6B.!!$R5 941
37 TraesCS7A01G087400 chr6B 558698103 558698894 791 True 638.5 776 91.2055 2335 3274 2 chr6B.!!$R3 939
38 TraesCS7A01G087400 chr6B 19364636 19367866 3230 True 395.0 702 91.7900 2383 3274 3 chr6B.!!$R2 891
39 TraesCS7A01G087400 chr1B 589705070 589705685 615 True 553.5 643 92.8495 2384 3150 2 chr1B.!!$R1 766
40 TraesCS7A01G087400 chr4B 668873292 668874236 944 False 479.0 479 76.8600 1112 2047 1 chr4B.!!$F2 935
41 TraesCS7A01G087400 chr4B 3785099 3785977 878 False 412.0 412 75.8930 1332 2195 1 chr4B.!!$F1 863
42 TraesCS7A01G087400 chr4D 3259665 3260767 1102 True 311.0 433 77.9655 1125 2197 2 chr4D.!!$R1 1072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 753 1.077429 CCTAGGGAGGCCTTTGTGC 60.077 63.158 6.77 0.0 35.54 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2702 5370 0.250945 TATGTTTCAAGTGGCGGCCA 60.251 50.0 19.77 19.77 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.203758 TCGGGTAACGGGGGAACA 60.204 61.111 0.00 0.00 44.45 3.18
370 376 3.488090 CGAGAACCGCCGGCTTTC 61.488 66.667 26.68 24.76 0.00 2.62
696 710 4.765611 GCGACTGGGCGATTTTTC 57.234 55.556 0.00 0.00 0.00 2.29
697 711 1.873165 GCGACTGGGCGATTTTTCA 59.127 52.632 0.00 0.00 0.00 2.69
699 713 1.135402 GCGACTGGGCGATTTTTCAAT 60.135 47.619 0.00 0.00 0.00 2.57
700 714 2.518949 CGACTGGGCGATTTTTCAATG 58.481 47.619 0.00 0.00 0.00 2.82
701 715 2.095263 CGACTGGGCGATTTTTCAATGT 60.095 45.455 0.00 0.00 0.00 2.71
703 717 2.095263 ACTGGGCGATTTTTCAATGTCG 60.095 45.455 0.00 0.00 37.17 4.35
706 720 1.975837 GCGATTTTTCAATGTCGGCA 58.024 45.000 0.00 0.00 34.85 5.69
707 721 1.648681 GCGATTTTTCAATGTCGGCAC 59.351 47.619 0.00 0.00 34.85 5.01
735 753 1.077429 CCTAGGGAGGCCTTTGTGC 60.077 63.158 6.77 0.00 35.54 4.57
782 800 1.251527 TTGCCTCCTCGTCTCCACTC 61.252 60.000 0.00 0.00 0.00 3.51
784 802 1.381165 GCCTCCTCGTCTCCACTCTC 61.381 65.000 0.00 0.00 0.00 3.20
1059 1077 3.978723 CTCGCAGTCACAGAGCCCG 62.979 68.421 0.00 0.00 0.00 6.13
1082 1100 3.545124 GACATGTCCACCACCGCCA 62.545 63.158 15.31 0.00 0.00 5.69
1084 1102 4.344865 ATGTCCACCACCGCCACC 62.345 66.667 0.00 0.00 0.00 4.61
1120 1138 4.492160 GCAGATGACGACCGCCGA 62.492 66.667 0.00 0.00 41.76 5.54
1122 1140 3.060000 AGATGACGACCGCCGACA 61.060 61.111 0.00 3.16 45.70 4.35
1248 1269 3.827898 GTACGCGCCTCCTCAGCT 61.828 66.667 5.73 0.00 0.00 4.24
1894 2026 2.586792 GGCTCCGCTGAGTGGATT 59.413 61.111 16.10 0.00 41.66 3.01
1952 2087 2.716017 GGCGACTACCTGCAGCTCT 61.716 63.158 8.66 0.00 0.00 4.09
