Multiple sequence alignment - TraesCS7A01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G086400 chr7A 100.000 2150 0 0 1 2150 50426445 50424296 0.000000e+00 3971.0
1 TraesCS7A01G086400 chr7A 79.858 988 134 42 708 1646 9823865 9824836 0.000000e+00 662.0
2 TraesCS7A01G086400 chr7A 79.858 988 134 42 708 1646 9880442 9881413 0.000000e+00 662.0
3 TraesCS7A01G086400 chr7A 96.748 369 12 0 12 380 536955079 536955447 1.240000e-172 616.0
4 TraesCS7A01G086400 chr7A 78.634 908 129 31 794 1670 50633553 50634426 2.140000e-150 542.0
5 TraesCS7A01G086400 chr7A 85.185 405 56 3 1127 1527 9976989 9977393 1.750000e-111 412.0
6 TraesCS7A01G086400 chr7A 100.000 78 0 0 2369 2446 50424077 50424000 7.050000e-31 145.0
7 TraesCS7A01G086400 chr7D 95.188 1434 58 6 510 1936 47809585 47808156 0.000000e+00 2255.0
8 TraesCS7A01G086400 chr7D 80.947 908 137 16 794 1670 48257340 48258242 0.000000e+00 686.0
9 TraesCS7A01G086400 chr7D 80.931 902 133 19 794 1662 48173612 48174507 0.000000e+00 676.0
10 TraesCS7A01G086400 chr7D 80.820 902 134 19 794 1662 48166625 48167520 0.000000e+00 671.0
11 TraesCS7A01G086400 chr7D 80.440 910 138 18 794 1669 48127671 48128574 0.000000e+00 658.0
12 TraesCS7A01G086400 chr7D 80.286 908 141 19 794 1669 48209635 48210536 0.000000e+00 651.0
13 TraesCS7A01G086400 chr7D 80.633 821 119 23 756 1538 47516182 47517000 1.250000e-167 599.0
14 TraesCS7A01G086400 chr7D 81.110 757 105 22 933 1652 22414415 22413660 2.730000e-159 571.0
15 TraesCS7A01G086400 chr7D 83.969 524 79 3 1127 1646 10725779 10726301 4.700000e-137 497.0
16 TraesCS7A01G086400 chr7D 90.625 192 10 3 1967 2150 47808153 47807962 5.220000e-62 248.0
17 TraesCS7A01G086400 chr4A 86.698 1496 128 35 578 2030 662451493 662452960 0.000000e+00 1594.0
18 TraesCS7A01G086400 chr4A 95.628 366 16 0 11 376 138461842 138461477 2.710000e-164 588.0
19 TraesCS7A01G086400 chr4A 82.922 527 85 3 1130 1652 727966179 727965654 1.020000e-128 470.0
20 TraesCS7A01G086400 chr4A 82.748 313 25 7 794 1105 663211513 663211797 4.040000e-63 252.0
21 TraesCS7A01G086400 chr2A 97.808 365 8 0 12 376 73688751 73689115 4.440000e-177 630.0
22 TraesCS7A01G086400 chr2A 97.003 367 11 0 10 376 606503770 606503404 3.460000e-173 617.0
23 TraesCS7A01G086400 chr2A 96.448 366 13 0 11 376 514505618 514505253 2.690000e-169 604.0
24 TraesCS7A01G086400 chr2A 95.405 370 17 0 7 376 471732718 471732349 7.530000e-165 590.0
25 TraesCS7A01G086400 chr2A 84.783 138 18 3 377 513 513058732 513058597 4.240000e-28 135.0
26 TraesCS7A01G086400 chr2A 82.090 134 22 1 377 510 680098729 680098860 1.990000e-21 113.0
27 TraesCS7A01G086400 chr6A 96.458 367 13 0 10 376 302548474 302548840 7.480000e-170 606.0
28 TraesCS7A01G086400 chr1A 96.438 365 13 0 12 376 485122011 485122375 9.680000e-169 603.0
29 TraesCS7A01G086400 chr3A 95.913 367 15 0 10 376 184641528 184641162 1.620000e-166 595.0
30 TraesCS7A01G086400 chr6D 88.148 135 12 3 377 510 453963446 453963577 9.050000e-35 158.0
31 TraesCS7A01G086400 chr4B 88.793 116 10 2 377 491 638159070 638159183 3.280000e-29 139.0
32 TraesCS7A01G086400 chr2D 83.942 137 17 3 377 510 572800618 572800752 2.550000e-25 126.0
33 TraesCS7A01G086400 chr3D 83.582 134 16 5 377 508 609899933 609899804 1.190000e-23 121.0
34 TraesCS7A01G086400 chr3D 86.869 99 10 2 416 513 253590949 253590853 9.250000e-20 108.0
35 TraesCS7A01G086400 chr5A 82.828 99 14 2 400 497 546578362 546578266 4.330000e-13 86.1
36 TraesCS7A01G086400 chr2B 85.714 77 10 1 407 482 421079695 421079619 2.020000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G086400 chr7A 50424000 50426445 2445 True 2058.0 3971 100.0000 1 2446 2 chr7A.!!$R1 2445
1 TraesCS7A01G086400 chr7A 9823865 9824836 971 False 662.0 662 79.8580 708 1646 1 chr7A.!!$F1 938
2 TraesCS7A01G086400 chr7A 9880442 9881413 971 False 662.0 662 79.8580 708 1646 1 chr7A.!!$F2 938
3 TraesCS7A01G086400 chr7A 50633553 50634426 873 False 542.0 542 78.6340 794 1670 1 chr7A.!!$F4 876
4 TraesCS7A01G086400 chr7D 47807962 47809585 1623 True 1251.5 2255 92.9065 510 2150 2 chr7D.!!$R2 1640
5 TraesCS7A01G086400 chr7D 48257340 48258242 902 False 686.0 686 80.9470 794 1670 1 chr7D.!!$F7 876
6 TraesCS7A01G086400 chr7D 48173612 48174507 895 False 676.0 676 80.9310 794 1662 1 chr7D.!!$F5 868
7 TraesCS7A01G086400 chr7D 48166625 48167520 895 False 671.0 671 80.8200 794 1662 1 chr7D.!!$F4 868
8 TraesCS7A01G086400 chr7D 48127671 48128574 903 False 658.0 658 80.4400 794 1669 1 chr7D.!!$F3 875
9 TraesCS7A01G086400 chr7D 48209635 48210536 901 False 651.0 651 80.2860 794 1669 1 chr7D.!!$F6 875
10 TraesCS7A01G086400 chr7D 47516182 47517000 818 False 599.0 599 80.6330 756 1538 1 chr7D.!!$F2 782
11 TraesCS7A01G086400 chr7D 22413660 22414415 755 True 571.0 571 81.1100 933 1652 1 chr7D.!!$R1 719
12 TraesCS7A01G086400 chr7D 10725779 10726301 522 False 497.0 497 83.9690 1127 1646 1 chr7D.!!$F1 519
13 TraesCS7A01G086400 chr4A 662451493 662452960 1467 False 1594.0 1594 86.6980 578 2030 1 chr4A.!!$F1 1452
14 TraesCS7A01G086400 chr4A 727965654 727966179 525 True 470.0 470 82.9220 1130 1652 1 chr4A.!!$R2 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.107459 GAAGGTCTAGGCAGGGCAAG 60.107 60.0 0.0 0.0 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2113 0.027979 CGGTGCTATCACAATTGCCG 59.972 55.0 5.05 3.9 44.87 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.118313 TCATGCATGACCTCTGTTGG 57.882 50.000 25.42 0.00 0.00 3.77
20 21 1.629861 TCATGCATGACCTCTGTTGGA 59.370 47.619 25.42 0.00 0.00 3.53
21 22 2.040145 TCATGCATGACCTCTGTTGGAA 59.960 45.455 25.42 0.00 0.00 3.53
22 23 2.655090 TGCATGACCTCTGTTGGAAA 57.345 45.000 0.00 0.00 0.00 3.13
23 24 2.942804 TGCATGACCTCTGTTGGAAAA 58.057 42.857 0.00 0.00 0.00 2.29
24 25 2.886523 TGCATGACCTCTGTTGGAAAAG 59.113 45.455 0.00 0.00 0.00 2.27
25 26 2.229784 GCATGACCTCTGTTGGAAAAGG 59.770 50.000 0.00 0.00 34.94 3.11
26 27 1.981256 TGACCTCTGTTGGAAAAGGC 58.019 50.000 0.00 0.00 31.79 4.35
27 28 1.214175 TGACCTCTGTTGGAAAAGGCA 59.786 47.619 0.00 0.00 31.79 4.75
28 29 1.882623 GACCTCTGTTGGAAAAGGCAG 59.117 52.381 0.00 0.00 31.79 4.85
29 30 1.215423 ACCTCTGTTGGAAAAGGCAGT 59.785 47.619 0.00 0.00 31.79 4.40
