Multiple sequence alignment - TraesCS7A01G085900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G085900 chr7A 100.000 3545 0 0 1 3545 50112893 50116437 0.000000e+00 6547
1 TraesCS7A01G085900 chr7A 94.481 453 21 4 1 449 553041596 553041144 0.000000e+00 695
2 TraesCS7A01G085900 chr7A 84.211 190 28 2 2284 2472 49910133 49909945 2.170000e-42 183
3 TraesCS7A01G085900 chr4A 93.956 2068 104 12 511 2563 662324612 662326673 0.000000e+00 3107
4 TraesCS7A01G085900 chr4A 92.444 450 22 5 1 446 446953679 446954120 1.800000e-177 632
5 TraesCS7A01G085900 chr4A 90.728 453 34 5 1 445 619422079 619421627 6.550000e-167 597
6 TraesCS7A01G085900 chr4A 81.054 702 94 31 2806 3483 681616631 681615945 1.130000e-144 523
7 TraesCS7A01G085900 chr4A 87.791 172 18 3 2610 2781 661511875 661511707 7.760000e-47 198
8 TraesCS7A01G085900 chr7D 93.330 1829 87 19 1001 2805 47403465 47401648 0.000000e+00 2669
9 TraesCS7A01G085900 chr7D 91.512 377 23 8 631 1001 47403869 47403496 8.780000e-141 510
10 TraesCS7A01G085900 chrUn 92.602 784 40 11 511 1279 296182471 296183251 0.000000e+00 1110
11 TraesCS7A01G085900 chr5D 93.778 450 24 4 1 447 513527440 513526992 0.000000e+00 673
12 TraesCS7A01G085900 chr5D 79.322 295 59 2 2206 2499 341075595 341075302 4.640000e-49 206
13 TraesCS7A01G085900 chr5D 76.515 264 60 2 2193 2455 289074204 289074466 3.690000e-30 143
14 TraesCS7A01G085900 chr6A 93.348 451 23 5 1 446 106477496 106477944 0.000000e+00 660
15 TraesCS7A01G085900 chr6A 81.599 663 89 22 2807 3454 564676773 564676129 5.250000e-143 518
16 TraesCS7A01G085900 chr3A 82.729 689 98 15 2809 3483 328930973 328930292 8.470000e-166 593
17 TraesCS7A01G085900 chr3A 76.622 1048 223 21 1457 2496 66354047 66355080 3.090000e-155 558
18 TraesCS7A01G085900 chr3A 81.195 686 96 23 2805 3476 96228994 96228328 4.060000e-144 521
19 TraesCS7A01G085900 chr3A 81.050 686 97 24 2805 3476 96036012 96035346 1.890000e-142 516
20 TraesCS7A01G085900 chr3A 79.236 419 78 8 1048 1460 66353555 66353970 2.080000e-72 283
21 TraesCS7A01G085900 chr3A 76.638 351 70 10 2161 2506 706923595 706923938 2.170000e-42 183
22 TraesCS7A01G085900 chr6B 90.423 449 38 5 1 445 523204939 523204492 1.420000e-163 586
23 TraesCS7A01G085900 chr2A 90.088 454 39 6 1 449 4644614 4644162 5.100000e-163 584
24 TraesCS7A01G085900 chr2A 75.833 240 54 4 1223 1460 183550327 183550564 6.220000e-23 119
25 TraesCS7A01G085900 chr2B 90.222 450 39 5 1 446 796108274 796108722 1.830000e-162 582
26 TraesCS7A01G085900 chr2B 75.417 240 55 4 1223 1460 231233410 231233647 2.890000e-21 113
27 TraesCS7A01G085900 chr5B 89.556 450 42 5 1 446 468630807 468630359 1.850000e-157 566
28 TraesCS7A01G085900 chr5B 71.375 1062 239 54 1463 2499 400563833 400562812 2.140000e-52 217
29 TraesCS7A01G085900 chr1D 81.331 691 90 26 2806 3476 223365483 223364812 3.140000e-145 525
30 TraesCS7A01G085900 chr1D 81.595 652 98 19 2806 3443 40807692 40807049 1.460000e-143 520
31 TraesCS7A01G085900 chr5A 81.343 670 98 19 2822 3477 567529831 567530487 1.460000e-143 520
32 TraesCS7A01G085900 chr5A 79.322 295 59 2 2206 2499 442291115 442290822 4.640000e-49 206
33 TraesCS7A01G085900 chr5A 79.038 291 59 2 2206 2495 442504895 442504606 7.760000e-47 198
34 TraesCS7A01G085900 chr2D 81.325 664 98 20 2806 3455 589507582 589508233 1.890000e-142 516
35 TraesCS7A01G085900 chr2D 76.250 240 53 4 1223 1460 166609920 166609683 1.340000e-24 124
36 TraesCS7A01G085900 chr1B 79.665 418 76 8 1049 1460 670187762 670187348 3.460000e-75 292
37 TraesCS7A01G085900 chr3B 78.520 419 80 8 1048 1460 90165377 90165791 2.100000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G085900 chr7A 50112893 50116437 3544 False 6547.0 6547 100.000 1 3545 1 chr7A.!!$F1 3544
1 TraesCS7A01G085900 chr4A 662324612 662326673 2061 False 3107.0 3107 93.956 511 2563 1 chr4A.!!$F2 2052
2 TraesCS7A01G085900 chr4A 681615945 681616631 686 True 523.0 523 81.054 2806 3483 1 chr4A.!!$R3 677
3 TraesCS7A01G085900 chr7D 47401648 47403869 2221 True 1589.5 2669 92.421 631 2805 2 chr7D.!!$R1 2174
4 TraesCS7A01G085900 chrUn 296182471 296183251 780 False 1110.0 1110 92.602 511 1279 1 chrUn.!!$F1 768
5 TraesCS7A01G085900 chr6A 564676129 564676773 644 True 518.0 518 81.599 2807 3454 1 chr6A.!!$R1 647
