Multiple sequence alignment - TraesCS7A01G087200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G087200 chr7A 100.000 7138 0 0 1598 8735 51367677 51374814 0.000000e+00 13182.0
1 TraesCS7A01G087200 chr7A 100.000 1294 0 0 1 1294 51366080 51367373 0.000000e+00 2390.0
2 TraesCS7A01G087200 chr7A 93.980 299 18 0 5059 5357 321066403 321066105 3.720000e-123 453.0
3 TraesCS7A01G087200 chr7A 76.786 168 35 4 7014 7179 555658320 555658155 3.360000e-14 91.6
4 TraesCS7A01G087200 chr7A 100.000 45 0 0 8052 8096 51374086 51374130 5.620000e-12 84.2
5 TraesCS7A01G087200 chr7A 100.000 45 0 0 8007 8051 51374131 51374175 5.620000e-12 84.2
6 TraesCS7A01G087200 chr7A 87.037 54 4 3 812 862 509118533 509118586 3.410000e-04 58.4
7 TraesCS7A01G087200 chr7D 97.355 3478 69 13 1598 5058 48528737 48532208 0.000000e+00 5891.0
8 TraesCS7A01G087200 chr7D 95.260 2152 53 11 5383 7527 48532201 48534310 0.000000e+00 3363.0
9 TraesCS7A01G087200 chr7D 90.061 815 56 13 7523 8334 48534421 48535213 0.000000e+00 1033.0
10 TraesCS7A01G087200 chr7D 95.870 460 16 1 2 461 622500172 622500628 0.000000e+00 741.0
11 TraesCS7A01G087200 chr7D 94.431 413 20 3 884 1294 48528218 48528629 4.450000e-177 632.0
12 TraesCS7A01G087200 chr7D 90.196 459 38 6 1 456 372963653 372963199 7.550000e-165 592.0
13 TraesCS7A01G087200 chr7D 87.846 469 36 10 4 456 633923708 633923245 1.670000e-146 531.0
14 TraesCS7A01G087200 chr7D 92.171 281 16 4 8456 8735 48535628 48535903 8.220000e-105 392.0
15 TraesCS7A01G087200 chr7D 98.438 64 0 1 7989 8051 48534913 48534976 2.580000e-20 111.0
16 TraesCS7A01G087200 chr7D 95.122 41 2 0 824 864 452693720 452693680 2.040000e-06 65.8
17 TraesCS7A01G087200 chr7D 88.000 50 3 3 824 873 135944767 135944721 1.000000e-03 56.5
18 TraesCS7A01G087200 chr4A 93.777 3487 164 28 1598 5058 663277187 663280646 0.000000e+00 5188.0
19 TraesCS7A01G087200 chr4A 92.042 1709 97 21 6709 8405 663281926 663283607 0.000000e+00 2366.0
20 TraesCS7A01G087200 chr4A 92.337 1292 69 15 5383 6653 663280639 663281921 0.000000e+00 1810.0
21 TraesCS7A01G087200 chr4A 94.077 439 19 3 863 1294 663276642 663277080 0.000000e+00 660.0
22 TraesCS7A01G087200 chr4A 87.500 224 22 5 8459 8681 663283813 663284031 4.050000e-63 254.0
23 TraesCS7A01G087200 chr4A 85.776 232 31 2 451 680 687333756 687333987 2.440000e-60 244.0
24 TraesCS7A01G087200 chr4A 100.000 40 0 0 8416 8455 663283746 663283785 3.380000e-09 75.0
25 TraesCS7A01G087200 chr4A 88.889 45 4 1 6645 6688 866646 866690 4.000000e-03 54.7
26 TraesCS7A01G087200 chr3D 96.107 822 30 2 1 820 582613490 582612669 0.000000e+00 1339.0
27 TraesCS7A01G087200 chr3D 92.857 42 1 2 826 867 30275544 30275583 9.470000e-05 60.2
28 TraesCS7A01G087200 chr3D 92.500 40 3 0 823 862 582724873 582724912 3.410000e-04 58.4
29 TraesCS7A01G087200 chr3D 85.714 56 4 4 823 874 597168217 597168162 1.000000e-03 56.5
30 TraesCS7A01G087200 chr2B 95.752 824 32 3 2 822 752942420 752943243 0.000000e+00 1325.0
31 TraesCS7A01G087200 chr2B 100.000 40 0 0 6649 6688 133850111 133850150 3.380000e-09 75.0
32 TraesCS7A01G087200 chr2B 95.000 40 2 0 824 863 488046326 488046287 7.320000e-06 63.9
33 TraesCS7A01G087200 chr1D 94.946 831 32 7 1 828 54173451 54172628 0.000000e+00 1293.0
34 TraesCS7A01G087200 chr1D 92.308 39 3 0 824 862 70334081 70334043 1.000000e-03 56.5
35 TraesCS7A01G087200 chr1D 92.500 40 2 1 6634 6672 396915901 396915940 1.000000e-03 56.5
36 TraesCS7A01G087200 chr1D 88.889 45 4 1 6645 6688 84712224 84712180 4.000000e-03 54.7
37 TraesCS7A01G087200 chr7B 92.987 827 35 5 1 825 14726053 14725248 0.000000e+00 1184.0
38 TraesCS7A01G087200 chr7B 94.352 301 16 1 5058 5357 32168559 32168859 2.220000e-125 460.0
39 TraesCS7A01G087200 chr7B 93.333 285 16 3 5102 5383 524952111 524952395 1.360000e-112 418.0
40 TraesCS7A01G087200 chr7B 84.158 101 12 2 8 107 336386128 336386225 2.600000e-15 95.3
41 TraesCS7A01G087200 chr7B 83.495 103 13 2 8 108 744916848 744916748 9.340000e-15 93.5
42 TraesCS7A01G087200 chr7B 92.857 42 1 2 823 862 68554721 68554680 9.470000e-05 60.2
43 TraesCS7A01G087200 chr7B 87.500 48 6 0 6632 6679 721727597 721727644 1.000000e-03 56.5
44 TraesCS7A01G087200 chr1A 91.164 464 30 8 1 456 243618336 243618796 3.460000e-173 619.0
45 TraesCS7A01G087200 chr1A 91.111 45 2 2 824 866 77058025 77057981 9.470000e-05 60.2
46 TraesCS7A01G087200 chr5B 89.037 374 18 3 450 822 677782794 677782443 8.050000e-120 442.0
47 TraesCS7A01G087200 chr5B 91.694 301 24 1 5058 5357 232305282 232305582 4.880000e-112 416.0
48 TraesCS7A01G087200 chr5A 92.063 315 20 3 5058 5371 616025000 616024690 1.040000e-118 438.0
49 TraesCS7A01G087200 chr5A 87.202 336 16 11 5058 5371 411738326 411737996 3.000000e-94 357.0
50 TraesCS7A01G087200 chr5A 87.539 321 19 2 5058 5357 34071677 34071357 1.400000e-92 351.0
51 TraesCS7A01G087200 chr5A 86.441 177 23 1 7005 7180 401760745 401760921 8.950000e-45 193.0
52 TraesCS7A01G087200 chr3B 93.243 296 19 1 5063 5357 803622741 803622446 1.350000e-117 435.0
53 TraesCS7A01G087200 chr3B 86.290 124 15 2 7014 7136 46785836 46785958 5.500000e-27 134.0
54 TraesCS7A01G087200 chr3B 86.170 94 10 2 7 99 823097923 823098014 2.010000e-16 99.0
55 TraesCS7A01G087200 chr4B 92.359 301 19 4 5058 5357 166652818 166652521 8.110000e-115 425.0
56 TraesCS7A01G087200 chr4B 86.061 165 21 2 7007 7169 22850687 22850851 9.010000e-40 176.0
57 TraesCS7A01G087200 chr4B 91.489 47 1 2 824 869 169914333 169914377 2.630000e-05 62.1
58 TraesCS7A01G087200 chr4B 92.308 39 2 1 825 862 509016533 509016571 4.000000e-03 54.7
59 TraesCS7A01G087200 chrUn 94.245 278 15 1 5110 5386 95741152 95740875 2.920000e-114 424.0
60 TraesCS7A01G087200 chrUn 90.698 43 4 0 6639 6681 92483691 92483733 3.410000e-04 58.4
61 TraesCS7A01G087200 chr2A 91.362 301 25 1 5058 5357 520995858 520995558 2.270000e-110 411.0
62 TraesCS7A01G087200 chr2A 84.270 178 23 4 7007 7182 569586997 569587171 1.510000e-37 169.0
63 TraesCS7A01G087200 chr3A 85.263 190 26 2 6999 7186 528529304 528529493 2.490000e-45 195.0
64 TraesCS7A01G087200 chr5D 85.876 177 24 1 7005 7180 297309721 297309545 4.160000e-43 187.0
65 TraesCS7A01G087200 chr5D 95.000 40 2 0 823 862 114362318 114362279 7.320000e-06 63.9
66 TraesCS7A01G087200 chr5D 89.130 46 4 1 824 868 181886333 181886378 1.000000e-03 56.5
67 TraesCS7A01G087200 chr1B 80.435 184 28 5 7005 7180 678263512 678263695 5.500000e-27 134.0
68 TraesCS7A01G087200 chr1B 92.683 41 3 0 824 864 61650660 61650700 9.470000e-05 60.2
69 TraesCS7A01G087200 chr4D 85.000 100 13 1 725 822 20578436 20578337 5.580000e-17 100.0
70 TraesCS7A01G087200 chr4D 94.872 39 1 1 825 862 385749085 385749123 9.470000e-05 60.2
71 TraesCS7A01G087200 chr4D 89.362 47 3 2 824 870 43578021 43577977 3.410000e-04 58.4
72 TraesCS7A01G087200 chr4D 92.683 41 2 1 823 862 218121847 218121807 3.410000e-04 58.4
73 TraesCS7A01G087200 chr4D 90.909 44 3 1 823 865 272994356 272994399 3.410000e-04 58.4
74 TraesCS7A01G087200 chr6A 95.000 40 2 0 823 862 224094255 224094294 7.320000e-06 63.9
75 TraesCS7A01G087200 chr6A 91.304 46 3 1 824 868 602164187 602164232 2.630000e-05 62.1
76 TraesCS7A01G087200 chr6A 90.909 44 4 0 824 867 321278465 321278422 9.470000e-05 60.2
77 TraesCS7A01G087200 chr6A 94.595 37 2 0 6636 6672 550716839 550716803 3.410000e-04 58.4
78 TraesCS7A01G087200 chr6D 92.500 40 3 0 823 862 436077644 436077605 3.410000e-04 58.4
79 TraesCS7A01G087200 chr6D 92.500 40 1 2 828 867 10710336 10710299 1.000000e-03 56.5
80 TraesCS7A01G087200 chr6D 92.308 39 3 0 824 862 324753464 324753426 1.000000e-03 56.5
81 TraesCS7A01G087200 chr6D 100.000 29 0 0 824 852 32240448 32240420 4.000000e-03 54.7
82 TraesCS7A01G087200 chr6D 100.000 29 0 0 824 852 272799781 272799809 4.000000e-03 54.7
83 TraesCS7A01G087200 chr6D 100.000 29 0 0 824 852 272820911 272820939 4.000000e-03 54.7
84 TraesCS7A01G087200 chr6D 100.000 29 0 0 824 852 272845521 272845549 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G087200 chr7A 51366080 51374814 8734 False 3935.100000 13182 100.000000 1 8735 4 chr7A.!!$F2 8734
1 TraesCS7A01G087200 chr7D 48528218 48535903 7685 False 1903.666667 5891 94.619333 884 8735 6 chr7D.!!$F2 7851
2 TraesCS7A01G087200 chr4A 663276642 663284031 7389 False 1725.500000 5188 93.288833 863 8681 6 chr4A.!!$F3 7818
3 TraesCS7A01G087200 chr3D 582612669 582613490 821 True 1339.000000 1339 96.107000 1 820 1 chr3D.!!$R1 819
