Multiple sequence alignment - TraesCS7A01G087100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G087100 chr7A 100.000 2713 0 0 908 3620 51355036 51357748 0.000000e+00 5011.0
1 TraesCS7A01G087100 chr7A 100.000 281 0 0 1 281 51354129 51354409 1.490000e-143 520.0
2 TraesCS7A01G087100 chr7A 79.158 475 44 30 2687 3156 109371837 109371413 9.900000e-71 278.0
3 TraesCS7A01G087100 chr7A 83.278 299 22 14 2367 2638 109411149 109410852 2.160000e-62 250.0
4 TraesCS7A01G087100 chr7D 91.634 2056 121 29 1069 3084 48400185 48402229 0.000000e+00 2796.0
5 TraesCS7A01G087100 chr7D 93.095 840 48 1 1069 1908 48499865 48500694 0.000000e+00 1221.0
6 TraesCS7A01G087100 chr7D 87.158 366 38 8 2792 3155 104942767 104942409 1.210000e-109 407.0
7 TraesCS7A01G087100 chr7D 85.759 323 16 7 3277 3575 48402284 48402600 7.550000e-82 315.0
8 TraesCS7A01G087100 chr7D 82.069 290 22 14 2376 2638 104944335 104944049 1.690000e-53 220.0
9 TraesCS7A01G087100 chr7D 96.296 54 2 0 978 1031 48499825 48499878 4.980000e-14 89.8
10 TraesCS7A01G087100 chr7D 97.619 42 1 0 2710 2751 104942824 104942783 5.010000e-09 73.1
11 TraesCS7A01G087100 chr6D 75.465 1129 243 22 1099 2214 39492295 39493402 1.490000e-143 520.0
12 TraesCS7A01G087100 chr6D 92.929 99 6 1 3186 3284 31809955 31809858 3.770000e-30 143.0
13 TraesCS7A01G087100 chr7B 84.261 521 45 20 2638 3156 63633054 63632569 1.180000e-129 473.0
14 TraesCS7A01G087100 chr7B 81.533 287 25 9 2376 2638 63633393 63633111 1.020000e-50 211.0
15 TraesCS7A01G087100 chr7B 92.157 102 6 2 3184 3284 747744590 747744490 3.770000e-30 143.0
16 TraesCS7A01G087100 chr7B 84.211 133 16 3 3443 3575 333961003 333961130 1.360000e-24 124.0
17 TraesCS7A01G087100 chrUn 93.137 102 7 0 3183 3284 90076690 90076791 2.250000e-32 150.0
18 TraesCS7A01G087100 chr6B 92.929 99 7 0 3183 3281 396766014 396766112 1.050000e-30 145.0
19 TraesCS7A01G087100 chr3D 93.000 100 6 1 3184 3282 19333992 19334091 1.050000e-30 145.0
20 TraesCS7A01G087100 chr3D 83.465 127 14 5 3450 3575 552786401 552786281 1.060000e-20 111.0
21 TraesCS7A01G087100 chr3D 81.250 128 19 4 3450 3575 25315936 25315812 8.270000e-17 99.0
22 TraesCS7A01G087100 chr3B 92.233 103 7 1 3183 3284 828691483 828691585 1.050000e-30 145.0
23 TraesCS7A01G087100 chr5B 92.857 98 7 0 3183 3280 528379085 528379182 3.770000e-30 143.0
24 TraesCS7A01G087100 chr2D 91.346 104 8 1 3184 3286 423458951 423458848 1.360000e-29 141.0
25 TraesCS7A01G087100 chr2D 83.704 135 15 6 3442 3575 644373540 644373412 1.770000e-23 121.0
26 TraesCS7A01G087100 chr2B 89.189 111 10 2 3184 3294 534211204 534211096 1.750000e-28 137.0
27 TraesCS7A01G087100 chr4D 84.397 141 11 9 3437 3575 55271460 55271329 1.060000e-25 128.0
28 TraesCS7A01G087100 chr5D 83.582 134 17 3 3443 3575 264633640 264633511 1.770000e-23 121.0
29 TraesCS7A01G087100 chr6A 98.462 65 0 1 914 977 52316110 52316046 2.950000e-21 113.0
30 TraesCS7A01G087100 chr6A 100.000 38 0 0 219 256 52316227 52316190 1.800000e-08 71.3
31 TraesCS7A01G087100 chr1A 81.752 137 17 4 3443 3575 225515624 225515492 1.370000e-19 108.0
32 TraesCS7A01G087100 chr5A 91.781 73 6 0 3503 3575 595065124 595065196 6.390000e-18 102.0
33 TraesCS7A01G087100 chr2A 96.429 56 1 1 922 977 740464576 740464522 1.380000e-14 91.6
34 TraesCS7A01G087100 chr2A 100.000 42 0 0 216 257 740479324 740479283 1.080000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G087100 chr7A 51354129 51357748 3619 False 2765.500000 5011 100.000000 1 3620 2 chr7A.!!$F1 3619
1 TraesCS7A01G087100 chr7D 48400185 48402600 2415 False 1555.500000 2796 88.696500 1069 3575 2 chr7D.!!$F1 2506
2 TraesCS7A01G087100 chr7D 48499825 48500694 869 False 655.400000 1221 94.695500 978 1908 2 chr7D.!!$F2 930
3 TraesCS7A01G087100 chr7D 104942409 104944335 1926 True 233.366667 407 88.948667 2376 3155 3 chr7D.!!$R1 779
4 TraesCS7A01G087100 chr6D 39492295 39493402 1107 False 520.000000 520 75.465000 1099 2214 1 chr6D.!!$F1 1115
5 TraesCS7A01G087100 chr7B 63632569 63633393 824 True 342.000000 473 82.897000 2376 3156 2 chr7B.!!$R2 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 155 0.035739 AAACATCCTTACACGGGCGT 59.964 50.0 0.00 0.00 0.00 5.68 F
239 240 0.038983 TTGCTACACTTACGCGCAGA 60.039 50.0 5.73 0.00 31.63 4.26 F
250 251 0.100682 ACGCGCAGATTCTACGTGAT 59.899 50.0 22.91 7.69 40.34 3.06 F
1151 1152 0.389817 TGGATGAGAGGTTTGCGACG 60.390 55.0 0.00 0.00 0.00 5.12 F
1613 1617 0.391130 TGTACGGAATGCCTGCTGAC 60.391 55.0 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1254 0.107410 GGGCAATGTGTACCGATGGA 60.107 55.000 0.00 0.0 0.0 3.41 R
1613 1617 0.321919 CATCAGGCCGGTCATATGGG 60.322 60.000 9.71 0.0 0.0 4.00 R
2031 2038 0.753867 TGAAACGTCCTGCTACCACA 59.246 50.000 0.00 0.0 0.0 4.17 R
2368 2387 1.079405 ACAGGTTATCACACGGGCG 60.079 57.895 0.00 0.0 0.0 6.13 R
3598 4832 0.388649 GTATAGATGGGAGCACGCGG 60.389 60.000 12.47 0.0 0.0 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.645809 GGATCCACCTCAGCAACC 57.354 61.111 6.95 0.00 35.41 3.77
18 19 1.450312 GGATCCACCTCAGCAACCG 60.450 63.158 6.95 0.00 35.41 4.44
19 20 1.296715 GATCCACCTCAGCAACCGT 59.703 57.895 0.00 0.00 0.00 4.83
20 21 0.741221 GATCCACCTCAGCAACCGTC 60.741 60.000 0.00 0.00 0.00 4.79
21 22 1.480212 ATCCACCTCAGCAACCGTCA 61.480 55.000 0.00 0.00 0.00 4.35
22 23 1.961277 CCACCTCAGCAACCGTCAC 60.961 63.158 0.00 0.00 0.00 3.67
23 24 1.961277 CACCTCAGCAACCGTCACC 60.961 63.158 0.00 0.00 0.00 4.02
24 25 2.425592 CCTCAGCAACCGTCACCA 59.574 61.111 0.00 0.00 0.00 4.17
25 26 1.003355 CCTCAGCAACCGTCACCAT 60.003 57.895 0.00 0.00 0.00 3.55
26 27 1.021390 CCTCAGCAACCGTCACCATC 61.021 60.000 0.00 0.00 0.00 3.51
27 28 1.354337 CTCAGCAACCGTCACCATCG 61.354 60.000 0.00 0.00 0.00 3.84
28 29 1.374125 CAGCAACCGTCACCATCGA 60.374 57.895 0.00 0.00 0.00 3.59
29 30 1.374252 AGCAACCGTCACCATCGAC 60.374 57.895 0.00 0.00 0.00 4.20
35 36 4.787999 GTCACCATCGACGTCTCC 57.212 61.111 14.70 0.00 0.00 3.71
36 37 1.880894 GTCACCATCGACGTCTCCA 59.119 57.895 14.70 0.00 0.00 3.86
37 38 0.242825 GTCACCATCGACGTCTCCAA 59.757 55.000 14.70 0.00 0.00 3.53
38 39 0.526211 TCACCATCGACGTCTCCAAG 59.474 55.000 14.70 0.00 0.00 3.61
39 40 0.458543 CACCATCGACGTCTCCAAGG 60.459 60.000 14.70 10.44 0.00 3.61
40 41 1.519455 CCATCGACGTCTCCAAGGC 60.519 63.158 14.70 0.00 0.00 4.35
41 42 1.519455 CATCGACGTCTCCAAGGCC 60.519 63.158 14.70 0.00 0.00 5.19
42 43 3.064987 ATCGACGTCTCCAAGGCCG 62.065 63.158 14.70 0.00 0.00 6.13
46 47 4.821589 CGTCTCCAAGGCCGCCTC 62.822 72.222 13.72 0.00 30.89 4.70
47 48 4.475135 GTCTCCAAGGCCGCCTCC 62.475 72.222 13.72 0.00 30.89 4.30
49 50 4.033776 CTCCAAGGCCGCCTCCAA 62.034 66.667 13.72 0.00 30.89 3.53
50 51 4.344865 TCCAAGGCCGCCTCCAAC 62.345 66.667 13.72 0.00 30.89 3.77
51 52 4.659172 CCAAGGCCGCCTCCAACA 62.659 66.667 13.72 0.00 30.89 3.33
52 53 3.365265 CAAGGCCGCCTCCAACAC 61.365 66.667 13.72 0.00 30.89 3.32
53 54 4.660938 AAGGCCGCCTCCAACACC 62.661 66.667 13.72 0.00 30.89 4.16
57 58 4.263572 CCGCCTCCAACACCACCA 62.264 66.667 0.00 0.00 0.00 4.17
58 59 2.978010 CGCCTCCAACACCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
59 60 2.597510 GCCTCCAACACCACCACC 60.598 66.667 0.00 0.00 0.00 4.61
60 61 2.115266 CCTCCAACACCACCACCC 59.885 66.667 0.00 0.00 0.00 4.61
61 62 2.115266 CTCCAACACCACCACCCC 59.885 66.667 0.00 0.00 0.00 4.95
62 63 3.503839 TCCAACACCACCACCCCC 61.504 66.667 0.00 0.00 0.00 5.40
63 64 4.966787 CCAACACCACCACCCCCG 62.967 72.222 0.00 0.00 0.00 5.73
76 77 3.979497 CCCCGCCACCCTCCTTTT 61.979 66.667 0.00 0.00 0.00 2.27
77 78 2.361230 CCCGCCACCCTCCTTTTC 60.361 66.667 0.00 0.00 0.00 2.29
78 79 2.361230 CCGCCACCCTCCTTTTCC 60.361 66.667 0.00 0.00 0.00 3.13
79 80 2.434331 CGCCACCCTCCTTTTCCA 59.566 61.111 0.00 0.00 0.00 3.53
80 81 1.675641 CGCCACCCTCCTTTTCCAG 60.676 63.158 0.00 0.00 0.00 3.86
81 82 1.767692 GCCACCCTCCTTTTCCAGA 59.232 57.895 0.00 0.00 0.00 3.86
82 83 0.322906 GCCACCCTCCTTTTCCAGAG 60.323 60.000 0.00 0.00 0.00 3.35
83 84 1.362224 CCACCCTCCTTTTCCAGAGA 58.638 55.000 0.00 0.00 31.43 3.10
84 85 1.918957 CCACCCTCCTTTTCCAGAGAT 59.081 52.381 0.00 0.00 31.43 2.75
85 86 3.115390 CCACCCTCCTTTTCCAGAGATA 58.885 50.000 0.00 0.00 31.43 1.98
86 87 3.718956 CCACCCTCCTTTTCCAGAGATAT 59.281 47.826 0.00 0.00 31.43 1.63
87 88 4.445448 CCACCCTCCTTTTCCAGAGATATG 60.445 50.000 0.00 0.00 31.43 1.78
88 89 4.410228 CACCCTCCTTTTCCAGAGATATGA 59.590 45.833 0.00 0.00 31.43 2.15
89 90 5.039645 ACCCTCCTTTTCCAGAGATATGAA 58.960 41.667 0.00 0.00 31.43 2.57
90 91 5.131809 ACCCTCCTTTTCCAGAGATATGAAG 59.868 44.000 0.00 0.00 31.43 3.02
91 92 5.062528 CCTCCTTTTCCAGAGATATGAAGC 58.937 45.833 0.00 0.00 31.43 3.86
92 93 5.163216 CCTCCTTTTCCAGAGATATGAAGCT 60.163 44.000 0.00 0.00 31.43 3.74
93 94 5.678583 TCCTTTTCCAGAGATATGAAGCTG 58.321 41.667 0.00 0.00 0.00 4.24