30 31 1.610522 CCTCTGTTGGAAAAGGCAGTG 59.389 52.381 0.00 0.00 0.00 3.66
31 32 1.000938 CTCTGTTGGAAAAGGCAGTGC 60.001 52.381 6.55 6.55 0.00 4.40
48 49 2.737830 CCTAGGAGGCGCTTAGGC 59.262 66.667 13.16 0.00 39.21 3.93
57 58 3.706140 CGCTTAGGCACGCTTAGG 58.294 61.111 0.00 0.00 38.60 2.69
58 59 2.526120 CGCTTAGGCACGCTTAGGC 61.526 63.158 5.36 5.36 38.60 3.93
68 69 4.464262 GCTTAGGCGCTAGGCAAT 57.536 55.556 7.64 0.00 46.16 3.56
69 70 1.944778 GCTTAGGCGCTAGGCAATG 59.055 57.895 7.64 0.00 46.16 2.82
70 71 1.510480 GCTTAGGCGCTAGGCAATGG 61.510 60.000 7.64 0.00 46.16 3.16
71 72 1.510480 CTTAGGCGCTAGGCAATGGC 61.510 60.000 7.64 0.00 46.16 4.40
87 88 3.195698 GCCAAACGCCTCGCCTAG 61.196 66.667 0.00 0.00 0.00 3.02
89 90 2.511600 CAAACGCCTCGCCTAGGG 60.512 66.667 11.72 0.44 46.65 3.53
90 91 4.468689 AAACGCCTCGCCTAGGGC 62.469 66.667 11.72 4.14 46.65 5.19
104 105 4.713792 CCTAGGGCATAAATGAAGGTCT 57.286 45.455 0.00 0.00 0.00 3.85
105 106 5.825593 CCTAGGGCATAAATGAAGGTCTA 57.174 43.478 0.00 0.00 0.00 2.59
106 107 5.799213 CCTAGGGCATAAATGAAGGTCTAG 58.201 45.833 0.00 0.00 0.00 2.43
107 108 4.713792 AGGGCATAAATGAAGGTCTAGG 57.286 45.455 0.00 0.00 0.00 3.02
108 109 3.149981 GGGCATAAATGAAGGTCTAGGC 58.850 50.000 0.00 0.00 0.00 3.93
109 110 3.435026 GGGCATAAATGAAGGTCTAGGCA 60.435 47.826 0.00 0.00 0.00 4.75
110 111 3.817647 GGCATAAATGAAGGTCTAGGCAG 59.182 47.826 0.00 0.00 0.00 4.85
111 112 3.817647 GCATAAATGAAGGTCTAGGCAGG 59.182 47.826 0.00 0.00 0.00 4.85
112 113 4.392940 CATAAATGAAGGTCTAGGCAGGG 58.607 47.826 0.00 0.00 0.00 4.45
113 114 0.548510 AATGAAGGTCTAGGCAGGGC 59.451 55.000 0.00 0.00 0.00 5.19
114 115 0.621571 ATGAAGGTCTAGGCAGGGCA 60.622 55.000 0.00 0.00 0.00 5.36
115 116 0.840288 TGAAGGTCTAGGCAGGGCAA 60.840 55.000 0.00 0.00 0.00 4.52
116 117 0.107459 GAAGGTCTAGGCAGGGCAAG 60.107 60.000 0.00 0.00 0.00 4.01
117 118 2.124529 GGTCTAGGCAGGGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
118 119 2.671070 GTCTAGGCAGGGCAAGCA 59.329 61.111 2.86 0.00 0.00 3.91
119 120 1.002134 GTCTAGGCAGGGCAAGCAA 60.002 57.895 2.86 0.00 0.00 3.91
120 121 1.028868 GTCTAGGCAGGGCAAGCAAG 61.029 60.000 2.86 0.30 0.00 4.01
121 122 1.751927 CTAGGCAGGGCAAGCAAGG 60.752 63.158 2.86 0.00 0.00 3.61
122 123 2.202236 CTAGGCAGGGCAAGCAAGGA 62.202 60.000 2.86 0.00 0.00 3.36
123 124 1.788518 TAGGCAGGGCAAGCAAGGAA 61.789 55.000 2.86 0.00 0.00 3.36
124 125 1.986210 GGCAGGGCAAGCAAGGAAT 60.986 57.895 2.86 0.00 0.00 3.01
125 126 1.547472 GGCAGGGCAAGCAAGGAATT 61.547 55.000 2.86 0.00 0.00 2.17
126 127 0.390735 GCAGGGCAAGCAAGGAATTG 60.391 55.000 0.00 0.00 0.00 2.32
138 139 3.281332 GGAATTGCCTACCCAAGCA 57.719 52.632 0.00 0.00 37.18 3.91
143 144 2.373335 TTGCCTACCCAAGCAAGAAA 57.627 45.000 0.00 0.00 43.74 2.52
144 145 2.603075 TGCCTACCCAAGCAAGAAAT 57.397 45.000 0.00 0.00 35.69 2.17
145 146 2.446435 TGCCTACCCAAGCAAGAAATC 58.554 47.619 0.00 0.00 35.69 2.17
146 147 2.224992 TGCCTACCCAAGCAAGAAATCA 60.225 45.455 0.00 0.00 35.69 2.57
147 148 3.026694 GCCTACCCAAGCAAGAAATCAT 58.973 45.455 0.00 0.00 0.00 2.45
148 149 3.181483 GCCTACCCAAGCAAGAAATCATG 60.181 47.826 0.00 0.00 0.00 3.07
149 150 3.181483 CCTACCCAAGCAAGAAATCATGC 60.181 47.826 2.56 2.56 40.51 4.06
150 151 2.250031 ACCCAAGCAAGAAATCATGCA 58.750 42.857 12.51 0.00 42.43 3.96
151 152 2.835764 ACCCAAGCAAGAAATCATGCAT 59.164 40.909 12.51 0.00 42.43 3.96
152 153 3.118884 ACCCAAGCAAGAAATCATGCATC 60.119 43.478 12.51 0.00 42.43 3.91
153 154 3.118920 CCCAAGCAAGAAATCATGCATCA 60.119 43.478 12.51 0.00 42.43 3.07
154 155 4.442893 CCCAAGCAAGAAATCATGCATCAT 60.443 41.667 12.51 0.00 42.43 2.45
155 156 5.221362 CCCAAGCAAGAAATCATGCATCATA 60.221 40.000 12.51 0.00 42.43 2.15
156 157 6.455647 CCAAGCAAGAAATCATGCATCATAT 58.544 36.000 12.51 0.00 42.43 1.78
157 158 6.929049 CCAAGCAAGAAATCATGCATCATATT 59.071 34.615 12.51 0.00 42.43 1.28
158 159 7.095649 CCAAGCAAGAAATCATGCATCATATTG 60.096 37.037 12.51 7.08 42.43 1.90
159 160 5.926542 AGCAAGAAATCATGCATCATATTGC 59.073 36.000 15.64 15.64 42.43 3.56
170 171 4.669318 GCATCATATTGCACTGATATGCC 58.331 43.478 10.72 1.32 45.50 4.40
171 172 4.157105 GCATCATATTGCACTGATATGCCA 59.843 41.667 10.72 0.00 45.50 4.92
172 173 5.336134 GCATCATATTGCACTGATATGCCAA 60.336 40.000 10.72 0.00 45.50 4.52
173 174 6.683715 CATCATATTGCACTGATATGCCAAA 58.316 36.000 10.72 0.00 45.50 3.28
174 175 6.075762 TCATATTGCACTGATATGCCAAAC 57.924 37.500 10.72 0.00 45.50 2.93
175 176 2.917701 TTGCACTGATATGCCAAACG 57.082 45.000 0.00 0.00 45.50 3.60
176 177 0.451383 TGCACTGATATGCCAAACGC 59.549 50.000 0.00 0.00 45.50 4.84
177 178 0.589729 GCACTGATATGCCAAACGCG 60.590 55.000 3.53 3.53 42.08 6.01
178 179 0.726827 CACTGATATGCCAAACGCGT 59.273 50.000 5.58 5.58 42.08 6.01
179 180 1.130373 CACTGATATGCCAAACGCGTT 59.870 47.619 20.79 20.79 42.08 4.84
180 181 2.350192 CACTGATATGCCAAACGCGTTA 59.650 45.455 26.87 10.14 42.08 3.18
181 182 3.002246 CACTGATATGCCAAACGCGTTAT 59.998 43.478 26.87 17.15 42.08 1.89
182 183 4.210328 CACTGATATGCCAAACGCGTTATA 59.790 41.667 26.87 18.81 42.08 0.98
183 184 4.994852 ACTGATATGCCAAACGCGTTATAT 59.005 37.500 26.87 22.52 42.08 0.86
184 185 5.468746 ACTGATATGCCAAACGCGTTATATT 59.531 36.000 26.87 6.48 42.08 1.28
185 186 5.922546 TGATATGCCAAACGCGTTATATTC 58.077 37.500 26.87 16.30 42.08 1.75
186 187 3.619233 ATGCCAAACGCGTTATATTCC 57.381 42.857 26.87 10.96 42.08 3.01
187 188 2.357075 TGCCAAACGCGTTATATTCCA 58.643 42.857 26.87 13.37 42.08 3.53
188 189 2.747989 TGCCAAACGCGTTATATTCCAA 59.252 40.909 26.87 3.04 42.08 3.53
189 190 3.378742 TGCCAAACGCGTTATATTCCAAT 59.621 39.130 26.87 2.57 42.08 3.16
190 191 3.728718 GCCAAACGCGTTATATTCCAATG 59.271 43.478 26.87 15.69 0.00 2.82
191 192 3.728718 CCAAACGCGTTATATTCCAATGC 59.271 43.478 26.87 0.00 35.10 3.56
192 193 4.346970 CAAACGCGTTATATTCCAATGCA 58.653 39.130 26.87 0.00 37.70 3.96
193 194 3.878086 ACGCGTTATATTCCAATGCAG 57.122 42.857 5.58 0.00 37.70 4.41
194 195 3.202906 ACGCGTTATATTCCAATGCAGT 58.797 40.909 5.58 0.00 37.70 4.40
195 196 4.373527 ACGCGTTATATTCCAATGCAGTA 58.626 39.130 5.58 0.00 37.70 2.74
196 197 4.447724 ACGCGTTATATTCCAATGCAGTAG 59.552 41.667 5.58 0.00 37.70 2.57
197 198 4.684242 CGCGTTATATTCCAATGCAGTAGA 59.316 41.667 0.00 0.00 37.70 2.59