4 TraesCS7A01G087200 chr2B 752942420 752943243 823 False 1325.000000 1325 95.752000 2 822 1 chr2B.!!$F2 820
5 TraesCS7A01G087200 chr1D 54172628 54173451 823 True 1293.000000 1293 94.946000 1 828 1 chr1D.!!$R1 827
6 TraesCS7A01G087200 chr7B 14725248 14726053 805 True 1184.000000 1184 92.987000 1 825 1 chr7B.!!$R1 824

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 972 0.681243 GCCCTTCTCGCCAAAATCCT 60.681 55.000 0.00 0.0 0.00 3.24 F
1658 1669 1.140852 AGAACAGCAGTACCAGCAACA 59.859 47.619 10.16 0.0 0.00 3.33 F
2091 2114 1.337167 GCAAAATGGTTGAGGGCAGTC 60.337 52.381 0.00 0.0 0.00 3.51 F
4010 4045 1.087501 GAACACCTTTCAGCGATCCC 58.912 55.000 0.00 0.0 0.00 3.85 F
5304 5360 0.390735 CAATTCCTTGCTTGCCCTGC 60.391 55.000 0.00 0.0 0.00 4.85 F
5380 5436 0.032540 GGCACTGCCTTTTCCAACAG 59.967 55.000 13.28 0.0 46.69 3.16 F
6663 6744 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.0 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2114 3.263261 GAGGAAGCCTAAAGAGAAACCG 58.737 50.000 0.00 0.0 31.76 4.44 R
2841 2864 3.498774 ATCTTATCTCCCTTGCGCATT 57.501 42.857 12.75 0.0 0.00 3.56 R
4066 4108 1.610554 TTCCGAGGCTAAAGGGACCG 61.611 60.000 0.00 0.0 0.00 4.79 R
5341 5397 0.106708 TAGAAGGCGCTAGGCAATGG 59.893 55.000 7.64 0.0 46.16 3.16 R
7019 7105 1.201987 CGCACAATTAACACCTACCGC 60.202 52.381 0.00 0.0 0.00 5.68 R
7020 7106 2.070783 ACGCACAATTAACACCTACCG 58.929 47.619 0.00 0.0 0.00 4.02 R
8178 8441 0.234884 AGTACGAAACAAGCAAGCGC 59.765 50.000 0.00 0.0 38.99 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.230508 AGAGCTTCACGGTCGATTGTAA 59.769 45.455 0.00 0.00 44.71 2.41
105 108 3.056328 GCAACCAACCGAGGGCTC 61.056 66.667 0.00 0.00 0.00 4.70
163 166 5.106118 TGGTCACGAAACAAAAACATCTCAA 60.106 36.000 0.00 0.00 0.00 3.02
193 196 5.235616 CAGCAAAAGAACTTACGGTTGTAGA 59.764 40.000 0.00 0.00 38.41 2.59
235 239 2.702592 AAAACGACTGGTTCACCTCA 57.297 45.000 0.00 0.00 38.08 3.86
500 504 4.457496 CGCAGGCCATGACCTCGT 62.457 66.667 5.01 0.00 38.26 4.18
590 595 1.992277 CAGAGGGCAGGTAGGTGCT 60.992 63.158 0.00 0.00 43.45 4.40
635 640 3.581755 CGACCGGTGAGAAGTTATTTGA 58.418 45.455 14.63 0.00 0.00 2.69
693 698 3.055602 GGGAATAGTTAGTGGTGGAACGT 60.056 47.826 0.00 0.00 38.12 3.99
714 719 2.828661 TGGCTAGAACTCTAGGAGCA 57.171 50.000 14.19 0.00 44.63 4.26
747 752 4.669318 CAGGATAACGAAGAGTAAAGCGA 58.331 43.478 0.00 0.00 0.00 4.93
822 827 1.456923 GACCGGTTCTAAACGTTTCCG 59.543 52.381 24.30 24.30 40.83 4.30
838 843 6.770063 CGTTTCCGTTTTAATAAAGCTAGC 57.230 37.500 6.62 6.62 0.00 3.42
839 844 5.735892 CGTTTCCGTTTTAATAAAGCTAGCC 59.264 40.000 12.13 0.00 0.00 3.93
840 845 6.614160 GTTTCCGTTTTAATAAAGCTAGCCA 58.386 36.000 12.13 0.00 0.00 4.75
841 846 7.255569 GTTTCCGTTTTAATAAAGCTAGCCAT 58.744 34.615 12.13 2.74 0.00 4.40
842 847 6.371809 TCCGTTTTAATAAAGCTAGCCATG 57.628 37.500 12.13 0.00 0.00 3.66
843 848 6.116806 TCCGTTTTAATAAAGCTAGCCATGA 58.883 36.000 12.13 0.00 0.00 3.07
844 849 6.770785 TCCGTTTTAATAAAGCTAGCCATGAT 59.229 34.615 12.13 0.00 0.00 2.45
845 850 6.857964 CCGTTTTAATAAAGCTAGCCATGATG 59.142 38.462 12.13 0.00 0.00 3.07
846 851 6.857964 CGTTTTAATAAAGCTAGCCATGATGG 59.142 38.462 12.13 7.21 41.55 3.51
860 865 5.920193 CCATGATGGCCTTTTCTAGAAAA 57.080 39.130 25.24 25.24 37.90 2.29
861 866 6.284891 CCATGATGGCCTTTTCTAGAAAAA 57.715 37.500 26.37 15.17 39.49 1.94
862 867 6.101997 CCATGATGGCCTTTTCTAGAAAAAC 58.898 40.000 26.37 21.21 39.49 2.43
863 868 6.295236 CCATGATGGCCTTTTCTAGAAAAACA 60.295 38.462 26.37 23.76 39.49 2.83
864 869 6.723298 TGATGGCCTTTTCTAGAAAAACAA 57.277 33.333 26.37 17.44 39.49 2.83
865 870 7.118496 TGATGGCCTTTTCTAGAAAAACAAA 57.882 32.000 26.37 15.50 39.49 2.83
866 871 7.734942 TGATGGCCTTTTCTAGAAAAACAAAT 58.265 30.769 26.37 18.60 39.49 2.32
876 881 6.872920 TCTAGAAAAACAAATGCAAACTGGT 58.127 32.000 0.00 0.00 0.00 4.00
892 897 3.046374 ACTGGTCCACCTTTACAGTCTT 58.954 45.455 0.00 0.00 37.86 3.01
935 940 3.322466 CCGCTTCCACCCACTCCT 61.322 66.667 0.00 0.00 0.00 3.69
937 942 2.266055 GCTTCCACCCACTCCTCG 59.734 66.667 0.00 0.00 0.00 4.63
938 943 2.982130 CTTCCACCCACTCCTCGG 59.018 66.667 0.00 0.00 0.00 4.63
939 944 1.913762 CTTCCACCCACTCCTCGGT 60.914 63.158 0.00 0.00 0.00 4.69
962 972 0.681243 GCCCTTCTCGCCAAAATCCT 60.681 55.000 0.00 0.00 0.00 3.24
1281 1292 1.831286 CATCCAGAAGGGCCATGGC 60.831 63.158 29.47 29.47 41.06 4.40
1643 1654 5.456548 TGAAGTTCGTACATGGTAGAACA 57.543 39.130 22.36 7.61 43.71 3.18
1658 1669 1.140852 AGAACAGCAGTACCAGCAACA 59.859 47.619 10.16 0.00 0.00 3.33
1662 1673 1.466167 CAGCAGTACCAGCAACATCAC 59.534 52.381 10.16 0.00 0.00 3.06
1712 1723 6.176975 TCAAGTGTTAATAAATGCGTCAGG 57.823 37.500 0.00 0.00 0.00 3.86
1728 1748 4.181578 CGTCAGGGATAACAACCTTACAG 58.818 47.826 0.00 0.00 34.05 2.74
2091 2114 1.337167 GCAAAATGGTTGAGGGCAGTC 60.337 52.381 0.00 0.00 0.00 3.51
2245 2268 4.111577 TCCTGAGGTTGATAAATCCCTGT 58.888 43.478 0.00 0.00 0.00 4.00
2287 2310 6.339730 TCAGCCCTTTATTGCAACATTTATG 58.660 36.000 0.00 0.00 0.00 1.90
2374 2397 7.230510 TGTTCTACAAGCATACAGTGGAAAATT 59.769 33.333 0.00 0.00 35.11 1.82
2841 2864 2.889678 TGTTGCTATTGTTGATGGTGCA 59.110 40.909 0.00 0.00 0.00 4.57
3082 3105 3.950395 CCAGACCCTCCTGAAATCATTTC 59.050 47.826 2.87 2.87 40.08 2.17
3088 3112 6.973642 ACCCTCCTGAAATCATTTCTATCAA 58.026 36.000 11.46 0.00 40.32 2.57
3446 3472 2.821969 AGTGTCCAAACATGCCTCAATC 59.178 45.455 0.00 0.00 37.81 2.67
3557 3583 6.237313 ACGGCTTGAACAAGTATAGTTTTC 57.763 37.500 14.62 0.38 40.45 2.29
3656 3682 9.449719 ACAGCTTTGCACTTAATTAATACTACT 57.550 29.630 0.00 0.00 0.00 2.57
3685 3711 3.954904 TCTTTCGAACACCAAAAATGGGA 59.045 39.130 0.00 0.00 0.00 4.37
3830 3865 8.891671 TGTTACTAAACCTGTTTACCTACTTG 57.108 34.615 0.00 0.00 34.49 3.16
3923 3958 6.648879 TTGGATATAATACCAGCCAAAAGC 57.351 37.500 0.00 0.00 44.25 3.51
4008 4043 2.417719 AGTGAACACCTTTCAGCGATC 58.582 47.619 1.11 0.00 0.00 3.69
4010 4045 1.087501 GAACACCTTTCAGCGATCCC 58.912 55.000 0.00 0.00 0.00 3.85
4206 4248 4.402155 TGTCACAATTCAATAATGGAGCCC 59.598 41.667 0.00 0.00 0.00 5.19
4323 4365 4.510571 TGAAACTATTTCTACGGGAAGCC 58.489 43.478 3.19 0.00 40.32 4.35
4327 4369 2.240493 ATTTCTACGGGAAGCCATCG 57.760 50.000 0.00 0.00 35.16 3.84
4769 4821 6.531240 ACATTCATTGATGCGTAATTGTTTCC 59.469 34.615 0.00 0.00 0.00 3.13
5036 5091 9.616634 TCATTTTTCGAGATTTTGAGATGAAAG 57.383 29.630 0.00 0.00 0.00 2.62
5046 5102 8.896744 AGATTTTGAGATGAAAGCGAATATGAA 58.103 29.630 0.00 0.00 0.00 2.57
5047 5103 9.674824 GATTTTGAGATGAAAGCGAATATGAAT 57.325 29.630 0.00 0.00 0.00 2.57
5051 5107 8.260270 TGAGATGAAAGCGAATATGAATATGG 57.740 34.615 0.00 0.00 0.00 2.74
5052 5108 7.879677 TGAGATGAAAGCGAATATGAATATGGT 59.120 33.333 0.00 0.00 0.00 3.55
5053 5109 8.627208 AGATGAAAGCGAATATGAATATGGTT 57.373 30.769 0.00 0.00 0.00 3.67
5054 5110 8.509690 AGATGAAAGCGAATATGAATATGGTTG 58.490 33.333 0.00 0.00 0.00 3.77
5055 5111 7.566760 TGAAAGCGAATATGAATATGGTTGT 57.433 32.000 0.00 0.00 0.00 3.32
5056 5112 8.669946 TGAAAGCGAATATGAATATGGTTGTA 57.330 30.769 0.00 0.00 0.00 2.41
5057 5113 9.114952 TGAAAGCGAATATGAATATGGTTGTAA 57.885 29.630 0.00 0.00 0.00 2.41
5058 5114 9.944663 GAAAGCGAATATGAATATGGTTGTAAA 57.055 29.630 0.00 0.00 0.00 2.01
5059 5115 9.950680 AAAGCGAATATGAATATGGTTGTAAAG 57.049 29.630 0.00 0.00 0.00 1.85
5060 5116 8.099364 AGCGAATATGAATATGGTTGTAAAGG 57.901 34.615 0.00 0.00 0.00 3.11
5061 5117 7.936847 AGCGAATATGAATATGGTTGTAAAGGA 59.063 33.333 0.00 0.00 0.00 3.36
5062 5118 8.730680 GCGAATATGAATATGGTTGTAAAGGAT 58.269 33.333 0.00 0.00 0.00 3.24
5067 5123 8.837099 ATGAATATGGTTGTAAAGGATGGAAA 57.163 30.769 0.00 0.00 0.00 3.13
5068 5124 8.657387 TGAATATGGTTGTAAAGGATGGAAAA 57.343 30.769 0.00 0.00 0.00 2.29
5069 5125 9.094578 TGAATATGGTTGTAAAGGATGGAAAAA 57.905 29.630 0.00 0.00 0.00 1.94
5070 5126 9.586435 GAATATGGTTGTAAAGGATGGAAAAAG 57.414 33.333 0.00 0.00 0.00 2.27
5071 5127 5.208463 TGGTTGTAAAGGATGGAAAAAGC 57.792 39.130 0.00 0.00 0.00 3.51
5072 5128 4.234574 GGTTGTAAAGGATGGAAAAAGCG 58.765 43.478 0.00 0.00 0.00 4.68
5073 5129 4.234574 GTTGTAAAGGATGGAAAAAGCGG 58.765 43.478 0.00 0.00 0.00 5.52
5074 5130 3.492337 TGTAAAGGATGGAAAAAGCGGT 58.508 40.909 0.00 0.00 0.00 5.68
5075 5131 4.653868 TGTAAAGGATGGAAAAAGCGGTA 58.346 39.130 0.00 0.00 0.00 4.02
5076 5132 4.698304 TGTAAAGGATGGAAAAAGCGGTAG 59.302 41.667 0.00 0.00 0.00 3.18
5077 5133 2.420058 AGGATGGAAAAAGCGGTAGG 57.580 50.000 0.00 0.00 0.00 3.18
5078 5134 1.913419 AGGATGGAAAAAGCGGTAGGA 59.087 47.619 0.00 0.00 0.00 2.94
5079 5135 2.092914 AGGATGGAAAAAGCGGTAGGAG 60.093 50.000 0.00 0.00 0.00 3.69