2219 2380 3.305950 GGAGCGCAGATGATGTATCTTCT 60.306 47.826 11.47 4.87 43.68 2.85
2285 2449 4.111916 CGTGGATTAATTGGGCATTCAAC 58.888 43.478 0.00 0.00 0.00 3.18
2286 2450 4.381398 CGTGGATTAATTGGGCATTCAACA 60.381 41.667 0.00 0.00 0.00 3.33
2310 2474 8.938906 ACAATGGATTTGTTAATTTTCTCATGC 58.061 29.630 0.00 0.00 46.51 4.06
2654 5322 1.500474 CTGGATAGGCAAGGGAGTCA 58.500 55.000 0.00 0.00 0.00 3.41
2695 5363 1.299468 CTCCTCACACGCCGATAGC 60.299 63.158 0.00 0.00 38.52 2.97
2696 5364 1.729470 CTCCTCACACGCCGATAGCT 61.729 60.000 0.00 0.00 40.39 3.32
2697 5365 1.299468 CCTCACACGCCGATAGCTC 60.299 63.158 0.00 0.00 40.39 4.09
2698 5366 1.729470 CCTCACACGCCGATAGCTCT 61.729 60.000 0.00 0.00 40.39 4.09
2699 5367 0.593518 CTCACACGCCGATAGCTCTG 60.594 60.000 0.00 0.00 40.39 3.35
2700 5368 2.105128 ACACGCCGATAGCTCTGC 59.895 61.111 0.00 0.00 40.39 4.26
2701 5369 2.415010 CACGCCGATAGCTCTGCT 59.585 61.111 0.00 0.00 43.41 4.24
2702 5370 1.227089 CACGCCGATAGCTCTGCTT 60.227 57.895 0.00 0.00 40.44 3.91
2712 5380 4.711949 CTCTGCTTGGCCGCCACT 62.712 66.667 13.00 0.00 30.78 4.00
2731 5399 6.268566 GCCACTTGAAACATATTCCTTGATC 58.731 40.000 0.00 0.00 0.00 2.92
2736 5404 7.340487 ACTTGAAACATATTCCTTGATCTTCCC 59.660 37.037 0.00 0.00 0.00 3.97
2751 5419 6.789268 TGATCTTCCCTTTGAACCTAATTCA 58.211 36.000 0.00 0.00 45.92 2.57
2766 5434 8.457238 AACCTAATTCAAGGAGCTTCAATATC 57.543 34.615 1.07 0.00 39.15 1.63
2769 5437 7.390162 CCTAATTCAAGGAGCTTCAATATCTCC 59.610 40.741 0.00 0.00 45.11 3.71
2784 5452 0.171231 TCTCCGCACAATCTGTCTCG 59.829 55.000 0.00 0.00 0.00 4.04
2806 5474 1.500474 CTGGATAGGCAAGGGAGTCA 58.500 55.000 0.00 0.00 0.00 3.41
2814 5482 0.312102 GCAAGGGAGTCAAGTGCAAC 59.688 55.000 0.00 0.00 35.28 4.17
2981 5649 4.734917 ACAAACGAACCGTCAAAATTGAA 58.265 34.783 0.00 0.00 39.99 2.69
3000 5668 1.774110 ACTTTGCAACACCACATGGA 58.226 45.000 4.53 0.00 38.94 3.41
3217 5885 1.012343 CGAACATGCCATACACGCG 60.012 57.895 3.53 3.53 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
571 580 3.733960 GCCGGGGCGAACTGTTTC 61.734 66.667 2.18 0.00 0.00 2.78
689 703 5.649602 TTTTGTGCCGACATTGAAAAATC 57.350 34.783 0.00 0.00 30.13 2.17
720 738 4.351054 CCGCACAAAGGCCTCCCT 62.351 66.667 5.23 0.00 45.77 4.20
755 773 1.599542 GACGAGGAGGCAATGCATTAC 59.400 52.381 12.53 6.33 0.00 1.89
782 800 1.143305 CTGTCTGTCTGTTTGCGGAG 58.857 55.000 0.00 0.00 0.00 4.63
784 802 0.861837 GTCTGTCTGTCTGTTTGCGG 59.138 55.000 0.00 0.00 0.00 5.69