6 TraesCS7A01G085900 chr3A 328930292 328930973 681 True 593.0 593 82.729 2809 3483 1 chr3A.!!$R3 674
7 TraesCS7A01G085900 chr3A 96228328 96228994 666 True 521.0 521 81.195 2805 3476 1 chr3A.!!$R2 671
8 TraesCS7A01G085900 chr3A 96035346 96036012 666 True 516.0 516 81.050 2805 3476 1 chr3A.!!$R1 671
9 TraesCS7A01G085900 chr3A 66353555 66355080 1525 False 420.5 558 77.929 1048 2496 2 chr3A.!!$F2 1448
10 TraesCS7A01G085900 chr5B 400562812 400563833 1021 True 217.0 217 71.375 1463 2499 1 chr5B.!!$R1 1036
11 TraesCS7A01G085900 chr1D 223364812 223365483 671 True 525.0 525 81.331 2806 3476 1 chr1D.!!$R2 670
12 TraesCS7A01G085900 chr1D 40807049 40807692 643 True 520.0 520 81.595 2806 3443 1 chr1D.!!$R1 637
13 TraesCS7A01G085900 chr5A 567529831 567530487 656 False 520.0 520 81.343 2822 3477 1 chr5A.!!$F1 655
14 TraesCS7A01G085900 chr2D 589507582 589508233 651 False 516.0 516 81.325 2806 3455 1 chr2D.!!$F1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.030908 GGATCTCGGCGAAGTACCAG 59.969 60.0 12.13 0.00 0.00 4.00 F
442 443 0.035630 GCACCAGTTGGAGATGCTCT 60.036 55.0 4.92 0.00 38.94 4.09 F
2046 2187 0.029035 CTATGTTCCTCGTCGACCGG 59.971 60.0 10.58 11.02 37.11 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1602 0.249238 GCGCCATCTCAGACAGGTAG 60.249 60.0 0.00 0.00 0.0 3.18 R
2354 2504 0.250901 GAATATGCCGGCCCTCATGT 60.251 55.0 26.77 5.87 0.0 3.21 R
3499 3709 0.400213 ACTGGGTCGCCTGATTTTGA 59.600 50.0 0.00 0.00 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.853142 TCTGCGACCGGGGCCTAT 62.853 66.667 15.99 0.00 0.00 2.57
18 19 4.301027 CTGCGACCGGGGCCTATC 62.301 72.222 15.99 0.00 0.00 2.08
21 22 3.158648 CGACCGGGGCCTATCCAA 61.159 66.667 6.32 0.00 36.21 3.53
22 23 2.829592 GACCGGGGCCTATCCAAG 59.170 66.667 6.32 0.00 36.21 3.61
23 24 3.477578 GACCGGGGCCTATCCAAGC 62.478 68.421 6.32 0.00 36.21 4.01
24 25 4.626081 CCGGGGCCTATCCAAGCG 62.626 72.222 0.84 0.00 36.21 4.68
27 28 4.189580 GGGCCTATCCAAGCGCCA 62.190 66.667 2.29 0.00 41.09 5.69
28 29 2.902343 GGCCTATCCAAGCGCCAC 60.902 66.667 2.29 0.00 39.83 5.01
29 30 3.272334 GCCTATCCAAGCGCCACG 61.272 66.667 2.29 0.00 0.00 4.94
69 70 4.849329 GCCTCGTACGCACTCCGG 62.849 72.222 11.24 0.00 42.52 5.14
70 71 3.129502 CCTCGTACGCACTCCGGA 61.130 66.667 11.24 2.93 42.52 5.14
71 72 2.693762 CCTCGTACGCACTCCGGAA 61.694 63.158 11.24 0.00 42.52 4.30
72 73 1.513586 CTCGTACGCACTCCGGAAC 60.514 63.158 11.24 0.00 42.52 3.62
86 87 4.493747 GAACGACCCGAGGCCGAG 62.494 72.222 0.00 0.00 38.22 4.63
120 121 4.610844 CGGATCTCGGCGAAGTAC 57.389 61.111 12.13 1.81 34.75 2.73
121 122 1.008767 CGGATCTCGGCGAAGTACC 60.009 63.158 12.13 11.10 34.75 3.34
122 123 1.721664 CGGATCTCGGCGAAGTACCA 61.722 60.000 12.13 0.00 34.75 3.25
123 124 0.030908 GGATCTCGGCGAAGTACCAG 59.969 60.000 12.13 0.00 0.00 4.00
124 125 0.595310 GATCTCGGCGAAGTACCAGC 60.595 60.000 12.13 0.00 0.00 4.85
125 126 2.017559 ATCTCGGCGAAGTACCAGCC 62.018 60.000 12.13 12.31 46.88 4.85
128 129 2.047560 GGCGAAGTACCAGCCGTT 60.048 61.111 7.89 0.00 41.53 4.44
129 130 2.388232 GGCGAAGTACCAGCCGTTG 61.388 63.158 7.89 0.00 41.53 4.10
161 162 4.143333 GCCGCGGTAGCCTGAAGA 62.143 66.667 28.70 0.00 41.18 2.87
162 163 2.577059 CCGCGGTAGCCTGAAGAA 59.423 61.111 19.50 0.00 41.18 2.52
163 164 1.810030 CCGCGGTAGCCTGAAGAAC 60.810 63.158 19.50 0.00 41.18 3.01
164 165 1.810030 CGCGGTAGCCTGAAGAACC 60.810 63.158 0.00 0.00 41.18 3.62
165 166 1.295423 GCGGTAGCCTGAAGAACCA 59.705 57.895 0.00 0.00 37.42 3.67
166 167 1.019805 GCGGTAGCCTGAAGAACCAC 61.020 60.000 0.00 0.00 37.42 4.16
167 168 0.736325 CGGTAGCCTGAAGAACCACG 60.736 60.000 0.00 0.00 32.04 4.94
168 169 0.391263 GGTAGCCTGAAGAACCACGG 60.391 60.000 0.00 0.00 32.04 4.94
169 170 1.019805 GTAGCCTGAAGAACCACGGC 61.020 60.000 0.00 0.00 40.99 5.68
170 171 2.501223 TAGCCTGAAGAACCACGGCG 62.501 60.000 4.80 4.80 45.16 6.46
171 172 2.742372 CCTGAAGAACCACGGCGG 60.742 66.667 13.24 0.00 42.50 6.13
172 173 3.423154 CTGAAGAACCACGGCGGC 61.423 66.667 13.24 0.00 39.03 6.53
235 236 4.821589 GCGAGGTTGCGAGGGGAG 62.822 72.222 0.00 0.00 0.00 4.30
236 237 4.148825 CGAGGTTGCGAGGGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
237 238 3.787001 GAGGTTGCGAGGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