5080 5136 2.355818 GGATGGAAAAAGCGGTAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
5081 5137 3.118519 GGATGGAAAAAGCGGTAGGAGTA 60.119 47.826 0.00 0.00 0.00 2.59
5082 5138 4.510571 GATGGAAAAAGCGGTAGGAGTAA 58.489 43.478 0.00 0.00 0.00 2.24
5083 5139 3.934068 TGGAAAAAGCGGTAGGAGTAAG 58.066 45.455 0.00 0.00 0.00 2.34
5084 5140 2.676839 GGAAAAAGCGGTAGGAGTAAGC 59.323 50.000 0.00 0.00 0.00 3.09
5085 5141 2.005971 AAAAGCGGTAGGAGTAAGCG 57.994 50.000 0.00 0.00 40.62 4.68
5086 5142 1.180029 AAAGCGGTAGGAGTAAGCGA 58.820 50.000 0.00 0.00 40.11 4.93
5087 5143 0.739561 AAGCGGTAGGAGTAAGCGAG 59.260 55.000 0.00 0.00 40.11 5.03
5088 5144 1.102222 AGCGGTAGGAGTAAGCGAGG 61.102 60.000 0.00 0.00 40.11 4.63
5089 5145 1.359475 CGGTAGGAGTAAGCGAGGC 59.641 63.158 0.00 0.00 40.11 4.70
5090 5146 1.359475 GGTAGGAGTAAGCGAGGCG 59.641 63.158 0.00 0.00 0.00 5.52
5091 5147 1.359475 GTAGGAGTAAGCGAGGCGG 59.641 63.158 0.00 0.00 0.00 6.13
5092 5148 1.077212 TAGGAGTAAGCGAGGCGGT 60.077 57.895 0.00 0.00 40.00 5.68
5094 5150 1.810030 GGAGTAAGCGAGGCGGTTG 60.810 63.158 13.64 0.00 46.80 3.77
5095 5151 1.810030 GAGTAAGCGAGGCGGTTGG 60.810 63.158 13.64 0.00 46.80 3.77
5096 5152 3.497031 GTAAGCGAGGCGGTTGGC 61.497 66.667 13.64 4.02 46.80 4.52
5112 5168 3.217231 GCCTTCGCCTAGTGCCTA 58.783 61.111 0.00 0.00 36.24 3.93
5113 5169 1.068250 GCCTTCGCCTAGTGCCTAG 59.932 63.158 3.06 3.06 36.24 3.02
5139 5195 4.548451 GGCCTAGGCGGTAATATAGTTT 57.452 45.455 27.24 0.00 43.06 2.66
5140 5196 4.502016 GGCCTAGGCGGTAATATAGTTTC 58.498 47.826 27.24 4.39 43.06 2.78
5141 5197 4.222366 GGCCTAGGCGGTAATATAGTTTCT 59.778 45.833 27.24 0.00 43.06 2.52
5142 5198 5.420104 GGCCTAGGCGGTAATATAGTTTCTA 59.580 44.000 27.24 0.00 43.06 2.10
5143 5199 6.328714 GCCTAGGCGGTAATATAGTTTCTAC 58.671 44.000 20.16 0.00 34.25 2.59
5144 5200 6.152492 GCCTAGGCGGTAATATAGTTTCTACT 59.848 42.308 20.16 0.00 35.13 2.57
5145 5201 7.628153 GCCTAGGCGGTAATATAGTTTCTACTC 60.628 44.444 20.16 0.00 33.62 2.59
5146 5202 6.251655 AGGCGGTAATATAGTTTCTACTCG 57.748 41.667 0.00 0.00 35.78 4.18
5147 5203 5.767168 AGGCGGTAATATAGTTTCTACTCGT 59.233 40.000 0.00 0.00 35.78 4.18
5148 5204 6.936900 AGGCGGTAATATAGTTTCTACTCGTA 59.063 38.462 0.00 0.00 35.78 3.43
5149 5205 7.118971 AGGCGGTAATATAGTTTCTACTCGTAG 59.881 40.741 0.00 0.00 35.78 3.51
5150 5206 7.095017 GGCGGTAATATAGTTTCTACTCGTAGT 60.095 40.741 4.19 0.00 35.78 2.73
5151 5207 7.743838 GCGGTAATATAGTTTCTACTCGTAGTG 59.256 40.741 4.19 0.00 35.78 2.74
5152 5208 8.768955 CGGTAATATAGTTTCTACTCGTAGTGT 58.231 37.037 4.19 0.00 35.78 3.55
5159 5215 9.784680 ATAGTTTCTACTCGTAGTGTATTTGTG 57.215 33.333 4.19 0.00 35.87 3.33
5160 5216 7.879070 AGTTTCTACTCGTAGTGTATTTGTGA 58.121 34.615 4.19 0.00 35.87 3.58
5161 5217 8.521176 AGTTTCTACTCGTAGTGTATTTGTGAT 58.479 33.333 4.19 0.00 35.87 3.06
5162 5218 9.136952 GTTTCTACTCGTAGTGTATTTGTGATT 57.863 33.333 4.19 0.00 35.87 2.57
5164 5220 9.778993 TTCTACTCGTAGTGTATTTGTGATTAC 57.221 33.333 4.19 0.00 35.87 1.89
5165 5221 9.170734 TCTACTCGTAGTGTATTTGTGATTACT 57.829 33.333 4.19 0.00 35.87 2.24
5174 5230 9.778741 AGTGTATTTGTGATTACTATATGGGTG 57.221 33.333 0.00 0.00 0.00 4.61
5175 5231 9.555727 GTGTATTTGTGATTACTATATGGGTGT 57.444 33.333 0.00 0.00 0.00 4.16
5179 5235 9.866655 ATTTGTGATTACTATATGGGTGTTGAT 57.133 29.630 0.00 0.00 0.00 2.57
5192 5248 6.969993 TGGGTGTTGATATTATTTTAGGGC 57.030 37.500 0.00 0.00 0.00 5.19
5193 5249 6.436027 TGGGTGTTGATATTATTTTAGGGCA 58.564 36.000 0.00 0.00 0.00 5.36
5194 5250 7.072562 TGGGTGTTGATATTATTTTAGGGCAT 58.927 34.615 0.00 0.00 0.00 4.40
5195 5251 8.228206 TGGGTGTTGATATTATTTTAGGGCATA 58.772 33.333 0.00 0.00 0.00 3.14
5196 5252 9.255029 GGGTGTTGATATTATTTTAGGGCATAT 57.745 33.333 0.00 0.00 0.00 1.78
5223 5279 9.609346 AAATAAGTTAATTACCGTCTACTGCAT 57.391 29.630 0.00 0.00 0.00 3.96
5224 5280 9.609346 AATAAGTTAATTACCGTCTACTGCATT 57.391 29.630 0.00 0.00 0.00 3.56
5225 5281 6.903883 AGTTAATTACCGTCTACTGCATTG 57.096 37.500 0.00 0.00 0.00 2.82
5226 5282 5.815740 AGTTAATTACCGTCTACTGCATTGG 59.184 40.000 0.00 0.00 0.00 3.16
5227 5283 4.481368 AATTACCGTCTACTGCATTGGA 57.519 40.909 0.00 0.00 0.00 3.53
5228 5284 3.965379 TTACCGTCTACTGCATTGGAA 57.035 42.857 0.00 0.00 0.00 3.53
5229 5285 4.481368 TTACCGTCTACTGCATTGGAAT 57.519 40.909 0.00 0.00 0.00 3.01
5230 5286 5.601583 TTACCGTCTACTGCATTGGAATA 57.398 39.130 0.00 0.00 0.00 1.75
5231 5287 4.689612 ACCGTCTACTGCATTGGAATAT 57.310 40.909 0.00 0.00 0.00 1.28
5232 5288 5.801531 ACCGTCTACTGCATTGGAATATA 57.198 39.130 0.00 0.00 0.00 0.86
5233 5289 6.169557 ACCGTCTACTGCATTGGAATATAA 57.830 37.500 0.00 0.00 0.00 0.98
5234 5290 5.989777 ACCGTCTACTGCATTGGAATATAAC 59.010 40.000 0.00 0.00 0.00 1.89
5235 5291 5.118664 CCGTCTACTGCATTGGAATATAACG 59.881 44.000 0.00 0.00 0.00 3.18
5236 5292 5.690409 CGTCTACTGCATTGGAATATAACGT 59.310 40.000 0.00 0.00 0.00 3.99
5237 5293 6.345803 CGTCTACTGCATTGGAATATAACGTG 60.346 42.308 0.00 0.00 0.00 4.49
5238 5294 6.479001 GTCTACTGCATTGGAATATAACGTGT 59.521 38.462 0.00 0.00 0.00 4.49
5239 5295 7.011109 GTCTACTGCATTGGAATATAACGTGTT 59.989 37.037 0.00 0.00 0.00 3.32
5240 5296 6.509418 ACTGCATTGGAATATAACGTGTTT 57.491 33.333 0.00 0.00 0.00 2.83
5241 5297 6.321717 ACTGCATTGGAATATAACGTGTTTG 58.678 36.000 0.00 0.00 0.00 2.93
5242 5298 5.645624 TGCATTGGAATATAACGTGTTTGG 58.354 37.500 0.00 0.00 0.00 3.28
5243 5299 4.502645 GCATTGGAATATAACGTGTTTGGC 59.497 41.667 0.00 0.00 0.00 4.52
5244 5300 5.645624 CATTGGAATATAACGTGTTTGGCA 58.354 37.500 0.00 0.00 0.00 4.92
5245 5301 5.906113 TTGGAATATAACGTGTTTGGCAT 57.094 34.783 0.00 0.00 0.00 4.40
5246 5302 7.421599 CATTGGAATATAACGTGTTTGGCATA 58.578 34.615 0.00 0.00 0.00 3.14
5247 5303 7.575414 TTGGAATATAACGTGTTTGGCATAT 57.425 32.000 0.00 0.00 0.00 1.78
5248 5304 7.197071 TGGAATATAACGTGTTTGGCATATC 57.803 36.000 0.00 0.00 0.00 1.63
5249 5305 6.768381 TGGAATATAACGTGTTTGGCATATCA 59.232 34.615 0.00 0.00 0.00 2.15
5250 5306 7.041440 TGGAATATAACGTGTTTGGCATATCAG 60.041 37.037 0.00 0.00 0.00 2.90
5251 5307 7.041372 GGAATATAACGTGTTTGGCATATCAGT 60.041 37.037 0.00 0.00 0.00 3.41
5252 5308 3.829886 AACGTGTTTGGCATATCAGTG 57.170 42.857 0.00 0.00 0.00 3.66
5253 5309 2.083774 ACGTGTTTGGCATATCAGTGG 58.916 47.619 0.00 0.00 0.00 4.00
5254 5310 2.290008 ACGTGTTTGGCATATCAGTGGA 60.290 45.455 0.00 0.00 0.00 4.02
5255 5311 2.352651 CGTGTTTGGCATATCAGTGGAG 59.647 50.000 0.00 0.00 0.00 3.86
5256 5312 3.347216 GTGTTTGGCATATCAGTGGAGT 58.653 45.455 0.00 0.00 0.00 3.85
5257 5313 4.513442 GTGTTTGGCATATCAGTGGAGTA 58.487 43.478 0.00 0.00 0.00 2.59
5258 5314 5.126067 GTGTTTGGCATATCAGTGGAGTAT 58.874 41.667 0.00 0.00 0.00 2.12
5259 5315 5.008019 GTGTTTGGCATATCAGTGGAGTATG 59.992 44.000 0.00 0.00 0.00 2.39
5260 5316 5.126067 GTTTGGCATATCAGTGGAGTATGT 58.874 41.667 0.00 0.00 0.00 2.29
5261 5317 4.341366 TGGCATATCAGTGGAGTATGTG 57.659 45.455 10.61 0.00 0.00 3.21
5262 5318 3.071457 TGGCATATCAGTGGAGTATGTGG 59.929 47.826 10.61 0.00 0.00 4.17
5263 5319 3.070018 GCATATCAGTGGAGTATGTGGC 58.930 50.000 10.61 0.00 0.00 5.01
5264 5320 3.494924 GCATATCAGTGGAGTATGTGGCA 60.495 47.826 10.61 0.00 0.00 4.92
5265 5321 4.805272 GCATATCAGTGGAGTATGTGGCAT 60.805 45.833 0.00 0.00 0.00 4.40
5266 5322 2.696989 TCAGTGGAGTATGTGGCATG 57.303 50.000 0.00 0.00 0.00 4.06
5267 5323 2.187100 TCAGTGGAGTATGTGGCATGA 58.813 47.619 0.00 0.00 0.00 3.07
5268 5324 2.773661 TCAGTGGAGTATGTGGCATGAT 59.226 45.455 0.00 0.00 0.00 2.45
5269 5325 3.200605 TCAGTGGAGTATGTGGCATGATT 59.799 43.478 0.00 0.00 0.00 2.57
5270 5326 3.949754 CAGTGGAGTATGTGGCATGATTT 59.050 43.478 0.00 0.00 0.00 2.17
5271 5327 4.036027 CAGTGGAGTATGTGGCATGATTTC 59.964 45.833 0.00 0.00 0.00 2.17
5272 5328 4.080129 AGTGGAGTATGTGGCATGATTTCT 60.080 41.667 0.00 0.00 0.00 2.52
5273 5329 4.641989 GTGGAGTATGTGGCATGATTTCTT 59.358 41.667 0.00 0.00 0.00 2.52
5274 5330 4.641541 TGGAGTATGTGGCATGATTTCTTG 59.358 41.667 0.00 0.00 0.00 3.02
5275 5331 4.498682 GGAGTATGTGGCATGATTTCTTGC 60.499 45.833 9.32 9.32 43.68 4.01
5276 5332 4.275810 AGTATGTGGCATGATTTCTTGCT 58.724 39.130 15.41 2.13 43.82 3.91
5277 5333 4.708421 AGTATGTGGCATGATTTCTTGCTT 59.292 37.500 15.41 4.60 43.82 3.91
5278 5334 3.306917 TGTGGCATGATTTCTTGCTTG 57.693 42.857 15.41 0.00 43.82 4.01
5279 5335 2.028839 TGTGGCATGATTTCTTGCTTGG 60.029 45.455 15.41 0.00 43.82 3.61
5280 5336 1.551430 TGGCATGATTTCTTGCTTGGG 59.449 47.619 15.41 0.00 43.82 4.12
5281 5337 1.551883 GGCATGATTTCTTGCTTGGGT 59.448 47.619 15.41 0.00 43.82 4.51