952 970 1.748647 ATATACACGCACGCACGCAC 61.749 55.000 0.00 0.00 36.19 5.34
953 971 0.248539 TATATACACGCACGCACGCA 60.249 50.000 0.00 0.00 36.19 5.24
954 972 0.158096 GTATATACACGCACGCACGC 59.842 55.000 8.05 0.00 36.19 5.34
955 973 0.424553 CGTATATACACGCACGCACG 59.575 55.000 13.22 0.00 34.78 5.34
1086 1104 1.299926 GCCGTAGATGTGGCGTAGG 60.300 63.158 0.00 0.00 42.22 3.18
1087 1105 4.320971 GCCGTAGATGTGGCGTAG 57.679 61.111 0.00 0.00 42.22 3.51
1107 1125 2.126071 CTTGTCGGCGGTCGTCAT 60.126 61.111 7.21 0.00 36.86 3.06
1248 1269 2.758770 GAAGCGGTGCTCGTGGTGTA 62.759 60.000 0.00 0.00 38.25 2.90
1653 1734 2.358003 GCAGTTCCAGCAGCTCGT 60.358 61.111 0.00 0.00 0.00 4.18
1705 1789 2.032071 CACCCGGCGTCCTTCTTT 59.968 61.111 6.01 0.00 0.00 2.52
2219 2380 6.477688 CACTTAAACACGAGAAGAGGTAAACA 59.522 38.462 0.00 0.00 0.00 2.83
2285 2449 8.937884 TGCATGAGAAAATTAACAAATCCATTG 58.062 29.630 0.00 0.00 44.95 2.82
2286 2450 9.675464 ATGCATGAGAAAATTAACAAATCCATT 57.325 25.926 0.00 0.00 0.00 3.16
2654 5322 1.789078 CTGAAGCTGGCGTTGCACTT 61.789 55.000 0.00 0.00 0.00 3.16
2695 5363 4.711949 AGTGGCGGCCAAGCAGAG 62.712 66.667 25.70 0.00 39.27 3.35
2696 5364 4.269523 AAGTGGCGGCCAAGCAGA 62.270 61.111 25.70 0.00 39.27 4.26
2697 5365 4.047059 CAAGTGGCGGCCAAGCAG 62.047 66.667 25.70 10.38 39.27 4.24
2698 5366 4.577677 TCAAGTGGCGGCCAAGCA 62.578 61.111 25.70 5.12 39.27 3.91
2699 5367 2.855514 TTTCAAGTGGCGGCCAAGC 61.856 57.895 25.70 12.77 34.18 4.01
2700 5368 1.007387 GTTTCAAGTGGCGGCCAAG 60.007 57.895 25.70 16.62 34.18 3.61
2701 5369 1.112315 ATGTTTCAAGTGGCGGCCAA 61.112 50.000 25.70 4.88 34.18 4.52
2702 5370 0.250945 TATGTTTCAAGTGGCGGCCA 60.251 50.000 19.77 19.77 0.00 5.36
2712 5380 7.413446 AGGGAAGATCAAGGAATATGTTTCAA 58.587 34.615 0.00 0.00 0.00 2.69
2751 5419 2.435805 TGCGGAGATATTGAAGCTCCTT 59.564 45.455 7.63 0.00 44.73 3.36
2766 5434 0.171231 TCGAGACAGATTGTGCGGAG 59.829 55.000 0.00 0.00 0.00 4.63
2769 5437 0.109086 AGGTCGAGACAGATTGTGCG 60.109 55.000 5.55 0.00 0.00 5.34
2784 5452 0.761802 CTCCCTTGCCTATCCAGGTC 59.238 60.000 0.00 0.00 44.68 3.85
2806 5474 1.789078 CTGAAGCTGGCGTTGCACTT 61.789 55.000 0.00 0.00 0.00 3.16
2841 5509 0.031857 CACTGGAGGCAGAGCTATCG 59.968 60.000 0.00 0.00 0.00 2.92
2981 5649 1.774110 TCCATGTGGTGTTGCAAAGT 58.226 45.000 0.00 0.00 36.34 2.66
3000 5668 2.447047 ACAACCCAGTTGGATTCCTCTT 59.553 45.455 11.80 0.00 46.50 2.85
3217 5885 2.298446 TGCTCCTGCTCATGCTACTATC 59.702 50.000 0.00 0.00 40.48 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.