94 95 5.190528 TCCTTTTCCAGAGATATGAAGCTGT 59.809 40.000 0.00 0.00 0.00 4.40
95 96 6.384015 TCCTTTTCCAGAGATATGAAGCTGTA 59.616 38.462 0.00 0.00 0.00 2.74
96 97 7.071698 TCCTTTTCCAGAGATATGAAGCTGTAT 59.928 37.037 0.00 0.00 0.00 2.29
97 98 7.718753 CCTTTTCCAGAGATATGAAGCTGTATT 59.281 37.037 0.00 0.00 0.00 1.89
98 99 9.118300 CTTTTCCAGAGATATGAAGCTGTATTT 57.882 33.333 0.00 0.00 0.00 1.40
99 100 9.466497 TTTTCCAGAGATATGAAGCTGTATTTT 57.534 29.630 0.00 0.00 0.00 1.82
100 101 8.668510 TTCCAGAGATATGAAGCTGTATTTTC 57.331 34.615 0.00 0.00 0.00 2.29
101 102 7.220030 TCCAGAGATATGAAGCTGTATTTTCC 58.780 38.462 0.00 0.00 0.00 3.13
102 103 6.146837 CCAGAGATATGAAGCTGTATTTTCCG 59.853 42.308 0.00 0.00 0.00 4.30
103 104 6.146837 CAGAGATATGAAGCTGTATTTTCCGG 59.853 42.308 0.00 0.00 0.00 5.14
104 105 5.930135 AGATATGAAGCTGTATTTTCCGGT 58.070 37.500 0.00 0.00 0.00 5.28
105 106 5.760253 AGATATGAAGCTGTATTTTCCGGTG 59.240 40.000 0.00 0.00 0.00 4.94
106 107 3.134574 TGAAGCTGTATTTTCCGGTGT 57.865 42.857 0.00 0.00 0.00 4.16
107 108 2.811431 TGAAGCTGTATTTTCCGGTGTG 59.189 45.455 0.00 0.00 0.00 3.82
108 109 1.165270 AGCTGTATTTTCCGGTGTGC 58.835 50.000 0.00 0.00 0.00 4.57
109 110 1.165270 GCTGTATTTTCCGGTGTGCT 58.835 50.000 0.00 0.00 0.00 4.40
110 111 1.130561 GCTGTATTTTCCGGTGTGCTC 59.869 52.381 0.00 0.00 0.00 4.26
111 112 2.422597 CTGTATTTTCCGGTGTGCTCA 58.577 47.619 0.00 0.00 0.00 4.26
112 113 2.811431 CTGTATTTTCCGGTGTGCTCAA 59.189 45.455 0.00 0.00 0.00 3.02
113 114 3.215151 TGTATTTTCCGGTGTGCTCAAA 58.785 40.909 0.00 0.00 0.00 2.69
114 115 3.252215 TGTATTTTCCGGTGTGCTCAAAG 59.748 43.478 0.00 0.00 0.00 2.77
115 116 2.045561 TTTTCCGGTGTGCTCAAAGA 57.954 45.000 0.00 0.00 0.00 2.52
116 117 2.045561 TTTCCGGTGTGCTCAAAGAA 57.954 45.000 0.00 0.00 0.00 2.52
117 118 2.270352 TTCCGGTGTGCTCAAAGAAT 57.730 45.000 0.00 0.00 0.00 2.40
118 119 3.410631 TTCCGGTGTGCTCAAAGAATA 57.589 42.857 0.00 0.00 0.00 1.75
119 120 3.410631 TCCGGTGTGCTCAAAGAATAA 57.589 42.857 0.00 0.00 0.00 1.40
120 121 3.334691 TCCGGTGTGCTCAAAGAATAAG 58.665 45.455 0.00 0.00 0.00 1.73
121 122 2.159517 CCGGTGTGCTCAAAGAATAAGC 60.160 50.000 0.00 0.00 36.56 3.09
122 123 2.483877 CGGTGTGCTCAAAGAATAAGCA 59.516 45.455 0.00 0.00 43.40 3.91
123 124 3.425359 CGGTGTGCTCAAAGAATAAGCAG 60.425 47.826 0.00 0.00 45.99 4.24
124 125 3.753272 GGTGTGCTCAAAGAATAAGCAGA 59.247 43.478 0.00 0.00 45.99 4.26
125 126 4.216257 GGTGTGCTCAAAGAATAAGCAGAA 59.784 41.667 0.00 0.00 45.99 3.02
126 127 5.149977 GTGTGCTCAAAGAATAAGCAGAAC 58.850 41.667 0.00 0.00 45.99 3.01
127 128 4.216257 TGTGCTCAAAGAATAAGCAGAACC 59.784 41.667 0.00 0.00 45.99 3.62
128 129 4.457257 GTGCTCAAAGAATAAGCAGAACCT 59.543 41.667 0.00 0.00 45.99 3.50
129 130 5.643777 GTGCTCAAAGAATAAGCAGAACCTA 59.356 40.000 0.00 0.00 45.99 3.08
130 131 5.877012 TGCTCAAAGAATAAGCAGAACCTAG 59.123 40.000 0.00 0.00 40.91 3.02
131 132 5.220758 GCTCAAAGAATAAGCAGAACCTAGC 60.221 44.000 0.00 0.00 36.06 3.42
132 133 5.804639 TCAAAGAATAAGCAGAACCTAGCA 58.195 37.500 0.00 0.00 0.00 3.49
133 134 5.877012 TCAAAGAATAAGCAGAACCTAGCAG 59.123 40.000 0.00 0.00 0.00 4.24
134 135 5.428184 AAGAATAAGCAGAACCTAGCAGT 57.572 39.130 0.00 0.00 0.00 4.40
135 136 6.546428 AAGAATAAGCAGAACCTAGCAGTA 57.454 37.500 0.00 0.00 0.00 2.74
136 137 6.546428 AGAATAAGCAGAACCTAGCAGTAA 57.454 37.500 0.00 0.00 0.00 2.24
137 138 6.947464 AGAATAAGCAGAACCTAGCAGTAAA 58.053 36.000 0.00 0.00 0.00 2.01
138 139 6.819146 AGAATAAGCAGAACCTAGCAGTAAAC 59.181 38.462 0.00 0.00 0.00 2.01
139 140 4.351874 AAGCAGAACCTAGCAGTAAACA 57.648 40.909 0.00 0.00 0.00 2.83
140 141 4.559862 AGCAGAACCTAGCAGTAAACAT 57.440 40.909 0.00 0.00 0.00 2.71
141 142 4.508662 AGCAGAACCTAGCAGTAAACATC 58.491 43.478 0.00 0.00 0.00 3.06
142 143 3.623510 GCAGAACCTAGCAGTAAACATCC 59.376 47.826 0.00 0.00 0.00 3.51
143 144 4.624125 GCAGAACCTAGCAGTAAACATCCT 60.624 45.833 0.00 0.00 0.00 3.24
144 145 5.491982 CAGAACCTAGCAGTAAACATCCTT 58.508 41.667 0.00 0.00 0.00 3.36
145 146 6.640518 CAGAACCTAGCAGTAAACATCCTTA 58.359 40.000 0.00 0.00 0.00 2.69
146 147 6.535508 CAGAACCTAGCAGTAAACATCCTTAC 59.464 42.308 0.00 0.00 32.84 2.34
147 148 6.212791 AGAACCTAGCAGTAAACATCCTTACA 59.787 38.462 0.00 0.00 34.75 2.41
148 149 5.731591 ACCTAGCAGTAAACATCCTTACAC 58.268 41.667 0.00 0.00 34.75 2.90
149 150 4.804139 CCTAGCAGTAAACATCCTTACACG 59.196 45.833 0.00 0.00 34.75 4.49
150 151 3.596214 AGCAGTAAACATCCTTACACGG 58.404 45.455 0.00 0.00 34.75 4.94
151 152 2.676342 GCAGTAAACATCCTTACACGGG 59.324 50.000 0.00 0.00 34.75 5.28
152 153 2.676342 CAGTAAACATCCTTACACGGGC 59.324 50.000 0.00 0.00 34.75 6.13
153 154 1.662122 GTAAACATCCTTACACGGGCG 59.338 52.381 0.00 0.00 32.91 6.13
154 155 0.035739 AAACATCCTTACACGGGCGT 59.964 50.000 0.00 0.00 0.00 5.68
155 156 0.896923 AACATCCTTACACGGGCGTA 59.103 50.000 0.00 0.00 0.00 4.42
156 157 0.896923 ACATCCTTACACGGGCGTAA 59.103 50.000 0.00 0.00 0.00 3.18
157 158 1.483415 ACATCCTTACACGGGCGTAAT 59.517 47.619 0.00 0.00 31.19 1.89
158 159 2.132762 CATCCTTACACGGGCGTAATC 58.867 52.381 0.00 0.00 31.19 1.75
159 160 1.184431 TCCTTACACGGGCGTAATCA 58.816 50.000 0.00 0.00 31.19 2.57
160 161 1.135024 TCCTTACACGGGCGTAATCAC 60.135 52.381 0.00 0.00 31.19 3.06
175 176 5.012328 GTAATCACGATTCCCTTCTCACT 57.988 43.478 0.00 0.00 32.50 3.41
176 177 4.559862 AATCACGATTCCCTTCTCACTT 57.440 40.909 0.00 0.00 0.00 3.16
177 178 3.594603 TCACGATTCCCTTCTCACTTC 57.405 47.619 0.00 0.00 0.00 3.01
178 179 3.165875 TCACGATTCCCTTCTCACTTCT 58.834 45.455 0.00 0.00 0.00 2.85
179 180 3.578716 TCACGATTCCCTTCTCACTTCTT 59.421 43.478 0.00 0.00 0.00 2.52
180 181 3.681897 CACGATTCCCTTCTCACTTCTTG 59.318 47.826 0.00 0.00 0.00 3.02
181 182 3.578716 ACGATTCCCTTCTCACTTCTTGA 59.421 43.478 0.00 0.00 0.00 3.02
182 183 3.929610 CGATTCCCTTCTCACTTCTTGAC 59.070 47.826 0.00 0.00 0.00 3.18
183 184 4.322349 CGATTCCCTTCTCACTTCTTGACT 60.322 45.833 0.00 0.00 0.00 3.41
184 185 5.555966 GATTCCCTTCTCACTTCTTGACTT 58.444 41.667 0.00 0.00 0.00 3.01
185 186 4.608948 TCCCTTCTCACTTCTTGACTTC 57.391 45.455 0.00 0.00 0.00 3.01
186 187 4.227197 TCCCTTCTCACTTCTTGACTTCT 58.773 43.478 0.00 0.00 0.00 2.85
187 188 4.656112 TCCCTTCTCACTTCTTGACTTCTT 59.344 41.667 0.00 0.00 0.00 2.52
188 189 4.754114 CCCTTCTCACTTCTTGACTTCTTG 59.246 45.833 0.00 0.00 0.00 3.02
189 190 5.363939 CCTTCTCACTTCTTGACTTCTTGT 58.636 41.667 0.00 0.00 0.00 3.16
190 191 5.236047 CCTTCTCACTTCTTGACTTCTTGTG 59.764 44.000 0.00 0.00 0.00 3.33
191 192 4.697514 TCTCACTTCTTGACTTCTTGTGG 58.302 43.478 0.00 0.00 0.00 4.17
192 193 4.162320 TCTCACTTCTTGACTTCTTGTGGT 59.838 41.667 0.00 0.00 0.00 4.16
193 194 4.191544 TCACTTCTTGACTTCTTGTGGTG 58.808 43.478 0.00 0.00 0.00 4.17
194 195 3.313526 CACTTCTTGACTTCTTGTGGTGG 59.686 47.826 0.00 0.00 0.00 4.61
195 196 2.638480 TCTTGACTTCTTGTGGTGGG 57.362 50.000 0.00 0.00 0.00 4.61
196 197 0.954452 CTTGACTTCTTGTGGTGGGC 59.046 55.000 0.00 0.00 0.00 5.36
197 198 0.550914 TTGACTTCTTGTGGTGGGCT 59.449 50.000 0.00 0.00 0.00 5.19
198 199 0.108585 TGACTTCTTGTGGTGGGCTC 59.891 55.000 0.00 0.00 0.00 4.70
199 200 0.398318 GACTTCTTGTGGTGGGCTCT 59.602 55.000 0.00 0.00 0.00 4.09
200 201 0.846693 ACTTCTTGTGGTGGGCTCTT 59.153 50.000 0.00 0.00 0.00 2.85
201 202 2.038557 GACTTCTTGTGGTGGGCTCTTA 59.961 50.000 0.00 0.00 0.00 2.10
202 203 2.644798 ACTTCTTGTGGTGGGCTCTTAT 59.355 45.455 0.00 0.00 0.00 1.73
203 204 3.844211 ACTTCTTGTGGTGGGCTCTTATA 59.156 43.478 0.00 0.00 0.00 0.98
204 205 4.475016 ACTTCTTGTGGTGGGCTCTTATAT 59.525 41.667 0.00 0.00 0.00 0.86
205 206 5.665812 ACTTCTTGTGGTGGGCTCTTATATA 59.334 40.000 0.00 0.00 0.00 0.86
206 207 6.330250 ACTTCTTGTGGTGGGCTCTTATATAT 59.670 38.462 0.00 0.00 0.00 0.86
207 208 6.763715 TCTTGTGGTGGGCTCTTATATATT 57.236 37.500 0.00 0.00 0.00 1.28
208 209 7.865530 TCTTGTGGTGGGCTCTTATATATTA 57.134 36.000 0.00 0.00 0.00 0.98
209 210 7.907389 TCTTGTGGTGGGCTCTTATATATTAG 58.093 38.462 0.00 0.00 0.00 1.73
210 211 7.512746 TCTTGTGGTGGGCTCTTATATATTAGT 59.487 37.037 0.00 0.00 0.00 2.24
211 212 7.626999 TGTGGTGGGCTCTTATATATTAGTT 57.373 36.000 0.00 0.00 0.00 2.24
212 213 7.450074 TGTGGTGGGCTCTTATATATTAGTTG 58.550 38.462 0.00 0.00 0.00 3.16
213 214 7.291416 TGTGGTGGGCTCTTATATATTAGTTGA 59.709 37.037 0.00 0.00 0.00 3.18
214 215 7.819900 GTGGTGGGCTCTTATATATTAGTTGAG 59.180 40.741 0.00 0.00 0.00 3.02
215 216 7.038302 TGGTGGGCTCTTATATATTAGTTGAGG 60.038 40.741 0.00 0.00 0.00 3.86
216 217 7.180408 GGTGGGCTCTTATATATTAGTTGAGGA 59.820 40.741 0.00 0.00 0.00 3.71
217 218 8.254508 GTGGGCTCTTATATATTAGTTGAGGAG 58.745 40.741 0.00 0.00 0.00 3.69
218 219 7.956315 TGGGCTCTTATATATTAGTTGAGGAGT 59.044 37.037 0.00 0.00 0.00 3.85
219 220 8.817876 GGGCTCTTATATATTAGTTGAGGAGTT 58.182 37.037 0.00 0.00 0.00 3.01
228 229 6.803154 ATTAGTTGAGGAGTTTTGCTACAC 57.197 37.500 0.00 0.00 0.00 2.90
229 230 4.423625 AGTTGAGGAGTTTTGCTACACT 57.576 40.909 0.00 0.00 0.00 3.55