5282 5338 2.760092 GGCATGATTTCTTGCTTGGGTA 59.240 45.455 15.41 0.00 43.82 3.69
5283 5339 3.181483 GGCATGATTTCTTGCTTGGGTAG 60.181 47.826 15.41 0.00 43.82 3.18
5284 5340 3.181483 GCATGATTTCTTGCTTGGGTAGG 60.181 47.826 10.28 0.00 41.90 3.18
5285 5341 2.446435 TGATTTCTTGCTTGGGTAGGC 58.554 47.619 0.00 0.00 0.00 3.93
5286 5342 2.224992 TGATTTCTTGCTTGGGTAGGCA 60.225 45.455 0.00 0.00 36.62 4.75
5287 5343 2.373335 TTTCTTGCTTGGGTAGGCAA 57.627 45.000 0.00 0.00 44.64 4.52
5288 5344 2.603075 TTCTTGCTTGGGTAGGCAAT 57.397 45.000 0.00 0.00 45.47 3.56
5289 5345 2.603075 TCTTGCTTGGGTAGGCAATT 57.397 45.000 0.00 0.00 45.47 2.32
5290 5346 2.446435 TCTTGCTTGGGTAGGCAATTC 58.554 47.619 0.00 0.00 45.47 2.17
5291 5347 1.478105 CTTGCTTGGGTAGGCAATTCC 59.522 52.381 0.00 0.00 45.47 3.01
5293 5349 1.077005 TGCTTGGGTAGGCAATTCCTT 59.923 47.619 2.37 0.00 44.75 3.36
5294 5350 1.478105 GCTTGGGTAGGCAATTCCTTG 59.522 52.381 2.37 0.00 44.75 3.61
5303 5359 3.826637 CAATTCCTTGCTTGCCCTG 57.173 52.632 0.00 0.00 0.00 4.45
5304 5360 0.390735 CAATTCCTTGCTTGCCCTGC 60.391 55.000 0.00 0.00 0.00 4.85
5305 5361 1.547472 AATTCCTTGCTTGCCCTGCC 61.547 55.000 0.00 0.00 0.00 4.85
5306 5362 2.451462 ATTCCTTGCTTGCCCTGCCT 62.451 55.000 0.00 0.00 0.00 4.75
5307 5363 1.788518 TTCCTTGCTTGCCCTGCCTA 61.789 55.000 0.00 0.00 0.00 3.93
5308 5364 1.751927 CCTTGCTTGCCCTGCCTAG 60.752 63.158 0.00 0.00 0.00 3.02
5309 5365 1.300963 CTTGCTTGCCCTGCCTAGA 59.699 57.895 0.00 0.00 0.00 2.43
5310 5366 1.002134 TTGCTTGCCCTGCCTAGAC 60.002 57.895 0.00 0.00 0.00 2.59
5311 5367 2.124529 GCTTGCCCTGCCTAGACC 60.125 66.667 0.00 0.00 0.00 3.85
5312 5368 2.674220 GCTTGCCCTGCCTAGACCT 61.674 63.158 0.00 0.00 0.00 3.85
5313 5369 1.524482 CTTGCCCTGCCTAGACCTC 59.476 63.158 0.00 0.00 0.00 3.85
5314 5370 1.977293 CTTGCCCTGCCTAGACCTCC 61.977 65.000 0.00 0.00 0.00 4.30
5315 5371 2.365635 GCCCTGCCTAGACCTCCA 60.366 66.667 0.00 0.00 0.00 3.86
5316 5372 1.768077 GCCCTGCCTAGACCTCCAT 60.768 63.158 0.00 0.00 0.00 3.41
5317 5373 1.348775 GCCCTGCCTAGACCTCCATT 61.349 60.000 0.00 0.00 0.00 3.16
5318 5374 1.216990 CCCTGCCTAGACCTCCATTT 58.783 55.000 0.00 0.00 0.00 2.32
5319 5375 2.408565 CCCTGCCTAGACCTCCATTTA 58.591 52.381 0.00 0.00 0.00 1.40
5320 5376 2.982488 CCCTGCCTAGACCTCCATTTAT 59.018 50.000 0.00 0.00 0.00 1.40
5321 5377 3.244700 CCCTGCCTAGACCTCCATTTATG 60.245 52.174 0.00 0.00 0.00 1.90
5322 5378 3.406764 CTGCCTAGACCTCCATTTATGC 58.593 50.000 0.00 0.00 0.00 3.14
5323 5379 2.106511 TGCCTAGACCTCCATTTATGCC 59.893 50.000 0.00 0.00 0.00 4.40
5324 5380 2.553247 GCCTAGACCTCCATTTATGCCC 60.553 54.545 0.00 0.00 0.00 5.36
5325 5381 2.982488 CCTAGACCTCCATTTATGCCCT 59.018 50.000 0.00 0.00 0.00 5.19
5326 5382 4.168101 CCTAGACCTCCATTTATGCCCTA 58.832 47.826 0.00 0.00 0.00 3.53
5327 5383 4.223923 CCTAGACCTCCATTTATGCCCTAG 59.776 50.000 0.00 0.00 0.00 3.02
5328 5384 2.982488 AGACCTCCATTTATGCCCTAGG 59.018 50.000 0.06 0.06 0.00 3.02
5329 5385 2.711547 GACCTCCATTTATGCCCTAGGT 59.288 50.000 8.29 0.00 38.55 3.08
5330 5386 2.443255 ACCTCCATTTATGCCCTAGGTG 59.557 50.000 8.29 0.05 34.64 4.00
5331 5387 2.711009 CCTCCATTTATGCCCTAGGTGA 59.289 50.000 8.29 0.00 0.00 4.02
5332 5388 3.244700 CCTCCATTTATGCCCTAGGTGAG 60.245 52.174 8.29 0.00 0.00 3.51
5333 5389 2.711009 TCCATTTATGCCCTAGGTGAGG 59.289 50.000 8.29 0.00 46.25 3.86
5338 5394 2.669240 GCCCTAGGTGAGGCGTTT 59.331 61.111 8.29 0.00 45.17 3.60
5339 5395 1.745489 GCCCTAGGTGAGGCGTTTG 60.745 63.158 8.29 0.00 45.17 2.93
5340 5396 1.078426 CCCTAGGTGAGGCGTTTGG 60.078 63.158 8.29 0.00 45.17 3.28
5341 5397 1.745489 CCTAGGTGAGGCGTTTGGC 60.745 63.158 0.00 0.00 38.96 4.52
5357 5413 2.830370 GCCATTGCCTAGCGCCTT 60.830 61.111 2.29 0.00 36.24 4.35
5358 5414 2.838974 GCCATTGCCTAGCGCCTTC 61.839 63.158 2.29 0.00 36.24 3.46
5359 5415 1.153086 CCATTGCCTAGCGCCTTCT 60.153 57.895 2.29 0.00 36.24 2.85
5360 5416 0.106708 CCATTGCCTAGCGCCTTCTA 59.893 55.000 2.29 0.00 36.24 2.10
5361 5417 1.506493 CATTGCCTAGCGCCTTCTAG 58.494 55.000 2.29 0.00 36.63 2.43
5379 5435 2.123409 GGCACTGCCTTTTCCAACA 58.877 52.632 13.28 0.00 46.69 3.33
5380 5436 0.032540 GGCACTGCCTTTTCCAACAG 59.967 55.000 13.28 0.00 46.69 3.16
5381 5437 1.032014 GCACTGCCTTTTCCAACAGA 58.968 50.000 0.00 0.00 34.25 3.41
5504 5560 6.702449 TTATGAATATGACCCCTAGTGCAT 57.298 37.500 0.00 0.00 0.00 3.96
5531 5587 6.102910 TCTCTAATCCAGCCTACTAAGTACCT 59.897 42.308 0.00 0.00 0.00 3.08
5733 5798 9.217278 CACATAGGAATTTCTTCTATGATGGAG 57.783 37.037 20.44 8.25 32.58 3.86
5995 6066 5.939883 TGGGACTCTGATGTGTAAAATGAAG 59.060 40.000 0.00 0.00 0.00 3.02
6150 6221 9.023967 CAATAATTAGCTAAAGCAATCAACCAC 57.976 33.333 10.85 0.00 45.16 4.16
6261 6339 7.763172 AAAATCGTTGCAGTGTGAAAATTTA 57.237 28.000 0.00 0.00 0.00 1.40
6329 6408 6.094048 GCCAGTGCTCTTTGATTAGATTGTTA 59.906 38.462 0.00 0.00 33.53 2.41
6413 6493 5.702349 AAGAGGATTGTGAAGCAGAAAAG 57.298 39.130 0.00 0.00 0.00 2.27
6433 6513 2.844348 AGAGTGGATTTCGGTATTGGGT 59.156 45.455 0.00 0.00 0.00 4.51
6443 6524 3.958018 TCGGTATTGGGTAAAATGCTGT 58.042 40.909 0.00 0.00 32.27 4.40
6663 6744 1.002069 TACTACTCCCTCCGTTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
6686 6767 8.179615 CCCAAATATAAGACGTTTTGGTAGTTC 58.820 37.037 20.25 0.00 44.21 3.01
6706 6787 4.552883 TCAGGAATGGAGGGAGTACATA 57.447 45.455 0.00 0.00 0.00 2.29
6754 6835 6.698766 AGATTTGTGTTCATTTGAAGTGCTTC 59.301 34.615 5.07 5.07 39.91 3.86
7072 7159 3.620488 TCTTGTGCTTTCTGACCAAAGT 58.380 40.909 0.00 0.00 36.00 2.66
7137 7224 1.202891 TGCTATCGCCTAGAGCCTACA 60.203 52.381 0.00 0.00 41.98 2.74
7363 7478 2.188817 AGGTCCAGGTAGCTTGTTAGG 58.811 52.381 0.00 0.00 0.00 2.69
7364 7479 2.185387 GGTCCAGGTAGCTTGTTAGGA 58.815 52.381 0.00 0.00 0.00 2.94
7365 7480 2.093606 GGTCCAGGTAGCTTGTTAGGAC 60.094 54.545 16.29 16.29 42.44 3.85
7366 7481 2.832733 GTCCAGGTAGCTTGTTAGGACT 59.167 50.000 16.97 0.00 40.57 3.85
7367 7482 3.097614 TCCAGGTAGCTTGTTAGGACTC 58.902 50.000 0.00 0.00 0.00 3.36
7368 7483 2.168728 CCAGGTAGCTTGTTAGGACTCC 59.831 54.545 0.00 0.00 0.00 3.85
7369 7484 2.168728 CAGGTAGCTTGTTAGGACTCCC 59.831 54.545 0.00 0.00 0.00 4.30
7370 7485 2.044630 AGGTAGCTTGTTAGGACTCCCT 59.955 50.000 0.00 0.00 46.62 4.20
7371 7486 3.271490 AGGTAGCTTGTTAGGACTCCCTA 59.729 47.826 0.00 0.00 43.97 3.53
7372 7487 3.637694 GGTAGCTTGTTAGGACTCCCTAG 59.362 52.174 0.00 0.00 45.26 3.02
7373 7488 2.112190 AGCTTGTTAGGACTCCCTAGC 58.888 52.381 0.00 0.00 45.26 3.42
7374 7489 2.112190 GCTTGTTAGGACTCCCTAGCT 58.888 52.381 0.00 0.00 45.26 3.32
7375 7490 2.502130 GCTTGTTAGGACTCCCTAGCTT 59.498 50.000 0.00 0.00 45.26 3.74
7376 7491 3.680196 GCTTGTTAGGACTCCCTAGCTTG 60.680 52.174 0.00 0.00 45.26 4.01
7377 7492 2.467880 TGTTAGGACTCCCTAGCTTGG 58.532 52.381 7.29 7.29 45.26 3.61
7378 7493 2.043939 TGTTAGGACTCCCTAGCTTGGA 59.956 50.000 16.43 10.03 45.26 3.53
7386 7501 4.173290 CTCCCTAGCTTGGAGTACTAGT 57.827 50.000 16.43 0.00 43.68 2.57
7387 7502 4.538738 CTCCCTAGCTTGGAGTACTAGTT 58.461 47.826 16.43 0.00 43.68 2.24
7388 7503 5.692928 CTCCCTAGCTTGGAGTACTAGTTA 58.307 45.833 16.43 0.00 43.68 2.24
7389 7504 5.692928 TCCCTAGCTTGGAGTACTAGTTAG 58.307 45.833 16.43 1.75 33.09 2.34
7674 7904 2.663478 GCGCATGAAACGTGTCGGA 61.663 57.895 0.30 0.00 0.00 4.55
7680 7910 0.032403 TGAAACGTGTCGGATCCGTT 59.968 50.000 32.15 18.76 45.76 4.44
7683 7913 0.665369 AACGTGTCGGATCCGTTGAC 60.665 55.000 32.15 23.36 42.59 3.18
7804 8034 4.277476 TGAAAGGTGAGTTTTGGTCACAT 58.723 39.130 5.65 0.00 45.24 3.21
7814 8044 3.557577 TTTGGTCACATGATCTTTGCG 57.442 42.857 0.00 0.00 0.00 4.85
7819 8049 3.065233 GGTCACATGATCTTTGCGCATTA 59.935 43.478 12.75 0.85 0.00 1.90
7826 8056 8.392612 CACATGATCTTTGCGCATTATATATCA 58.607 33.333 12.75 14.82 0.00 2.15
7882 8112 1.228644 TTGCACTGCAGGCCTTCAT 60.229 52.632 19.93 0.00 40.61 2.57
7918 8148 4.628074 AGTACATACTGACGTTTTGTGCT 58.372 39.130 0.00 0.00 34.72 4.40
7958 8188 4.147449 TCGATGCTCCTGTGCCCG 62.147 66.667 0.00 0.00 0.00 6.13
7979 8209 1.377594 GGTTAAACCGCCGGTCCAT 60.378 57.895 10.32 1.24 33.12 3.41
7986 8216 3.925090 CGCCGGTCCATAGGGGTC 61.925 72.222 1.90 0.00 38.11 4.46
7987 8217 3.557290 GCCGGTCCATAGGGGTCC 61.557 72.222 1.90 0.00 41.05 4.46
7988 8218 2.285868 CCGGTCCATAGGGGTCCT 59.714 66.667 0.00 0.00 42.16 3.85
7989 8219 2.140792 CCGGTCCATAGGGGTCCTG 61.141 68.421 0.00 0.00 42.16 3.86
7990 8220 2.808206 CGGTCCATAGGGGTCCTGC 61.808 68.421 0.00 0.00 42.16 4.85
8034 8294 2.890311 CAGGATGTTTTGGTGGTGCTAA 59.110 45.455 0.00 0.00 0.00 3.09