198 199 5.388475 CGCGTTATATTCCAATGCAGTAGAC 60.388 44.000 0.00 0.00 37.70 2.59
199 200 5.465390 GCGTTATATTCCAATGCAGTAGACA 59.535 40.000 0.00 0.00 37.74 3.41
200 201 6.346919 GCGTTATATTCCAATGCAGTAGACAG 60.347 42.308 0.00 0.00 37.74 3.51
201 202 6.701841 CGTTATATTCCAATGCAGTAGACAGT 59.298 38.462 0.00 0.00 0.00 3.55
202 203 7.865889 CGTTATATTCCAATGCAGTAGACAGTA 59.134 37.037 0.00 0.00 0.00 2.74
203 204 9.542462 GTTATATTCCAATGCAGTAGACAGTAA 57.458 33.333 0.00 0.00 0.00 2.24
208 209 7.843490 TCCAATGCAGTAGACAGTAATTAAC 57.157 36.000 0.00 0.00 0.00 2.01
209 210 7.620880 TCCAATGCAGTAGACAGTAATTAACT 58.379 34.615 0.00 0.00 39.81 2.24
210 211 8.100791 TCCAATGCAGTAGACAGTAATTAACTT 58.899 33.333 0.00 0.00 35.76 2.66
211 212 9.378551 CCAATGCAGTAGACAGTAATTAACTTA 57.621 33.333 0.00 0.00 35.76 2.24
241 242 6.969993 TGCCCTAAAATAATATCAACACCC 57.030 37.500 0.00 0.00 0.00 4.61
242 243 6.436027 TGCCCTAAAATAATATCAACACCCA 58.564 36.000 0.00 0.00 0.00 4.51
243 244 7.072562 TGCCCTAAAATAATATCAACACCCAT 58.927 34.615 0.00 0.00 0.00 4.00
244 245 8.228206 TGCCCTAAAATAATATCAACACCCATA 58.772 33.333 0.00 0.00 0.00 2.74
245 246 9.255029 GCCCTAAAATAATATCAACACCCATAT 57.745 33.333 0.00 0.00 0.00 1.78
286 287 9.646336 CACTATGAGTAAAAACAATATTACCGC 57.354 33.333 0.00 0.00 33.47 5.68
287 288 8.833493 ACTATGAGTAAAAACAATATTACCGCC 58.167 33.333 0.00 0.00 33.47 6.13
288 289 7.875327 ATGAGTAAAAACAATATTACCGCCT 57.125 32.000 0.00 0.00 33.47 5.52
289 290 8.967664 ATGAGTAAAAACAATATTACCGCCTA 57.032 30.769 0.00 0.00 33.47 3.93
290 291 8.428186 TGAGTAAAAACAATATTACCGCCTAG 57.572 34.615 0.00 0.00 33.47 3.02
292 293 5.509716 AAAAACAATATTACCGCCTAGGC 57.490 39.130 24.75 24.75 46.52 3.93
293 294 2.853235 ACAATATTACCGCCTAGGCC 57.147 50.000 28.09 10.55 46.52 5.19
294 295 2.051692 ACAATATTACCGCCTAGGCCA 58.948 47.619 28.09 10.72 46.52 5.36
295 296 2.224450 ACAATATTACCGCCTAGGCCAC 60.224 50.000 28.09 1.00 46.52 5.01
296 297 1.724545 ATATTACCGCCTAGGCCACA 58.275 50.000 28.09 9.95 46.52 4.17
297 298 0.754472 TATTACCGCCTAGGCCACAC 59.246 55.000 28.09 0.17 46.52 3.82
298 299 1.979619 ATTACCGCCTAGGCCACACC 61.980 60.000 28.09 0.00 46.52 4.16
308 309 4.410400 GCCACACCTAGGGCGCTT 62.410 66.667 14.81 0.00 40.93 4.68
309 310 3.026431 GCCACACCTAGGGCGCTTA 62.026 63.158 14.81 0.00 40.93 3.09
310 311 1.144057 CCACACCTAGGGCGCTTAG 59.856 63.158 14.81 9.86 0.00 2.18
311 312 1.144057 CACACCTAGGGCGCTTAGG 59.856 63.158 26.46 26.46 42.78 2.69
312 313 2.109181 CACCTAGGGCGCTTAGGC 59.891 66.667 27.40 5.38 41.16 3.93
313 314 2.041819 ACCTAGGGCGCTTAGGCT 60.042 61.111 27.40 17.05 45.89 4.58
314 315 2.134933 ACCTAGGGCGCTTAGGCTC 61.135 63.158 27.40 4.03 45.89 4.70
315 316 2.737830 CTAGGGCGCTTAGGCTCC 59.262 66.667 9.23 0.00 45.89 4.70
316 317 3.214250 CTAGGGCGCTTAGGCTCCG 62.214 68.421 9.23 0.00 43.70 4.63
327 328 2.838225 GGCTCCGCCTAGGCACTA 60.838 66.667 32.47 16.09 46.69 2.74
352 353 3.497031 GCCAACCGCCTCGCTTAC 61.497 66.667 0.00 0.00 0.00 2.34
353 354 3.186047 CCAACCGCCTCGCTTACG 61.186 66.667 0.00 0.00 42.01 3.18
354 355 3.849953 CAACCGCCTCGCTTACGC 61.850 66.667 0.00 0.00 39.84 4.42
357 358 3.896133 CCGCCTCGCTTACGCCTA 61.896 66.667 0.00 0.00 39.84 3.93
358 359 2.654404 CGCCTCGCTTACGCCTAC 60.654 66.667 0.00 0.00 39.84 3.18
359 360 2.279318 GCCTCGCTTACGCCTACC 60.279 66.667 0.00 0.00 39.84 3.18
360 361 2.025727 CCTCGCTTACGCCTACCG 59.974 66.667 0.00 0.00 44.21 4.02
361 362 2.654404 CTCGCTTACGCCTACCGC 60.654 66.667 0.00 0.00 41.76 5.68
362 363 3.122250 CTCGCTTACGCCTACCGCT 62.122 63.158 0.00 0.00 41.76 5.52
363 364 2.202703 CGCTTACGCCTACCGCTT 60.203 61.111 0.00 0.00 41.76 4.68
364 365 1.808390 CGCTTACGCCTACCGCTTT 60.808 57.895 0.00 0.00 41.76 3.51
365 366 1.356527 CGCTTACGCCTACCGCTTTT 61.357 55.000 0.00 0.00 41.76 2.27
366 367 0.800631 GCTTACGCCTACCGCTTTTT 59.199 50.000 0.00 0.00 41.76 1.94
367 368 1.201998 GCTTACGCCTACCGCTTTTTC 60.202 52.381 0.00 0.00 41.76 2.29
368 369 1.395954 CTTACGCCTACCGCTTTTTCC 59.604 52.381 0.00 0.00 41.76 3.13
369 370 0.321021 TACGCCTACCGCTTTTTCCA 59.679 50.000 0.00 0.00 41.76 3.53
370 371 0.535553 ACGCCTACCGCTTTTTCCAA 60.536 50.000 0.00 0.00 41.76 3.53
371 372 0.109919 CGCCTACCGCTTTTTCCAAC 60.110 55.000 0.00 0.00 34.21 3.77
372 373 0.242825 GCCTACCGCTTTTTCCAACC 59.757 55.000 0.00 0.00 0.00 3.77
373 374 1.905637 CCTACCGCTTTTTCCAACCT 58.094 50.000 0.00 0.00 0.00 3.50
374 375 2.235891 CCTACCGCTTTTTCCAACCTT 58.764 47.619 0.00 0.00 0.00 3.50
375 376 2.030274 CCTACCGCTTTTTCCAACCTTG 60.030 50.000 0.00 0.00 0.00 3.61
376 377 1.480789 ACCGCTTTTTCCAACCTTGT 58.519 45.000 0.00 0.00 0.00 3.16
377 378 1.136110 ACCGCTTTTTCCAACCTTGTG 59.864 47.619 0.00 0.00 0.00 3.33
378 379 1.208259 CGCTTTTTCCAACCTTGTGC 58.792 50.000 0.00 0.00 0.00 4.57
379 380 1.470632 CGCTTTTTCCAACCTTGTGCA 60.471 47.619 0.00 0.00 0.00 4.57
380 381 2.802774 CGCTTTTTCCAACCTTGTGCAT 60.803 45.455 0.00 0.00 0.00 3.96
381 382 2.545106 GCTTTTTCCAACCTTGTGCATG 59.455 45.455 0.00 0.00 0.00 4.06
382 383 3.740764 GCTTTTTCCAACCTTGTGCATGA 60.741 43.478 0.00 0.00 0.00 3.07
383 384 3.451141 TTTTCCAACCTTGTGCATGAC 57.549 42.857 0.00 0.00 0.00 3.06
384 385 2.064434 TTCCAACCTTGTGCATGACA 57.936 45.000 0.00 0.00 0.00 3.58
450 451 8.948631 TTATATTCAACGCTCTCTTTCTCATT 57.051 30.769 0.00 0.00 0.00 2.57
451 452 7.856145 ATATTCAACGCTCTCTTTCTCATTT 57.144 32.000 0.00 0.00 0.00 2.32
452 453 8.948631 ATATTCAACGCTCTCTTTCTCATTTA 57.051 30.769 0.00 0.00 0.00 1.40
453 454 6.712241 TTCAACGCTCTCTTTCTCATTTAG 57.288 37.500 0.00 0.00 0.00 1.85
454 455 5.784177 TCAACGCTCTCTTTCTCATTTAGT 58.216 37.500 0.00 0.00 0.00 2.24
455 456 6.223852 TCAACGCTCTCTTTCTCATTTAGTT 58.776 36.000 0.00 0.00 0.00 2.24
456 457 6.366332 TCAACGCTCTCTTTCTCATTTAGTTC 59.634 38.462 0.00 0.00 0.00 3.01
457 458 6.031751 ACGCTCTCTTTCTCATTTAGTTCT 57.968 37.500 0.00 0.00 0.00 3.01
458 459 7.159322 ACGCTCTCTTTCTCATTTAGTTCTA 57.841 36.000 0.00 0.00 0.00 2.10
459 460 7.777095 ACGCTCTCTTTCTCATTTAGTTCTAT 58.223 34.615 0.00 0.00 0.00 1.98
460 461 7.704472 ACGCTCTCTTTCTCATTTAGTTCTATG 59.296 37.037 0.00 0.00 0.00 2.23
461 462 7.918033 CGCTCTCTTTCTCATTTAGTTCTATGA 59.082 37.037 0.00 0.00 0.00 2.15