230 231 4.781934 AGTTGAGGAGTTTTGCTACACTT 58.218 39.130 0.00 0.00 0.00 3.16
231 232 5.925509 AGTTGAGGAGTTTTGCTACACTTA 58.074 37.500 0.00 0.00 0.00 2.24
232 233 5.758784 AGTTGAGGAGTTTTGCTACACTTAC 59.241 40.000 0.00 0.00 0.00 2.34
233 234 4.304110 TGAGGAGTTTTGCTACACTTACG 58.696 43.478 0.00 0.00 0.00 3.18
234 235 3.064931 AGGAGTTTTGCTACACTTACGC 58.935 45.455 0.00 0.00 0.00 4.42
235 236 2.159881 GGAGTTTTGCTACACTTACGCG 60.160 50.000 3.53 3.53 0.00 6.01
236 237 1.193874 AGTTTTGCTACACTTACGCGC 59.806 47.619 5.73 0.00 0.00 6.86
237 238 1.070443 GTTTTGCTACACTTACGCGCA 60.070 47.619 5.73 0.00 0.00 6.09
238 239 0.787787 TTTGCTACACTTACGCGCAG 59.212 50.000 5.73 4.92 31.63 5.18
239 240 0.038983 TTGCTACACTTACGCGCAGA 60.039 50.000 5.73 0.00 31.63 4.26
240 241 0.172578 TGCTACACTTACGCGCAGAT 59.827 50.000 5.73 0.00 0.00 2.90
241 242 1.278238 GCTACACTTACGCGCAGATT 58.722 50.000 5.73 0.00 0.00 2.40
242 243 1.255600 GCTACACTTACGCGCAGATTC 59.744 52.381 5.73 0.00 0.00 2.52
243 244 2.798680 CTACACTTACGCGCAGATTCT 58.201 47.619 5.73 0.00 0.00 2.40
244 245 2.933495 ACACTTACGCGCAGATTCTA 57.067 45.000 5.73 0.00 0.00 2.10
245 246 2.527100 ACACTTACGCGCAGATTCTAC 58.473 47.619 5.73 0.00 0.00 2.59
246 247 1.513178 CACTTACGCGCAGATTCTACG 59.487 52.381 5.73 1.81 0.00 3.51
247 248 1.131883 ACTTACGCGCAGATTCTACGT 59.868 47.619 5.73 10.10 40.53 3.57
248 249 1.513178 CTTACGCGCAGATTCTACGTG 59.487 52.381 16.28 16.28 42.64 4.49
249 250 0.728542 TACGCGCAGATTCTACGTGA 59.271 50.000 22.91 7.21 40.34 4.35
250 251 0.100682 ACGCGCAGATTCTACGTGAT 59.899 50.000 22.91 7.69 40.34 3.06
251 252 0.500178 CGCGCAGATTCTACGTGATG 59.500 55.000 13.35 0.00 39.54 3.07
252 253 1.560923 GCGCAGATTCTACGTGATGT 58.439 50.000 0.30 0.00 0.00 3.06
253 254 1.927174 GCGCAGATTCTACGTGATGTT 59.073 47.619 0.30 0.00 0.00 2.71
254 255 2.348666 GCGCAGATTCTACGTGATGTTT 59.651 45.455 0.30 0.00 0.00 2.83
255 256 3.782250 GCGCAGATTCTACGTGATGTTTG 60.782 47.826 0.30 0.00 0.00 2.93
256 257 3.242091 CGCAGATTCTACGTGATGTTTGG 60.242 47.826 0.00 0.00 0.00 3.28
257 258 3.932710 GCAGATTCTACGTGATGTTTGGA 59.067 43.478 0.00 0.00 0.00 3.53
258 259 4.033358 GCAGATTCTACGTGATGTTTGGAG 59.967 45.833 0.00 0.00 0.00 3.86
259 260 5.171476 CAGATTCTACGTGATGTTTGGAGT 58.829 41.667 0.00 0.00 0.00 3.85
260 261 5.639506 CAGATTCTACGTGATGTTTGGAGTT 59.360 40.000 0.00 0.00 0.00 3.01
261 262 6.147821 CAGATTCTACGTGATGTTTGGAGTTT 59.852 38.462 0.00 0.00 0.00 2.66
262 263 5.666969 TTCTACGTGATGTTTGGAGTTTG 57.333 39.130 0.00 0.00 0.00 2.93
263 264 4.062293 TCTACGTGATGTTTGGAGTTTGG 58.938 43.478 0.00 0.00 0.00 3.28
264 265 2.650322 ACGTGATGTTTGGAGTTTGGT 58.350 42.857 0.00 0.00 0.00 3.67
265 266 3.020984 ACGTGATGTTTGGAGTTTGGTT 58.979 40.909 0.00 0.00 0.00 3.67
266 267 4.200874 ACGTGATGTTTGGAGTTTGGTTA 58.799 39.130 0.00 0.00 0.00 2.85
267 268 4.035909 ACGTGATGTTTGGAGTTTGGTTAC 59.964 41.667 0.00 0.00 0.00 2.50
268 269 4.533222 GTGATGTTTGGAGTTTGGTTACG 58.467 43.478 0.00 0.00 0.00 3.18
269 270 3.566322 TGATGTTTGGAGTTTGGTTACGG 59.434 43.478 0.00 0.00 0.00 4.02
270 271 3.278668 TGTTTGGAGTTTGGTTACGGA 57.721 42.857 0.00 0.00 0.00 4.69
271 272 2.944349 TGTTTGGAGTTTGGTTACGGAC 59.056 45.455 0.00 0.00 0.00 4.79
272 273 3.208594 GTTTGGAGTTTGGTTACGGACT 58.791 45.455 0.00 0.00 0.00 3.85
273 274 2.536761 TGGAGTTTGGTTACGGACTG 57.463 50.000 0.00 0.00 0.00 3.51
274 275 2.040939 TGGAGTTTGGTTACGGACTGA 58.959 47.619 0.00 0.00 0.00 3.41
275 276 2.224113 TGGAGTTTGGTTACGGACTGAC 60.224 50.000 0.00 0.00 0.00 3.51
276 277 2.056577 GAGTTTGGTTACGGACTGACG 58.943 52.381 0.00 0.00 40.31 4.35
931 932 7.476540 GGGATATTTGTTAGGAAAAGGTTGT 57.523 36.000 0.00 0.00 0.00 3.32
932 933 7.544622 GGGATATTTGTTAGGAAAAGGTTGTC 58.455 38.462 0.00 0.00 0.00 3.18
933 934 7.363530 GGGATATTTGTTAGGAAAAGGTTGTCC 60.364 40.741 0.00 0.00 0.00 4.02
934 935 4.904253 TTTGTTAGGAAAAGGTTGTCCG 57.096 40.909 0.00 0.00 39.06 4.79
935 936 3.564053 TGTTAGGAAAAGGTTGTCCGT 57.436 42.857 0.00 0.00 39.06 4.69
936 937 4.686191 TGTTAGGAAAAGGTTGTCCGTA 57.314 40.909 0.00 0.00 39.06 4.02
937 938 4.634199 TGTTAGGAAAAGGTTGTCCGTAG 58.366 43.478 0.00 0.00 39.06 3.51
938 939 2.180432 AGGAAAAGGTTGTCCGTAGC 57.820 50.000 0.00 0.00 39.06 3.58
939 940 1.162698 GGAAAAGGTTGTCCGTAGCC 58.837 55.000 0.00 0.00 39.05 3.93
940 941 1.271217 GGAAAAGGTTGTCCGTAGCCT 60.271 52.381 0.00 0.00 39.05 4.58
941 942 1.804748 GAAAAGGTTGTCCGTAGCCTG 59.195 52.381 0.00 0.00 39.05 4.85
942 943 0.605589 AAAGGTTGTCCGTAGCCTGC 60.606 55.000 0.00 0.00 39.05 4.85
943 944 1.764571 AAGGTTGTCCGTAGCCTGCA 61.765 55.000 0.00 0.00 39.05 4.41
944 945 1.741770 GGTTGTCCGTAGCCTGCAG 60.742 63.158 6.78 6.78 0.00 4.41
945 946 2.047274 TTGTCCGTAGCCTGCAGC 60.047 61.111 8.66 3.91 44.25 5.25
946 947 3.605749 TTGTCCGTAGCCTGCAGCC 62.606 63.158 8.66 0.00 45.47 4.85
947 948 4.840005 GTCCGTAGCCTGCAGCCC 62.840 72.222 8.66 0.77 45.47 5.19
950 951 3.833645 CGTAGCCTGCAGCCCGTA 61.834 66.667 8.66 0.00 45.47 4.02
951 952 2.582436 GTAGCCTGCAGCCCGTAA 59.418 61.111 8.66 0.00 45.47 3.18
952 953 1.814169 GTAGCCTGCAGCCCGTAAC 60.814 63.158 8.66 0.00 45.47 2.50
953 954 1.987855 TAGCCTGCAGCCCGTAACT 60.988 57.895 8.66 0.00 45.47 2.24
954 955 2.238847 TAGCCTGCAGCCCGTAACTG 62.239 60.000 8.66 0.00 45.47 3.16
955 956 2.436646 CCTGCAGCCCGTAACTGG 60.437 66.667 8.66 0.00 35.62 4.00
956 957 2.347490 CTGCAGCCCGTAACTGGT 59.653 61.111 0.00 0.00 35.62 4.00
957 958 1.741770 CTGCAGCCCGTAACTGGTC 60.742 63.158 0.00 0.00 35.62 4.02
958 959 2.436115 GCAGCCCGTAACTGGTCC 60.436 66.667 0.00 0.00 35.62 4.46
959 960 2.125673 CAGCCCGTAACTGGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
960 961 2.602568 AGCCCGTAACTGGTCCGT 60.603 61.111 0.00 0.00 0.00 4.69
961 962 1.304381 AGCCCGTAACTGGTCCGTA 60.304 57.895 0.00 0.00 0.00 4.02
962 963 1.140375 GCCCGTAACTGGTCCGTAG 59.860 63.158 0.00 0.00 0.00 3.51
986 987 5.469084 GGTCTAGAATTTTCGTTGGTTGAGT 59.531 40.000 0.00 0.00 0.00 3.41
1020 1021 5.950544 TCCTATATATTTCGTCCCCATGG 57.049 43.478 4.14 4.14 0.00 3.66
1021 1022 5.595770 TCCTATATATTTCGTCCCCATGGA 58.404 41.667 15.22 0.00 38.75 3.41
1030 1031 3.180449 TCCCCATGGACAACTCAGT 57.820 52.632 15.22 0.00 35.03 3.41
1031 1032 0.984230 TCCCCATGGACAACTCAGTC 59.016 55.000 15.22 0.00 35.03 3.51
1032 1033 0.692476 CCCCATGGACAACTCAGTCA 59.308 55.000 15.22 0.00 40.29 3.41
1033 1034 1.283029 CCCCATGGACAACTCAGTCAT 59.717 52.381 15.22 0.00 40.29 3.06
1034 1035 2.291153 CCCCATGGACAACTCAGTCATT 60.291 50.000 15.22 0.00 40.29 2.57
1035 1036 3.054434 CCCCATGGACAACTCAGTCATTA 60.054 47.826 15.22 0.00 40.29 1.90
1036 1037 4.194640 CCCATGGACAACTCAGTCATTAG 58.805 47.826 15.22 0.00 40.29 1.73
1037 1038 4.080919 CCCATGGACAACTCAGTCATTAGA 60.081 45.833 15.22 0.00 40.29 2.10
1038 1039 5.397221 CCCATGGACAACTCAGTCATTAGAT 60.397 44.000 15.22 0.00 40.29 1.98
1039 1040 5.526479 CCATGGACAACTCAGTCATTAGATG 59.474 44.000 5.56 0.00 40.29 2.90
1040 1041 6.343703 CATGGACAACTCAGTCATTAGATGA 58.656 40.000 0.00 0.00 40.29 2.92
1056 1057 9.973661 TCATTAGATGACCTCCTTTTCAAATAA 57.026 29.630 0.00 0.00 33.59 1.40
1151 1152 0.389817 TGGATGAGAGGTTTGCGACG 60.390 55.000 0.00 0.00 0.00 5.12
1207 1208 0.753867 GAGGAGCTTAGGGTGCTACC 59.246 60.000 0.00 0.00 42.10 3.18
1208 1209 1.043673 AGGAGCTTAGGGTGCTACCG 61.044 60.000 0.00 0.00 42.10 4.02
1253 1254 0.620556 ATGTTTGGTGCGATCCCTCT 59.379 50.000 0.00 0.00 0.00 3.69
1374 1375 7.148255 GGTTTGCTCATATACACAACAGATTCA 60.148 37.037 0.00 0.00 0.00 2.57
1431 1432 8.821686 ATGTTACATGATTGAGGTATGGAAAA 57.178 30.769 0.00 0.00 0.00 2.29
1436 1437 4.016444 TGATTGAGGTATGGAAAACAGCC 58.984 43.478 0.00 0.00 0.00 4.85
1437 1438 3.517296 TTGAGGTATGGAAAACAGCCA 57.483 42.857 0.00 0.00 40.24 4.75
1542 1546 4.097135 TGGATGTTGCCATAAATAACACCG 59.903 41.667 0.00 0.00 37.17 4.94
1591 1595 3.535561 AGACCTTTGAATATGCACTCGG 58.464 45.455 0.00 0.00 0.00 4.63
1613 1617 0.391130 TGTACGGAATGCCTGCTGAC 60.391 55.000 0.00 0.00 0.00 3.51
1634 1638 1.609061 CCATATGACCGGCCTGATGTC 60.609 57.143 0.00 2.89 0.00 3.06
1642 1646 1.220749 GGCCTGATGTCGTGGCTAA 59.779 57.895 13.74 0.00 45.45 3.09
1667 1671 3.321396 TGATCTTTGAACCTTGCATGCAA 59.679 39.130 30.12 30.12 0.00 4.08
1821 1828 1.697432 TGTCCCATAATAAGCTCCCCG 59.303 52.381 0.00 0.00 0.00 5.73
1892 1899 1.651737 TCTTCATGGAAGACGGGGAA 58.348 50.000 4.64 0.00 42.78 3.97
1897 1904 2.041081 TCATGGAAGACGGGGAACAAAT 59.959 45.455 0.00 0.00 0.00 2.32
1925 1932 6.377146 TGAGTGTGAAAGTAAGGAAAGCTTTT 59.623 34.615 14.05 0.00 33.22 2.27
1933 1940 5.201243 AGTAAGGAAAGCTTTTTGTCCTGT 58.799 37.500 16.43 10.13 39.65 4.00
1986 1993 7.500892 TGGAGTACATTAGACATGTTGTGTTTT 59.499 33.333 10.49 2.02 42.36 2.43
2009 2016 1.283613 TGGTTTGGACACTGTGAGGTT 59.716 47.619 15.86 0.00 0.00 3.50
2031 2038 2.303311 CCCGGGAAAGAAGAGAAGAGTT 59.697 50.000 18.48 0.00 0.00 3.01