8035 8295 3.320541 CAGGATGTTTTGGTGGTGCTAAA 59.679 43.478 0.00 0.00 0.00 1.85
8036 8296 3.964031 AGGATGTTTTGGTGGTGCTAAAA 59.036 39.130 0.00 0.00 35.60 1.52
8041 8301 3.742433 TTTGGTGGTGCTAAAACATGG 57.258 42.857 0.00 0.00 0.00 3.66
8042 8302 2.666272 TGGTGGTGCTAAAACATGGA 57.334 45.000 0.00 0.00 0.00 3.41
8043 8303 2.235016 TGGTGGTGCTAAAACATGGAC 58.765 47.619 0.00 0.00 0.00 4.02
8044 8304 2.158534 TGGTGGTGCTAAAACATGGACT 60.159 45.455 0.00 0.00 0.00 3.85
8045 8305 2.488153 GGTGGTGCTAAAACATGGACTC 59.512 50.000 0.00 0.00 0.00 3.36
8046 8306 2.159627 GTGGTGCTAAAACATGGACTCG 59.840 50.000 0.00 0.00 0.00 4.18
8047 8307 1.130561 GGTGCTAAAACATGGACTCGC 59.869 52.381 0.00 0.00 0.00 5.03
8048 8308 1.804151 GTGCTAAAACATGGACTCGCA 59.196 47.619 0.00 0.00 0.00 5.10
8049 8309 1.804151 TGCTAAAACATGGACTCGCAC 59.196 47.619 0.00 0.00 0.00 5.34
8050 8310 1.130561 GCTAAAACATGGACTCGCACC 59.869 52.381 0.00 0.00 0.00 5.01
8051 8311 1.393539 CTAAAACATGGACTCGCACCG 59.606 52.381 0.00 0.00 0.00 4.94
8052 8312 1.234615 AAAACATGGACTCGCACCGG 61.235 55.000 0.00 0.00 0.00 5.28
8053 8313 2.391724 AAACATGGACTCGCACCGGT 62.392 55.000 0.00 0.00 0.00 5.28
8054 8314 2.815211 CATGGACTCGCACCGGTG 60.815 66.667 30.66 30.66 0.00 4.94
8055 8315 3.311110 ATGGACTCGCACCGGTGT 61.311 61.111 33.92 16.05 0.00 4.16
8056 8316 2.879233 ATGGACTCGCACCGGTGTT 61.879 57.895 33.92 17.10 0.00 3.32
8057 8317 2.737376 GGACTCGCACCGGTGTTC 60.737 66.667 33.92 23.32 0.00 3.18
8058 8318 2.737376 GACTCGCACCGGTGTTCC 60.737 66.667 33.92 17.72 0.00 3.62
8059 8319 3.509137 GACTCGCACCGGTGTTCCA 62.509 63.158 33.92 15.30 0.00 3.53
8060 8320 2.738521 CTCGCACCGGTGTTCCAG 60.739 66.667 33.92 20.22 0.00 3.86
8061 8321 4.308458 TCGCACCGGTGTTCCAGG 62.308 66.667 33.92 16.78 34.95 4.45
8062 8322 4.308458 CGCACCGGTGTTCCAGGA 62.308 66.667 33.92 0.00 33.72 3.86
8063 8323 2.351276 GCACCGGTGTTCCAGGAT 59.649 61.111 33.92 0.00 33.72 3.24
8064 8324 2.040544 GCACCGGTGTTCCAGGATG 61.041 63.158 33.92 6.73 33.72 3.51
8065 8325 1.374947 CACCGGTGTTCCAGGATGT 59.625 57.895 26.95 0.00 33.72 3.06
8066 8326 0.250727 CACCGGTGTTCCAGGATGTT 60.251 55.000 26.95 0.00 33.72 2.71
8067 8327 0.476771 ACCGGTGTTCCAGGATGTTT 59.523 50.000 6.12 0.00 33.72 2.83
8068 8328 1.133606 ACCGGTGTTCCAGGATGTTTT 60.134 47.619 6.12 0.00 33.72 2.43
8069 8329 1.269448 CCGGTGTTCCAGGATGTTTTG 59.731 52.381 0.00 0.00 32.09 2.44
8070 8330 1.269448 CGGTGTTCCAGGATGTTTTGG 59.731 52.381 0.00 0.00 35.74 3.28
8071 8331 2.316108 GGTGTTCCAGGATGTTTTGGT 58.684 47.619 0.00 0.00 35.89 3.67
8072 8332 2.035832 GGTGTTCCAGGATGTTTTGGTG 59.964 50.000 0.00 0.00 35.89 4.17
8073 8333 2.035832 GTGTTCCAGGATGTTTTGGTGG 59.964 50.000 0.00 0.00 35.89 4.61
8074 8334 2.316108 GTTCCAGGATGTTTTGGTGGT 58.684 47.619 0.00 0.00 35.89 4.16
8075 8335 1.993956 TCCAGGATGTTTTGGTGGTG 58.006 50.000 0.00 0.00 35.89 4.17
8140 8402 1.270412 CGTACTGCCACACCCTGTTAA 60.270 52.381 0.00 0.00 0.00 2.01
8159 8422 2.106477 AGCTAGTCTTGCTGGAAAGC 57.894 50.000 8.06 0.00 39.56 3.51
8178 8441 2.890474 GACAGCATACGGTGGCGG 60.890 66.667 0.00 5.51 45.16 6.13
8208 8471 5.564127 GCTTGTTTCGTACTTTCATAGTTGC 59.436 40.000 0.00 0.00 38.33 4.17
8274 8537 1.234615 TTGGAGGAAAAGCGCCGAAG 61.235 55.000 2.29 0.00 0.00 3.79
8315 8578 8.410912 AGTTATACTTGGTTTTGTTTTGGAGAC 58.589 33.333 0.00 0.00 0.00 3.36
8335 8598 2.946990 ACGTTTTTCCATTGTTCTCCGT 59.053 40.909 0.00 0.00 0.00 4.69
8396 8659 0.400594 ACTGCCCCAAGGTTCTGTAC 59.599 55.000 0.00 0.00 34.57 2.90
8406 8669 1.751437 GGTTCTGTACCTGCATTCCC 58.249 55.000 0.00 0.00 44.10 3.97
8407 8670 1.682087 GGTTCTGTACCTGCATTCCCC 60.682 57.143 0.00 0.00 44.10 4.81
8408 8671 0.623723 TTCTGTACCTGCATTCCCCC 59.376 55.000 0.00 0.00 0.00 5.40
8409 8672 0.548926 TCTGTACCTGCATTCCCCCA 60.549 55.000 0.00 0.00 0.00 4.96
8526 9087 1.908066 GCGATCGCTGAAACCGGTTT 61.908 55.000 32.08 32.08 38.26 3.27
8527 9088 0.515564 CGATCGCTGAAACCGGTTTT 59.484 50.000 32.06 16.37 32.11 2.43
8528 9089 1.069500 CGATCGCTGAAACCGGTTTTT 60.069 47.619 32.06 13.08 32.11 1.94
8558 9119 8.694975 TTTTCTTTTTGATTTTGATGACGTGA 57.305 26.923 0.00 0.00 0.00 4.35
8564 9125 4.725359 TGATTTTGATGACGTGATTGCAG 58.275 39.130 0.00 0.00 0.00 4.41
8637 9199 2.862738 TCGTGCTACGAGTCATCCA 58.137 52.632 7.20 0.00 46.73 3.41
8649 9211 3.181482 CGAGTCATCCAGCTGATAACACT 60.181 47.826 17.39 10.01 30.56 3.55
8654 9216 2.466846 TCCAGCTGATAACACTGCCTA 58.533 47.619 17.39 0.00 35.80 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.817418 TTGCTGGAACTATCTTACTTTTTGT 57.183 32.000 0.00 0.00 0.00 2.83
105 108 3.181528 GCATGATTTTTGGCGACATTGTG 60.182 43.478 0.00 0.00 42.32 3.33
163 166 3.432252 CGTAAGTTCTTTTGCTGGATCGT 59.568 43.478 0.00 0.00 0.00 3.73
339 343 1.972198 CTGGAACCACGGTCTAGCA 59.028 57.895 0.00 0.00 0.00 3.49
647 652 4.101448 CCCCTCACGCCCCTCTTG 62.101 72.222 0.00 0.00 0.00 3.02
693 698 4.141135 AGTGCTCCTAGAGTTCTAGCCATA 60.141 45.833 10.10 0.00 43.47 2.74
834 839 8.552610 TTTTCTAGAAAAGGCCATCATGGCTAG 61.553 40.741 28.11 19.23 46.95 3.42
835 840 6.806520 TTTTCTAGAAAAGGCCATCATGGCTA 60.807 38.462 28.11 10.54 46.95 3.93
836 841 6.045867 TTTTCTAGAAAAGGCCATCATGGCT 61.046 40.000 28.11 8.40 46.95 4.75
838 843 5.920193 TTTTCTAGAAAAGGCCATCATGG 57.080 39.130 23.65 0.00 36.65 3.66
839 844 6.690530 TGTTTTTCTAGAAAAGGCCATCATG 58.309 36.000 25.38 0.00 40.83 3.07
840 845 6.916360 TGTTTTTCTAGAAAAGGCCATCAT 57.084 33.333 25.38 0.00 40.83 2.45
841 846 6.723298 TTGTTTTTCTAGAAAAGGCCATCA 57.277 33.333 25.38 16.82 40.83 3.07
842 847 7.360353 GCATTTGTTTTTCTAGAAAAGGCCATC 60.360 37.037 25.38 15.09 40.83 3.51
843 848 6.427853 GCATTTGTTTTTCTAGAAAAGGCCAT 59.572 34.615 25.38 15.88 40.83 4.40
844 849 5.757808 GCATTTGTTTTTCTAGAAAAGGCCA 59.242 36.000 25.38 20.50 40.83 5.36
845 850 5.757808 TGCATTTGTTTTTCTAGAAAAGGCC 59.242 36.000 25.38 18.69 40.83 5.19
846 851 6.843069 TGCATTTGTTTTTCTAGAAAAGGC 57.157 33.333 25.38 21.96 40.83 4.35
847 852 8.882736 AGTTTGCATTTGTTTTTCTAGAAAAGG 58.117 29.630 25.38 11.35 40.83 3.11
848 853 9.693157 CAGTTTGCATTTGTTTTTCTAGAAAAG 57.307 29.630 25.38 16.25 40.83 2.27
849 854 8.663911 CCAGTTTGCATTTGTTTTTCTAGAAAA 58.336 29.630 23.65 23.65 38.40 2.29
850 855 7.821846 ACCAGTTTGCATTTGTTTTTCTAGAAA 59.178 29.630 13.99 13.99 0.00 2.52
851 856 7.327214 ACCAGTTTGCATTTGTTTTTCTAGAA 58.673 30.769 0.00 0.00 0.00 2.10
852 857 6.872920 ACCAGTTTGCATTTGTTTTTCTAGA 58.127 32.000 0.00 0.00 0.00 2.43
853 858 6.200854 GGACCAGTTTGCATTTGTTTTTCTAG 59.799 38.462 0.00 0.00 0.00 2.43
854 859 6.045955 GGACCAGTTTGCATTTGTTTTTCTA 58.954 36.000 0.00 0.00 0.00 2.10
855 860 4.875536 GGACCAGTTTGCATTTGTTTTTCT 59.124 37.500 0.00 0.00 0.00 2.52
856 861 4.633565 TGGACCAGTTTGCATTTGTTTTTC 59.366 37.500 0.00 0.00 0.00 2.29
857 862 4.394610 GTGGACCAGTTTGCATTTGTTTTT 59.605 37.500 0.00 0.00 0.00 1.94
858 863 3.938334 GTGGACCAGTTTGCATTTGTTTT 59.062 39.130 0.00 0.00 0.00 2.43
859 864 3.530535 GTGGACCAGTTTGCATTTGTTT 58.469 40.909 0.00 0.00 0.00 2.83
860 865 2.158971 GGTGGACCAGTTTGCATTTGTT 60.159 45.455 0.00 0.00 35.64 2.83
861 866 1.412343 GGTGGACCAGTTTGCATTTGT 59.588 47.619 0.00 0.00 35.64 2.83
862 867 1.688197 AGGTGGACCAGTTTGCATTTG 59.312 47.619 0.00 0.00 38.89 2.32
863 868 2.086610 AGGTGGACCAGTTTGCATTT 57.913 45.000 0.00 0.00 38.89 2.32
864 869 2.086610 AAGGTGGACCAGTTTGCATT 57.913 45.000 0.00 0.00 38.89 3.56
865 870 2.086610 AAAGGTGGACCAGTTTGCAT 57.913 45.000 0.00 0.00 38.89 3.96
866 871 2.303175 GTAAAGGTGGACCAGTTTGCA 58.697 47.619 10.76 0.00 38.89 4.08
876 881 4.764050 TTGTGAAGACTGTAAAGGTGGA 57.236 40.909 0.00 0.00 0.00 4.02
892 897 8.564574 GTGTATAGACCAGAAAAATGTTTGTGA 58.435 33.333 7.07 0.00 39.74 3.58
935 940 2.970639 CGAGAAGGGCTTGACCGA 59.029 61.111 0.00 0.00 40.62 4.69
937 942 2.436824 GGCGAGAAGGGCTTGACC 60.437 66.667 0.00 0.00 37.93 4.02
938 943 0.889186 TTTGGCGAGAAGGGCTTGAC 60.889 55.000 0.00 0.00 36.46 3.18
939 944 0.179004 TTTTGGCGAGAAGGGCTTGA 60.179 50.000 0.00 0.00 0.00 3.02
962 972 0.620700 GGGGGCTAGGGTTCTGAGAA 60.621 60.000 0.00 0.00 0.00 2.87
1077 1088 2.672651 TCGGGGAGCACGAACGTA 60.673 61.111 0.00 0.00 37.42 3.57
1078 1089 4.052229 CTCGGGGAGCACGAACGT 62.052 66.667 0.00 0.00 40.16 3.99
1191 1202 1.420641 CGTGCGCGATGATGGAGAAA 61.421 55.000 16.08 0.00 41.33 2.52
1604 1615 4.331968 ACTTCAAAATTAGGACCGCATCA 58.668 39.130 0.00 0.00 0.00 3.07
1610 1621 6.790285 TGTACGAACTTCAAAATTAGGACC 57.210 37.500 0.00 0.00 0.00 4.46
1611 1622 7.094933 ACCATGTACGAACTTCAAAATTAGGAC 60.095 37.037 0.00 0.00 0.00 3.85