462 463 9.030301 GCTCTCTTTCTCATTTAGTTCTATGAC 57.970 37.037 0.00 0.00 0.00 3.06
464 465 9.862371 TCTCTTTCTCATTTAGTTCTATGACAC 57.138 33.333 0.00 0.00 0.00 3.67
465 466 9.092876 CTCTTTCTCATTTAGTTCTATGACACC 57.907 37.037 0.00 0.00 0.00 4.16
466 467 8.816894 TCTTTCTCATTTAGTTCTATGACACCT 58.183 33.333 0.00 0.00 0.00 4.00
467 468 9.092876 CTTTCTCATTTAGTTCTATGACACCTC 57.907 37.037 0.00 0.00 0.00 3.85
468 469 7.718334 TCTCATTTAGTTCTATGACACCTCA 57.282 36.000 0.00 0.00 0.00 3.86
469 470 8.311395 TCTCATTTAGTTCTATGACACCTCAT 57.689 34.615 0.00 0.00 40.47 2.90
470 471 8.417106 TCTCATTTAGTTCTATGACACCTCATC 58.583 37.037 0.00 0.00 38.21 2.92
471 472 8.078060 TCATTTAGTTCTATGACACCTCATCA 57.922 34.615 0.00 0.00 38.21 3.07
472 473 8.539544 TCATTTAGTTCTATGACACCTCATCAA 58.460 33.333 0.00 0.00 38.21 2.57
473 474 9.166173 CATTTAGTTCTATGACACCTCATCAAA 57.834 33.333 0.00 0.00 38.21 2.69
474 475 9.739276 ATTTAGTTCTATGACACCTCATCAAAA 57.261 29.630 0.00 0.00 38.21 2.44
475 476 9.739276 TTTAGTTCTATGACACCTCATCAAAAT 57.261 29.630 0.00 0.00 38.21 1.82
476 477 9.739276 TTAGTTCTATGACACCTCATCAAAATT 57.261 29.630 0.00 0.00 38.21 1.82
478 479 9.911788 AGTTCTATGACACCTCATCAAAATTAT 57.088 29.630 0.00 0.00 38.21 1.28
489 490 9.289782 ACCTCATCAAAATTATCTATAGTTGGC 57.710 33.333 0.00 0.00 0.00 4.52
490 491 9.288576 CCTCATCAAAATTATCTATAGTTGGCA 57.711 33.333 0.00 0.00 0.00 4.92
499 500 9.453572 AATTATCTATAGTTGGCATGTATGGTG 57.546 33.333 0.00 0.00 0.00 4.17
500 501 4.641396 TCTATAGTTGGCATGTATGGTGC 58.359 43.478 0.00 0.00 41.78 5.01
501 502 3.582998 ATAGTTGGCATGTATGGTGCT 57.417 42.857 0.00 0.00 42.16 4.40
502 503 4.705110 ATAGTTGGCATGTATGGTGCTA 57.295 40.909 0.00 0.00 42.16 3.49
503 504 3.582998 AGTTGGCATGTATGGTGCTAT 57.417 42.857 0.00 0.00 42.16 2.97
504 505 3.480470 AGTTGGCATGTATGGTGCTATC 58.520 45.455 0.00 0.00 42.16 2.08
505 506 3.137176 AGTTGGCATGTATGGTGCTATCT 59.863 43.478 0.00 0.00 42.16 1.98
506 507 4.347876 AGTTGGCATGTATGGTGCTATCTA 59.652 41.667 0.00 0.00 42.16 1.98
507 508 5.013495 AGTTGGCATGTATGGTGCTATCTAT 59.987 40.000 0.00 0.00 42.16 1.98
508 509 4.835678 TGGCATGTATGGTGCTATCTATG 58.164 43.478 0.00 0.00 42.16 2.23
529 530 0.967380 CACCTTGGAGCATTGGGACC 60.967 60.000 0.00 0.00 0.00 4.46
532 533 3.936772 TTGGAGCATTGGGACCGCC 62.937 63.158 0.00 0.00 0.00 6.13
635 639 9.299963 GCATTCAATGTTGTGCTATTTAATACA 57.700 29.630 0.00 0.00 34.85 2.29
665 669 8.714179 ACGAGTTCTACTATCGAATTATCTGAG 58.286 37.037 0.30 0.00 39.66 3.35
726 738 6.485830 AGCTTAAGATATAGTGCACTGGAA 57.514 37.500 29.57 14.33 0.00 3.53
732 744 0.625316 ATAGTGCACTGGAATGCCCA 59.375 50.000 29.57 6.09 45.50 5.36
737 749 0.971959 GCACTGGAATGCCCATGGAA 60.972 55.000 15.22 0.49 45.57 3.53
865 888 9.853555 TTGCAATCTTTTGTAGTACATTAATGG 57.146 29.630 19.37 2.26 35.17 3.16
1055 1091 0.881118 TTCGTCATTGGAAGCCTTGC 59.119 50.000 0.00 0.00 0.00 4.01
1080 1124 6.410845 CGTTTGTGCACAGTGTATGTATATC 58.589 40.000 20.59 0.00 41.41 1.63
1153 1237 5.691754 TCTGCGATACTGCATACTAATGTTG 59.308 40.000 0.00 0.00 45.26 3.33
1205 1289 0.259356 AAACGGGGGTCAACCAAGAA 59.741 50.000 0.89 0.00 42.91 2.52
1220 1304 2.549754 CCAAGAAGATTATGCGGCGAAT 59.450 45.455 12.98 8.93 0.00 3.34
1221 1305 3.548587 CAAGAAGATTATGCGGCGAATG 58.451 45.455 12.98 0.00 0.00 2.67
1225 1309 1.002468 AGATTATGCGGCGAATGCAAC 60.002 47.619 12.98 0.00 46.87 4.17
1267 1351 0.461516 TCGACGTCTGTAGGCGAGAT 60.462 55.000 14.70 0.00 0.00 2.75
1475 1562 7.011950 TCCATATGCTCGAATAATTTGTTCGTT 59.988 33.333 22.21 11.86 46.21 3.85
1492 1579 5.050227 TGTTCGTTGGTAATAAAAGTCACCG 60.050 40.000 0.00 0.00 33.55 4.94
1553 1640 5.013079 AGAGGATATCCCGCATGTTTCAATA 59.987 40.000 18.56 0.00 40.87 1.90
1556 1643 5.705441 GGATATCCCGCATGTTTCAATAGAA 59.295 40.000 11.02 0.00 0.00 2.10
1672 1760 1.914051 CGATTGTCTACTGTGCTCACG 59.086 52.381 0.00 0.00 0.00 4.35
1679 1768 4.238514 GTCTACTGTGCTCACGATTTCTT 58.761 43.478 0.00 0.00 0.00 2.52
1687 1776 2.296190 GCTCACGATTTCTTTTTGGGGT 59.704 45.455 0.00 0.00 0.00 4.95
1700 1789 1.434513 TTGGGGTTCATGAGGCTGGT 61.435 55.000 0.00 0.00 0.00 4.00
1725 1814 4.243007 GGATGTTTCCACAACTTTCCTG 57.757 45.455 0.00 0.00 42.12 3.86
1904 1998 2.670509 GCACTTGATTTTCTCAGCCTGC 60.671 50.000 0.00 0.00 34.68 4.85
1936 2030 4.499696 GGATTTTACTCCATCGGCAAATGG 60.500 45.833 9.72 9.72 46.44 3.16
1946 2040 1.290009 GGCAAATGGTTCGCTGCTT 59.710 52.632 0.00 0.00 35.13 3.91
1953 2047 1.302511 GGTTCGCTGCTTCCTTGGA 60.303 57.895 0.00 0.00 0.00 3.53
1984 2078 4.065281 GACACTACCGCACGGCCT 62.065 66.667 9.43 0.00 39.32 5.19
2055 2149 5.786311 AGCACCGTAATGTAGTTGTCTTTA 58.214 37.500 0.00 0.00 0.00 1.85
2145 2247 5.392272 GGATGGAAAAAGATTTGCCAAATGC 60.392 40.000 7.53 0.00 36.15 3.56
2385 2487 3.171987 GGCAGTGTGCTGTGATCG 58.828 61.111 0.00 0.00 44.28 3.69
2386 2488 1.374631 GGCAGTGTGCTGTGATCGA 60.375 57.895 0.00 0.00 44.28 3.59
2387 2489 0.742281 GGCAGTGTGCTGTGATCGAT 60.742 55.000 0.00 0.00 44.28 3.59
2388 2490 0.649475 GCAGTGTGCTGTGATCGATC 59.351 55.000 18.72 18.72 44.32 3.69
2389 2491 0.919300 CAGTGTGCTGTGATCGATCG 59.081 55.000 20.03 9.36 37.92 3.69
2390 2492 0.179127 AGTGTGCTGTGATCGATCGG 60.179 55.000 20.03 13.35 0.00 4.18
2391 2493 1.141665 TGTGCTGTGATCGATCGGG 59.858 57.895 20.03 13.02 0.00 5.14
2392 2494 2.106938 TGCTGTGATCGATCGGGC 59.893 61.111 20.03 21.07 0.00 6.13
2393 2495 3.032609 GCTGTGATCGATCGGGCG 61.033 66.667 20.03 9.65 0.00 6.13
2394 2496 2.721859 CTGTGATCGATCGGGCGA 59.278 61.111 20.03 0.00 45.22 5.54
2395 2497 1.065764 CTGTGATCGATCGGGCGAA 59.934 57.895 20.03 0.00 44.22 4.70
2396 2498 1.209275 CTGTGATCGATCGGGCGAAC 61.209 60.000 20.03 11.89 44.22 3.95
2397 2499 2.025584 TGATCGATCGGGCGAACG 59.974 61.111 20.03 0.00 44.22 3.95
2398 2500 2.025727 GATCGATCGGGCGAACGT 59.974 61.111 16.41 0.00 44.22 3.99
2399 2501 1.588139 GATCGATCGGGCGAACGTT 60.588 57.895 16.41 0.00 44.22 3.99
2400 2502 1.143969 GATCGATCGGGCGAACGTTT 61.144 55.000 16.41 0.00 44.22 3.60
2401 2503 0.738412 ATCGATCGGGCGAACGTTTT 60.738 50.000 16.41 0.00 44.22 2.43
2402 2504 0.945265 TCGATCGGGCGAACGTTTTT 60.945 50.000 16.41 0.00 40.48 1.94
2403 2505 0.714994 CGATCGGGCGAACGTTTTTA 59.285 50.000 7.38 0.00 36.03 1.52