257 258 3.452357 CGTAGCTGTGTCTGTGCG 58.548 61.111 0.00 0.00 0.00 5.34
258 259 2.720758 CGTAGCTGTGTCTGTGCGC 61.721 63.158 0.00 0.00 0.00 6.09
259 260 2.430751 TAGCTGTGTCTGTGCGCG 60.431 61.111 0.00 0.00 0.00 6.86
260 261 3.207547 TAGCTGTGTCTGTGCGCGT 62.208 57.895 8.43 0.00 0.00 6.01
261 262 4.360027 GCTGTGTCTGTGCGCGTG 62.360 66.667 8.43 0.00 0.00 5.34
262 263 3.705638 CTGTGTCTGTGCGCGTGG 61.706 66.667 8.43 0.00 0.00 4.94
276 277 3.192922 GTGGCGAGCGCGGTATTT 61.193 61.111 12.41 0.00 43.06 1.40
277 278 2.435234 TGGCGAGCGCGGTATTTT 60.435 55.556 12.41 0.00 43.06 1.82
278 279 1.153608 TGGCGAGCGCGGTATTTTA 60.154 52.632 12.41 0.00 43.06 1.52
279 280 0.531090 TGGCGAGCGCGGTATTTTAT 60.531 50.000 12.41 0.00 43.06 1.40
280 281 1.269673 TGGCGAGCGCGGTATTTTATA 60.270 47.619 12.41 0.00 43.06 0.98
281 282 1.389106 GGCGAGCGCGGTATTTTATAG 59.611 52.381 12.41 0.00 43.06 1.31
282 283 1.389106 GCGAGCGCGGTATTTTATAGG 59.611 52.381 12.41 0.00 38.16 2.57
283 284 1.389106 CGAGCGCGGTATTTTATAGGC 59.611 52.381 12.41 0.00 0.00 3.93
284 285 1.389106 GAGCGCGGTATTTTATAGGCG 59.611 52.381 12.41 0.00 45.72 5.52
285 286 3.941194 CGCGGTATTTTATAGGCGC 57.059 52.632 0.00 0.00 37.08 6.53
286 287 0.092351 CGCGGTATTTTATAGGCGCG 59.908 55.000 0.00 0.00 37.08 6.86
287 288 0.179233 GCGGTATTTTATAGGCGCGC 60.179 55.000 25.94 25.94 0.00 6.86
288 289 0.441145 CGGTATTTTATAGGCGCGCC 59.559 55.000 42.34 42.34 0.00 6.53
289 290 0.441145 GGTATTTTATAGGCGCGCCG 59.559 55.000 41.70 0.00 41.95 6.46
290 291 1.421382 GTATTTTATAGGCGCGCCGA 58.579 50.000 41.70 38.31 41.95 5.54
291 292 1.794116 GTATTTTATAGGCGCGCCGAA 59.206 47.619 41.70 33.81 41.95 4.30
292 293 0.865769 ATTTTATAGGCGCGCCGAAG 59.134 50.000 41.70 0.00 41.95 3.79
293 294 1.768112 TTTTATAGGCGCGCCGAAGC 61.768 55.000 41.70 20.39 41.95 3.86
309 310 2.403586 GCGGCGTGCCAAATCTAC 59.596 61.111 12.06 0.00 37.76 2.59
310 311 3.098555 CGGCGTGCCAAATCTACC 58.901 61.111 12.06 0.00 35.37 3.18
311 312 2.808958 CGGCGTGCCAAATCTACCG 61.809 63.158 12.06 0.00 35.37 4.02
312 313 2.403586 GCGTGCCAAATCTACCGC 59.596 61.111 0.00 0.00 0.00 5.68
313 314 2.701006 CGTGCCAAATCTACCGCG 59.299 61.111 0.00 0.00 0.00 6.46
314 315 2.403586 GTGCCAAATCTACCGCGC 59.596 61.111 0.00 0.00 0.00 6.86
315 316 2.822255 TGCCAAATCTACCGCGCC 60.822 61.111 0.00 0.00 0.00 6.53
316 317 3.937062 GCCAAATCTACCGCGCCG 61.937 66.667 0.00 0.00 0.00 6.46
317 318 3.937062 CCAAATCTACCGCGCCGC 61.937 66.667 0.00 0.00 0.00 6.53
355 356 2.435410 CGGTAAGTTCCCGCCACC 60.435 66.667 0.00 0.00 38.85 4.61
356 357 2.435410 GGTAAGTTCCCGCCACCG 60.435 66.667 0.00 0.00 0.00 4.94
357 358 3.122971 GTAAGTTCCCGCCACCGC 61.123 66.667 0.00 0.00 0.00 5.68
358 359 3.315949 TAAGTTCCCGCCACCGCT 61.316 61.111 0.00 0.00 0.00 5.52
359 360 3.599285 TAAGTTCCCGCCACCGCTG 62.599 63.158 0.00 0.00 0.00 5.18
394 395 4.371751 CGGCGCGCGTTAAAACCA 62.372 61.111 32.35 0.00 0.00 3.67
395 396 2.051166 GGCGCGCGTTAAAACCAA 60.051 55.556 32.35 0.00 0.00 3.67
396 397 1.657794 GGCGCGCGTTAAAACCAAA 60.658 52.632 32.35 0.00 0.00 3.28
397 398 1.004785 GGCGCGCGTTAAAACCAAAT 61.005 50.000 32.35 0.00 0.00 2.32
398 399 0.779408 GCGCGCGTTAAAACCAAATT 59.221 45.000 32.35 0.00 0.00 1.82
399 400 1.190543 GCGCGCGTTAAAACCAAATTT 59.809 42.857 32.35 0.00 0.00 1.82
400 401 2.404361 GCGCGCGTTAAAACCAAATTTA 59.596 40.909 32.35 0.00 0.00 1.40
401 402 3.715751 GCGCGCGTTAAAACCAAATTTAC 60.716 43.478 32.35 3.81 0.00 2.01
402 403 3.181551 CGCGCGTTAAAACCAAATTTACC 60.182 43.478 24.19 0.00 0.00 2.85
403 404 3.181551 GCGCGTTAAAACCAAATTTACCG 60.182 43.478 8.43 0.00 34.87 4.02
404 405 3.181551 CGCGTTAAAACCAAATTTACCGC 60.182 43.478 10.40 10.40 46.52 5.68
406 407 5.240057 CGTTAAAACCAAATTTACCGCAC 57.760 39.130 0.00 0.00 0.00 5.34
407 408 4.143783 CGTTAAAACCAAATTTACCGCACG 60.144 41.667 0.00 0.00 0.00 5.34
408 409 2.425578 AAACCAAATTTACCGCACGG 57.574 45.000 7.71 7.71 42.03 4.94
409 410 0.599060 AACCAAATTTACCGCACGGG 59.401 50.000 14.51 0.00 43.62 5.28
410 411 1.153920 CCAAATTTACCGCACGGGC 60.154 57.895 14.51 0.00 40.62 6.13
429 430 4.705519 CGCCTTTTGCCGCACCAG 62.706 66.667 0.00 0.00 36.24 4.00
430 431 3.605664 GCCTTTTGCCGCACCAGT 61.606 61.111 0.00 0.00 0.00 4.00
431 432 3.128375 CCTTTTGCCGCACCAGTT 58.872 55.556 0.00 0.00 0.00 3.16