1614 1625 9.146984 TCTACCATGTACGAACTTCAAAATTAG 57.853 33.333 0.00 0.00 0.00 1.73
1658 1669 8.511604 AATCATCCTTTTATCAAAGTCGTGAT 57.488 30.769 0.00 3.22 41.21 3.06
1712 1723 6.113411 ACTGTATGCTGTAAGGTTGTTATCC 58.887 40.000 0.00 0.00 0.00 2.59
2091 2114 3.263261 GAGGAAGCCTAAAGAGAAACCG 58.737 50.000 0.00 0.00 31.76 4.44
2245 2268 9.969001 AAGGGCTGAAAGTATAAAACTATACAA 57.031 29.630 5.38 0.00 37.50 2.41
2287 2310 5.916661 TTCTCTACCTGTTGATACCAGAC 57.083 43.478 0.00 0.00 31.38 3.51
2841 2864 3.498774 ATCTTATCTCCCTTGCGCATT 57.501 42.857 12.75 0.00 0.00 3.56
3088 3112 7.287696 CAGGGCCCAACTATTAAATTAATCAGT 59.712 37.037 27.56 2.64 0.00 3.41
3204 3230 3.826157 TCACAGGCTTGAAACCTAAATGG 59.174 43.478 1.40 0.00 42.93 3.16
3321 3347 5.064707 GCTTGTCTCTTTTGTAACAGACACA 59.935 40.000 0.11 0.00 43.85 3.72
3446 3472 7.065803 ACAAACTCTTGTACGGATCAATAATGG 59.934 37.037 0.00 0.00 44.14 3.16
3480 3506 7.995488 CCTAGGAAACCACATCTGAAAAGATAT 59.005 37.037 1.05 0.00 0.00 1.63
3685 3711 6.255020 CGCAAATTTTCCTACGAGTATACTGT 59.745 38.462 10.90 11.07 0.00 3.55
3750 3779 4.137543 GCAAGATAGACCCCCTTACAATG 58.862 47.826 0.00 0.00 0.00 2.82
3923 3958 4.142708 TGCTGATGCACTAACAAAATACCG 60.143 41.667 0.00 0.00 45.31 4.02
4008 4043 4.789012 ATCATGCAAACTAAACACTGGG 57.211 40.909 0.00 0.00 0.00 4.45
4010 4045 6.149308 TGAGGTATCATGCAAACTAAACACTG 59.851 38.462 0.00 0.00 0.00 3.66
4052 4093 2.596338 ACCGCAAAACCTTCGGGG 60.596 61.111 4.89 0.00 46.78 5.73
4066 4108 1.610554 TTCCGAGGCTAAAGGGACCG 61.611 60.000 0.00 0.00 0.00 4.79
4323 4365 6.974048 TGGCAAATTAAATCTCATGAACGATG 59.026 34.615 0.00 0.00 0.00 3.84
4327 4369 6.035327 GCAGTGGCAAATTAAATCTCATGAAC 59.965 38.462 0.00 0.00 40.72 3.18
5036 5091 8.094798 TCCTTTACAACCATATTCATATTCGC 57.905 34.615 0.00 0.00 0.00 4.70
5046 5102 7.555965 GCTTTTTCCATCCTTTACAACCATAT 58.444 34.615 0.00 0.00 0.00 1.78
5047 5103 6.349777 CGCTTTTTCCATCCTTTACAACCATA 60.350 38.462 0.00 0.00 0.00 2.74
5048 5104 5.566627 CGCTTTTTCCATCCTTTACAACCAT 60.567 40.000 0.00 0.00 0.00 3.55
5049 5105 4.261825 CGCTTTTTCCATCCTTTACAACCA 60.262 41.667 0.00 0.00 0.00 3.67
5050 5106 4.234574 CGCTTTTTCCATCCTTTACAACC 58.765 43.478 0.00 0.00 0.00 3.77
5051 5107 4.234574 CCGCTTTTTCCATCCTTTACAAC 58.765 43.478 0.00 0.00 0.00 3.32
5052 5108 3.892588 ACCGCTTTTTCCATCCTTTACAA 59.107 39.130 0.00 0.00 0.00 2.41
5053 5109 3.492337 ACCGCTTTTTCCATCCTTTACA 58.508 40.909 0.00 0.00 0.00 2.41
5054 5110 4.095932 CCTACCGCTTTTTCCATCCTTTAC 59.904 45.833 0.00 0.00 0.00 2.01
5055 5111 4.019141 TCCTACCGCTTTTTCCATCCTTTA 60.019 41.667 0.00 0.00 0.00 1.85
5056 5112 3.089284 CCTACCGCTTTTTCCATCCTTT 58.911 45.455 0.00 0.00 0.00 3.11
5057 5113 2.307686 TCCTACCGCTTTTTCCATCCTT 59.692 45.455 0.00 0.00 0.00 3.36
5058 5114 1.913419 TCCTACCGCTTTTTCCATCCT 59.087 47.619 0.00 0.00 0.00 3.24
5059 5115 2.289565 CTCCTACCGCTTTTTCCATCC 58.710 52.381 0.00 0.00 0.00 3.51
5060 5116 2.987232 ACTCCTACCGCTTTTTCCATC 58.013 47.619 0.00 0.00 0.00 3.51
5061 5117 4.514401 CTTACTCCTACCGCTTTTTCCAT 58.486 43.478 0.00 0.00 0.00 3.41
5062 5118 3.867216 GCTTACTCCTACCGCTTTTTCCA 60.867 47.826 0.00 0.00 0.00 3.53
5063 5119 2.676839 GCTTACTCCTACCGCTTTTTCC 59.323 50.000 0.00 0.00 0.00 3.13
5064 5120 2.347755 CGCTTACTCCTACCGCTTTTTC 59.652 50.000 0.00 0.00 0.00 2.29
5065 5121 2.028748 TCGCTTACTCCTACCGCTTTTT 60.029 45.455 0.00 0.00 0.00 1.94
5066 5122 1.547372 TCGCTTACTCCTACCGCTTTT 59.453 47.619 0.00 0.00 0.00 2.27
5067 5123 1.134560 CTCGCTTACTCCTACCGCTTT 59.865 52.381 0.00 0.00 0.00 3.51
5068 5124 0.739561 CTCGCTTACTCCTACCGCTT 59.260 55.000 0.00 0.00 0.00 4.68
5069 5125 1.102222 CCTCGCTTACTCCTACCGCT 61.102 60.000 0.00 0.00 0.00 5.52
5070 5126 1.359475 CCTCGCTTACTCCTACCGC 59.641 63.158 0.00 0.00 0.00 5.68
5071 5127 1.359475 GCCTCGCTTACTCCTACCG 59.641 63.158 0.00 0.00 0.00 4.02
5072 5128 1.359475 CGCCTCGCTTACTCCTACC 59.641 63.158 0.00 0.00 0.00 3.18
5073 5129 1.359475 CCGCCTCGCTTACTCCTAC 59.641 63.158 0.00 0.00 0.00 3.18
5074 5130 0.682209 AACCGCCTCGCTTACTCCTA 60.682 55.000 0.00 0.00 0.00 2.94
5075 5131 1.982938 AACCGCCTCGCTTACTCCT 60.983 57.895 0.00 0.00 0.00 3.69
5076 5132 1.810030 CAACCGCCTCGCTTACTCC 60.810 63.158 0.00 0.00 0.00 3.85
5077 5133 1.810030 CCAACCGCCTCGCTTACTC 60.810 63.158 0.00 0.00 0.00 2.59
5078 5134 2.264794 CCAACCGCCTCGCTTACT 59.735 61.111 0.00 0.00 0.00 2.24
5079 5135 3.497031 GCCAACCGCCTCGCTTAC 61.497 66.667 0.00 0.00 0.00 2.34
5116 5172 0.819582 TATATTACCGCCTAGGCCGC 59.180 55.000 28.09 3.58 46.52 6.53
5117 5173 2.097825 ACTATATTACCGCCTAGGCCG 58.902 52.381 28.09 23.38 46.52 6.13
5118 5174 4.222366 AGAAACTATATTACCGCCTAGGCC 59.778 45.833 28.09 10.55 46.52 5.19
5119 5175 5.402997 AGAAACTATATTACCGCCTAGGC 57.597 43.478 24.75 24.75 46.52 3.93
5120 5176 7.413877 CGAGTAGAAACTATATTACCGCCTAGG 60.414 44.444 3.67 3.67 40.55 3.02
5121 5177 7.118971 ACGAGTAGAAACTATATTACCGCCTAG 59.881 40.741 0.00 0.00 35.56 3.02
5122 5178 6.936900 ACGAGTAGAAACTATATTACCGCCTA 59.063 38.462 0.00 0.00 35.56 3.93
5123 5179 5.767168 ACGAGTAGAAACTATATTACCGCCT 59.233 40.000 0.00 0.00 35.56 5.52
5124 5180 6.006759 ACGAGTAGAAACTATATTACCGCC 57.993 41.667 0.00 0.00 35.56 6.13
5125 5181 7.743838 CACTACGAGTAGAAACTATATTACCGC 59.256 40.741 16.27 0.00 35.56 5.68
5126 5182 8.768955 ACACTACGAGTAGAAACTATATTACCG 58.231 37.037 16.27 0.00 35.56 4.02
5133 5189 9.784680 CACAAATACACTACGAGTAGAAACTAT 57.215 33.333 16.27 3.61 35.56 2.12
5134 5190 9.002600 TCACAAATACACTACGAGTAGAAACTA 57.997 33.333 16.27 1.71 35.56 2.24
5135 5191 7.879070 TCACAAATACACTACGAGTAGAAACT 58.121 34.615 16.27 0.00 39.21 2.66
5136 5192 8.684973 ATCACAAATACACTACGAGTAGAAAC 57.315 34.615 16.27 0.00 36.97 2.78
5138 5194 9.778993 GTAATCACAAATACACTACGAGTAGAA 57.221 33.333 16.27 2.96 36.97 2.10
5139 5195 9.170734 AGTAATCACAAATACACTACGAGTAGA 57.829 33.333 16.27 0.00 36.97 2.59
5148 5204 9.778741 CACCCATATAGTAATCACAAATACACT 57.221 33.333 0.00 0.00 0.00 3.55
5149 5205 9.555727 ACACCCATATAGTAATCACAAATACAC 57.444 33.333 0.00 0.00 0.00 2.90
5153 5209 9.866655 ATCAACACCCATATAGTAATCACAAAT 57.133 29.630 0.00 0.00 0.00 2.32
5166 5222 9.255029 GCCCTAAAATAATATCAACACCCATAT 57.745 33.333 0.00 0.00 0.00 1.78
5167 5223 8.228206 TGCCCTAAAATAATATCAACACCCATA 58.772 33.333 0.00 0.00 0.00 2.74
5168 5224 7.072562 TGCCCTAAAATAATATCAACACCCAT 58.927 34.615 0.00 0.00 0.00 4.00
5169 5225 6.436027 TGCCCTAAAATAATATCAACACCCA 58.564 36.000 0.00 0.00 0.00 4.51
5170 5226 6.969993 TGCCCTAAAATAATATCAACACCC 57.030 37.500 0.00 0.00 0.00 4.61
5197 5253 9.609346 ATGCAGTAGACGGTAATTAACTTATTT 57.391 29.630 0.00 0.00 0.00 1.40
5198 5254 9.609346 AATGCAGTAGACGGTAATTAACTTATT 57.391 29.630 0.00 0.00 0.00 1.40
5199 5255 9.042008 CAATGCAGTAGACGGTAATTAACTTAT 57.958 33.333 0.00 0.00 0.00 1.73
5200 5256 7.493320 CCAATGCAGTAGACGGTAATTAACTTA 59.507 37.037 0.00 0.00 0.00 2.24
5201 5257 6.315393 CCAATGCAGTAGACGGTAATTAACTT 59.685 38.462 0.00 0.00 0.00 2.66
5202 5258 5.815740 CCAATGCAGTAGACGGTAATTAACT 59.184 40.000 0.00 0.00 0.00 2.24
5203 5259 5.813672 TCCAATGCAGTAGACGGTAATTAAC 59.186 40.000 0.00 0.00 0.00 2.01
5204 5260 5.979993 TCCAATGCAGTAGACGGTAATTAA 58.020 37.500 0.00 0.00 0.00 1.40
5205 5261 5.601583 TCCAATGCAGTAGACGGTAATTA 57.398 39.130 0.00 0.00 0.00 1.40
5206 5262 4.481368 TCCAATGCAGTAGACGGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
5207 5263 4.481368 TTCCAATGCAGTAGACGGTAAT 57.519 40.909 0.00 0.00 0.00 1.89
5208 5264 3.965379 TTCCAATGCAGTAGACGGTAA 57.035 42.857 0.00 0.00 0.00 2.85
5209 5265 5.801531 ATATTCCAATGCAGTAGACGGTA 57.198 39.130 0.00 0.00 0.00 4.02
5210 5266 4.689612 ATATTCCAATGCAGTAGACGGT 57.310 40.909 0.00 0.00 0.00 4.83
5211 5267 5.118664 CGTTATATTCCAATGCAGTAGACGG 59.881 44.000 0.00 0.00 0.00 4.79
5212 5268 5.690409 ACGTTATATTCCAATGCAGTAGACG 59.310 40.000 0.00 0.00 0.00 4.18
5213 5269 6.479001 ACACGTTATATTCCAATGCAGTAGAC 59.521 38.462 0.00 0.00 0.00 2.59
5214 5270 6.578944 ACACGTTATATTCCAATGCAGTAGA 58.421 36.000 0.00 0.00 0.00 2.59
5215 5271 6.844696 ACACGTTATATTCCAATGCAGTAG 57.155 37.500 0.00 0.00 0.00 2.57
5216 5272 7.414651 CCAAACACGTTATATTCCAATGCAGTA 60.415 37.037 0.00 0.00 0.00 2.74
5217 5273 6.321717 CAAACACGTTATATTCCAATGCAGT 58.678 36.000 0.00 0.00 0.00 4.40
5218 5274 5.743398 CCAAACACGTTATATTCCAATGCAG 59.257 40.000 0.00 0.00 0.00 4.41
5219 5275 5.645624 CCAAACACGTTATATTCCAATGCA 58.354 37.500 0.00 0.00 0.00 3.96
5220 5276 4.502645 GCCAAACACGTTATATTCCAATGC 59.497 41.667 0.00 0.00 0.00 3.56