2404 2506 1.325338 CGATCGGGCGAACGTTTTTAT 59.675 47.619 7.38 0.00 36.03 1.40
2405 2507 2.222863 CGATCGGGCGAACGTTTTTATT 60.223 45.455 7.38 0.00 36.03 1.40
2406 2508 3.725600 CGATCGGGCGAACGTTTTTATTT 60.726 43.478 7.38 0.00 36.03 1.40
2407 2509 3.622627 TCGGGCGAACGTTTTTATTTT 57.377 38.095 0.46 0.00 34.94 1.82
2408 2510 3.553532 TCGGGCGAACGTTTTTATTTTC 58.446 40.909 0.46 0.00 34.94 2.29
2409 2511 2.336189 CGGGCGAACGTTTTTATTTTCG 59.664 45.455 0.46 0.00 42.91 3.46
2410 2512 3.553532 GGGCGAACGTTTTTATTTTCGA 58.446 40.909 0.46 0.00 42.72 3.71
2411 2513 3.358700 GGGCGAACGTTTTTATTTTCGAC 59.641 43.478 0.46 0.00 46.60 4.20
2412 2514 3.967470 GGCGAACGTTTTTATTTTCGACA 59.033 39.130 0.46 0.00 46.57 4.35
2413 2515 4.143967 GGCGAACGTTTTTATTTTCGACAC 60.144 41.667 0.46 0.00 46.57 3.67
2414 2516 4.427676 GCGAACGTTTTTATTTTCGACACG 60.428 41.667 0.46 0.00 42.72 4.49
2415 2517 4.891766 CGAACGTTTTTATTTTCGACACGA 59.108 37.500 0.46 0.00 42.72 4.35
2416 2518 5.557405 CGAACGTTTTTATTTTCGACACGAT 59.443 36.000 0.46 0.00 42.72 3.73
2417 2519 6.236252 CGAACGTTTTTATTTTCGACACGATC 60.236 38.462 0.46 0.00 42.72 3.69
2426 2528 3.245315 GACACGATCGGGCGAACG 61.245 66.667 19.30 0.00 44.19 3.95
2430 2532 3.022914 CGATCGGGCGAACGTAGC 61.023 66.667 7.38 7.33 36.03 3.58
2431 2533 2.103538 GATCGGGCGAACGTAGCA 59.896 61.111 16.16 0.00 36.08 3.49
2432 2534 1.517694 GATCGGGCGAACGTAGCAA 60.518 57.895 16.16 3.55 36.08 3.91
2433 2535 1.749609 GATCGGGCGAACGTAGCAAC 61.750 60.000 16.16 8.48 36.08 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.629861 TCCAACAGAGGTCATGCATGA 59.370 47.619 25.42 25.42 0.00 3.07
1 2 2.118313 TCCAACAGAGGTCATGCATG 57.882 50.000 21.07 21.07 0.00 4.06
2 3 2.885135 TTCCAACAGAGGTCATGCAT 57.115 45.000 0.00 0.00 0.00 3.96
3 4 2.655090 TTTCCAACAGAGGTCATGCA 57.345 45.000 0.00 0.00 0.00 3.96
4 5 2.229784 CCTTTTCCAACAGAGGTCATGC 59.770 50.000 0.00 0.00 0.00 4.06
5 6 2.229784 GCCTTTTCCAACAGAGGTCATG 59.770 50.000 0.00 0.00 0.00 3.07
6 7 2.158475 TGCCTTTTCCAACAGAGGTCAT 60.158 45.455 0.00 0.00 0.00 3.06
7 8 1.214175 TGCCTTTTCCAACAGAGGTCA 59.786 47.619 0.00 0.00 0.00 4.02
8 9 1.882623 CTGCCTTTTCCAACAGAGGTC 59.117 52.381 0.00 0.00 31.67 3.85
9 10 1.215423 ACTGCCTTTTCCAACAGAGGT 59.785 47.619 0.00 0.00 34.25 3.85
10 11 1.610522 CACTGCCTTTTCCAACAGAGG 59.389 52.381 0.00 0.00 34.25 3.69
11 12 1.000938 GCACTGCCTTTTCCAACAGAG 60.001 52.381 0.00 0.00 34.25 3.35
12 13 1.032014 GCACTGCCTTTTCCAACAGA 58.968 50.000 0.00 0.00 34.25 3.41
13 14 0.032540 GGCACTGCCTTTTCCAACAG 59.967 55.000 13.28 0.00 46.69 3.16
14 15 2.123409 GGCACTGCCTTTTCCAACA 58.877 52.632 13.28 0.00 46.69 3.33
31 32 2.134287 TGCCTAAGCGCCTCCTAGG 61.134 63.158 2.29 10.84 44.31 3.02
32 33 1.068250 GTGCCTAAGCGCCTCCTAG 59.932 63.158 2.29 0.00 44.01 3.02
33 34 3.217231 GTGCCTAAGCGCCTCCTA 58.783 61.111 2.29 0.00 44.01 2.94
40 41 2.526120 GCCTAAGCGTGCCTAAGCG 61.526 63.158 0.00 0.00 44.31 4.68
41 42 3.410958 GCCTAAGCGTGCCTAAGC 58.589 61.111 0.00 0.00 40.48 3.09
51 52 1.510480 CCATTGCCTAGCGCCTAAGC 61.510 60.000 2.29 2.53 36.24 3.09
52 53 1.510480 GCCATTGCCTAGCGCCTAAG 61.510 60.000 2.29 0.00 36.24 2.18
53 54 1.525995 GCCATTGCCTAGCGCCTAA 60.526 57.895 2.29 0.00 36.24 2.69
54 55 2.111043 GCCATTGCCTAGCGCCTA 59.889 61.111 2.29 0.00 36.24 3.93
70 71 3.195698 CTAGGCGAGGCGTTTGGC 61.196 66.667 0.00 0.00 42.51 4.52
71 72 2.511600 CCTAGGCGAGGCGTTTGG 60.512 66.667 0.00 0.00 38.96 3.28
72 73 2.511600 CCCTAGGCGAGGCGTTTG 60.512 66.667 8.32 0.00 45.17 2.93
73 74 4.468689 GCCCTAGGCGAGGCGTTT 62.469 66.667 8.32 0.00 45.17 3.60
83 84 4.713792 AGACCTTCATTTATGCCCTAGG 57.286 45.455 0.06 0.06 0.00 3.02
84 85 5.799213 CCTAGACCTTCATTTATGCCCTAG 58.201 45.833 0.00 0.00 0.00 3.02
85 86 4.041691 GCCTAGACCTTCATTTATGCCCTA 59.958 45.833 0.00 0.00 0.00 3.53
86 87 3.181439 GCCTAGACCTTCATTTATGCCCT 60.181 47.826 0.00 0.00 0.00 5.19
87 88 3.149981 GCCTAGACCTTCATTTATGCCC 58.850 50.000 0.00 0.00 0.00 5.36
88 89 3.817647 CTGCCTAGACCTTCATTTATGCC 59.182 47.826 0.00 0.00 0.00 4.40
89 90 3.817647 CCTGCCTAGACCTTCATTTATGC 59.182 47.826 0.00 0.00 0.00 3.14
90 91 4.392940 CCCTGCCTAGACCTTCATTTATG 58.607 47.826 0.00 0.00 0.00 1.90
91 92 3.181439 GCCCTGCCTAGACCTTCATTTAT 60.181 47.826 0.00 0.00 0.00 1.40
92 93 2.172717 GCCCTGCCTAGACCTTCATTTA 59.827 50.000 0.00 0.00 0.00 1.40
93 94 1.064389 GCCCTGCCTAGACCTTCATTT 60.064 52.381 0.00 0.00 0.00 2.32
94 95 0.548510 GCCCTGCCTAGACCTTCATT 59.451 55.000 0.00 0.00 0.00 2.57
95 96 0.621571 TGCCCTGCCTAGACCTTCAT 60.622 55.000 0.00 0.00 0.00 2.57
96 97 0.840288 TTGCCCTGCCTAGACCTTCA 60.840 55.000 0.00 0.00 0.00 3.02
97 98 0.107459 CTTGCCCTGCCTAGACCTTC 60.107 60.000 0.00 0.00 0.00 3.46
98 99 1.994463 CTTGCCCTGCCTAGACCTT 59.006 57.895 0.00 0.00 0.00 3.50
99 100 2.674220 GCTTGCCCTGCCTAGACCT 61.674 63.158 0.00 0.00 0.00 3.85
100 101 2.124529 GCTTGCCCTGCCTAGACC 60.125 66.667 0.00 0.00 0.00 3.85
101 102 1.002134 TTGCTTGCCCTGCCTAGAC 60.002 57.895 0.00 0.00 0.00 2.59
102 103 1.300963 CTTGCTTGCCCTGCCTAGA 59.699 57.895 0.00 0.00 0.00 2.43
103 104 1.751927 CCTTGCTTGCCCTGCCTAG 60.752 63.158 0.00 0.00 0.00 3.02
104 105 1.788518 TTCCTTGCTTGCCCTGCCTA 61.789 55.000 0.00 0.00 0.00 3.93
105 106 2.451462 ATTCCTTGCTTGCCCTGCCT 62.451 55.000 0.00 0.00 0.00 4.75
106 107 1.547472 AATTCCTTGCTTGCCCTGCC 61.547 55.000 0.00 0.00 0.00 4.85
107 108 0.390735 CAATTCCTTGCTTGCCCTGC 60.391 55.000 0.00 0.00 0.00 4.85
108 109 3.826637 CAATTCCTTGCTTGCCCTG 57.173 52.632 0.00 0.00 0.00 4.45
117 118 1.478105 GCTTGGGTAGGCAATTCCTTG 59.522 52.381 2.37 0.00 44.75 3.61
118 119 1.077005 TGCTTGGGTAGGCAATTCCTT 59.923 47.619 2.37 0.00 44.75 3.36
120 121 1.478105 CTTGCTTGGGTAGGCAATTCC 59.522 52.381 0.00 0.00 45.47 3.01
121 122 2.446435 TCTTGCTTGGGTAGGCAATTC 58.554 47.619 0.00 0.00 45.47 2.17
122 123 2.603075 TCTTGCTTGGGTAGGCAATT 57.397 45.000 0.00 0.00 45.47 2.32
123 124 2.603075 TTCTTGCTTGGGTAGGCAAT 57.397 45.000 0.00 0.00 45.47 3.56
124 125 2.373335 TTTCTTGCTTGGGTAGGCAA 57.627 45.000 0.00 0.00 44.64 4.52
125 126 2.224992 TGATTTCTTGCTTGGGTAGGCA 60.225 45.455 0.00 0.00 36.62 4.75
126 127 2.446435 TGATTTCTTGCTTGGGTAGGC 58.554 47.619 0.00 0.00 0.00 3.93
127 128 3.181483 GCATGATTTCTTGCTTGGGTAGG 60.181 47.826 10.28 0.00 41.90 3.18