2064 2074 4.058817 GACGTTTCACAAGATGGAAGAGT 58.941 43.478 0.00 0.00 0.00 3.24
2070 2080 5.488262 TCACAAGATGGAAGAGTTCATCA 57.512 39.130 0.00 0.00 41.45 3.07
2071 2081 6.058553 TCACAAGATGGAAGAGTTCATCAT 57.941 37.500 0.00 0.00 41.45 2.45
2092 2102 5.357878 TCATTGATTATGAAAGTGGTGCTCC 59.642 40.000 0.00 0.00 40.29 4.70
2229 2239 8.934697 TGTAGGAGTACATGATATAAAGCCTTT 58.065 33.333 0.00 0.00 34.02 3.11
2255 2265 7.512992 AGGGATCATGTCTCCTTTTACTTATG 58.487 38.462 14.13 0.00 33.05 1.90
2277 2291 3.706086 GCCTTTGGGGATCACAATATGTT 59.294 43.478 0.00 0.00 37.23 2.71
2328 2347 8.299570 GCTATTTACTACGGGTGTAAGCTATTA 58.700 37.037 0.00 0.00 32.43 0.98
2384 2403 2.125269 GCGCCCGTGTGATAACCT 60.125 61.111 0.00 0.00 0.00 3.50
2411 2431 7.227512 GTGGCTAATTGAGTTATAGCTTGATGT 59.772 37.037 0.00 0.00 41.35 3.06
2428 2448 6.034256 GCTTGATGTGTTATTGTTCAGATTGC 59.966 38.462 0.00 0.00 0.00 3.56
2473 2493 5.842907 GGGGGTGAATGATAAAGCATAAAC 58.157 41.667 0.00 0.00 0.00 2.01
2753 3962 9.624697 AACATGCTACATGTTTAAAATACAGTG 57.375 29.630 17.82 0.00 38.97 3.66
2859 4068 7.751732 TCAACTACATGCTTAAAATACTGCAG 58.248 34.615 13.48 13.48 38.87 4.41
2965 4175 2.094906 GGAGGATAACAAACGGCCAAAC 60.095 50.000 2.24 0.00 0.00 2.93
3029 4239 0.108945 GGTGATGCCTTTCTGCAAGC 60.109 55.000 0.00 0.00 45.84 4.01
3095 4305 9.998106 AGAGTAATTGCTACTTACAGAAAAGAA 57.002 29.630 0.00 0.00 41.17 2.52
3152 4362 0.792640 CCACACTGAAGCGCTACAAG 59.207 55.000 12.05 11.53 0.00 3.16
3184 4394 7.497925 AAGTTTCTCTTCGCAGAAAGTAATT 57.502 32.000 10.35 0.00 42.73 1.40
3185 4395 7.123160 AGTTTCTCTTCGCAGAAAGTAATTC 57.877 36.000 8.91 0.00 42.06 2.17
3186 4396 6.147985 AGTTTCTCTTCGCAGAAAGTAATTCC 59.852 38.462 8.91 0.00 42.06 3.01
3188 4398 5.411781 TCTCTTCGCAGAAAGTAATTCCTC 58.588 41.667 0.00 0.00 45.90 3.71
3189 4399 5.186021 TCTCTTCGCAGAAAGTAATTCCTCT 59.814 40.000 0.00 0.00 45.90 3.69
3190 4400 5.411781 TCTTCGCAGAAAGTAATTCCTCTC 58.588 41.667 0.00 0.00 45.90 3.20
3191 4401 5.186021 TCTTCGCAGAAAGTAATTCCTCTCT 59.814 40.000 0.00 0.00 45.90 3.10
3193 4403 5.794894 TCGCAGAAAGTAATTCCTCTCTTT 58.205 37.500 0.00 0.00 38.94 2.52
3194 4404 5.869888 TCGCAGAAAGTAATTCCTCTCTTTC 59.130 40.000 7.99 7.99 43.16 2.62
3207 4417 8.820153 ATTCCTCTCTTTCTTCATTTATTGCT 57.180 30.769 0.00 0.00 0.00 3.91
3208 4418 8.641498 TTCCTCTCTTTCTTCATTTATTGCTT 57.359 30.769 0.00 0.00 0.00 3.91
3209 4419 8.048534 TCCTCTCTTTCTTCATTTATTGCTTG 57.951 34.615 0.00 0.00 0.00 4.01
3210 4420 6.750963 CCTCTCTTTCTTCATTTATTGCTTGC 59.249 38.462 0.00 0.00 0.00 4.01
3211 4421 6.624423 TCTCTTTCTTCATTTATTGCTTGCC 58.376 36.000 0.00 0.00 0.00 4.52
3212 4422 6.209192 TCTCTTTCTTCATTTATTGCTTGCCA 59.791 34.615 0.00 0.00 0.00 4.92
3213 4423 6.158598 TCTTTCTTCATTTATTGCTTGCCAC 58.841 36.000 0.00 0.00 0.00 5.01
3214 4424 5.465532 TTCTTCATTTATTGCTTGCCACA 57.534 34.783 0.00 0.00 0.00 4.17
3215 4425 5.664294 TCTTCATTTATTGCTTGCCACAT 57.336 34.783 0.00 0.00 0.00 3.21
3216 4426 5.653507 TCTTCATTTATTGCTTGCCACATC 58.346 37.500 0.00 0.00 0.00 3.06
3217 4427 4.031418 TCATTTATTGCTTGCCACATCG 57.969 40.909 0.00 0.00 0.00 3.84
3218 4428 3.443329 TCATTTATTGCTTGCCACATCGT 59.557 39.130 0.00 0.00 0.00 3.73
3219 4429 3.485947 TTTATTGCTTGCCACATCGTC 57.514 42.857 0.00 0.00 0.00 4.20
3220 4430 2.401583 TATTGCTTGCCACATCGTCT 57.598 45.000 0.00 0.00 0.00 4.18
3221 4431 2.401583 ATTGCTTGCCACATCGTCTA 57.598 45.000 0.00 0.00 0.00 2.59
3222 4432 2.401583 TTGCTTGCCACATCGTCTAT 57.598 45.000 0.00 0.00 0.00 1.98
3223 4433 2.401583 TGCTTGCCACATCGTCTATT 57.598 45.000 0.00 0.00 0.00 1.73
3224 4434 2.710377 TGCTTGCCACATCGTCTATTT 58.290 42.857 0.00 0.00 0.00 1.40
3225 4435 3.081061 TGCTTGCCACATCGTCTATTTT 58.919 40.909 0.00 0.00 0.00 1.82
3226 4436 4.257731 TGCTTGCCACATCGTCTATTTTA 58.742 39.130 0.00 0.00 0.00 1.52
3227 4437 4.881273 TGCTTGCCACATCGTCTATTTTAT 59.119 37.500 0.00 0.00 0.00 1.40
3228 4438 5.007626 TGCTTGCCACATCGTCTATTTTATC 59.992 40.000 0.00 0.00 0.00 1.75
3229 4439 5.237344 GCTTGCCACATCGTCTATTTTATCT 59.763 40.000 0.00 0.00 0.00 1.98
3230 4440 6.423905 GCTTGCCACATCGTCTATTTTATCTA 59.576 38.462 0.00 0.00 0.00 1.98
3231 4441 7.359598 GCTTGCCACATCGTCTATTTTATCTAG 60.360 40.741 0.00 0.00 0.00 2.43
3232 4442 7.284919 TGCCACATCGTCTATTTTATCTAGA 57.715 36.000 0.00 0.00 0.00 2.43
3233 4443 7.722363 TGCCACATCGTCTATTTTATCTAGAA 58.278 34.615 0.00 0.00 0.00 2.10
3234 4444 8.201464 TGCCACATCGTCTATTTTATCTAGAAA 58.799 33.333 0.00 0.00 0.00 2.52
3235 4445 9.209175 GCCACATCGTCTATTTTATCTAGAAAT 57.791 33.333 0.00 0.00 0.00 2.17
3252 4462 8.362464 TCTAGAAATGTGTGATGTTACTACCT 57.638 34.615 0.00 0.00 0.00 3.08
3253 4463 8.251026 TCTAGAAATGTGTGATGTTACTACCTG 58.749 37.037 0.00 0.00 0.00 4.00
3254 4464 6.769512 AGAAATGTGTGATGTTACTACCTGT 58.230 36.000 0.00 0.00 0.00 4.00
3255 4465 6.650807 AGAAATGTGTGATGTTACTACCTGTG 59.349 38.462 0.00 0.00 0.00 3.66
3256 4466 4.948341 TGTGTGATGTTACTACCTGTGT 57.052 40.909 0.00 0.00 0.00 3.72
3257 4467 5.284861 TGTGTGATGTTACTACCTGTGTT 57.715 39.130 0.00 0.00 0.00 3.32
3258 4468 6.408107 TGTGTGATGTTACTACCTGTGTTA 57.592 37.500 0.00 0.00 0.00 2.41
3259 4469 6.218019 TGTGTGATGTTACTACCTGTGTTAC 58.782 40.000 0.00 0.00 0.00 2.50
3260 4470 6.041182 TGTGTGATGTTACTACCTGTGTTACT 59.959 38.462 0.00 0.00 0.00 2.24
3261 4471 6.585322 GTGTGATGTTACTACCTGTGTTACTC 59.415 42.308 0.00 0.00 0.00 2.59
3262 4472 6.098017 GTGATGTTACTACCTGTGTTACTCC 58.902 44.000 0.00 0.00 0.00 3.85
3263 4473 5.186409 TGATGTTACTACCTGTGTTACTCCC 59.814 44.000 0.00 0.00 0.00 4.30
3264 4474 4.482030 TGTTACTACCTGTGTTACTCCCA 58.518 43.478 0.00 0.00 0.00 4.37
3265 4475 5.088730 TGTTACTACCTGTGTTACTCCCAT 58.911 41.667 0.00 0.00 0.00 4.00
3266 4476 5.544948 TGTTACTACCTGTGTTACTCCCATT 59.455 40.000 0.00 0.00 0.00 3.16
3267 4477 6.725369 TGTTACTACCTGTGTTACTCCCATTA 59.275 38.462 0.00 0.00 0.00 1.90
3268 4478 7.400915 TGTTACTACCTGTGTTACTCCCATTAT 59.599 37.037 0.00 0.00 0.00 1.28
3269 4479 6.235231 ACTACCTGTGTTACTCCCATTATG 57.765 41.667 0.00 0.00 0.00 1.90
3270 4480 4.503714 ACCTGTGTTACTCCCATTATGG 57.496 45.455 3.85 3.85 37.25 2.74
3271 4481 4.108570 ACCTGTGTTACTCCCATTATGGA 58.891 43.478 13.63 0.00 40.96 3.41
3272 4482 4.726825 ACCTGTGTTACTCCCATTATGGAT 59.273 41.667 13.63 0.36 40.96 3.41
3273 4483 5.908831 ACCTGTGTTACTCCCATTATGGATA 59.091 40.000 13.63 0.00 40.96 2.59
3274 4484 6.043243 ACCTGTGTTACTCCCATTATGGATAG 59.957 42.308 13.63 11.82 40.96 2.08
3275 4485 6.043243 CCTGTGTTACTCCCATTATGGATAGT 59.957 42.308 13.63 16.67 40.96 2.12
3282 4492 7.560796 ACTCCCATTATGGATAGTTTAGAGG 57.439 40.000 13.63 0.00 40.96 3.69
3286 4496 7.235606 TCCCATTATGGATAGTTTAGAGGACAG 59.764 40.741 13.63 0.00 40.96 3.51
3295 4505 9.364653 GGATAGTTTAGAGGACAGATAAGGTAA 57.635 37.037 0.00 0.00 0.00 2.85
3307 4517 5.126779 CAGATAAGGTAAAAGAGGGGAAGC 58.873 45.833 0.00 0.00 0.00 3.86
3314 4524 4.658786 AGAGGGGAAGCGGTGGGT 62.659 66.667 0.00 0.00 0.00 4.51
3315 4525 3.647771 GAGGGGAAGCGGTGGGTT 61.648 66.667 0.00 0.00 36.38 4.11
3377 4587 2.512286 CGCTGCCCGACACATGAT 60.512 61.111 0.00 0.00 40.02 2.45
3382 4592 1.811965 CTGCCCGACACATGATGAAAA 59.188 47.619 0.00 0.00 0.00 2.29
3388 4598 4.158394 CCCGACACATGATGAAAAAGGATT 59.842 41.667 0.00 0.00 0.00 3.01
3442 4673 8.606602 GCAACATTTTCTCTGAAAAGAATGTTT 58.393 29.630 14.93 4.91 36.81 2.83
3445 4676 9.317936 ACATTTTCTCTGAAAAGAATGTTTTCC 57.682 29.630 12.17 0.00 35.30 3.13
3446 4677 9.316730 CATTTTCTCTGAAAAGAATGTTTTCCA 57.683 29.630 12.17 0.00 35.30 3.53
3448 4679 9.889128 TTTTCTCTGAAAAGAATGTTTTCCATT 57.111 25.926 12.17 0.00 46.51 3.16
3474 4708 4.072839 CACTTTCTTCTTACCACCCCTTC 58.927 47.826 0.00 0.00 0.00 3.46
3485 4719 0.889186 CACCCCTTCGTCCAACCTTG 60.889 60.000 0.00 0.00 0.00 3.61
3490 4724 3.418047 CCCTTCGTCCAACCTTGTTTAT 58.582 45.455 0.00 0.00 0.00 1.40
3491 4725 4.566070 CCCCTTCGTCCAACCTTGTTTATA 60.566 45.833 0.00 0.00 0.00 0.98
3492 4726 5.005094 CCCTTCGTCCAACCTTGTTTATAA 58.995 41.667 0.00 0.00 0.00 0.98
3493 4727 5.123344 CCCTTCGTCCAACCTTGTTTATAAG 59.877 44.000 0.00 0.00 0.00 1.73
3575 4809 8.974060 ACTTACCAAACTTCTCATCAAACTAA 57.026 30.769 0.00 0.00 0.00 2.24
3576 4810 9.057089 ACTTACCAAACTTCTCATCAAACTAAG 57.943 33.333 0.00 0.00 0.00 2.18
3577 4811 6.884280 ACCAAACTTCTCATCAAACTAAGG 57.116 37.500 0.00 0.00 0.00 2.69
3578 4812 6.601332 ACCAAACTTCTCATCAAACTAAGGA 58.399 36.000 0.00 0.00 0.00 3.36
3579 4813 6.486993 ACCAAACTTCTCATCAAACTAAGGAC 59.513 38.462 0.00 0.00 0.00 3.85
3580 4814 6.347725 CCAAACTTCTCATCAAACTAAGGACG 60.348 42.308 0.00 0.00 0.00 4.79
3581 4815 4.822026 ACTTCTCATCAAACTAAGGACGG 58.178 43.478 0.00 0.00 0.00 4.79
3582 4816 3.887621 TCTCATCAAACTAAGGACGGG 57.112 47.619 0.00 0.00 0.00 5.28
3583 4817 2.500098 TCTCATCAAACTAAGGACGGGG 59.500 50.000 0.00 0.00 0.00 5.73
3584 4818 1.065709 TCATCAAACTAAGGACGGGGC 60.066 52.381 0.00 0.00 0.00 5.80