5221 5277 5.645624 TGCCAAACACGTTATATTCCAATG 58.354 37.500 0.00 0.00 0.00 2.82
5222 5278 5.906113 TGCCAAACACGTTATATTCCAAT 57.094 34.783 0.00 0.00 0.00 3.16
5223 5279 5.906113 ATGCCAAACACGTTATATTCCAA 57.094 34.783 0.00 0.00 0.00 3.53
5224 5280 6.768381 TGATATGCCAAACACGTTATATTCCA 59.232 34.615 0.00 0.00 0.00 3.53
5225 5281 7.041372 ACTGATATGCCAAACACGTTATATTCC 60.041 37.037 0.00 0.00 0.00 3.01
5226 5282 7.798516 CACTGATATGCCAAACACGTTATATTC 59.201 37.037 0.00 0.00 0.00 1.75
5227 5283 7.255104 CCACTGATATGCCAAACACGTTATATT 60.255 37.037 0.00 0.00 0.00 1.28
5228 5284 6.204688 CCACTGATATGCCAAACACGTTATAT 59.795 38.462 0.00 0.00 0.00 0.86
5229 5285 5.525745 CCACTGATATGCCAAACACGTTATA 59.474 40.000 0.00 0.00 0.00 0.98
5230 5286 4.335315 CCACTGATATGCCAAACACGTTAT 59.665 41.667 0.00 0.00 0.00 1.89
5231 5287 3.687212 CCACTGATATGCCAAACACGTTA 59.313 43.478 0.00 0.00 0.00 3.18
5232 5288 2.487762 CCACTGATATGCCAAACACGTT 59.512 45.455 0.00 0.00 0.00 3.99
5233 5289 2.083774 CCACTGATATGCCAAACACGT 58.916 47.619 0.00 0.00 0.00 4.49
5234 5290 2.352651 CTCCACTGATATGCCAAACACG 59.647 50.000 0.00 0.00 0.00 4.49
5235 5291 3.347216 ACTCCACTGATATGCCAAACAC 58.653 45.455 0.00 0.00 0.00 3.32
5236 5292 3.719268 ACTCCACTGATATGCCAAACA 57.281 42.857 0.00 0.00 0.00 2.83
5237 5293 5.008019 CACATACTCCACTGATATGCCAAAC 59.992 44.000 0.00 0.00 30.78 2.93
5238 5294 5.125356 CACATACTCCACTGATATGCCAAA 58.875 41.667 0.00 0.00 30.78 3.28
5239 5295 4.444733 CCACATACTCCACTGATATGCCAA 60.445 45.833 0.00 0.00 30.78 4.52
5240 5296 3.071457 CCACATACTCCACTGATATGCCA 59.929 47.826 0.00 0.00 30.78 4.92
5241 5297 3.668447 CCACATACTCCACTGATATGCC 58.332 50.000 0.00 0.00 30.78 4.40
5242 5298 3.070018 GCCACATACTCCACTGATATGC 58.930 50.000 0.00 0.00 30.78 3.14
5243 5299 4.341366 TGCCACATACTCCACTGATATG 57.659 45.455 0.00 0.00 33.38 1.78
5244 5300 4.594491 TCATGCCACATACTCCACTGATAT 59.406 41.667 0.00 0.00 0.00 1.63
5245 5301 3.966665 TCATGCCACATACTCCACTGATA 59.033 43.478 0.00 0.00 0.00 2.15
5246 5302 2.773661 TCATGCCACATACTCCACTGAT 59.226 45.455 0.00 0.00 0.00 2.90
5247 5303 2.187100 TCATGCCACATACTCCACTGA 58.813 47.619 0.00 0.00 0.00 3.41
5248 5304 2.696989 TCATGCCACATACTCCACTG 57.303 50.000 0.00 0.00 0.00 3.66
5249 5305 3.939740 AATCATGCCACATACTCCACT 57.060 42.857 0.00 0.00 0.00 4.00
5250 5306 4.202441 AGAAATCATGCCACATACTCCAC 58.798 43.478 0.00 0.00 0.00 4.02
5251 5307 4.508551 AGAAATCATGCCACATACTCCA 57.491 40.909 0.00 0.00 0.00 3.86
5252 5308 4.498682 GCAAGAAATCATGCCACATACTCC 60.499 45.833 0.00 0.00 34.80 3.85
5253 5309 4.337555 AGCAAGAAATCATGCCACATACTC 59.662 41.667 6.98 0.00 41.05 2.59
5254 5310 4.275810 AGCAAGAAATCATGCCACATACT 58.724 39.130 6.98 0.00 41.05 2.12
5255 5311 4.644103 AGCAAGAAATCATGCCACATAC 57.356 40.909 6.98 0.00 41.05 2.39
5256 5312 4.142116 CCAAGCAAGAAATCATGCCACATA 60.142 41.667 6.98 0.00 41.05 2.29
5257 5313 3.369052 CCAAGCAAGAAATCATGCCACAT 60.369 43.478 6.98 0.00 41.05 3.21
5258 5314 2.028839 CCAAGCAAGAAATCATGCCACA 60.029 45.455 6.98 0.00 41.05 4.17
5259 5315 2.613691 CCAAGCAAGAAATCATGCCAC 58.386 47.619 6.98 0.00 41.05 5.01
5260 5316 1.551430 CCCAAGCAAGAAATCATGCCA 59.449 47.619 6.98 0.00 41.05 4.92
5261 5317 1.551883 ACCCAAGCAAGAAATCATGCC 59.448 47.619 6.98 0.00 41.05 4.40
5262 5318 3.181483 CCTACCCAAGCAAGAAATCATGC 60.181 47.826 2.56 2.56 40.51 4.06
5263 5319 3.181483 GCCTACCCAAGCAAGAAATCATG 60.181 47.826 0.00 0.00 0.00 3.07
5264 5320 3.026694 GCCTACCCAAGCAAGAAATCAT 58.973 45.455 0.00 0.00 0.00 2.45
5265 5321 2.224992 TGCCTACCCAAGCAAGAAATCA 60.225 45.455 0.00 0.00 35.69 2.57
5266 5322 2.446435 TGCCTACCCAAGCAAGAAATC 58.554 47.619 0.00 0.00 35.69 2.17
5267 5323 2.603075 TGCCTACCCAAGCAAGAAAT 57.397 45.000 0.00 0.00 35.69 2.17
5268 5324 2.373335 TTGCCTACCCAAGCAAGAAA 57.627 45.000 0.00 0.00 43.74 2.52
5273 5329 3.281332 GGAATTGCCTACCCAAGCA 57.719 52.632 0.00 0.00 37.18 3.91
5285 5341 0.390735 GCAGGGCAAGCAAGGAATTG 60.391 55.000 0.00 0.00 0.00 2.32
5286 5342 1.547472 GGCAGGGCAAGCAAGGAATT 61.547 55.000 2.86 0.00 0.00 2.17
5287 5343 1.986210 GGCAGGGCAAGCAAGGAAT 60.986 57.895 2.86 0.00 0.00 3.01
5288 5344 1.788518 TAGGCAGGGCAAGCAAGGAA 61.789 55.000 2.86 0.00 0.00 3.36
5289 5345 2.202236 CTAGGCAGGGCAAGCAAGGA 62.202 60.000 2.86 0.00 0.00 3.36
5290 5346 1.751927 CTAGGCAGGGCAAGCAAGG 60.752 63.158 2.86 0.00 0.00 3.61
5291 5347 1.028868 GTCTAGGCAGGGCAAGCAAG 61.029 60.000 2.86 0.30 0.00 4.01
5292 5348 1.002134 GTCTAGGCAGGGCAAGCAA 60.002 57.895 2.86 0.00 0.00 3.91
5293 5349 2.671070 GTCTAGGCAGGGCAAGCA 59.329 61.111 2.86 0.00 0.00 3.91
5294 5350 2.124529 GGTCTAGGCAGGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
5295 5351 1.524482 GAGGTCTAGGCAGGGCAAG 59.476 63.158 0.00 0.00 0.00 4.01
5296 5352 1.995626 GGAGGTCTAGGCAGGGCAA 60.996 63.158 0.00 0.00 0.00 4.52
5297 5353 2.365635 GGAGGTCTAGGCAGGGCA 60.366 66.667 0.00 0.00 0.00 5.36
5298 5354 1.348775 AATGGAGGTCTAGGCAGGGC 61.349 60.000 0.00 0.00 0.00 5.19
5299 5355 1.216990 AAATGGAGGTCTAGGCAGGG 58.783 55.000 0.00 0.00 0.00 4.45
5300 5356 3.808618 GCATAAATGGAGGTCTAGGCAGG 60.809 52.174 0.00 0.00 0.00 4.85
5301 5357 3.406764 GCATAAATGGAGGTCTAGGCAG 58.593 50.000 0.00 0.00 0.00 4.85
5302 5358 2.106511 GGCATAAATGGAGGTCTAGGCA 59.893 50.000 0.00 0.00 0.00 4.75
5303 5359 2.553247 GGGCATAAATGGAGGTCTAGGC 60.553 54.545 0.00 0.00 0.00 3.93
5304 5360 2.982488 AGGGCATAAATGGAGGTCTAGG 59.018 50.000 0.00 0.00 0.00 3.02
5305 5361 4.223923 CCTAGGGCATAAATGGAGGTCTAG 59.776 50.000 0.00 0.00 0.00 2.43
5306 5362 4.168101 CCTAGGGCATAAATGGAGGTCTA 58.832 47.826 0.00 0.00 0.00 2.59
5307 5363 2.982488 CCTAGGGCATAAATGGAGGTCT 59.018 50.000 0.00 0.00 0.00 3.85
5308 5364 2.711547 ACCTAGGGCATAAATGGAGGTC 59.288 50.000 14.81 0.00 29.80 3.85
5309 5365 2.443255 CACCTAGGGCATAAATGGAGGT 59.557 50.000 14.81 0.00 36.25 3.85
5310 5366 2.711009 TCACCTAGGGCATAAATGGAGG 59.289 50.000 14.81 0.00 0.00 4.30
5311 5367 3.244700 CCTCACCTAGGGCATAAATGGAG 60.245 52.174 14.81 5.43 42.32 3.86
5312 5368 2.711009 CCTCACCTAGGGCATAAATGGA 59.289 50.000 14.81 0.00 42.32 3.41
5313 5369 2.815589 GCCTCACCTAGGGCATAAATGG 60.816 54.545 14.81 4.78 46.65 3.16
5314 5370 2.508526 GCCTCACCTAGGGCATAAATG 58.491 52.381 14.81 0.00 46.65 2.32
5315 5371 2.959465 GCCTCACCTAGGGCATAAAT 57.041 50.000 14.81 0.00 46.65 1.40
5321 5377 1.745489 CAAACGCCTCACCTAGGGC 60.745 63.158 14.81 5.65 46.65 5.19
5322 5378 1.078426 CCAAACGCCTCACCTAGGG 60.078 63.158 14.81 2.03 46.65 3.53
5324 5380 3.890674 GCCAAACGCCTCACCTAG 58.109 61.111 0.00 0.00 0.00 3.02
5340 5396 2.830370 AAGGCGCTAGGCAATGGC 60.830 61.111 7.64 0.00 46.16 4.40
5341 5397 0.106708 TAGAAGGCGCTAGGCAATGG 59.893 55.000 7.64 0.00 46.16 3.16
5342 5398 1.506493 CTAGAAGGCGCTAGGCAATG 58.494 55.000 7.64 0.00 46.16 2.82
5343 5399 3.997672 CTAGAAGGCGCTAGGCAAT 57.002 52.632 7.64 0.00 46.16 3.56
5362 5418 1.000938 CTCTGTTGGAAAAGGCAGTGC 60.001 52.381 6.55 6.55 0.00 4.40
5363 5419 1.610522 CCTCTGTTGGAAAAGGCAGTG 59.389 52.381 0.00 0.00 0.00 3.66
5364 5420 1.215423 ACCTCTGTTGGAAAAGGCAGT 59.785 47.619 0.00 0.00 31.79 4.40
5365 5421 1.986882 ACCTCTGTTGGAAAAGGCAG 58.013 50.000 0.00 0.00 31.79 4.85
5366 5422 2.031120 CAACCTCTGTTGGAAAAGGCA 58.969 47.619 0.00 0.00 46.56 4.75
5367 5423 2.800881 CAACCTCTGTTGGAAAAGGC 57.199 50.000 0.00 0.00 46.56 4.35
5376 5432 3.551846 CCACAACCTTACAACCTCTGTT 58.448 45.455 0.00 0.00 39.64 3.16
5377 5433 2.748465 GCCACAACCTTACAACCTCTGT 60.748 50.000 0.00 0.00 42.47 3.41
5378 5434 1.880027 GCCACAACCTTACAACCTCTG 59.120 52.381 0.00 0.00 0.00 3.35
5379 5435 1.774856 AGCCACAACCTTACAACCTCT 59.225 47.619 0.00 0.00 0.00 3.69
5380 5436 2.152016 GAGCCACAACCTTACAACCTC 58.848 52.381 0.00 0.00 0.00 3.85
5381 5437 1.493022 TGAGCCACAACCTTACAACCT 59.507 47.619 0.00 0.00 0.00 3.50
5467 5523 6.324512 TCATATTCATAAGCAAGGCCAACAAT 59.675 34.615 5.01 0.00 0.00 2.71
5504 5560 5.767670 ACTTAGTAGGCTGGATTAGAGACA 58.232 41.667 0.00 0.00 0.00 3.41
5531 5587 8.399425 TGTCTAAAGCAAAAATTTGTTCTCGTA 58.601 29.630 7.64 0.00 40.24 3.43
5655 5711 7.436430 TGTAAATAATTTGTACACCGCTTGA 57.564 32.000 0.00 0.00 0.00 3.02
5660 5716 9.153952 CATCGAATGTAAATAATTTGTACACCG 57.846 33.333 0.00 0.00 30.90 4.94
6077 6148 6.196079 AGGAGACAAAGTTCAACTTCAAAC 57.804 37.500 2.45 0.00 37.47 2.93
6150 6221 6.183360 CCCACTGCTGAAGGAAATATAAGTTG 60.183 42.308 0.00 0.00 0.00 3.16
6275 6354 5.892160 CCATCATTGGGCATGAACTATAG 57.108 43.478 0.00 0.00 45.45 1.31
6357 6436 5.393866 ACTACATTTCCCTTCCAATTGTGT 58.606 37.500 4.43 1.49 0.00 3.72