128 129 3.444742 TGCATGATTTCTTGCTTGGGTAG 59.555 43.478 16.42 0.00 44.41 3.18
129 130 3.429492 TGCATGATTTCTTGCTTGGGTA 58.571 40.909 16.42 0.00 44.41 3.69
130 131 2.250031 TGCATGATTTCTTGCTTGGGT 58.750 42.857 16.42 0.00 44.41 4.51
131 132 3.118920 TGATGCATGATTTCTTGCTTGGG 60.119 43.478 2.46 0.00 44.41 4.12
132 133 4.118093 TGATGCATGATTTCTTGCTTGG 57.882 40.909 2.46 0.00 44.41 3.61
133 134 7.569408 GCAATATGATGCATGATTTCTTGCTTG 60.569 37.037 21.87 12.62 45.70 4.01
134 135 6.423905 GCAATATGATGCATGATTTCTTGCTT 59.576 34.615 21.87 11.59 45.70 3.91
135 136 5.926542 GCAATATGATGCATGATTTCTTGCT 59.073 36.000 21.87 5.46 45.70 3.91
136 137 6.153212 GCAATATGATGCATGATTTCTTGC 57.847 37.500 17.86 17.86 45.70 4.01
148 149 4.157105 TGGCATATCAGTGCAATATGATGC 59.843 41.667 17.33 15.85 46.81 3.91
149 150 5.890424 TGGCATATCAGTGCAATATGATG 57.110 39.130 17.33 8.47 46.81 3.07
150 151 6.569035 CGTTTGGCATATCAGTGCAATATGAT 60.569 38.462 17.33 15.21 46.81 2.45
151 152 5.277925 CGTTTGGCATATCAGTGCAATATGA 60.278 40.000 17.33 9.82 46.81 2.15
152 153 4.913345 CGTTTGGCATATCAGTGCAATATG 59.087 41.667 11.09 11.09 46.81 1.78
153 154 4.557296 GCGTTTGGCATATCAGTGCAATAT 60.557 41.667 0.00 0.00 46.81 1.28
154 155 3.243035 GCGTTTGGCATATCAGTGCAATA 60.243 43.478 0.00 0.00 46.81 1.90
155 156 2.480073 GCGTTTGGCATATCAGTGCAAT 60.480 45.455 0.00 0.00 46.81 3.56
156 157 1.135431 GCGTTTGGCATATCAGTGCAA 60.135 47.619 0.00 0.00 46.81 4.08
157 158 0.451383 GCGTTTGGCATATCAGTGCA 59.549 50.000 1.06 0.00 46.81 4.57
158 159 0.589729 CGCGTTTGGCATATCAGTGC 60.590 55.000 0.00 0.00 43.84 4.40
159 160 0.726827 ACGCGTTTGGCATATCAGTG 59.273 50.000 5.58 0.00 43.84 3.66
160 161 1.448985 AACGCGTTTGGCATATCAGT 58.551 45.000 20.79 0.00 43.84 3.41
161 162 3.878086 ATAACGCGTTTGGCATATCAG 57.122 42.857 31.50 0.00 43.84 2.90
162 163 5.106869 GGAATATAACGCGTTTGGCATATCA 60.107 40.000 31.50 8.96 43.84 2.15
163 164 5.106869 TGGAATATAACGCGTTTGGCATATC 60.107 40.000 31.50 17.62 43.84 1.63
164 165 4.757657 TGGAATATAACGCGTTTGGCATAT 59.242 37.500 31.50 22.14 43.84 1.78
165 166 4.127907 TGGAATATAACGCGTTTGGCATA 58.872 39.130 31.50 20.89 43.84 3.14
166 167 2.946329 TGGAATATAACGCGTTTGGCAT 59.054 40.909 31.50 19.33 43.84 4.40
167 168 2.357075 TGGAATATAACGCGTTTGGCA 58.643 42.857 31.50 12.77 43.84 4.92
168 169 3.408288 TTGGAATATAACGCGTTTGGC 57.592 42.857 31.50 14.61 38.69 4.52
169 170 3.728718 GCATTGGAATATAACGCGTTTGG 59.271 43.478 31.50 8.42 0.00 3.28
170 171 4.346970 TGCATTGGAATATAACGCGTTTG 58.653 39.130 31.50 19.00 0.00 2.93
171 172 4.095782 ACTGCATTGGAATATAACGCGTTT 59.904 37.500 31.50 19.25 0.00 3.60
172 173 3.625764 ACTGCATTGGAATATAACGCGTT 59.374 39.130 29.27 29.27 0.00 4.84
173 174 3.202906 ACTGCATTGGAATATAACGCGT 58.797 40.909 5.58 5.58 0.00 6.01
174 175 3.878086 ACTGCATTGGAATATAACGCG 57.122 42.857 3.53 3.53 0.00 6.01
175 176 5.465390 TGTCTACTGCATTGGAATATAACGC 59.535 40.000 0.00 0.00 0.00 4.84
176 177 6.701841 ACTGTCTACTGCATTGGAATATAACG 59.298 38.462 0.00 0.00 0.00 3.18
177 178 9.542462 TTACTGTCTACTGCATTGGAATATAAC 57.458 33.333 0.00 0.00 0.00 1.89
182 183 8.893727 GTTAATTACTGTCTACTGCATTGGAAT 58.106 33.333 0.00 0.00 0.00 3.01
183 184 8.100791 AGTTAATTACTGTCTACTGCATTGGAA 58.899 33.333 0.00 0.00 35.19 3.53
184 185 7.620880 AGTTAATTACTGTCTACTGCATTGGA 58.379 34.615 0.00 0.00 35.19 3.53
185 186 7.849804 AGTTAATTACTGTCTACTGCATTGG 57.150 36.000 0.00 0.00 35.19 3.16
215 216 9.255029 GGGTGTTGATATTATTTTAGGGCATAT 57.745 33.333 0.00 0.00 0.00 1.78
216 217 8.228206 TGGGTGTTGATATTATTTTAGGGCATA 58.772 33.333 0.00 0.00 0.00 3.14
217 218 7.072562 TGGGTGTTGATATTATTTTAGGGCAT 58.927 34.615 0.00 0.00 0.00 4.40
218 219 6.436027 TGGGTGTTGATATTATTTTAGGGCA 58.564 36.000 0.00 0.00 0.00 5.36
219 220 6.969993 TGGGTGTTGATATTATTTTAGGGC 57.030 37.500 0.00 0.00 0.00 5.19
260 261 9.646336 GCGGTAATATTGTTTTTACTCATAGTG 57.354 33.333 0.00 0.00 0.00 2.74
261 262 8.833493 GGCGGTAATATTGTTTTTACTCATAGT 58.167 33.333 0.00 0.00 0.00 2.12
262 263 9.052759 AGGCGGTAATATTGTTTTTACTCATAG 57.947 33.333 0.00 0.00 0.00 2.23
263 264 8.967664 AGGCGGTAATATTGTTTTTACTCATA 57.032 30.769 0.00 0.00 0.00 2.15
264 265 7.875327 AGGCGGTAATATTGTTTTTACTCAT 57.125 32.000 0.00 0.00 0.00 2.90
265 266 7.496591 CCTAGGCGGTAATATTGTTTTTACTCA 59.503 37.037 0.00 0.00 0.00 3.41
266 267 7.519488 GCCTAGGCGGTAATATTGTTTTTACTC 60.519 40.741 20.16 0.00 34.25 2.59
267 268 6.261603 GCCTAGGCGGTAATATTGTTTTTACT 59.738 38.462 20.16 0.00 34.25 2.24
268 269 6.432936 GCCTAGGCGGTAATATTGTTTTTAC 58.567 40.000 20.16 0.00 34.25 2.01
269 270 5.532032 GGCCTAGGCGGTAATATTGTTTTTA 59.468 40.000 27.24 0.00 43.06 1.52
270 271 4.340097 GGCCTAGGCGGTAATATTGTTTTT 59.660 41.667 27.24 0.00 43.06 1.94
271 272 3.887110 GGCCTAGGCGGTAATATTGTTTT 59.113 43.478 27.24 0.00 43.06 2.43
272 273 3.117813 TGGCCTAGGCGGTAATATTGTTT 60.118 43.478 27.24 0.00 43.06 2.83
273 274 2.440253 TGGCCTAGGCGGTAATATTGTT 59.560 45.455 27.24 0.00 43.06 2.83
274 275 2.051692 TGGCCTAGGCGGTAATATTGT 58.948 47.619 27.24 0.00 43.06 2.71
275 276 2.224426 TGTGGCCTAGGCGGTAATATTG 60.224 50.000 27.24 0.00 43.06 1.90
276 277 2.051692 TGTGGCCTAGGCGGTAATATT 58.948 47.619 27.24 0.00 43.06 1.28
277 278 1.346722 GTGTGGCCTAGGCGGTAATAT 59.653 52.381 27.24 0.00 43.06 1.28
278 279 0.754472 GTGTGGCCTAGGCGGTAATA 59.246 55.000 27.24 8.54 43.06 0.98
279 280 1.525442 GTGTGGCCTAGGCGGTAAT 59.475 57.895 27.24 0.00 43.06 1.89
280 281 2.662070 GGTGTGGCCTAGGCGGTAA 61.662 63.158 27.24 10.19 43.06 2.85
281 282 3.078836 GGTGTGGCCTAGGCGGTA 61.079 66.667 27.24 13.46 43.06 4.02
291 292 2.925162 CTAAGCGCCCTAGGTGTGGC 62.925 65.000 8.29 2.61 44.41 5.01
292 293 1.144057 CTAAGCGCCCTAGGTGTGG 59.856 63.158 8.29 0.00 35.34 4.17
293 294 1.144057 CCTAAGCGCCCTAGGTGTG 59.856 63.158 20.25 7.21 35.34 3.82
294 295 2.732619 GCCTAAGCGCCCTAGGTGT 61.733 63.158 25.98 0.00 35.34 4.16
295 296 2.109181 GCCTAAGCGCCCTAGGTG 59.891 66.667 25.98 9.48 36.10 4.00
296 297 2.041819 AGCCTAAGCGCCCTAGGT 60.042 61.111 25.98 14.82 46.67 3.08
297 298 2.737830 GAGCCTAAGCGCCCTAGG 59.262 66.667 22.97 22.97 46.67 3.02
312 313 3.449349 CCTAGTGCCTAGGCGGAG 58.551 66.667 28.28 22.53 45.64 4.63