3585 4819 1.065418 CATCAAACTAAGGACGGGGCT 60.065 52.381 0.00 0.00 0.00 5.19
3586 4820 1.061546 TCAAACTAAGGACGGGGCTT 58.938 50.000 0.00 0.00 0.00 4.35
3587 4821 1.165270 CAAACTAAGGACGGGGCTTG 58.835 55.000 0.00 0.00 0.00 4.01
3588 4822 0.608308 AAACTAAGGACGGGGCTTGC 60.608 55.000 0.00 0.00 0.00 4.01
3589 4823 2.124695 CTAAGGACGGGGCTTGCC 60.125 66.667 2.49 2.49 0.00 4.52
3590 4824 2.609610 TAAGGACGGGGCTTGCCT 60.610 61.111 11.71 0.00 0.00 4.75
3591 4825 2.595009 CTAAGGACGGGGCTTGCCTC 62.595 65.000 11.71 6.52 0.00 4.70
3594 4828 4.475135 GACGGGGCTTGCCTCCTC 62.475 72.222 11.71 3.22 0.00 3.71
3598 4832 3.803162 GGGCTTGCCTCCTCCCTC 61.803 72.222 11.71 0.00 35.87 4.30
3599 4833 3.803162 GGCTTGCCTCCTCCCTCC 61.803 72.222 4.11 0.00 0.00 4.30
3600 4834 4.168291 GCTTGCCTCCTCCCTCCG 62.168 72.222 0.00 0.00 0.00 4.63
3601 4835 4.168291 CTTGCCTCCTCCCTCCGC 62.168 72.222 0.00 0.00 0.00 5.54
3612 4846 4.899239 CCTCCGCGTGCTCCCATC 62.899 72.222 4.92 0.00 0.00 3.51
3613 4847 3.842923 CTCCGCGTGCTCCCATCT 61.843 66.667 4.92 0.00 0.00 2.90
3614 4848 2.441348 TCCGCGTGCTCCCATCTA 60.441 61.111 4.92 0.00 0.00 1.98
3615 4849 1.810606 CTCCGCGTGCTCCCATCTAT 61.811 60.000 4.92 0.00 0.00 1.98
3616 4850 0.538746 TCCGCGTGCTCCCATCTATA 60.539 55.000 4.92 0.00 0.00 1.31
3617 4851 0.388649 CCGCGTGCTCCCATCTATAC 60.389 60.000 4.92 0.00 0.00 1.47
3618 4852 0.598562 CGCGTGCTCCCATCTATACT 59.401 55.000 0.00 0.00 0.00 2.12
3619 4853 1.401670 CGCGTGCTCCCATCTATACTC 60.402 57.143 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.450312 CGGTTGCTGAGGTGGATCC 60.450 63.158 4.20 4.20 0.00 3.36
1 2 0.741221 GACGGTTGCTGAGGTGGATC 60.741 60.000 0.00 0.00 0.00 3.36
2 3 1.296715 GACGGTTGCTGAGGTGGAT 59.703 57.895 0.00 0.00 0.00 3.41
3 4 2.137528 TGACGGTTGCTGAGGTGGA 61.138 57.895 0.00 0.00 0.00 4.02
4 5 1.961277 GTGACGGTTGCTGAGGTGG 60.961 63.158 0.00 0.00 0.00 4.61
5 6 1.961277 GGTGACGGTTGCTGAGGTG 60.961 63.158 0.00 0.00 0.00 4.00
6 7 1.768684 ATGGTGACGGTTGCTGAGGT 61.769 55.000 0.00 0.00 0.00 3.85
7 8 1.003355 ATGGTGACGGTTGCTGAGG 60.003 57.895 0.00 0.00 0.00 3.86
8 9 1.354337 CGATGGTGACGGTTGCTGAG 61.354 60.000 0.00 0.00 0.00 3.35
9 10 1.374125 CGATGGTGACGGTTGCTGA 60.374 57.895 0.00 0.00 0.00 4.26
10 11 1.374125 TCGATGGTGACGGTTGCTG 60.374 57.895 0.00 0.00 0.00 4.41
11 12 1.374252 GTCGATGGTGACGGTTGCT 60.374 57.895 0.00 0.00 0.00 3.91
12 13 3.165498 GTCGATGGTGACGGTTGC 58.835 61.111 0.00 0.00 0.00 4.17
18 19 0.242825 TTGGAGACGTCGATGGTGAC 59.757 55.000 10.46 0.00 35.49 3.67
19 20 0.526211 CTTGGAGACGTCGATGGTGA 59.474 55.000 10.46 0.00 0.00 4.02
20 21 0.458543 CCTTGGAGACGTCGATGGTG 60.459 60.000 10.46 0.45 0.00 4.17
21 22 1.890894 CCTTGGAGACGTCGATGGT 59.109 57.895 10.46 0.05 0.00 3.55
22 23 1.519455 GCCTTGGAGACGTCGATGG 60.519 63.158 10.46 10.68 0.00 3.51
23 24 1.519455 GGCCTTGGAGACGTCGATG 60.519 63.158 10.46 2.26 0.00 3.84
24 25 2.893398 GGCCTTGGAGACGTCGAT 59.107 61.111 10.46 0.00 0.00 3.59
25 26 3.744719 CGGCCTTGGAGACGTCGA 61.745 66.667 10.46 0.00 0.00 4.20
29 30 4.821589 GAGGCGGCCTTGGAGACG 62.822 72.222 24.71 0.00 31.76 4.18
30 31 4.475135 GGAGGCGGCCTTGGAGAC 62.475 72.222 24.71 8.89 31.76 3.36
32 33 4.033776 TTGGAGGCGGCCTTGGAG 62.034 66.667 24.71 0.00 31.76 3.86
33 34 4.344865 GTTGGAGGCGGCCTTGGA 62.345 66.667 24.71 9.00 31.76 3.53
34 35 4.659172 TGTTGGAGGCGGCCTTGG 62.659 66.667 24.71 0.00 31.76 3.61
35 36 3.365265 GTGTTGGAGGCGGCCTTG 61.365 66.667 24.71 0.00 31.76 3.61
36 37 4.660938 GGTGTTGGAGGCGGCCTT 62.661 66.667 24.71 6.85 31.76 4.35
40 41 4.263572 TGGTGGTGTTGGAGGCGG 62.264 66.667 0.00 0.00 0.00 6.13
41 42 2.978010 GTGGTGGTGTTGGAGGCG 60.978 66.667 0.00 0.00 0.00 5.52
42 43 2.597510 GGTGGTGGTGTTGGAGGC 60.598 66.667 0.00 0.00 0.00 4.70
43 44 2.115266 GGGTGGTGGTGTTGGAGG 59.885 66.667 0.00 0.00 0.00 4.30
44 45 2.115266 GGGGTGGTGGTGTTGGAG 59.885 66.667 0.00 0.00 0.00 3.86
45 46 3.503839 GGGGGTGGTGGTGTTGGA 61.504 66.667 0.00 0.00 0.00 3.53
46 47 4.966787 CGGGGGTGGTGGTGTTGG 62.967 72.222 0.00 0.00 0.00 3.77
59 60 3.938637 GAAAAGGAGGGTGGCGGGG 62.939 68.421 0.00 0.00 0.00 5.73
60 61 2.361230 GAAAAGGAGGGTGGCGGG 60.361 66.667 0.00 0.00 0.00 6.13
61 62 2.361230 GGAAAAGGAGGGTGGCGG 60.361 66.667 0.00 0.00 0.00 6.13
62 63 1.675641 CTGGAAAAGGAGGGTGGCG 60.676 63.158 0.00 0.00 0.00 5.69
63 64 0.322906 CTCTGGAAAAGGAGGGTGGC 60.323 60.000 0.00 0.00 0.00 5.01
64 65 1.362224 TCTCTGGAAAAGGAGGGTGG 58.638 55.000 0.00 0.00 0.00 4.61
65 66 4.410228 TCATATCTCTGGAAAAGGAGGGTG 59.590 45.833 0.00 0.00 0.00 4.61
66 67 4.635473 TCATATCTCTGGAAAAGGAGGGT 58.365 43.478 0.00 0.00 0.00 4.34
67 68 5.619220 CTTCATATCTCTGGAAAAGGAGGG 58.381 45.833 0.00 0.00 0.00 4.30
68 69 5.062528 GCTTCATATCTCTGGAAAAGGAGG 58.937 45.833 0.00 0.00 0.00 4.30
69 70 5.759273 CAGCTTCATATCTCTGGAAAAGGAG 59.241 44.000 0.00 0.00 0.00 3.69
70 71 5.190528 ACAGCTTCATATCTCTGGAAAAGGA 59.809 40.000 0.00 0.00 0.00 3.36
71 72 5.435291 ACAGCTTCATATCTCTGGAAAAGG 58.565 41.667 0.00 0.00 0.00 3.11
72 73 8.674263 AATACAGCTTCATATCTCTGGAAAAG 57.326 34.615 0.00 0.00 0.00 2.27
73 74 9.466497 AAAATACAGCTTCATATCTCTGGAAAA 57.534 29.630 0.00 0.00 0.00 2.29
74 75 9.113838 GAAAATACAGCTTCATATCTCTGGAAA 57.886 33.333 0.00 0.00 0.00 3.13
75 76 7.716998 GGAAAATACAGCTTCATATCTCTGGAA 59.283 37.037 0.00 0.00 0.00 3.53
76 77 7.220030 GGAAAATACAGCTTCATATCTCTGGA 58.780 38.462 0.00 0.00 0.00 3.86
77 78 6.146837 CGGAAAATACAGCTTCATATCTCTGG 59.853 42.308 0.00 0.00 0.00 3.86
78 79 6.146837 CCGGAAAATACAGCTTCATATCTCTG 59.853 42.308 0.00 0.00 0.00 3.35
79 80 6.183361 ACCGGAAAATACAGCTTCATATCTCT 60.183 38.462 9.46 0.00 0.00 3.10
80 81 5.992217 ACCGGAAAATACAGCTTCATATCTC 59.008 40.000 9.46 0.00 0.00 2.75
81 82 5.760253 CACCGGAAAATACAGCTTCATATCT 59.240 40.000 9.46 0.00 0.00 1.98
82 83 5.527582 ACACCGGAAAATACAGCTTCATATC 59.472 40.000 9.46 0.00 0.00 1.63
83 84 5.296780 CACACCGGAAAATACAGCTTCATAT 59.703 40.000 9.46 0.00 0.00 1.78
84 85 4.634004 CACACCGGAAAATACAGCTTCATA 59.366 41.667 9.46 0.00 0.00 2.15
85 86 3.440173 CACACCGGAAAATACAGCTTCAT 59.560 43.478 9.46 0.00 0.00 2.57
86 87 2.811431 CACACCGGAAAATACAGCTTCA 59.189 45.455 9.46 0.00 0.00 3.02
87 88 2.414161 GCACACCGGAAAATACAGCTTC 60.414 50.000 9.46 0.00 0.00 3.86
88 89 1.539827 GCACACCGGAAAATACAGCTT 59.460 47.619 9.46 0.00 0.00 3.74
89 90 1.165270 GCACACCGGAAAATACAGCT 58.835 50.000 9.46 0.00 0.00 4.24
90 91 1.130561 GAGCACACCGGAAAATACAGC 59.869 52.381 9.46 0.00 0.00 4.40
91 92 2.422597 TGAGCACACCGGAAAATACAG 58.577 47.619 9.46 0.00 0.00 2.74
92 93 2.552599 TGAGCACACCGGAAAATACA 57.447 45.000 9.46 0.00 0.00 2.29
93 94 3.500680 TCTTTGAGCACACCGGAAAATAC 59.499 43.478 9.46 0.00 0.00 1.89
94 95 3.745799 TCTTTGAGCACACCGGAAAATA 58.254 40.909 9.46 0.00 0.00 1.40
95 96 2.582052 TCTTTGAGCACACCGGAAAAT 58.418 42.857 9.46 0.00 0.00 1.82
96 97 2.045561 TCTTTGAGCACACCGGAAAA 57.954 45.000 9.46 0.00 0.00 2.29
97 98 2.045561 TTCTTTGAGCACACCGGAAA 57.954 45.000 9.46 0.00 0.00 3.13
98 99 2.270352 ATTCTTTGAGCACACCGGAA 57.730 45.000 9.46 0.00 0.00 4.30
99 100 3.334691 CTTATTCTTTGAGCACACCGGA 58.665 45.455 9.46 0.00 0.00 5.14
100 101 2.159517 GCTTATTCTTTGAGCACACCGG 60.160 50.000 0.00 0.00 36.45 5.28
101 102 2.483877 TGCTTATTCTTTGAGCACACCG 59.516 45.455 0.00 0.00 41.15 4.94
102 103 3.753272 TCTGCTTATTCTTTGAGCACACC 59.247 43.478 0.00 0.00 41.15 4.16
103 104 5.149977 GTTCTGCTTATTCTTTGAGCACAC 58.850 41.667 0.00 0.00 41.15 3.82
104 105 4.216257 GGTTCTGCTTATTCTTTGAGCACA 59.784 41.667 0.00 0.00 41.15 4.57
105 106 4.457257 AGGTTCTGCTTATTCTTTGAGCAC 59.543 41.667 0.00 0.00 41.15 4.40
106 107 4.655963 AGGTTCTGCTTATTCTTTGAGCA 58.344 39.130 0.00 0.00 43.56 4.26
107 108 5.220758 GCTAGGTTCTGCTTATTCTTTGAGC 60.221 44.000 0.00 0.00 36.95 4.26
108 109 5.877012 TGCTAGGTTCTGCTTATTCTTTGAG 59.123 40.000 0.00 0.00 0.00 3.02
109 110 5.804639 TGCTAGGTTCTGCTTATTCTTTGA 58.195 37.500 0.00 0.00 0.00 2.69
110 111 5.645497 ACTGCTAGGTTCTGCTTATTCTTTG 59.355 40.000 0.00 0.00 0.00 2.77
111 112 5.810095 ACTGCTAGGTTCTGCTTATTCTTT 58.190 37.500 0.00 0.00 0.00 2.52
112 113 5.428184 ACTGCTAGGTTCTGCTTATTCTT 57.572 39.130 0.00 0.00 0.00 2.52
113 114 6.546428 TTACTGCTAGGTTCTGCTTATTCT 57.454 37.500 0.00 0.00 0.00 2.40
114 115 6.594159 TGTTTACTGCTAGGTTCTGCTTATTC 59.406 38.462 0.00 0.00 0.00 1.75
115 116 6.472887 TGTTTACTGCTAGGTTCTGCTTATT 58.527 36.000 0.00 0.00 0.00 1.40
116 117 6.049955 TGTTTACTGCTAGGTTCTGCTTAT 57.950 37.500 0.00 0.00 0.00 1.73
117 118 5.477607 TGTTTACTGCTAGGTTCTGCTTA 57.522 39.130 0.00 0.00 0.00 3.09
118 119 4.351874 TGTTTACTGCTAGGTTCTGCTT 57.648 40.909 0.00 0.00 0.00 3.91
119 120 4.508662 GATGTTTACTGCTAGGTTCTGCT 58.491 43.478 0.00 0.00 0.00 4.24
120 121 3.623510 GGATGTTTACTGCTAGGTTCTGC 59.376 47.826 0.00 0.00 0.00 4.26
121 122 5.091261 AGGATGTTTACTGCTAGGTTCTG 57.909 43.478 0.00 0.00 0.00 3.02
122 123 5.763876 AAGGATGTTTACTGCTAGGTTCT 57.236 39.130 0.00 0.00 0.00 3.01