432 433 1.300080 CCTTTTGCCGCACCAGTTG 60.300 57.895 0.00 0.00 0.00 3.16
433 434 1.300080 CTTTTGCCGCACCAGTTGG 60.300 57.895 0.00 0.00 42.17 3.77
434 435 1.733402 CTTTTGCCGCACCAGTTGGA 61.733 55.000 4.92 0.00 38.94 3.53
435 436 1.733402 TTTTGCCGCACCAGTTGGAG 61.733 55.000 4.92 0.00 38.94 3.86
436 437 2.616797 TTTGCCGCACCAGTTGGAGA 62.617 55.000 4.92 0.00 38.94 3.71
437 438 2.045926 GCCGCACCAGTTGGAGAT 60.046 61.111 4.92 0.00 38.94 2.75
438 439 2.401766 GCCGCACCAGTTGGAGATG 61.402 63.158 4.92 0.00 38.94 2.90
439 440 2.401766 CCGCACCAGTTGGAGATGC 61.402 63.158 4.92 3.77 38.94 3.91
440 441 1.376424 CGCACCAGTTGGAGATGCT 60.376 57.895 4.92 0.00 38.94 3.79
441 442 1.364626 CGCACCAGTTGGAGATGCTC 61.365 60.000 4.92 0.00 38.94 4.26
442 443 0.035630 GCACCAGTTGGAGATGCTCT 60.036 55.000 4.92 0.00 38.94 4.09
443 444 1.208052 GCACCAGTTGGAGATGCTCTA 59.792 52.381 4.92 0.00 38.94 2.43
444 445 2.355108 GCACCAGTTGGAGATGCTCTAA 60.355 50.000 4.92 0.00 38.94 2.10
445 446 3.529533 CACCAGTTGGAGATGCTCTAAG 58.470 50.000 4.92 0.00 38.94 2.18
446 447 2.503356 ACCAGTTGGAGATGCTCTAAGG 59.497 50.000 4.92 0.00 38.94 2.69
447 448 2.503356 CCAGTTGGAGATGCTCTAAGGT 59.497 50.000 0.00 0.00 31.92 3.50
448 449 3.054802 CCAGTTGGAGATGCTCTAAGGTT 60.055 47.826 0.00 0.00 31.92 3.50
449 450 3.937706 CAGTTGGAGATGCTCTAAGGTTG 59.062 47.826 0.00 0.00 31.92 3.77
450 451 3.840666 AGTTGGAGATGCTCTAAGGTTGA 59.159 43.478 0.00 0.00 31.92 3.18
451 452 4.081198 AGTTGGAGATGCTCTAAGGTTGAG 60.081 45.833 0.00 0.00 31.92 3.02
452 453 3.713003 TGGAGATGCTCTAAGGTTGAGA 58.287 45.455 0.00 0.00 33.68 3.27
453 454 3.449018 TGGAGATGCTCTAAGGTTGAGAC 59.551 47.826 0.00 0.00 33.68 3.36
454 455 3.704061 GGAGATGCTCTAAGGTTGAGACT 59.296 47.826 0.00 0.00 33.68 3.24
455 456 4.441356 GGAGATGCTCTAAGGTTGAGACTG 60.441 50.000 0.00 0.00 33.68 3.51
456 457 3.450457 AGATGCTCTAAGGTTGAGACTGG 59.550 47.826 0.00 0.00 33.68 4.00
457 458 2.609747 TGCTCTAAGGTTGAGACTGGT 58.390 47.619 0.00 0.00 33.68 4.00
458 459 3.774734 TGCTCTAAGGTTGAGACTGGTA 58.225 45.455 0.00 0.00 33.68 3.25
459 460 4.353777 TGCTCTAAGGTTGAGACTGGTAT 58.646 43.478 0.00 0.00 33.68 2.73
460 461 4.160439 TGCTCTAAGGTTGAGACTGGTATG 59.840 45.833 0.00 0.00 33.68 2.39
461 462 4.402793 GCTCTAAGGTTGAGACTGGTATGA 59.597 45.833 0.00 0.00 33.68 2.15
462 463 5.680151 GCTCTAAGGTTGAGACTGGTATGAC 60.680 48.000 0.00 0.00 33.68 3.06
463 464 3.594603 AAGGTTGAGACTGGTATGACG 57.405 47.619 0.00 0.00 0.00 4.35
464 465 2.803956 AGGTTGAGACTGGTATGACGA 58.196 47.619 0.00 0.00 0.00 4.20
465 466 2.492484 AGGTTGAGACTGGTATGACGAC 59.508 50.000 0.00 0.00 0.00 4.34
466 467 2.492484 GGTTGAGACTGGTATGACGACT 59.508 50.000 0.00 0.00 0.00 4.18
467 468 3.427773 GGTTGAGACTGGTATGACGACTC 60.428 52.174 0.00 0.00 0.00 3.36
468 469 3.351794 TGAGACTGGTATGACGACTCT 57.648 47.619 0.00 0.00 0.00 3.24
469 470 3.687125 TGAGACTGGTATGACGACTCTT 58.313 45.455 0.00 0.00 0.00 2.85
470 471 3.690139 TGAGACTGGTATGACGACTCTTC 59.310 47.826 0.00 0.00 0.00 2.87
471 472 3.018149 AGACTGGTATGACGACTCTTCC 58.982 50.000 0.00 0.00 0.00 3.46
472 473 2.753452 GACTGGTATGACGACTCTTCCA 59.247 50.000 0.00 0.00 0.00 3.53
473 474 2.492484 ACTGGTATGACGACTCTTCCAC 59.508 50.000 0.00 0.00 0.00 4.02
474 475 2.492088 CTGGTATGACGACTCTTCCACA 59.508 50.000 0.00 0.00 0.00 4.17
475 476 2.230508 TGGTATGACGACTCTTCCACAC 59.769 50.000 0.00 0.00 0.00 3.82
476 477 2.416972 GGTATGACGACTCTTCCACACC 60.417 54.545 0.00 0.00 0.00 4.16
477 478 1.633774 ATGACGACTCTTCCACACCT 58.366 50.000 0.00 0.00 0.00 4.00
478 479 1.410004 TGACGACTCTTCCACACCTT 58.590 50.000 0.00 0.00 0.00 3.50
479 480 1.760613 TGACGACTCTTCCACACCTTT 59.239 47.619 0.00 0.00 0.00 3.11
480 481 2.223971 TGACGACTCTTCCACACCTTTC 60.224 50.000 0.00 0.00 0.00 2.62
481 482 2.036089 GACGACTCTTCCACACCTTTCT 59.964 50.000 0.00 0.00 0.00 2.52
482 483 3.228453 ACGACTCTTCCACACCTTTCTA 58.772 45.455 0.00 0.00 0.00 2.10
483 484 3.833070 ACGACTCTTCCACACCTTTCTAT 59.167 43.478 0.00 0.00 0.00 1.98
484 485 5.014858 ACGACTCTTCCACACCTTTCTATA 58.985 41.667 0.00 0.00 0.00 1.31
485 486 5.657302 ACGACTCTTCCACACCTTTCTATAT 59.343 40.000 0.00 0.00 0.00 0.86
486 487 6.154706 ACGACTCTTCCACACCTTTCTATATT 59.845 38.462 0.00 0.00 0.00 1.28
487 488 6.697892 CGACTCTTCCACACCTTTCTATATTC 59.302 42.308 0.00 0.00 0.00 1.75