318 319 1.068250 GCCTTCGCCTAGTGCCTAG 59.932 63.158 3.06 3.06 36.24 3.02
319 320 3.217231 GCCTTCGCCTAGTGCCTA 58.783 61.111 0.00 0.00 36.24 3.93
335 336 3.497031 GTAAGCGAGGCGGTTGGC 61.497 66.667 13.64 4.02 46.80 4.52
336 337 3.186047 CGTAAGCGAGGCGGTTGG 61.186 66.667 13.64 3.06 46.80 3.77
353 354 0.242825 GGTTGGAAAAAGCGGTAGGC 59.757 55.000 0.00 0.00 44.05 3.93
354 355 1.905637 AGGTTGGAAAAAGCGGTAGG 58.094 50.000 0.00 0.00 0.00 3.18
355 356 2.621526 ACAAGGTTGGAAAAAGCGGTAG 59.378 45.455 0.00 0.00 0.00 3.18
356 357 2.359531 CACAAGGTTGGAAAAAGCGGTA 59.640 45.455 0.00 0.00 0.00 4.02
357 358 1.136110 CACAAGGTTGGAAAAAGCGGT 59.864 47.619 0.00 0.00 0.00 5.68
358 359 1.851658 CACAAGGTTGGAAAAAGCGG 58.148 50.000 0.00 0.00 0.00 5.52
359 360 1.208259 GCACAAGGTTGGAAAAAGCG 58.792 50.000 0.00 0.00 0.00 4.68
360 361 2.307934 TGCACAAGGTTGGAAAAAGC 57.692 45.000 0.00 0.00 0.00 3.51
361 362 3.803778 GTCATGCACAAGGTTGGAAAAAG 59.196 43.478 0.00 0.00 0.00 2.27
362 363 3.196469 TGTCATGCACAAGGTTGGAAAAA 59.804 39.130 0.00 0.00 29.30 1.94
363 364 2.762887 TGTCATGCACAAGGTTGGAAAA 59.237 40.909 0.00 0.00 29.30 2.29
364 365 2.100584 GTGTCATGCACAAGGTTGGAAA 59.899 45.455 13.27 0.00 46.91 3.13
365 366 1.680735 GTGTCATGCACAAGGTTGGAA 59.319 47.619 13.27 0.00 46.91 3.53
366 367 1.317613 GTGTCATGCACAAGGTTGGA 58.682 50.000 13.27 0.00 46.91 3.53
367 368 3.871775 GTGTCATGCACAAGGTTGG 57.128 52.632 13.27 0.00 46.91 3.77
424 425 9.553064 AATGAGAAAGAGAGCGTTGAATATAAT 57.447 29.630 0.00 0.00 0.00 1.28
425 426 8.948631 AATGAGAAAGAGAGCGTTGAATATAA 57.051 30.769 0.00 0.00 0.00 0.98
426 427 8.948631 AAATGAGAAAGAGAGCGTTGAATATA 57.051 30.769 0.00 0.00 0.00 0.86
427 428 7.856145 AAATGAGAAAGAGAGCGTTGAATAT 57.144 32.000 0.00 0.00 0.00 1.28
428 429 8.035394 ACTAAATGAGAAAGAGAGCGTTGAATA 58.965 33.333 0.00 0.00 0.00 1.75
429 430 6.876257 ACTAAATGAGAAAGAGAGCGTTGAAT 59.124 34.615 0.00 0.00 0.00 2.57
430 431 6.223852 ACTAAATGAGAAAGAGAGCGTTGAA 58.776 36.000 0.00 0.00 0.00 2.69
431 432 5.784177 ACTAAATGAGAAAGAGAGCGTTGA 58.216 37.500 0.00 0.00 0.00 3.18
432 433 6.367422 AGAACTAAATGAGAAAGAGAGCGTTG 59.633 38.462 0.00 0.00 0.00 4.10
433 434 6.459923 AGAACTAAATGAGAAAGAGAGCGTT 58.540 36.000 0.00 0.00 0.00 4.84
434 435 6.031751 AGAACTAAATGAGAAAGAGAGCGT 57.968 37.500 0.00 0.00 0.00 5.07
435 436 7.918033 TCATAGAACTAAATGAGAAAGAGAGCG 59.082 37.037 0.00 0.00 0.00 5.03
436 437 9.030301 GTCATAGAACTAAATGAGAAAGAGAGC 57.970 37.037 0.00 0.00 32.93 4.09
438 439 9.862371 GTGTCATAGAACTAAATGAGAAAGAGA 57.138 33.333 0.00 0.00 32.93 3.10
439 440 9.092876 GGTGTCATAGAACTAAATGAGAAAGAG 57.907 37.037 0.00 0.00 32.93 2.85
440 441 8.816894 AGGTGTCATAGAACTAAATGAGAAAGA 58.183 33.333 0.00 0.00 32.93 2.52
441 442 9.092876 GAGGTGTCATAGAACTAAATGAGAAAG 57.907 37.037 0.00 0.00 32.93 2.62
442 443 8.593679 TGAGGTGTCATAGAACTAAATGAGAAA 58.406 33.333 0.00 0.00 32.93 2.52
443 444 8.134202 TGAGGTGTCATAGAACTAAATGAGAA 57.866 34.615 0.00 0.00 32.93 2.87
444 445 7.718334 TGAGGTGTCATAGAACTAAATGAGA 57.282 36.000 0.00 0.00 32.93 3.27
445 446 8.200120 TGATGAGGTGTCATAGAACTAAATGAG 58.800 37.037 0.00 0.00 43.92 2.90
446 447 8.078060 TGATGAGGTGTCATAGAACTAAATGA 57.922 34.615 0.00 0.00 43.92 2.57
447 448 8.722480 TTGATGAGGTGTCATAGAACTAAATG 57.278 34.615 0.00 0.00 43.92 2.32
448 449 9.739276 TTTTGATGAGGTGTCATAGAACTAAAT 57.261 29.630 0.00 0.00 43.92 1.40
449 450 9.739276 ATTTTGATGAGGTGTCATAGAACTAAA 57.261 29.630 0.00 0.00 43.92 1.85
450 451 9.739276 AATTTTGATGAGGTGTCATAGAACTAA 57.261 29.630 0.00 0.00 43.92 2.24
452 453 9.911788 ATAATTTTGATGAGGTGTCATAGAACT 57.088 29.630 0.00 0.00 43.92 3.01
463 464 9.289782 GCCAACTATAGATAATTTTGATGAGGT 57.710 33.333 6.78 0.00 0.00 3.85
464 465 9.288576 TGCCAACTATAGATAATTTTGATGAGG 57.711 33.333 6.78 0.00 0.00 3.86
473 474 9.453572 CACCATACATGCCAACTATAGATAATT 57.546 33.333 6.78 0.00 0.00 1.40
474 475 7.554118 GCACCATACATGCCAACTATAGATAAT 59.446 37.037 6.78 0.00 37.08 1.28
475 476 6.878923 GCACCATACATGCCAACTATAGATAA 59.121 38.462 6.78 0.00 37.08 1.75
476 477 6.213397 AGCACCATACATGCCAACTATAGATA 59.787 38.462 6.78 0.00 44.53 1.98
477 478 5.013495 AGCACCATACATGCCAACTATAGAT 59.987 40.000 6.78 0.00 44.53 1.98
478 479 4.347876 AGCACCATACATGCCAACTATAGA 59.652 41.667 6.78 0.00 44.53 1.98
479 480 4.645535 AGCACCATACATGCCAACTATAG 58.354 43.478 0.00 0.00 44.53 1.31
480 481 4.705110 AGCACCATACATGCCAACTATA 57.295 40.909 0.00 0.00 44.53 1.31
481 482 3.582998 AGCACCATACATGCCAACTAT 57.417 42.857 0.00 0.00 44.53 2.12
482 483 4.347876 AGATAGCACCATACATGCCAACTA 59.652 41.667 0.00 0.00 44.53 2.24
483 484 3.137176 AGATAGCACCATACATGCCAACT 59.863 43.478 0.00 0.00 44.53 3.16
484 485 3.480470 AGATAGCACCATACATGCCAAC 58.520 45.455 0.00 0.00 44.53 3.77
485 486 3.862877 AGATAGCACCATACATGCCAA 57.137 42.857 0.00 0.00 44.53 4.52
486 487 4.531732 TCATAGATAGCACCATACATGCCA 59.468 41.667 0.00 0.00 44.53 4.92
487 488 4.872691 GTCATAGATAGCACCATACATGCC 59.127 45.833 0.00 0.00 44.53 4.40
488 489 5.349817 GTGTCATAGATAGCACCATACATGC 59.650 44.000 0.00 0.00 43.74 4.06
489 490 6.957984 GTGTCATAGATAGCACCATACATG 57.042 41.667 0.00 0.00 0.00 3.21
497 498 4.626042 CTCCAAGGTGTCATAGATAGCAC 58.374 47.826 0.00 0.00 0.00 4.40
498 499 3.070159 GCTCCAAGGTGTCATAGATAGCA 59.930 47.826 0.00 0.00 0.00 3.49
499 500 3.070159 TGCTCCAAGGTGTCATAGATAGC 59.930 47.826 0.00 0.00 0.00 2.97
500 501 4.944619 TGCTCCAAGGTGTCATAGATAG 57.055 45.455 0.00 0.00 0.00 2.08
501 502 5.455183 CCAATGCTCCAAGGTGTCATAGATA 60.455 44.000 0.00 0.00 0.00 1.98
502 503 4.458397 CAATGCTCCAAGGTGTCATAGAT 58.542 43.478 0.00 0.00 0.00 1.98
503 504 3.370846 CCAATGCTCCAAGGTGTCATAGA 60.371 47.826 0.00 0.00 0.00 1.98
504 505 2.947652 CCAATGCTCCAAGGTGTCATAG 59.052 50.000 0.00 0.00 0.00 2.23
505 506 2.357050 CCCAATGCTCCAAGGTGTCATA 60.357 50.000 0.00 0.00 0.00 2.15
506 507 1.617804 CCCAATGCTCCAAGGTGTCAT 60.618 52.381 0.00 0.00 0.00 3.06
507 508 0.251297 CCCAATGCTCCAAGGTGTCA 60.251 55.000 0.00 0.00 0.00 3.58
508 509 0.038166 TCCCAATGCTCCAAGGTGTC 59.962 55.000 0.00 0.00 0.00 3.67
529 530 0.732571 AGTTTCCGTGCATTATGGCG 59.267 50.000 0.00 0.00 35.27 5.69
532 533 4.512944 AGATAGCAGTTTCCGTGCATTATG 59.487 41.667 0.00 0.00 43.82 1.90