6358 6437 5.982890 ACTACATTTCCCTTCCAATTGTG 57.017 39.130 4.43 0.00 0.00 3.33
6413 6493 3.277142 ACCCAATACCGAAATCCACTC 57.723 47.619 0.00 0.00 0.00 3.51
6663 6744 8.943002 CCTGAACTACCAAAACGTCTTATATTT 58.057 33.333 0.00 0.00 0.00 1.40
6686 6767 5.832539 ATTATGTACTCCCTCCATTCCTG 57.167 43.478 0.00 0.00 0.00 3.86
6754 6835 7.059488 GTGAAGTGCATACAAATGTTAACTTCG 59.941 37.037 7.22 0.00 43.69 3.79
7019 7105 1.201987 CGCACAATTAACACCTACCGC 60.202 52.381 0.00 0.00 0.00 5.68
7020 7106 2.070783 ACGCACAATTAACACCTACCG 58.929 47.619 0.00 0.00 0.00 4.02
7021 7107 5.565695 CAATACGCACAATTAACACCTACC 58.434 41.667 0.00 0.00 0.00 3.18
7023 7109 4.095185 GGCAATACGCACAATTAACACCTA 59.905 41.667 0.00 0.00 45.17 3.08
7024 7110 3.119637 GGCAATACGCACAATTAACACCT 60.120 43.478 0.00 0.00 45.17 4.00
7027 7113 3.366476 GGTGGCAATACGCACAATTAACA 60.366 43.478 0.00 0.00 45.17 2.41
7137 7224 2.440247 GCGGGGGCTTAAGTGCAT 60.440 61.111 4.02 0.00 34.04 3.96
7265 7353 2.490509 CTGATGCACAAAGGCTGATTGA 59.509 45.455 5.95 0.00 34.04 2.57
7365 7480 8.385267 GACTAACTAGTACTCCAAGCTAGGGAG 61.385 48.148 25.33 25.33 45.80 4.30
7366 7481 4.604784 AACTAGTACTCCAAGCTAGGGA 57.395 45.455 0.00 6.84 37.20 4.20
7367 7482 5.447757 ACTAACTAGTACTCCAAGCTAGGG 58.552 45.833 0.00 0.00 37.20 3.53
7368 7483 6.038492 GTGACTAACTAGTACTCCAAGCTAGG 59.962 46.154 0.00 0.00 37.20 3.02
7369 7484 6.038492 GGTGACTAACTAGTACTCCAAGCTAG 59.962 46.154 0.00 0.00 36.50 3.42
7370 7485 5.884792 GGTGACTAACTAGTACTCCAAGCTA 59.115 44.000 0.00 0.00 36.50 3.32
7371 7486 4.705991 GGTGACTAACTAGTACTCCAAGCT 59.294 45.833 0.00 0.00 36.50 3.74
7372 7487 4.142204 GGGTGACTAACTAGTACTCCAAGC 60.142 50.000 0.00 0.00 36.50 4.01
7373 7488 5.014858 TGGGTGACTAACTAGTACTCCAAG 58.985 45.833 0.00 0.00 36.50 3.61
7374 7489 5.001833 TGGGTGACTAACTAGTACTCCAA 57.998 43.478 0.00 0.00 36.50 3.53
7375 7490 4.043812 ACTGGGTGACTAACTAGTACTCCA 59.956 45.833 0.00 0.00 36.50 3.86
7376 7491 4.598022 ACTGGGTGACTAACTAGTACTCC 58.402 47.826 0.00 0.00 36.50 3.85
7377 7492 5.945191 AGAACTGGGTGACTAACTAGTACTC 59.055 44.000 0.00 0.00 36.50 2.59
7378 7493 5.890049 AGAACTGGGTGACTAACTAGTACT 58.110 41.667 0.00 0.00 36.50 2.73
7379 7494 7.693969 TTAGAACTGGGTGACTAACTAGTAC 57.306 40.000 0.00 0.00 36.50 2.73
7380 7495 8.890410 AATTAGAACTGGGTGACTAACTAGTA 57.110 34.615 0.00 0.00 36.50 1.82
7381 7496 7.793948 AATTAGAACTGGGTGACTAACTAGT 57.206 36.000 0.00 0.00 39.71 2.57
7388 7503 8.934023 TGAAAATAAATTAGAACTGGGTGACT 57.066 30.769 0.00 0.00 0.00 3.41
7389 7504 9.406828 GTTGAAAATAAATTAGAACTGGGTGAC 57.593 33.333 0.00 0.00 0.00 3.67
7469 7584 9.654663 GAAAATAAAAGAGTACTCCAGCTAAGA 57.345 33.333 19.38 0.00 0.00 2.10
7674 7904 0.255890 CTTGGGGGATGTCAACGGAT 59.744 55.000 0.00 0.00 0.00 4.18
7680 7910 1.299648 CGCTTCTTGGGGGATGTCA 59.700 57.895 0.00 0.00 0.00 3.58
7683 7913 1.032114 GGAACGCTTCTTGGGGGATG 61.032 60.000 0.00 0.00 0.00 3.51
7804 8034 6.878389 TGGTGATATATAATGCGCAAAGATCA 59.122 34.615 17.11 15.45 0.00 2.92
7814 8044 7.989741 ACTATGGAAGCTGGTGATATATAATGC 59.010 37.037 0.00 0.00 0.00 3.56
7819 8049 7.118496 GCTACTATGGAAGCTGGTGATATAT 57.882 40.000 0.00 0.00 35.80 0.86
7882 8112 1.707106 TGTACTCGGTGAACAAGGGA 58.293 50.000 0.00 0.00 0.00 4.20
7918 8148 2.048222 GTGGTGCTACGCTGCTCA 60.048 61.111 0.00 0.00 0.00 4.26
7944 8174 3.790437 CCTCGGGCACAGGAGCAT 61.790 66.667 0.00 0.00 35.83 3.79
7958 8188 1.742880 GACCGGCGGTTTAACCCTC 60.743 63.158 34.58 14.01 35.25 4.30
7988 8218 4.927782 AAGGTTCGCAGCACCGCA 62.928 61.111 0.00 0.00 39.56 5.69
7989 8219 4.389576 CAAGGTTCGCAGCACCGC 62.390 66.667 0.00 0.00 39.56 5.68
7990 8220 3.726517 CCAAGGTTCGCAGCACCG 61.727 66.667 0.00 0.00 39.56 4.94
8034 8294 1.671054 CCGGTGCGAGTCCATGTTT 60.671 57.895 0.00 0.00 0.00 2.83
8035 8295 2.047274 CCGGTGCGAGTCCATGTT 60.047 61.111 0.00 0.00 0.00 2.71
8036 8296 3.311110 ACCGGTGCGAGTCCATGT 61.311 61.111 6.12 0.00 0.00 3.21
8037 8297 2.815211 CACCGGTGCGAGTCCATG 60.815 66.667 24.02 0.00 0.00 3.66
8038 8298 2.781595 GAACACCGGTGCGAGTCCAT 62.782 60.000 34.26 9.57 0.00 3.41
8039 8299 3.509137 GAACACCGGTGCGAGTCCA 62.509 63.158 34.26 0.00 0.00 4.02
8040 8300 2.737376 GAACACCGGTGCGAGTCC 60.737 66.667 34.26 12.92 0.00 3.85
8041 8301 2.737376 GGAACACCGGTGCGAGTC 60.737 66.667 34.26 23.69 0.00 3.36
8042 8302 3.515316 CTGGAACACCGGTGCGAGT 62.515 63.158 34.26 17.10 0.00 4.18
8043 8303 2.738521 CTGGAACACCGGTGCGAG 60.739 66.667 34.26 20.47 0.00 5.03
8044 8304 4.308458 CCTGGAACACCGGTGCGA 62.308 66.667 34.26 15.14 0.00 5.10
8045 8305 3.605749 ATCCTGGAACACCGGTGCG 62.606 63.158 34.26 12.93 0.00 5.34
8046 8306 2.040544 CATCCTGGAACACCGGTGC 61.041 63.158 34.26 18.78 0.00 5.01
8047 8307 0.250727 AACATCCTGGAACACCGGTG 60.251 55.000 32.83 32.83 0.00 4.94
8048 8308 0.476771 AAACATCCTGGAACACCGGT 59.523 50.000 0.00 0.00 0.00 5.28
8049 8309 1.269448 CAAAACATCCTGGAACACCGG 59.731 52.381 0.00 0.00 0.00 5.28
8050 8310 1.269448 CCAAAACATCCTGGAACACCG 59.731 52.381 0.00 0.00 34.35 4.94
8051 8311 2.035832 CACCAAAACATCCTGGAACACC 59.964 50.000 0.00 0.00 36.49 4.16
8052 8312 2.035832 CCACCAAAACATCCTGGAACAC 59.964 50.000 0.00 0.00 36.49 3.32
8053 8313 2.315176 CCACCAAAACATCCTGGAACA 58.685 47.619 0.00 0.00 36.49 3.18
8054 8314 2.035832 CACCACCAAAACATCCTGGAAC 59.964 50.000 0.00 0.00 36.49 3.62
8055 8315 2.315176 CACCACCAAAACATCCTGGAA 58.685 47.619 0.00 0.00 36.49 3.53
8056 8316 1.993956 CACCACCAAAACATCCTGGA 58.006 50.000 0.00 0.00 36.49 3.86
8057 8317 0.318120 GCACCACCAAAACATCCTGG 59.682 55.000 0.00 0.00 38.77 4.45
8058 8318 1.331214 AGCACCACCAAAACATCCTG 58.669 50.000 0.00 0.00 0.00 3.86
8059 8319 2.969821 TAGCACCACCAAAACATCCT 57.030 45.000 0.00 0.00 0.00 3.24
8060 8320 4.055360 GTTTTAGCACCACCAAAACATCC 58.945 43.478 4.71 0.00 40.32 3.51
8061 8321 4.688021 TGTTTTAGCACCACCAAAACATC 58.312 39.130 7.54 0.00 43.51 3.06
8062 8322 4.744795 TGTTTTAGCACCACCAAAACAT 57.255 36.364 7.54 0.00 43.51 2.71
8064 8324 3.807071 CCATGTTTTAGCACCACCAAAAC 59.193 43.478 0.00 0.00 40.76 2.43
8065 8325 3.706594 TCCATGTTTTAGCACCACCAAAA 59.293 39.130 0.00 0.00 0.00 2.44
8066 8326 3.068873 GTCCATGTTTTAGCACCACCAAA 59.931 43.478 0.00 0.00 0.00 3.28
8067 8327 2.625790 GTCCATGTTTTAGCACCACCAA 59.374 45.455 0.00 0.00 0.00 3.67
8068 8328 2.158534 AGTCCATGTTTTAGCACCACCA 60.159 45.455 0.00 0.00 0.00 4.17
8069 8329 2.488153 GAGTCCATGTTTTAGCACCACC 59.512 50.000 0.00 0.00 0.00 4.61
8070 8330 2.159627 CGAGTCCATGTTTTAGCACCAC 59.840 50.000 0.00 0.00 0.00 4.16
8071 8331 2.422597 CGAGTCCATGTTTTAGCACCA 58.577 47.619 0.00 0.00 0.00 4.17
8072 8332 1.130561 GCGAGTCCATGTTTTAGCACC 59.869 52.381 0.00 0.00 0.00 5.01
8073 8333 1.804151 TGCGAGTCCATGTTTTAGCAC 59.196 47.619 0.00 0.00 0.00 4.40
8074 8334 1.804151 GTGCGAGTCCATGTTTTAGCA 59.196 47.619 0.00 0.00 0.00 3.49
8075 8335 1.130561 GGTGCGAGTCCATGTTTTAGC 59.869 52.381 0.00 0.00 0.00 3.09
8140 8402 2.106477 GCTTTCCAGCAAGACTAGCT 57.894 50.000 0.00 0.00 46.49 3.32
8159 8422 2.890474 GCCACCGTATGCTGTCCG 60.890 66.667 0.00 0.00 0.00 4.79
8178 8441 0.234884 AGTACGAAACAAGCAAGCGC 59.765 50.000 0.00 0.00 38.99 5.92
8208 8471 4.237724 ACATTCTGCGTATATGATCGTGG 58.762 43.478 0.00 0.00 0.00 4.94
8267 8530 4.669318 TCTACTTGTAGAATTCTTCGGCG 58.331 43.478 14.36 0.00 34.02 6.46
8315 8578 3.619233 ACGGAGAACAATGGAAAAACG 57.381 42.857 0.00 0.00 0.00 3.60
8354 8617 7.604164 CAGTTTCACTTATTCCAGAGTGTATGT 59.396 37.037 3.73 0.00 42.90 2.29
8355 8618 7.413438 GCAGTTTCACTTATTCCAGAGTGTATG 60.413 40.741 3.73 1.40 42.90 2.39
8356 8619 6.595716 GCAGTTTCACTTATTCCAGAGTGTAT 59.404 38.462 3.73 0.00 42.90 2.29
8366 8629 3.193479 CCTTGGGGCAGTTTCACTTATTC 59.807 47.826 0.00 0.00 0.00 1.75
8396 8659 1.143813 AGATAGTGGGGGAATGCAGG 58.856 55.000 0.00 0.00 0.00 4.85
8405 8668 8.940397 AATTAATTGTCCAATAGATAGTGGGG 57.060 34.615 6.51 0.00 41.50 4.96
8548 9109 1.741528 ATGCTGCAATCACGTCATCA 58.258 45.000 6.36 0.00 0.00 3.07
8550 9111 3.581024 AAAATGCTGCAATCACGTCAT 57.419 38.095 6.36 0.00 0.00 3.06
8551 9112 4.700268 ATAAAATGCTGCAATCACGTCA 57.300 36.364 6.36 0.00 0.00 4.35
8552 9113 4.858692 ACAATAAAATGCTGCAATCACGTC 59.141 37.500 6.36 0.00 0.00 4.34
8553 9114 4.808558 ACAATAAAATGCTGCAATCACGT 58.191 34.783 6.36 0.00 0.00 4.49
8558 9119 5.943706 TGCAAACAATAAAATGCTGCAAT 57.056 30.435 6.36 0.00 38.66 3.56
8637 9199 2.169352 CAGGTAGGCAGTGTTATCAGCT 59.831 50.000 0.00 0.00 0.00 4.24
8682 9244 0.827925 TGCAGGACACTCGGAGTCTT 60.828 55.000 7.89 0.00 36.29 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.