488 489 7.496346 ACTCTTCCACACCTTTCTATATTCA 57.504 36.000 0.00 0.00 0.00 2.57
489 490 7.918076 ACTCTTCCACACCTTTCTATATTCAA 58.082 34.615 0.00 0.00 0.00 2.69
490 491 7.824779 ACTCTTCCACACCTTTCTATATTCAAC 59.175 37.037 0.00 0.00 0.00 3.18
491 492 7.918076 TCTTCCACACCTTTCTATATTCAACT 58.082 34.615 0.00 0.00 0.00 3.16
492 493 7.824289 TCTTCCACACCTTTCTATATTCAACTG 59.176 37.037 0.00 0.00 0.00 3.16
493 494 6.414732 TCCACACCTTTCTATATTCAACTGG 58.585 40.000 0.00 0.00 0.00 4.00
494 495 5.590259 CCACACCTTTCTATATTCAACTGGG 59.410 44.000 0.00 0.00 0.00 4.45
495 496 6.180472 CACACCTTTCTATATTCAACTGGGT 58.820 40.000 0.00 0.00 0.00 4.51
496 497 7.335627 CACACCTTTCTATATTCAACTGGGTA 58.664 38.462 0.00 0.00 0.00 3.69
497 498 7.495934 CACACCTTTCTATATTCAACTGGGTAG 59.504 40.741 0.00 0.00 0.00 3.18
498 499 6.483640 CACCTTTCTATATTCAACTGGGTAGC 59.516 42.308 0.00 0.00 0.00 3.58
499 500 5.696724 CCTTTCTATATTCAACTGGGTAGCG 59.303 44.000 0.00 0.00 0.00 4.26
500 501 5.864418 TTCTATATTCAACTGGGTAGCGT 57.136 39.130 0.00 0.00 0.00 5.07
501 502 6.964807 TTCTATATTCAACTGGGTAGCGTA 57.035 37.500 0.00 0.00 0.00 4.42
502 503 6.570672 TCTATATTCAACTGGGTAGCGTAG 57.429 41.667 0.00 0.00 0.00 3.51
503 504 6.066690 TCTATATTCAACTGGGTAGCGTAGT 58.933 40.000 0.00 0.00 0.00 2.73
504 505 3.975168 ATTCAACTGGGTAGCGTAGTT 57.025 42.857 7.21 7.21 35.18 2.24
505 506 3.308438 TTCAACTGGGTAGCGTAGTTC 57.692 47.619 9.42 0.00 32.69 3.01
506 507 2.241160 TCAACTGGGTAGCGTAGTTCA 58.759 47.619 9.42 0.00 32.69 3.18
507 508 2.230508 TCAACTGGGTAGCGTAGTTCAG 59.769 50.000 9.42 2.07 32.69 3.02
508 509 2.211250 ACTGGGTAGCGTAGTTCAGA 57.789 50.000 0.00 0.00 0.00 3.27
509 510 2.093106 ACTGGGTAGCGTAGTTCAGAG 58.907 52.381 0.00 0.00 0.00 3.35
510 511 2.093106 CTGGGTAGCGTAGTTCAGAGT 58.907 52.381 0.00 0.00 0.00 3.24
511 512 2.492484 CTGGGTAGCGTAGTTCAGAGTT 59.508 50.000 0.00 0.00 0.00 3.01
512 513 2.895404 TGGGTAGCGTAGTTCAGAGTTT 59.105 45.455 0.00 0.00 0.00 2.66
513 514 3.251571 GGGTAGCGTAGTTCAGAGTTTG 58.748 50.000 0.00 0.00 0.00 2.93
514 515 3.251571 GGTAGCGTAGTTCAGAGTTTGG 58.748 50.000 0.00 0.00 0.00 3.28
515 516 3.057033 GGTAGCGTAGTTCAGAGTTTGGA 60.057 47.826 0.00 0.00 0.00 3.53
516 517 3.027974 AGCGTAGTTCAGAGTTTGGAC 57.972 47.619 0.00 0.00 35.32 4.02
517 518 2.364324 AGCGTAGTTCAGAGTTTGGACA 59.636 45.455 0.00 0.00 37.80 4.02
518 519 3.006967 AGCGTAGTTCAGAGTTTGGACAT 59.993 43.478 0.00 0.00 37.80 3.06
550 551 9.487790 CAAGGCCAGACAAGAAAAATAAATTTA 57.512 29.630 5.01 0.00 0.00 1.40
579 580 3.968649 CAATAAATTGTGGAGCCCGATG 58.031 45.455 0.00 0.00 33.22 3.84
580 581 2.051334 TAAATTGTGGAGCCCGATGG 57.949 50.000 0.00 0.00 0.00 3.51
599 607 6.444633 CGATGGAGTAGTATATTGGTTCGTT 58.555 40.000 0.00 0.00 0.00 3.85
609 617 8.699283 AGTATATTGGTTCGTTCTACTTTCAC 57.301 34.615 0.00 0.00 0.00 3.18
666 674 6.071463 GTCAAGTTACAATAGCACAAGAACG 58.929 40.000 0.00 0.00 0.00 3.95
672 680 7.855904 AGTTACAATAGCACAAGAACGAAAAAG 59.144 33.333 0.00 0.00 0.00 2.27
698 706 4.913335 AATAGGCAATCAGCTTCACATG 57.087 40.909 0.00 0.00 44.79 3.21
729 737 3.381272 ACCAAACCAGTCAACACAATCTG 59.619 43.478 0.00 0.00 0.00 2.90
766 774 2.292569 CAGGAAGAAATCGCCATGGATG 59.707 50.000 18.40 7.05 0.00 3.51
796 804 2.433318 GGTCACTGACAGCGCCTC 60.433 66.667 2.29 0.00 33.68 4.70
798 806 3.295273 TCACTGACAGCGCCTCGT 61.295 61.111 2.29 0.00 0.00 4.18
800 808 2.356313 ACTGACAGCGCCTCGTTG 60.356 61.111 2.29 0.00 43.29 4.10
801 809 2.049156 CTGACAGCGCCTCGTTGA 60.049 61.111 2.29 0.00 40.32 3.18
802 810 1.446792 CTGACAGCGCCTCGTTGAT 60.447 57.895 2.29 0.00 40.32 2.57
804 812 0.245266 TGACAGCGCCTCGTTGATTA 59.755 50.000 2.29 0.00 40.32 1.75
902 910 3.728474 GCCATGGCGATCAGTCAG 58.272 61.111 23.48 0.00 38.18 3.51
928 937 1.869132 GACTGTTTTGTACCGTCCACC 59.131 52.381 0.00 0.00 35.61 4.61
1044 1093 1.372087 CCAAGAGCAATGACGGAGGC 61.372 60.000 0.00 0.00 0.00 4.70
1134 1183 1.950007 CTACGACATCGGGATCGCT 59.050 57.895 8.28 0.00 44.95 4.93
1164 1213 0.462759 CTTCCATGGAGCCGTTCCTC 60.463 60.000 15.53 0.00 46.92 3.71
1299 1351 1.002868 CCTGCTCACCACCTTCCTG 60.003 63.158 0.00 0.00 0.00 3.86
1774 1915 3.046087 TCGACCGCGAACTCGACT 61.046 61.111 8.23 0.00 44.78 4.18
2028 2169 2.363147 GCGTCCACCCTCCTCTCT 60.363 66.667 0.00 0.00 0.00 3.10