585 586 7.775093 TGCCTTTCTCATAAGTAAATAGCATGT 59.225 33.333 0.00 0.00 0.00 3.21
665 669 4.829064 TGCATCAGGTGTCTAACAAAAC 57.171 40.909 0.00 0.00 0.00 2.43
726 738 5.666718 TCCTTAATGAATTTTCCATGGGCAT 59.333 36.000 13.02 3.86 0.00 4.40
732 744 8.081517 TCTTGCATCCTTAATGAATTTTCCAT 57.918 30.769 0.00 0.00 37.59 3.41
737 749 8.081517 TCCAATCTTGCATCCTTAATGAATTT 57.918 30.769 0.00 0.00 37.59 1.82
1055 1091 1.601903 ACATACACTGTGCACAAACGG 59.398 47.619 21.98 11.66 36.48 4.44
1170 1254 4.881850 CCCCGTTTGCTTATTATGAAGACT 59.118 41.667 0.00 0.00 0.00 3.24
1175 1259 3.054287 TGACCCCCGTTTGCTTATTATGA 60.054 43.478 0.00 0.00 0.00 2.15
1176 1260 3.283751 TGACCCCCGTTTGCTTATTATG 58.716 45.455 0.00 0.00 0.00 1.90
1205 1289 1.002468 GTTGCATTCGCCGCATAATCT 60.002 47.619 0.00 0.00 39.58 2.40
1220 1304 0.393448 TGGTAGCGTTGGTAGTTGCA 59.607 50.000 0.00 0.00 0.00 4.08
1221 1305 1.664151 GATGGTAGCGTTGGTAGTTGC 59.336 52.381 0.00 0.00 0.00 4.17
1225 1309 1.133598 TGACGATGGTAGCGTTGGTAG 59.866 52.381 6.34 0.00 42.77 3.18
1267 1351 6.078202 TGCAAAATTTGACGGTTATCTTGA 57.922 33.333 10.26 0.00 0.00 3.02
1475 1562 6.941436 ACCAAATACGGTGACTTTTATTACCA 59.059 34.615 0.00 0.00 38.07 3.25
1492 1579 6.156519 GGACCTGATTGTTCAAACCAAATAC 58.843 40.000 0.00 0.00 0.00 1.89
1553 1640 6.866480 TCAAAGTTTGTCTTGCTGAATTTCT 58.134 32.000 15.08 0.00 36.40 2.52
1556 1643 6.808829 TCATCAAAGTTTGTCTTGCTGAATT 58.191 32.000 15.08 0.00 36.40 2.17
1672 1760 5.482006 CCTCATGAACCCCAAAAAGAAATC 58.518 41.667 0.00 0.00 0.00 2.17
1679 1768 1.631405 CAGCCTCATGAACCCCAAAA 58.369 50.000 0.00 0.00 0.00 2.44
1687 1776 2.673775 TCCAAAACCAGCCTCATGAA 57.326 45.000 0.00 0.00 0.00 2.57
1700 1789 5.188751 AGGAAAGTTGTGGAAACATCCAAAA 59.811 36.000 0.00 0.00 46.14 2.44
1747 1836 2.280797 GAGGGTGCTGCGTTCACA 60.281 61.111 0.00 0.00 36.22 3.58
1748 1837 1.166531 AAAGAGGGTGCTGCGTTCAC 61.167 55.000 0.00 0.00 0.00 3.18
1749 1838 1.148273 AAAGAGGGTGCTGCGTTCA 59.852 52.632 0.00 0.00 0.00 3.18
1750 1839 1.166531 ACAAAGAGGGTGCTGCGTTC 61.167 55.000 0.00 0.00 0.00 3.95
1752 1841 0.107831 TAACAAAGAGGGTGCTGCGT 59.892 50.000 0.00 0.00 0.00 5.24
1753 1842 0.798776 CTAACAAAGAGGGTGCTGCG 59.201 55.000 0.00 0.00 0.00 5.18
1754 1843 0.523519 GCTAACAAAGAGGGTGCTGC 59.476 55.000 0.00 0.00 0.00 5.25
1837 1926 1.459209 TCATGTGTGTTCGTGCGATTC 59.541 47.619 0.00 0.00 0.00 2.52
1904 1998 1.743394 GGAGTAAAATCCACCTTGCCG 59.257 52.381 0.00 0.00 39.34 5.69
1936 2030 0.603975 ACTCCAAGGAAGCAGCGAAC 60.604 55.000 0.00 0.00 0.00 3.95
1946 2040 2.353704 CGTTAGTGATGCACTCCAAGGA 60.354 50.000 2.97 0.00 41.21 3.36
1984 2078 4.144297 CAACAAGGTTTGGAGATCCTTCA 58.856 43.478 0.00 0.00 39.22 3.02
2019 2113 0.027979 CGGTGCTATCACAATTGCCG 59.972 55.000 5.05 3.90 44.87 5.69
2075 2169 2.364647 TCTAGCTCATGATGCCACTCAG 59.635 50.000 11.89 4.71 0.00 3.35
2083 2177 8.833493 TGTATTCAAACAATCTAGCTCATGATG 58.167 33.333 0.00 0.00 0.00 3.07
2115 2217 5.418840 GGCAAATCTTTTTCCATCCTCTACA 59.581 40.000 0.00 0.00 0.00 2.74
2116 2218 5.418840 TGGCAAATCTTTTTCCATCCTCTAC 59.581 40.000 0.00 0.00 0.00 2.59
2130 2232 2.000429 GAGCGCATTTGGCAAATCTT 58.000 45.000 22.02 8.35 45.17 2.40
2371 2473 0.179127 CCGATCGATCACAGCACACT 60.179 55.000 24.40 0.00 0.00 3.55
2372 2474 1.148157 CCCGATCGATCACAGCACAC 61.148 60.000 24.40 0.00 0.00 3.82
2373 2475 1.141665 CCCGATCGATCACAGCACA 59.858 57.895 24.40 0.00 0.00 4.57
2374 2476 2.240500 GCCCGATCGATCACAGCAC 61.241 63.158 24.40 4.42 0.00 4.40
2375 2477 2.106938 GCCCGATCGATCACAGCA 59.893 61.111 24.40 0.00 0.00 4.41
2376 2478 2.954020 TTCGCCCGATCGATCACAGC 62.954 60.000 24.40 20.30 38.37 4.40
2377 2479 1.065764 TTCGCCCGATCGATCACAG 59.934 57.895 24.40 13.09 38.37 3.66
2378 2480 1.226859 GTTCGCCCGATCGATCACA 60.227 57.895 24.40 0.79 38.37 3.58
2379 2481 2.293627 CGTTCGCCCGATCGATCAC 61.294 63.158 24.40 12.79 39.00 3.06
2380 2482 2.025584 CGTTCGCCCGATCGATCA 59.974 61.111 24.40 2.12 39.00 2.92
2381 2483 1.143969 AAACGTTCGCCCGATCGATC 61.144 55.000 18.66 15.68 39.00 3.69
2382 2484 0.738412 AAAACGTTCGCCCGATCGAT 60.738 50.000 18.66 11.82 39.00 3.59
2383 2485 0.945265 AAAAACGTTCGCCCGATCGA 60.945 50.000 18.66 0.00 39.00 3.59
2384 2486 0.714994 TAAAAACGTTCGCCCGATCG 59.285 50.000 8.51 8.51 41.45 3.69
2385 2487 3.394313 AATAAAAACGTTCGCCCGATC 57.606 42.857 0.00 0.00 0.00 3.69
2386 2488 3.835378 AAATAAAAACGTTCGCCCGAT 57.165 38.095 0.00 0.00 0.00 4.18
2387 2489 3.553532 GAAAATAAAAACGTTCGCCCGA 58.446 40.909 0.00 0.00 0.00 5.14
2388 2490 2.336189 CGAAAATAAAAACGTTCGCCCG 59.664 45.455 0.00 0.00 36.77 6.13
2389 2491 3.358700 GTCGAAAATAAAAACGTTCGCCC 59.641 43.478 0.00 0.00 41.92 6.13
2390 2492 3.967470 TGTCGAAAATAAAAACGTTCGCC 59.033 39.130 0.00 0.00 41.92 5.54
2391 2493 4.427676 CGTGTCGAAAATAAAAACGTTCGC 60.428 41.667 0.00 0.00 41.92 4.70
2392 2494 4.891766 TCGTGTCGAAAATAAAAACGTTCG 59.108 37.500 0.00 0.00 43.17 3.95
2393 2495 6.883918 ATCGTGTCGAAAATAAAAACGTTC 57.116 33.333 0.00 0.00 39.99 3.95
2394 2496 6.883918 GATCGTGTCGAAAATAAAAACGTT 57.116 33.333 0.00 0.00 39.99 3.99
2409 2511 2.582202 TACGTTCGCCCGATCGTGTC 62.582 60.000 27.03 1.44 45.99 3.67
2410 2512 2.588146 CTACGTTCGCCCGATCGTGT 62.588 60.000 27.03 11.40 45.99 4.49
2411 2513 1.937846 CTACGTTCGCCCGATCGTG 60.938 63.158 27.03 17.15 45.99 4.35
2413 2515 3.022914 GCTACGTTCGCCCGATCG 61.023 66.667 8.51 8.51 41.45 3.69
2414 2516 1.517694 TTGCTACGTTCGCCCGATC 60.518 57.895 0.00 0.00 0.00 3.69
2415 2517 1.808390 GTTGCTACGTTCGCCCGAT 60.808 57.895 0.00 0.00 0.00 4.18
2416 2518 2.431260 GTTGCTACGTTCGCCCGA 60.431 61.111 0.00 0.00 0.00 5.14
2417 2519 3.834373 CGTTGCTACGTTCGCCCG 61.834 66.667 12.66 0.00 42.72 6.13
2418 2520 3.484547 CCGTTGCTACGTTCGCCC 61.485 66.667 18.90 0.00 46.20 6.13
2419 2521 4.143363 GCCGTTGCTACGTTCGCC 62.143 66.667 18.90 0.00 46.20 5.54
2420 2522 4.479121 CGCCGTTGCTACGTTCGC 62.479 66.667 18.90 13.86 46.20 4.70
2421 2523 4.479121 GCGCCGTTGCTACGTTCG 62.479 66.667 18.90 20.11 46.20 3.95
2422 2524 2.945615 TTGCGCCGTTGCTACGTTC 61.946 57.895 18.90 9.54 46.20 3.95
2423 2525 2.968156 TTGCGCCGTTGCTACGTT 60.968 55.556 18.90 0.00 46.20 3.99
2424 2526 3.708734 GTTGCGCCGTTGCTACGT 61.709 61.111 18.90 0.00 46.20 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.