123 124 6.313164 GTGTAAGGATGTTTACTGCTAGGTTC 59.687 42.308 0.00 0.00 35.16 3.62
124 125 6.171213 GTGTAAGGATGTTTACTGCTAGGTT 58.829 40.000 0.00 0.00 35.16 3.50
125 126 5.623824 CGTGTAAGGATGTTTACTGCTAGGT 60.624 44.000 0.00 0.00 35.16 3.08
126 127 4.804139 CGTGTAAGGATGTTTACTGCTAGG 59.196 45.833 0.00 0.00 35.16 3.02
127 128 4.804139 CCGTGTAAGGATGTTTACTGCTAG 59.196 45.833 0.00 0.00 35.16 3.42
128 129 4.382254 CCCGTGTAAGGATGTTTACTGCTA 60.382 45.833 0.00 0.00 35.16 3.49
129 130 3.596214 CCGTGTAAGGATGTTTACTGCT 58.404 45.455 0.00 0.00 35.16 4.24
130 131 2.676342 CCCGTGTAAGGATGTTTACTGC 59.324 50.000 0.00 0.00 35.16 4.40
131 132 2.676342 GCCCGTGTAAGGATGTTTACTG 59.324 50.000 0.00 0.00 35.16 2.74
132 133 2.675889 CGCCCGTGTAAGGATGTTTACT 60.676 50.000 0.00 0.00 35.16 2.24
133 134 1.662122 CGCCCGTGTAAGGATGTTTAC 59.338 52.381 0.00 0.00 34.78 2.01
134 135 1.275856 ACGCCCGTGTAAGGATGTTTA 59.724 47.619 0.00 0.00 0.00 2.01
135 136 0.035739 ACGCCCGTGTAAGGATGTTT 59.964 50.000 0.00 0.00 0.00 2.83
136 137 0.896923 TACGCCCGTGTAAGGATGTT 59.103 50.000 3.22 0.00 0.00 2.71
137 138 0.896923 TTACGCCCGTGTAAGGATGT 59.103 50.000 3.22 0.00 31.06 3.06
138 139 2.132762 GATTACGCCCGTGTAAGGATG 58.867 52.381 3.22 0.00 37.71 3.51
139 140 1.758280 TGATTACGCCCGTGTAAGGAT 59.242 47.619 3.22 0.00 37.71 3.24
140 141 1.135024 GTGATTACGCCCGTGTAAGGA 60.135 52.381 3.22 0.00 37.71 3.36
141 142 1.283736 GTGATTACGCCCGTGTAAGG 58.716 55.000 3.22 0.00 37.71 2.69
142 143 0.918619 CGTGATTACGCCCGTGTAAG 59.081 55.000 3.22 0.00 44.11 2.34
143 144 3.033114 CGTGATTACGCCCGTGTAA 57.967 52.632 3.22 3.51 44.11 2.41
144 145 4.790051 CGTGATTACGCCCGTGTA 57.210 55.556 3.22 0.00 44.11 2.90
153 154 5.012328 AGTGAGAAGGGAATCGTGATTAC 57.988 43.478 0.00 0.00 0.00 1.89
154 155 5.422331 AGAAGTGAGAAGGGAATCGTGATTA 59.578 40.000 0.00 0.00 0.00 1.75
155 156 4.223923 AGAAGTGAGAAGGGAATCGTGATT 59.776 41.667 0.00 0.00 0.00 2.57
156 157 3.772025 AGAAGTGAGAAGGGAATCGTGAT 59.228 43.478 0.00 0.00 0.00 3.06
157 158 3.165875 AGAAGTGAGAAGGGAATCGTGA 58.834 45.455 0.00 0.00 0.00 4.35
158 159 3.601443 AGAAGTGAGAAGGGAATCGTG 57.399 47.619 0.00 0.00 0.00 4.35
159 160 3.578716 TCAAGAAGTGAGAAGGGAATCGT 59.421 43.478 0.00 0.00 0.00 3.73
160 161 3.929610 GTCAAGAAGTGAGAAGGGAATCG 59.070 47.826 0.00 0.00 36.74 3.34
161 162 5.159273 AGTCAAGAAGTGAGAAGGGAATC 57.841 43.478 0.00 0.00 36.74 2.52
162 163 5.309282 AGAAGTCAAGAAGTGAGAAGGGAAT 59.691 40.000 0.00 0.00 36.74 3.01
163 164 4.656112 AGAAGTCAAGAAGTGAGAAGGGAA 59.344 41.667 0.00 0.00 36.74 3.97
164 165 4.227197 AGAAGTCAAGAAGTGAGAAGGGA 58.773 43.478 0.00 0.00 36.74 4.20
165 166 4.615588 AGAAGTCAAGAAGTGAGAAGGG 57.384 45.455 0.00 0.00 36.74 3.95
166 167 5.236047 CACAAGAAGTCAAGAAGTGAGAAGG 59.764 44.000 0.00 0.00 36.74 3.46
167 168 5.236047 CCACAAGAAGTCAAGAAGTGAGAAG 59.764 44.000 0.00 0.00 36.74 2.85
168 169 5.118990 CCACAAGAAGTCAAGAAGTGAGAA 58.881 41.667 0.00 0.00 36.74 2.87
169 170 4.162320 ACCACAAGAAGTCAAGAAGTGAGA 59.838 41.667 0.00 0.00 36.74 3.27
170 171 4.272018 CACCACAAGAAGTCAAGAAGTGAG 59.728 45.833 0.00 0.00 36.74 3.51
171 172 4.191544 CACCACAAGAAGTCAAGAAGTGA 58.808 43.478 0.00 0.00 0.00 3.41
172 173 3.313526 CCACCACAAGAAGTCAAGAAGTG 59.686 47.826 0.00 0.00 0.00 3.16
173 174 3.545703 CCACCACAAGAAGTCAAGAAGT 58.454 45.455 0.00 0.00 0.00 3.01
174 175 2.880890 CCCACCACAAGAAGTCAAGAAG 59.119 50.000 0.00 0.00 0.00 2.85
175 176 2.930950 CCCACCACAAGAAGTCAAGAA 58.069 47.619 0.00 0.00 0.00 2.52
176 177 1.476833 GCCCACCACAAGAAGTCAAGA 60.477 52.381 0.00 0.00 0.00 3.02
177 178 0.954452 GCCCACCACAAGAAGTCAAG 59.046 55.000 0.00 0.00 0.00 3.02
178 179 0.550914 AGCCCACCACAAGAAGTCAA 59.449 50.000 0.00 0.00 0.00 3.18
179 180 0.108585 GAGCCCACCACAAGAAGTCA 59.891 55.000 0.00 0.00 0.00 3.41
180 181 0.398318 AGAGCCCACCACAAGAAGTC 59.602 55.000 0.00 0.00 0.00 3.01
181 182 0.846693 AAGAGCCCACCACAAGAAGT 59.153 50.000 0.00 0.00 0.00 3.01
182 183 2.859165 TAAGAGCCCACCACAAGAAG 57.141 50.000 0.00 0.00 0.00 2.85
183 184 6.763715 ATATATAAGAGCCCACCACAAGAA 57.236 37.500 0.00 0.00 0.00 2.52
184 185 6.763715 AATATATAAGAGCCCACCACAAGA 57.236 37.500 0.00 0.00 0.00 3.02
185 186 7.680730 ACTAATATATAAGAGCCCACCACAAG 58.319 38.462 0.00 0.00 0.00 3.16
186 187 7.626999 ACTAATATATAAGAGCCCACCACAA 57.373 36.000 0.00 0.00 0.00 3.33
187 188 7.291416 TCAACTAATATATAAGAGCCCACCACA 59.709 37.037 0.00 0.00 0.00 4.17
188 189 7.676947 TCAACTAATATATAAGAGCCCACCAC 58.323 38.462 0.00 0.00 0.00 4.16
189 190 7.038302 CCTCAACTAATATATAAGAGCCCACCA 60.038 40.741 0.00 0.00 0.00 4.17
190 191 7.180408 TCCTCAACTAATATATAAGAGCCCACC 59.820 40.741 0.00 0.00 0.00 4.61
191 192 8.135382 TCCTCAACTAATATATAAGAGCCCAC 57.865 38.462 0.00 0.00 0.00 4.61
192 193 7.956315 ACTCCTCAACTAATATATAAGAGCCCA 59.044 37.037 0.00 0.00 0.00 5.36
193 194 8.368962 ACTCCTCAACTAATATATAAGAGCCC 57.631 38.462 0.00 0.00 0.00 5.19
202 203 9.595823 GTGTAGCAAAACTCCTCAACTAATATA 57.404 33.333 0.00 0.00 0.00 0.86
203 204 8.322091 AGTGTAGCAAAACTCCTCAACTAATAT 58.678 33.333 0.00 0.00 0.00 1.28
204 205 7.676947 AGTGTAGCAAAACTCCTCAACTAATA 58.323 34.615 0.00 0.00 0.00 0.98
205 206 6.534634 AGTGTAGCAAAACTCCTCAACTAAT 58.465 36.000 0.00 0.00 0.00 1.73
206 207 5.925509 AGTGTAGCAAAACTCCTCAACTAA 58.074 37.500 0.00 0.00 0.00 2.24
207 208 5.546621 AGTGTAGCAAAACTCCTCAACTA 57.453 39.130 0.00 0.00 0.00 2.24
208 209 4.423625 AGTGTAGCAAAACTCCTCAACT 57.576 40.909 0.00 0.00 0.00 3.16
209 210 5.333111 CGTAAGTGTAGCAAAACTCCTCAAC 60.333 44.000 0.00 0.00 0.00 3.18
210 211 4.748102 CGTAAGTGTAGCAAAACTCCTCAA 59.252 41.667 0.00 0.00 0.00 3.02
211 212 4.304110 CGTAAGTGTAGCAAAACTCCTCA 58.696 43.478 0.00 0.00 0.00 3.86
212 213 3.123116 GCGTAAGTGTAGCAAAACTCCTC 59.877 47.826 0.00 0.00 41.68 3.71
213 214 3.064931 GCGTAAGTGTAGCAAAACTCCT 58.935 45.455 0.00 0.00 41.68 3.69
214 215 2.159881 CGCGTAAGTGTAGCAAAACTCC 60.160 50.000 0.00 0.00 44.45 3.85
215 216 3.086298 CGCGTAAGTGTAGCAAAACTC 57.914 47.619 0.00 0.00 44.45 3.01
227 228 1.131883 ACGTAGAATCTGCGCGTAAGT 59.868 47.619 20.00 0.00 42.92 2.24
228 229 1.513178 CACGTAGAATCTGCGCGTAAG 59.487 52.381 20.00 6.26 42.92 2.34
229 230 1.130938 TCACGTAGAATCTGCGCGTAA 59.869 47.619 20.00 1.19 42.92 3.18
230 231 0.728542 TCACGTAGAATCTGCGCGTA 59.271 50.000 20.00 0.71 42.92 4.42
231 232 0.100682 ATCACGTAGAATCTGCGCGT 59.899 50.000 20.00 11.36 42.92 6.01
232 233 0.500178 CATCACGTAGAATCTGCGCG 59.500 55.000 20.00 11.42 42.92 6.86
233 234 1.560923 ACATCACGTAGAATCTGCGC 58.439 50.000 20.00 0.00 42.92 6.09
234 235 3.242091 CCAAACATCACGTAGAATCTGCG 60.242 47.826 18.62 18.62 44.55 5.18
235 236 3.932710 TCCAAACATCACGTAGAATCTGC 59.067 43.478 0.00 0.00 0.00 4.26
236 237 5.171476 ACTCCAAACATCACGTAGAATCTG 58.829 41.667 0.00 0.00 0.00 2.90
237 238 5.407407 ACTCCAAACATCACGTAGAATCT 57.593 39.130 0.00 0.00 0.00 2.40
238 239 6.307155 CAAACTCCAAACATCACGTAGAATC 58.693 40.000 0.00 0.00 0.00 2.52
239 240 5.181245 CCAAACTCCAAACATCACGTAGAAT 59.819 40.000 0.00 0.00 0.00 2.40
240 241 4.513692 CCAAACTCCAAACATCACGTAGAA 59.486 41.667 0.00 0.00 0.00 2.10
241 242 4.062293 CCAAACTCCAAACATCACGTAGA 58.938 43.478 0.00 0.00 0.00 2.59
242 243 3.813166 ACCAAACTCCAAACATCACGTAG 59.187 43.478 0.00 0.00 0.00 3.51
243 244 3.811083 ACCAAACTCCAAACATCACGTA 58.189 40.909 0.00 0.00 0.00 3.57
244 245 2.650322 ACCAAACTCCAAACATCACGT 58.350 42.857 0.00 0.00 0.00 4.49
245 246 3.708563 AACCAAACTCCAAACATCACG 57.291 42.857 0.00 0.00 0.00 4.35
246 247 4.533222 CGTAACCAAACTCCAAACATCAC 58.467 43.478 0.00 0.00 0.00 3.06
247 248 3.566322 CCGTAACCAAACTCCAAACATCA 59.434 43.478 0.00 0.00 0.00 3.07
248 249 3.816523 TCCGTAACCAAACTCCAAACATC 59.183 43.478 0.00 0.00 0.00 3.06
249 250 3.566742 GTCCGTAACCAAACTCCAAACAT 59.433 43.478 0.00 0.00 0.00 2.71
250 251 2.944349 GTCCGTAACCAAACTCCAAACA 59.056 45.455 0.00 0.00 0.00 2.83
251 252 3.002965 CAGTCCGTAACCAAACTCCAAAC 59.997 47.826 0.00 0.00 0.00 2.93
252 253 3.118334 TCAGTCCGTAACCAAACTCCAAA 60.118 43.478 0.00 0.00 0.00 3.28
253 254 2.435069 TCAGTCCGTAACCAAACTCCAA 59.565 45.455 0.00 0.00 0.00 3.53
254 255 2.040939 TCAGTCCGTAACCAAACTCCA 58.959 47.619 0.00 0.00 0.00 3.86
255 256 2.410939 GTCAGTCCGTAACCAAACTCC 58.589 52.381 0.00 0.00 0.00 3.85
256 257 2.056577 CGTCAGTCCGTAACCAAACTC 58.943 52.381 0.00 0.00 0.00 3.01
257 258 1.410153 ACGTCAGTCCGTAACCAAACT 59.590 47.619 0.00 0.00 39.73 2.66
258 259 1.523934 CACGTCAGTCCGTAACCAAAC 59.476 52.381 0.00 0.00 39.45 2.93
259 260 1.538634 CCACGTCAGTCCGTAACCAAA 60.539 52.381 0.00 0.00 39.45 3.28
260 261 0.032403 CCACGTCAGTCCGTAACCAA 59.968 55.000 0.00 0.00 39.45 3.67
261 262 1.661480 CCACGTCAGTCCGTAACCA 59.339 57.895 0.00 0.00 39.45 3.67
262 263 1.080298 CCCACGTCAGTCCGTAACC 60.080 63.158 0.00 0.00 39.45 2.85
263 264 4.565531 CCCACGTCAGTCCGTAAC 57.434 61.111 0.00 0.00 39.45 2.50