2046 2187 0.029035 CTATGTTCCTCGTCGACCGG 59.971 60.000 10.58 11.02 37.11 5.28
2049 2190 1.006922 GTTCCTCGTCGACCGGTTT 60.007 57.895 9.42 0.00 37.11 3.27
2106 2247 4.836688 CTCGCGTCGCAGCTGCTA 62.837 66.667 34.22 23.18 39.32 3.49
2563 2713 4.770010 TCTGAAGGAGAGAAGGAGAGAAAC 59.230 45.833 0.00 0.00 0.00 2.78
2566 2716 4.396357 AGGAGAGAAGGAGAGAAACAGA 57.604 45.455 0.00 0.00 0.00 3.41
2567 2717 4.344104 AGGAGAGAAGGAGAGAAACAGAG 58.656 47.826 0.00 0.00 0.00 3.35
2570 2720 3.756434 AGAGAAGGAGAGAAACAGAGTCG 59.244 47.826 0.00 0.00 0.00 4.18
2571 2721 3.754323 GAGAAGGAGAGAAACAGAGTCGA 59.246 47.826 0.00 0.00 0.00 4.20
2572 2722 4.340617 AGAAGGAGAGAAACAGAGTCGAT 58.659 43.478 0.00 0.00 0.00 3.59
2573 2723 4.398044 AGAAGGAGAGAAACAGAGTCGATC 59.602 45.833 0.00 0.00 0.00 3.69
2574 2724 3.691575 AGGAGAGAAACAGAGTCGATCA 58.308 45.455 0.00 0.00 0.00 2.92
2576 2726 5.441500 AGGAGAGAAACAGAGTCGATCATA 58.558 41.667 0.00 0.00 0.00 2.15
2577 2727 5.530915 AGGAGAGAAACAGAGTCGATCATAG 59.469 44.000 0.00 0.00 0.00 2.23
2578 2728 5.298276 GGAGAGAAACAGAGTCGATCATAGT 59.702 44.000 0.00 0.00 0.00 2.12
2593 2763 6.263168 TCGATCATAGTGCAGTTTCAGAGATA 59.737 38.462 0.00 0.00 0.00 1.98
2607 2777 9.788889 AGTTTCAGAGATATAAATCATCATGCA 57.211 29.630 0.00 0.00 34.28 3.96
2619 2789 2.809696 TCATCATGCACACAACAGACAG 59.190 45.455 0.00 0.00 0.00 3.51
2683 2853 3.673902 TCAGAGATCGCACAAAATGGAA 58.326 40.909 0.00 0.00 0.00 3.53
2703 2873 8.674263 ATGGAAGATGAAAGATTGTAGATCAC 57.326 34.615 0.00 0.00 0.00 3.06
2728 2898 3.770263 TGCAGTGCTCTTCATTATTGC 57.230 42.857 17.60 0.00 0.00 3.56
2732 2902 3.867493 CAGTGCTCTTCATTATTGCTCGA 59.133 43.478 0.00 0.00 0.00 4.04
2733 2903 4.510711 CAGTGCTCTTCATTATTGCTCGAT 59.489 41.667 0.00 0.00 0.00 3.59
2735 2905 5.694006 AGTGCTCTTCATTATTGCTCGATAC 59.306 40.000 0.00 0.00 0.00 2.24
2770 2940 1.644786 AATGCTTACCCTGAACGCGC 61.645 55.000 5.73 0.00 0.00 6.86
2790 2960 4.442706 CGCAGTCATTGTAGATTACCCTT 58.557 43.478 0.00 0.00 0.00 3.95
2791 2961 4.876107 CGCAGTCATTGTAGATTACCCTTT 59.124 41.667 0.00 0.00 0.00 3.11
2799 2969 5.173774 TGTAGATTACCCTTTACGCGTAG 57.826 43.478 19.61 10.70 0.00 3.51
2802 2972 2.542766 TTACCCTTTACGCGTAGTCG 57.457 50.000 19.61 11.23 40.37 4.18
2829 2999 0.891904 GAAGGGTTGGGCGCACTTTA 60.892 55.000 12.74 0.00 0.00 1.85
2889 3060 9.462606 AGATTACTCACCTTGTTTAAAATAGGG 57.537 33.333 16.93 9.86 31.91 3.53
2890 3061 9.239551 GATTACTCACCTTGTTTAAAATAGGGT 57.760 33.333 16.93 10.37 32.14 4.34
3045 3238 6.942532 TGTGGATGTCTATATTTTTGCTCC 57.057 37.500 0.00 0.00 0.00 4.70
3143 3339 1.564483 TTAGTTTGGTAGGGGCGGGG 61.564 60.000 0.00 0.00 0.00 5.73
3144 3340 2.769145 TAGTTTGGTAGGGGCGGGGT 62.769 60.000 0.00 0.00 0.00 4.95
3145 3341 3.653078 TTTGGTAGGGGCGGGGTG 61.653 66.667 0.00 0.00 0.00 4.61
3148 3344 4.802505 GGTAGGGGCGGGGTGGTA 62.803 72.222 0.00 0.00 0.00 3.25
3149 3345 3.473647 GTAGGGGCGGGGTGGTAC 61.474 72.222 0.00 0.00 0.00 3.34
3193 3394 1.080569 GCGGTGATTTTGTGGCCTG 60.081 57.895 3.32 0.00 0.00 4.85
3201 3402 0.180642 TTTTGTGGCCTGTCGTGGTA 59.819 50.000 3.32 0.00 0.00 3.25
3219 3420 7.439955 GTCGTGGTATGATTATGTGTTATCCAA 59.560 37.037 0.00 0.00 0.00 3.53
3331 3538 1.995626 CTAGGTGGTGGGAGGGTGG 60.996 68.421 0.00 0.00 0.00 4.61
3341 3548 1.683441 GGAGGGTGGACGGAATTGT 59.317 57.895 0.00 0.00 0.00 2.71
3347 3554 2.422127 GGGTGGACGGAATTGTTATGTG 59.578 50.000 0.00 0.00 0.00 3.21
3351 3558 5.508320 GGTGGACGGAATTGTTATGTGTTTT 60.508 40.000 0.00 0.00 0.00 2.43
3352 3559 6.294065 GGTGGACGGAATTGTTATGTGTTTTA 60.294 38.462 0.00 0.00 0.00 1.52
3353 3560 7.309920 GTGGACGGAATTGTTATGTGTTTTAT 58.690 34.615 0.00 0.00 0.00 1.40
3354 3561 8.452534 GTGGACGGAATTGTTATGTGTTTTATA 58.547 33.333 0.00 0.00 0.00 0.98
3355 3562 9.179909 TGGACGGAATTGTTATGTGTTTTATAT 57.820 29.630 0.00 0.00 0.00 0.86
3357 3564 9.365311 GACGGAATTGTTATGTGTTTTATATCG 57.635 33.333 0.00 0.00 0.00 2.92
3448 3657 6.966534 ATACCTCAATTATGAAAGGGCTTG 57.033 37.500 0.00 0.00 34.49 4.01
3501 3711 3.512219 AAAAATTAGGTGACCCGGTCA 57.488 42.857 16.73 16.73 40.50 4.02
3502 3712 3.512219 AAAATTAGGTGACCCGGTCAA 57.488 42.857 22.12 6.99 44.49 3.18
3503 3713 3.512219 AAATTAGGTGACCCGGTCAAA 57.488 42.857 22.12 13.21 44.49 2.69
3504 3714 3.512219 AATTAGGTGACCCGGTCAAAA 57.488 42.857 22.12 15.93 44.49 2.44
3505 3715 3.732048 ATTAGGTGACCCGGTCAAAAT 57.268 42.857 22.12 17.31 44.49 1.82
3506 3716 2.773993 TAGGTGACCCGGTCAAAATC 57.226 50.000 22.12 9.43 44.49 2.17
3507 3717 0.768622 AGGTGACCCGGTCAAAATCA 59.231 50.000 22.12 0.00 44.49 2.57
3508 3718 1.165270 GGTGACCCGGTCAAAATCAG 58.835 55.000 22.12 0.00 44.49 2.90
3509 3719 1.165270 GTGACCCGGTCAAAATCAGG 58.835 55.000 22.12 0.00 44.49 3.86
3510 3720 0.608035 TGACCCGGTCAAAATCAGGC 60.608 55.000 18.34 0.00 39.78 4.85
3511 3721 1.644786 GACCCGGTCAAAATCAGGCG 61.645 60.000 13.05 0.00 32.09 5.52
3512 3722 1.376683 CCCGGTCAAAATCAGGCGA 60.377 57.895 0.00 0.00 0.00 5.54
3513 3723 1.644786 CCCGGTCAAAATCAGGCGAC 61.645 60.000 0.00 0.00 0.00 5.19
3514 3724 1.644786 CCGGTCAAAATCAGGCGACC 61.645 60.000 0.00 0.00 43.73 4.79
3515 3725 1.644786 CGGTCAAAATCAGGCGACCC 61.645 60.000 0.00 0.00 44.20 4.46
3516 3726 0.608035 GGTCAAAATCAGGCGACCCA 60.608 55.000 0.00 0.00 41.77 4.51
3517 3727 0.804989 GTCAAAATCAGGCGACCCAG 59.195 55.000 0.00 0.00 0.00 4.45
3518 3728 0.400213 TCAAAATCAGGCGACCCAGT 59.600 50.000 0.00 0.00 0.00 4.00
3519 3729 1.202879 TCAAAATCAGGCGACCCAGTT 60.203 47.619 0.00 0.00 0.00 3.16
3520 3730 1.613437 CAAAATCAGGCGACCCAGTTT 59.387 47.619 0.00 0.00 0.00 2.66
3521 3731 1.995376 AAATCAGGCGACCCAGTTTT 58.005 45.000 0.00 0.00 0.00 2.43
3522 3732 2.871096 AATCAGGCGACCCAGTTTTA 57.129 45.000 0.00 0.00 0.00 1.52
3523 3733 2.871096 ATCAGGCGACCCAGTTTTAA 57.129 45.000 0.00 0.00 0.00 1.52
3524 3734 2.642154 TCAGGCGACCCAGTTTTAAA 57.358 45.000 0.00 0.00 0.00 1.52
3525 3735 3.149005 TCAGGCGACCCAGTTTTAAAT 57.851 42.857 0.00 0.00 0.00 1.40
3526 3736 3.492337 TCAGGCGACCCAGTTTTAAATT 58.508 40.909 0.00 0.00 0.00 1.82
3527 3737 4.653868 TCAGGCGACCCAGTTTTAAATTA 58.346 39.130 0.00 0.00 0.00 1.40
3528 3738 5.071370 TCAGGCGACCCAGTTTTAAATTAA 58.929 37.500 0.00 0.00 0.00 1.40
3529 3739 5.048573 TCAGGCGACCCAGTTTTAAATTAAC 60.049 40.000 0.00 0.00 0.00 2.01
3530 3740 4.828387 AGGCGACCCAGTTTTAAATTAACA 59.172 37.500 0.00 0.00 0.00 2.41
3531 3741 5.302313 AGGCGACCCAGTTTTAAATTAACAA 59.698 36.000 0.00 0.00 0.00 2.83
3532 3742 5.403166 GGCGACCCAGTTTTAAATTAACAAC 59.597 40.000 0.00 0.00 0.00 3.32
3533 3743 5.403166 GCGACCCAGTTTTAAATTAACAACC 59.597 40.000 0.00 0.00 0.00 3.77
3534 3744 6.736519 GCGACCCAGTTTTAAATTAACAACCT 60.737 38.462 0.00 0.00 0.00 3.50
3535 3745 6.859508 CGACCCAGTTTTAAATTAACAACCTC 59.140 38.462 0.00 0.00 0.00 3.85
3536 3746 7.468906 CGACCCAGTTTTAAATTAACAACCTCA 60.469 37.037 0.00 0.00 0.00 3.86
3537 3747 8.080363 ACCCAGTTTTAAATTAACAACCTCAA 57.920 30.769 0.00 0.00 0.00 3.02
3538 3748 8.710239 ACCCAGTTTTAAATTAACAACCTCAAT 58.290 29.630 0.00 0.00 0.00 2.57
3539 3749 9.554395 CCCAGTTTTAAATTAACAACCTCAATT 57.446 29.630 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.301027 GATAGGCCCCGGTCGCAG 62.301 72.222 12.37 0.00 0.00 5.18
4 5 3.158648 TTGGATAGGCCCCGGTCG 61.159 66.667 0.00 0.00 34.97 4.79
5 6 2.829592 CTTGGATAGGCCCCGGTC 59.170 66.667 0.00 0.00 34.97 4.79
6 7 3.489513 GCTTGGATAGGCCCCGGT 61.490 66.667 0.00 0.00 34.97 5.28
7 8 4.626081 CGCTTGGATAGGCCCCGG 62.626 72.222 0.00 0.00 34.97 5.73
9 10 4.956932 GGCGCTTGGATAGGCCCC 62.957 72.222 7.64 0.00 35.40 5.80
10 11 4.189580 TGGCGCTTGGATAGGCCC 62.190 66.667 7.64 0.00 38.64 5.80
11 12 2.902343 GTGGCGCTTGGATAGGCC 60.902 66.667 7.64 0.00 39.38 5.19
12 13 3.272334 CGTGGCGCTTGGATAGGC 61.272 66.667 7.64 0.00 0.00 3.93
52 53 4.849329 CCGGAGTGCGTACGAGGC 62.849 72.222 21.65 7.75 0.00 4.70
53 54 2.693762 TTCCGGAGTGCGTACGAGG 61.694 63.158 21.65 11.21 0.00 4.63
54 55 1.513586 GTTCCGGAGTGCGTACGAG 60.514 63.158 21.65 2.02 0.00 4.18
55 56 2.562912 GTTCCGGAGTGCGTACGA 59.437 61.111 21.65 0.80 0.00 3.43
56 57 2.872925 CGTTCCGGAGTGCGTACG 60.873 66.667 11.84 11.84 0.00 3.67
57 58 1.799121 GTCGTTCCGGAGTGCGTAC 60.799 63.158 19.47 14.14 0.00 3.67
58 59 2.562912 GTCGTTCCGGAGTGCGTA 59.437 61.111 19.47 8.34 0.00 4.42
59 60 4.353437 GGTCGTTCCGGAGTGCGT 62.353 66.667 19.47 0.00 0.00 5.24
103 104 1.008767 GGTACTTCGCCGAGATCCG 60.009 63.158 0.00 0.00 38.18 4.18
104 105 0.030908 CTGGTACTTCGCCGAGATCC 59.969 60.000 0.00 0.00 0.00 3.36
105 106 0.595310 GCTGGTACTTCGCCGAGATC 60.595 60.000 0.00 0.00 0.00 2.75
106 107 1.437986 GCTGGTACTTCGCCGAGAT 59.562 57.895 0.00 0.00 0.00 2.75