907 908 7.363530 GGACAACCTTTTCCTAACAAATATCCC 60.364 40.741 0.00 0.00 0.00 3.85
908 909 7.544622 GGACAACCTTTTCCTAACAAATATCC 58.455 38.462 0.00 0.00 0.00 2.59
909 910 7.094506 ACGGACAACCTTTTCCTAACAAATATC 60.095 37.037 0.00 0.00 0.00 1.63
910 911 6.717997 ACGGACAACCTTTTCCTAACAAATAT 59.282 34.615 0.00 0.00 0.00 1.28
911 912 6.063404 ACGGACAACCTTTTCCTAACAAATA 58.937 36.000 0.00 0.00 0.00 1.40
912 913 4.891168 ACGGACAACCTTTTCCTAACAAAT 59.109 37.500 0.00 0.00 0.00 2.32
913 914 4.271661 ACGGACAACCTTTTCCTAACAAA 58.728 39.130 0.00 0.00 0.00 2.83
914 915 3.888583 ACGGACAACCTTTTCCTAACAA 58.111 40.909 0.00 0.00 0.00 2.83
915 916 3.564053 ACGGACAACCTTTTCCTAACA 57.436 42.857 0.00 0.00 0.00 2.41
916 917 3.434641 GCTACGGACAACCTTTTCCTAAC 59.565 47.826 0.00 0.00 0.00 2.34
917 918 3.557686 GGCTACGGACAACCTTTTCCTAA 60.558 47.826 0.00 0.00 0.00 2.69
918 919 2.027837 GGCTACGGACAACCTTTTCCTA 60.028 50.000 0.00 0.00 0.00 2.94
919 920 1.271217 GGCTACGGACAACCTTTTCCT 60.271 52.381 0.00 0.00 0.00 3.36
920 921 1.162698 GGCTACGGACAACCTTTTCC 58.837 55.000 0.00 0.00 0.00 3.13
921 922 1.804748 CAGGCTACGGACAACCTTTTC 59.195 52.381 0.00 0.00 0.00 2.29
922 923 1.892209 CAGGCTACGGACAACCTTTT 58.108 50.000 0.00 0.00 0.00 2.27
923 924 0.605589 GCAGGCTACGGACAACCTTT 60.606 55.000 0.00 0.00 0.00 3.11
924 925 1.003718 GCAGGCTACGGACAACCTT 60.004 57.895 0.00 0.00 0.00 3.50
925 926 2.172483 CTGCAGGCTACGGACAACCT 62.172 60.000 5.57 0.00 0.00 3.50
926 927 1.741770 CTGCAGGCTACGGACAACC 60.742 63.158 5.57 0.00 0.00 3.77
927 928 2.391389 GCTGCAGGCTACGGACAAC 61.391 63.158 17.12 0.00 38.06 3.32
928 929 2.047274 GCTGCAGGCTACGGACAA 60.047 61.111 17.12 0.00 38.06 3.18
929 930 4.082523 GGCTGCAGGCTACGGACA 62.083 66.667 31.40 0.00 41.46 4.02
930 931 4.840005 GGGCTGCAGGCTACGGAC 62.840 72.222 35.64 17.17 41.46 4.79
933 934 3.365291 TTACGGGCTGCAGGCTACG 62.365 63.158 35.64 31.74 43.02 3.51
934 935 1.814169 GTTACGGGCTGCAGGCTAC 60.814 63.158 35.64 24.10 41.46 3.58
935 936 1.987855 AGTTACGGGCTGCAGGCTA 60.988 57.895 35.64 20.90 41.46 3.93
936 937 3.322466 AGTTACGGGCTGCAGGCT 61.322 61.111 35.64 21.95 41.46 4.58
937 938 3.127533 CAGTTACGGGCTGCAGGC 61.128 66.667 30.97 30.97 40.90 4.85
938 939 2.436646 CCAGTTACGGGCTGCAGG 60.437 66.667 17.12 0.73 32.93 4.85
939 940 1.741770 GACCAGTTACGGGCTGCAG 60.742 63.158 10.11 10.11 32.93 4.41
940 941 2.345991 GACCAGTTACGGGCTGCA 59.654 61.111 0.50 0.00 32.93 4.41
941 942 2.436115 GGACCAGTTACGGGCTGC 60.436 66.667 0.50 0.00 32.93 5.25
942 943 2.125673 CGGACCAGTTACGGGCTG 60.126 66.667 0.50 0.00 32.93 4.85
943 944 1.304381 TACGGACCAGTTACGGGCT 60.304 57.895 0.50 0.00 32.93 5.19
944 945 1.140375 CTACGGACCAGTTACGGGC 59.860 63.158 0.50 0.00 0.00 6.13
945 946 0.967380 ACCTACGGACCAGTTACGGG 60.967 60.000 0.00 0.00 0.00 5.28
946 947 0.453390 GACCTACGGACCAGTTACGG 59.547 60.000 0.00 0.00 0.00 4.02
947 948 1.457346 AGACCTACGGACCAGTTACG 58.543 55.000 0.00 0.00 0.00 3.18
948 949 3.878778 TCTAGACCTACGGACCAGTTAC 58.121 50.000 0.00 0.00 0.00 2.50
949 950 4.574674 TTCTAGACCTACGGACCAGTTA 57.425 45.455 0.00 0.00 0.00 2.24
950 951 3.446442 TTCTAGACCTACGGACCAGTT 57.554 47.619 0.00 0.00 0.00 3.16
951 952 3.666345 ATTCTAGACCTACGGACCAGT 57.334 47.619 0.00 0.00 0.00 4.00
952 953 5.340439 AAAATTCTAGACCTACGGACCAG 57.660 43.478 0.00 0.00 0.00 4.00
953 954 4.142315 CGAAAATTCTAGACCTACGGACCA 60.142 45.833 0.00 0.00 0.00 4.02
954 955 4.142293 ACGAAAATTCTAGACCTACGGACC 60.142 45.833 0.00 0.00 0.00 4.46
955 956 4.991472 ACGAAAATTCTAGACCTACGGAC 58.009 43.478 0.00 0.00 0.00 4.79
956 957 5.404946 CAACGAAAATTCTAGACCTACGGA 58.595 41.667 0.00 0.00 0.00 4.69
957 958 4.565564 CCAACGAAAATTCTAGACCTACGG 59.434 45.833 0.00 0.00 0.00 4.02
958 959 5.166398 ACCAACGAAAATTCTAGACCTACG 58.834 41.667 0.00 0.00 0.00 3.51
959 960 6.647895 TCAACCAACGAAAATTCTAGACCTAC 59.352 38.462 0.00 0.00 0.00 3.18
960 961 6.761312 TCAACCAACGAAAATTCTAGACCTA 58.239 36.000 0.00 0.00 0.00 3.08
961 962 5.617252 TCAACCAACGAAAATTCTAGACCT 58.383 37.500 0.00 0.00 0.00 3.85
962 963 5.469084 ACTCAACCAACGAAAATTCTAGACC 59.531 40.000 0.00 0.00 0.00 3.85
963 964 6.541111 ACTCAACCAACGAAAATTCTAGAC 57.459 37.500 0.00 0.00 0.00 2.59
964 965 6.540914 ACAACTCAACCAACGAAAATTCTAGA 59.459 34.615 0.00 0.00 0.00 2.43
965 966 6.632834 CACAACTCAACCAACGAAAATTCTAG 59.367 38.462 0.00 0.00 0.00 2.43
966 967 6.094325 ACACAACTCAACCAACGAAAATTCTA 59.906 34.615 0.00 0.00 0.00 2.10
967 968 5.105917 ACACAACTCAACCAACGAAAATTCT 60.106 36.000 0.00 0.00 0.00 2.40
968 969 5.099575 ACACAACTCAACCAACGAAAATTC 58.900 37.500 0.00 0.00 0.00 2.17
969 970 5.066968 ACACAACTCAACCAACGAAAATT 57.933 34.783 0.00 0.00 0.00 1.82
970 971 4.712122 ACACAACTCAACCAACGAAAAT 57.288 36.364 0.00 0.00 0.00 1.82
971 972 4.506886 AACACAACTCAACCAACGAAAA 57.493 36.364 0.00 0.00 0.00 2.29
972 973 4.506886 AAACACAACTCAACCAACGAAA 57.493 36.364 0.00 0.00 0.00 3.46
973 974 4.435784 CGTAAACACAACTCAACCAACGAA 60.436 41.667 0.00 0.00 0.00 3.85
974 975 3.062369 CGTAAACACAACTCAACCAACGA 59.938 43.478 0.00 0.00 0.00 3.85
975 976 3.062369 TCGTAAACACAACTCAACCAACG 59.938 43.478 0.00 0.00 0.00 4.10
976 977 4.603231 TCGTAAACACAACTCAACCAAC 57.397 40.909 0.00 0.00 0.00 3.77
977 978 4.273969 GGATCGTAAACACAACTCAACCAA 59.726 41.667 0.00 0.00 0.00 3.67
978 979 3.810941 GGATCGTAAACACAACTCAACCA 59.189 43.478 0.00 0.00 0.00 3.67
979 980 4.062991 AGGATCGTAAACACAACTCAACC 58.937 43.478 0.00 0.00 0.00 3.77
986 987 9.970395 ACGAAATATATAGGATCGTAAACACAA 57.030 29.630 14.80 0.00 44.08 3.33
1030 1031 9.973661 TTATTTGAAAAGGAGGTCATCTAATGA 57.026 29.630 0.00 0.00 36.84 2.57
1058 1059 9.878667 TCGACTGAGTTGTCCATTATTTATTTA 57.121 29.630 0.00 0.00 33.70 1.40
1059 1060 8.786826 TCGACTGAGTTGTCCATTATTTATTT 57.213 30.769 0.00 0.00 33.70 1.40
1060 1061 7.495934 CCTCGACTGAGTTGTCCATTATTTATT 59.504 37.037 0.00 0.00 40.85 1.40
1061 1062 6.986817 CCTCGACTGAGTTGTCCATTATTTAT 59.013 38.462 0.00 0.00 40.85 1.40
1062 1063 6.338146 CCTCGACTGAGTTGTCCATTATTTA 58.662 40.000 0.00 0.00 40.85 1.40
1063 1064 5.178797 CCTCGACTGAGTTGTCCATTATTT 58.821 41.667 0.00 0.00 40.85 1.40
1064 1065 4.759782 CCTCGACTGAGTTGTCCATTATT 58.240 43.478 0.00 0.00 40.85 1.40
1065 1066 3.430929 GCCTCGACTGAGTTGTCCATTAT 60.431 47.826 0.00 0.00 40.85 1.28
1066 1067 2.094182 GCCTCGACTGAGTTGTCCATTA 60.094 50.000 0.00 0.00 40.85 1.90
1067 1068 1.338200 GCCTCGACTGAGTTGTCCATT 60.338 52.381 0.00 0.00 40.85 3.16
1082 1083 0.171231 TGATCTGAGTTGTCGCCTCG 59.829 55.000 0.00 0.00 0.00 4.63
1151 1152 0.533755 CCAACCCGATGCTCCTCATC 60.534 60.000 0.00 0.00 46.32 2.92
1207 1208 1.139947 GGAGCGACCTTCTTCTCCG 59.860 63.158 0.00 0.00 36.18 4.63
1229 1230 1.742831 GGATCGCACCAAACATAGCAA 59.257 47.619 0.00 0.00 0.00 3.91
1253 1254 0.107410 GGGCAATGTGTACCGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
1374 1375 8.878211 AGTCTGAATATCATTCATATCACCACT 58.122 33.333 2.26 0.00 0.00 4.00
1531 1535 2.549082 TCCTCCCCACGGTGTTATTTA 58.451 47.619 7.45 0.00 0.00 1.40
1542 1546 1.202818 GCACCTTATCATCCTCCCCAC 60.203 57.143 0.00 0.00 0.00 4.61
1591 1595 2.112815 GCAGGCATTCCGTACACCC 61.113 63.158 0.00 0.00 37.47 4.61
1613 1617 0.321919 CATCAGGCCGGTCATATGGG 60.322 60.000 9.71 0.00 0.00 4.00
1634 1638 5.095490 GGTTCAAAGATCATTTTAGCCACG 58.905 41.667 0.00 0.00 0.00 4.94
1642 1646 4.933400 GCATGCAAGGTTCAAAGATCATTT 59.067 37.500 14.21 0.00 0.00 2.32
1667 1671 2.483714 CGGGAGTAATACAGCAGCACAT 60.484 50.000 0.00 0.00 0.00 3.21
1707 1711 2.158914 CCTCGTCATGATCCATGGACAA 60.159 50.000 18.99 8.81 41.66 3.18
1821 1828 9.057089 ACCAAATTCATCGTCCTCTATTAAATC 57.943 33.333 0.00 0.00 0.00 2.17
1892 1899 8.062065 TCCTTACTTTCACACTCAAAATTTGT 57.938 30.769 5.56 0.00 0.00 2.83
1897 1904 6.377146 AGCTTTCCTTACTTTCACACTCAAAA 59.623 34.615 0.00 0.00 0.00 2.44
1925 1932 4.142271 CCTTGTGCAACTTTTACAGGACAA 60.142 41.667 0.00 0.00 39.45 3.18
1977 1984 4.328712 GTGTCCAAACCATGAAAACACAAC 59.671 41.667 0.00 0.00 37.04 3.32
1986 1993 2.487086 CCTCACAGTGTCCAAACCATGA 60.487 50.000 0.00 0.00 0.00 3.07
2009 2016 2.180276 CTCTTCTCTTCTTTCCCGGGA 58.820 52.381 22.63 22.63 0.00 5.14
2031 2038 0.753867 TGAAACGTCCTGCTACCACA 59.246 50.000 0.00 0.00 0.00 4.17
2064 2074 7.123098 AGCACCACTTTCATAATCAATGATGAA 59.877 33.333 0.00 0.00 44.13 2.57
2070 2080 4.336433 CGGAGCACCACTTTCATAATCAAT 59.664 41.667 0.00 0.00 35.59 2.57
2071 2081 3.689161 CGGAGCACCACTTTCATAATCAA 59.311 43.478 0.00 0.00 35.59 2.57
2229 2239 8.651389 CATAAGTAAAAGGAGACATGATCCCTA 58.349 37.037 15.30 5.40 37.57 3.53
2255 2265 3.299503 ACATATTGTGATCCCCAAAGGC 58.700 45.455 0.00 0.00 34.51 4.35
2277 2291 8.932791 GCTTGCAAAATTAGTGAAGTACTACTA 58.067 33.333 0.00 0.00 41.48 1.82
2299 2313 5.233689 GCTTACACCCGTAGTAAATAGCTTG 59.766 44.000 0.00 0.00 31.66 4.01
2367 2386 2.125269 AGGTTATCACACGGGCGC 60.125 61.111 0.00 0.00 0.00 6.53
2368 2387 1.079405 ACAGGTTATCACACGGGCG 60.079 57.895 0.00 0.00 0.00 6.13
2373 2392 4.941263 TCAATTAGCCACAGGTTATCACAC 59.059 41.667 0.00 0.00 0.00 3.82
2379 2398 6.990349 GCTATAACTCAATTAGCCACAGGTTA 59.010 38.462 0.00 0.00 0.00 2.85
2384 2403 6.649155 TCAAGCTATAACTCAATTAGCCACA 58.351 36.000 0.00 0.00 34.56 4.17
2411 2431 5.895636 ATTCCGCAATCTGAACAATAACA 57.104 34.783 0.00 0.00 0.00 2.41
2428 2448 3.313526 CCTCTGTATGCCAAAGAATTCCG 59.686 47.826 0.65 0.00 0.00 4.30
2680 2788 4.963318 TCCAGTTGATGAGAGAACTGTT 57.037 40.909 0.00 0.00 45.09 3.16
2681 2789 5.105146 GGTATCCAGTTGATGAGAGAACTGT 60.105 44.000 0.00 0.00 45.09 3.55
2682 2790 5.355596 GGTATCCAGTTGATGAGAGAACTG 58.644 45.833 0.00 0.00 45.79 3.16
2965 4175 4.036262 TGATGAAACCGTGAAGTCTTTTGG 59.964 41.667 0.00 0.00 0.00 3.28
3107 4317 9.483916 GCTGGTTGTTTATTAAATGGTTAGTTT 57.516 29.630 0.00 0.00 0.00 2.66
3108 4318 8.092068 GGCTGGTTGTTTATTAAATGGTTAGTT 58.908 33.333 0.00 0.00 0.00 2.24
3109 4319 7.233757 TGGCTGGTTGTTTATTAAATGGTTAGT 59.766 33.333 0.00 0.00 0.00 2.24
3118 4328 5.133941 TCAGTGTGGCTGGTTGTTTATTAA 58.866 37.500 0.00 0.00 45.08 1.40
3126 4336 1.656441 GCTTCAGTGTGGCTGGTTG 59.344 57.895 0.00 0.00 45.08 3.77
3184 4394 7.362401 GCAAGCAATAAATGAAGAAAGAGAGGA 60.362 37.037 0.00 0.00 0.00 3.71
3185 4395 6.750963 GCAAGCAATAAATGAAGAAAGAGAGG 59.249 38.462 0.00 0.00 0.00 3.69
3186 4396 6.750963 GGCAAGCAATAAATGAAGAAAGAGAG 59.249 38.462 0.00 0.00 0.00 3.20
3188 4398 6.309737 GTGGCAAGCAATAAATGAAGAAAGAG 59.690 38.462 0.00 0.00 0.00 2.85
3189 4399 6.158598 GTGGCAAGCAATAAATGAAGAAAGA 58.841 36.000 0.00 0.00 0.00 2.52
3190 4400 5.927689 TGTGGCAAGCAATAAATGAAGAAAG 59.072 36.000 0.00 0.00 0.00 2.62
3191 4401 5.851720 TGTGGCAAGCAATAAATGAAGAAA 58.148 33.333 0.00 0.00 0.00 2.52
3193 4403 5.653507 GATGTGGCAAGCAATAAATGAAGA 58.346 37.500 0.00 0.00 0.00 2.87
3194 4404 4.501559 CGATGTGGCAAGCAATAAATGAAG 59.498 41.667 0.00 0.00 0.00 3.02
3195 4405 4.082300 ACGATGTGGCAAGCAATAAATGAA 60.082 37.500 0.00 0.00 0.00 2.57
3196 4406 3.443329 ACGATGTGGCAAGCAATAAATGA 59.557 39.130 0.00 0.00 0.00 2.57
3197 4407 3.772932 ACGATGTGGCAAGCAATAAATG 58.227 40.909 0.00 0.00 0.00 2.32
3198 4408 3.696051 AGACGATGTGGCAAGCAATAAAT 59.304 39.130 0.00 0.00 0.00 1.40
3199 4409 3.081061 AGACGATGTGGCAAGCAATAAA 58.919 40.909 0.00 0.00 0.00 1.40
3200 4410 2.710377 AGACGATGTGGCAAGCAATAA 58.290 42.857 0.00 0.00 0.00 1.40
3201 4411 2.401583 AGACGATGTGGCAAGCAATA 57.598 45.000 0.00 0.00 0.00 1.90
3202 4412 2.401583 TAGACGATGTGGCAAGCAAT 57.598 45.000 0.00 0.00 0.00 3.56
3203 4413 2.401583 ATAGACGATGTGGCAAGCAA 57.598 45.000 0.00 0.00 0.00 3.91
3204 4414 2.401583 AATAGACGATGTGGCAAGCA 57.598 45.000 0.00 0.00 0.00 3.91
3205 4415 3.764885 AAAATAGACGATGTGGCAAGC 57.235 42.857 0.00 0.00 0.00 4.01
3206 4416 6.851222 AGATAAAATAGACGATGTGGCAAG 57.149 37.500 0.00 0.00 0.00 4.01
3207 4417 7.722363 TCTAGATAAAATAGACGATGTGGCAA 58.278 34.615 0.00 0.00 0.00 4.52
3208 4418 7.284919 TCTAGATAAAATAGACGATGTGGCA 57.715 36.000 0.00 0.00 0.00 4.92
3209 4419 8.589335 TTTCTAGATAAAATAGACGATGTGGC 57.411 34.615 0.00 0.00 0.00 5.01
3226 4436 8.982723 AGGTAGTAACATCACACATTTCTAGAT 58.017 33.333 0.00 0.00 0.00 1.98
3227 4437 8.251026 CAGGTAGTAACATCACACATTTCTAGA 58.749 37.037 0.00 0.00 0.00 2.43
3228 4438 8.035394 ACAGGTAGTAACATCACACATTTCTAG 58.965 37.037 0.00 0.00 0.00 2.43
3229 4439 7.817478 CACAGGTAGTAACATCACACATTTCTA 59.183 37.037 0.00 0.00 0.00 2.10
3230 4440 6.650807 CACAGGTAGTAACATCACACATTTCT 59.349 38.462 0.00 0.00 0.00 2.52
3231 4441 6.426937 ACACAGGTAGTAACATCACACATTTC 59.573 38.462 0.00 0.00 0.00 2.17
3232 4442 6.296026 ACACAGGTAGTAACATCACACATTT 58.704 36.000 0.00 0.00 0.00 2.32
3233 4443 5.865085 ACACAGGTAGTAACATCACACATT 58.135 37.500 0.00 0.00 0.00 2.71
3234 4444 5.483685 ACACAGGTAGTAACATCACACAT 57.516 39.130 0.00 0.00 0.00 3.21
3235 4445 4.948341 ACACAGGTAGTAACATCACACA 57.052 40.909 0.00 0.00 0.00 3.72
3236 4446 6.453092 AGTAACACAGGTAGTAACATCACAC 58.547 40.000 0.00 0.00 0.00 3.82
3237 4447 6.294899 GGAGTAACACAGGTAGTAACATCACA 60.295 42.308 0.00 0.00 0.00 3.58
3238 4448 6.098017 GGAGTAACACAGGTAGTAACATCAC 58.902 44.000 0.00 0.00 0.00 3.06
3239 4449 5.186409 GGGAGTAACACAGGTAGTAACATCA 59.814 44.000 0.00 0.00 0.00 3.07
3240 4450 5.186409 TGGGAGTAACACAGGTAGTAACATC 59.814 44.000 0.00 0.00 0.00 3.06
3241 4451 5.088730 TGGGAGTAACACAGGTAGTAACAT 58.911 41.667 0.00 0.00 0.00 2.71
3242 4452 4.482030 TGGGAGTAACACAGGTAGTAACA 58.518 43.478 0.00 0.00 0.00 2.41
3243 4453 5.672421 ATGGGAGTAACACAGGTAGTAAC 57.328 43.478 0.00 0.00 34.42 2.50
3244 4454 7.147620 CCATAATGGGAGTAACACAGGTAGTAA 60.148 40.741 0.00 0.00 34.42 2.24
3245 4455 6.325545 CCATAATGGGAGTAACACAGGTAGTA 59.674 42.308 0.00 0.00 34.42 1.82
3246 4456 5.130477 CCATAATGGGAGTAACACAGGTAGT 59.870 44.000 0.00 0.00 34.42 2.73
3247 4457 5.365605 TCCATAATGGGAGTAACACAGGTAG 59.634 44.000 0.00 0.00 38.32 3.18
3248 4458 5.282129 TCCATAATGGGAGTAACACAGGTA 58.718 41.667 0.00 0.00 38.32 3.08
3249 4459 4.108570 TCCATAATGGGAGTAACACAGGT 58.891 43.478 0.00 0.00 38.32 4.00
3250 4460 4.771114 TCCATAATGGGAGTAACACAGG 57.229 45.455 0.00 0.00 38.32 4.00
3251 4461 7.067496 ACTATCCATAATGGGAGTAACACAG 57.933 40.000 0.00 0.00 41.08 3.66
3252 4462 7.446106 AACTATCCATAATGGGAGTAACACA 57.554 36.000 0.00 0.00 41.08 3.72
3253 4463 9.490379 CTAAACTATCCATAATGGGAGTAACAC 57.510 37.037 0.00 0.00 41.08 3.32
3254 4464 9.442062 TCTAAACTATCCATAATGGGAGTAACA 57.558 33.333 0.00 0.00 41.08 2.41
3255 4465 9.930693 CTCTAAACTATCCATAATGGGAGTAAC 57.069 37.037 0.00 0.00 41.08 2.50
3256 4466 9.101325 CCTCTAAACTATCCATAATGGGAGTAA 57.899 37.037 0.00 0.00 41.08 2.24
3257 4467 8.461854 TCCTCTAAACTATCCATAATGGGAGTA 58.538 37.037 0.00 0.00 41.08 2.59
3258 4468 7.235812 GTCCTCTAAACTATCCATAATGGGAGT 59.764 40.741 0.00 0.00 41.08 3.85
3259 4469 7.235606 TGTCCTCTAAACTATCCATAATGGGAG 59.764 40.741 0.00 0.00 41.08 4.30
3260 4470 7.079700 TGTCCTCTAAACTATCCATAATGGGA 58.920 38.462 0.00 0.00 42.21 4.37
3261 4471 7.235606 TCTGTCCTCTAAACTATCCATAATGGG 59.764 40.741 0.00 0.00 38.32 4.00
3262 4472 8.195165 TCTGTCCTCTAAACTATCCATAATGG 57.805 38.462 0.00 0.00 39.43 3.16
3266 4476 9.535170 CCTTATCTGTCCTCTAAACTATCCATA 57.465 37.037 0.00 0.00 0.00 2.74
3267 4477 8.013667 ACCTTATCTGTCCTCTAAACTATCCAT 58.986 37.037 0.00 0.00 0.00 3.41
3268 4478 7.363031 ACCTTATCTGTCCTCTAAACTATCCA 58.637 38.462 0.00 0.00 0.00 3.41
3269 4479 7.842887 ACCTTATCTGTCCTCTAAACTATCC 57.157 40.000 0.00 0.00 0.00 2.59
3273 4483 9.322769 TCTTTTACCTTATCTGTCCTCTAAACT 57.677 33.333 0.00 0.00 0.00 2.66
3274 4484 9.589111 CTCTTTTACCTTATCTGTCCTCTAAAC 57.411 37.037 0.00 0.00 0.00 2.01
3275 4485 8.759782 CCTCTTTTACCTTATCTGTCCTCTAAA 58.240 37.037 0.00 0.00 0.00 1.85
3282 4492 5.952347 TCCCCTCTTTTACCTTATCTGTC 57.048 43.478 0.00 0.00 0.00 3.51
3286 4496 4.127907 CGCTTCCCCTCTTTTACCTTATC 58.872 47.826 0.00 0.00 0.00 1.75
3295 4505 2.757077 CCACCGCTTCCCCTCTTT 59.243 61.111 0.00 0.00 0.00 2.52
3374 4584 5.123820 CGAGCCACTAAATCCTTTTTCATCA 59.876 40.000 0.00 0.00 0.00 3.07
3377 4587 3.190535 GCGAGCCACTAAATCCTTTTTCA 59.809 43.478 0.00 0.00 0.00 2.69
3382 4592 3.065575 CGCGAGCCACTAAATCCTT 57.934 52.632 0.00 0.00 0.00 3.36
3407 4617 6.061441 TCAGAGAAAATGTTGCTTTAGGTCA 58.939 36.000 0.00 0.00 0.00 4.02
3442 4673 8.194769 GTGGTAAGAAGAAAGTGAAAAATGGAA 58.805 33.333 0.00 0.00 0.00 3.53
3443 4674 7.201875 GGTGGTAAGAAGAAAGTGAAAAATGGA 60.202 37.037 0.00 0.00 0.00 3.41
3444 4675 6.923508 GGTGGTAAGAAGAAAGTGAAAAATGG 59.076 38.462 0.00 0.00 0.00 3.16
3445 4676 6.923508 GGGTGGTAAGAAGAAAGTGAAAAATG 59.076 38.462 0.00 0.00 0.00 2.32
3446 4677 6.041637 GGGGTGGTAAGAAGAAAGTGAAAAAT 59.958 38.462 0.00 0.00 0.00 1.82
3447 4678 5.361571 GGGGTGGTAAGAAGAAAGTGAAAAA 59.638 40.000 0.00 0.00 0.00 1.94
3448 4679 4.891168 GGGGTGGTAAGAAGAAAGTGAAAA 59.109 41.667 0.00 0.00 0.00 2.29
3474 4708 7.837202 TCATACTTATAAACAAGGTTGGACG 57.163 36.000 0.00 0.00 0.00 4.79
3577 4811 4.475135 GAGGAGGCAAGCCCCGTC 62.475 72.222 7.62 3.28 36.58 4.79
3581 4815 3.803162 GAGGGAGGAGGCAAGCCC 61.803 72.222 7.62 0.00 41.00 5.19
3582 4816 3.803162 GGAGGGAGGAGGCAAGCC 61.803 72.222 2.02 2.02 0.00 4.35
3583 4817 4.168291 CGGAGGGAGGAGGCAAGC 62.168 72.222 0.00 0.00 0.00 4.01
3584 4818 4.168291 GCGGAGGGAGGAGGCAAG 62.168 72.222 0.00 0.00 0.00 4.01
3595 4829 4.899239 GATGGGAGCACGCGGAGG 62.899 72.222 12.47 0.00 0.00 4.30
3596 4830 1.810606 ATAGATGGGAGCACGCGGAG 61.811 60.000 12.47 3.23 0.00 4.63
3597 4831 0.538746 TATAGATGGGAGCACGCGGA 60.539 55.000 12.47 0.00 0.00 5.54
3598 4832 0.388649 GTATAGATGGGAGCACGCGG 60.389 60.000 12.47 0.00 0.00 6.46
3599 4833 0.598562 AGTATAGATGGGAGCACGCG 59.401 55.000 3.53 3.53 0.00 6.01
3600 4834 2.355717 GAGTATAGATGGGAGCACGC 57.644 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.