107 108 2.707849 GGCTGGTACTTCGCCGAGA 61.708 63.158 5.18 0.00 33.64 4.04
108 109 2.202756 GGCTGGTACTTCGCCGAG 60.203 66.667 5.18 0.00 33.64 4.63
111 112 2.047560 AACGGCTGGTACTTCGCC 60.048 61.111 0.00 9.58 40.40 5.54
112 113 2.388232 CCAACGGCTGGTACTTCGC 61.388 63.158 0.00 0.00 40.78 4.70
113 114 1.740296 CCCAACGGCTGGTACTTCG 60.740 63.158 0.00 0.00 44.76 3.79
114 115 1.376812 CCCCAACGGCTGGTACTTC 60.377 63.158 0.00 0.00 44.76 3.01
115 116 2.754375 CCCCAACGGCTGGTACTT 59.246 61.111 0.00 0.00 44.76 2.24
144 145 3.659089 TTCTTCAGGCTACCGCGGC 62.659 63.158 28.58 11.81 36.88 6.53
145 146 1.810030 GTTCTTCAGGCTACCGCGG 60.810 63.158 26.86 26.86 36.88 6.46
146 147 1.810030 GGTTCTTCAGGCTACCGCG 60.810 63.158 0.00 0.00 36.88 6.46
147 148 1.019805 GTGGTTCTTCAGGCTACCGC 61.020 60.000 1.48 1.48 34.42 5.68
148 149 0.736325 CGTGGTTCTTCAGGCTACCG 60.736 60.000 0.00 0.00 33.29 4.02
149 150 0.391263 CCGTGGTTCTTCAGGCTACC 60.391 60.000 0.00 0.00 0.00 3.18
150 151 1.019805 GCCGTGGTTCTTCAGGCTAC 61.020 60.000 0.00 0.00 44.06 3.58
151 152 1.295423 GCCGTGGTTCTTCAGGCTA 59.705 57.895 0.00 0.00 44.06 3.93
152 153 2.032681 GCCGTGGTTCTTCAGGCT 59.967 61.111 0.00 0.00 44.06 4.58
153 154 3.423154 CGCCGTGGTTCTTCAGGC 61.423 66.667 0.00 0.00 44.00 4.85
154 155 2.742372 CCGCCGTGGTTCTTCAGG 60.742 66.667 0.00 0.00 0.00 3.86
155 156 3.423154 GCCGCCGTGGTTCTTCAG 61.423 66.667 0.00 0.00 41.21 3.02
218 219 4.821589 CTCCCCTCGCAACCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
219 220 4.148825 CCTCCCCTCGCAACCTCG 62.149 72.222 0.00 0.00 0.00 4.63
220 221 3.787001 CCCTCCCCTCGCAACCTC 61.787 72.222 0.00 0.00 0.00 3.85
233 234 4.436998 ACACAGCTACGCGCCCTC 62.437 66.667 5.73 0.00 40.39 4.30
234 235 4.436998 GACACAGCTACGCGCCCT 62.437 66.667 5.73 0.00 40.39 5.19
235 236 4.436998 AGACACAGCTACGCGCCC 62.437 66.667 5.73 0.00 40.39 6.13
236 237 3.181967 CAGACACAGCTACGCGCC 61.182 66.667 5.73 0.00 40.39 6.53
237 238 2.430921 ACAGACACAGCTACGCGC 60.431 61.111 5.73 0.00 39.57 6.86
238 239 2.720758 GCACAGACACAGCTACGCG 61.721 63.158 3.53 3.53 0.00 6.01
239 240 2.720758 CGCACAGACACAGCTACGC 61.721 63.158 0.00 0.00 0.00 4.42
240 241 2.720758 GCGCACAGACACAGCTACG 61.721 63.158 0.30 0.00 0.00 3.51
241 242 2.720758 CGCGCACAGACACAGCTAC 61.721 63.158 8.75 0.00 0.00 3.58
242 243 2.430751 CGCGCACAGACACAGCTA 60.431 61.111 8.75 0.00 0.00 3.32
243 244 4.592192 ACGCGCACAGACACAGCT 62.592 61.111 5.73 0.00 0.00 4.24
244 245 4.360027 CACGCGCACAGACACAGC 62.360 66.667 5.73 0.00 0.00 4.40
245 246 3.705638 CCACGCGCACAGACACAG 61.706 66.667 5.73 0.00 0.00 3.66
259 260 1.422950 TAAAATACCGCGCTCGCCAC 61.423 55.000 5.56 0.00 37.98 5.01
260 261 0.531090 ATAAAATACCGCGCTCGCCA 60.531 50.000 5.56 0.00 37.98 5.69
261 262 1.389106 CTATAAAATACCGCGCTCGCC 59.611 52.381 5.56 0.00 37.98 5.54
262 263 1.389106 CCTATAAAATACCGCGCTCGC 59.611 52.381 5.56 3.90 37.85 5.03
263 264 1.389106 GCCTATAAAATACCGCGCTCG 59.611 52.381 5.56 0.00 0.00 5.03
264 265 1.389106 CGCCTATAAAATACCGCGCTC 59.611 52.381 5.56 0.00 32.57 5.03
265 266 1.425412 CGCCTATAAAATACCGCGCT 58.575 50.000 5.56 0.00 32.57 5.92
266 267 3.941194 CGCCTATAAAATACCGCGC 57.059 52.632 0.00 0.00 32.57 6.86
267 268 3.941194 GCGCCTATAAAATACCGCG 57.059 52.632 0.00 0.00 42.33 6.46
268 269 0.179233 GCGCGCCTATAAAATACCGC 60.179 55.000 23.24 0.00 38.23 5.68
269 270 0.441145 GGCGCGCCTATAAAATACCG 59.559 55.000 41.71 0.00 0.00 4.02
270 271 0.441145 CGGCGCGCCTATAAAATACC 59.559 55.000 43.60 16.56 0.00 2.73
271 272 1.421382 TCGGCGCGCCTATAAAATAC 58.579 50.000 43.60 17.10 0.00 1.89
272 273 2.063266 CTTCGGCGCGCCTATAAAATA 58.937 47.619 43.60 19.13 0.00 1.40
273 274 0.865769 CTTCGGCGCGCCTATAAAAT 59.134 50.000 43.60 0.00 0.00 1.82
274 275 1.768112 GCTTCGGCGCGCCTATAAAA 61.768 55.000 43.60 27.40 0.00 1.52
275 276 2.241880 GCTTCGGCGCGCCTATAAA 61.242 57.895 43.60 29.64 0.00 1.40
276 277 2.660552 GCTTCGGCGCGCCTATAA 60.661 61.111 43.60 31.95 0.00 0.98
288 289 4.101790 ATTTGGCACGCCGCTTCG 62.102 61.111 3.13 0.00 41.91 3.79
289 290 1.366111 TAGATTTGGCACGCCGCTTC 61.366 55.000 3.13 0.00 41.91 3.86
290 291 1.376683 TAGATTTGGCACGCCGCTT 60.377 52.632 3.13 0.00 41.91 4.68
291 292 2.106683 GTAGATTTGGCACGCCGCT 61.107 57.895 3.13 1.07 41.91 5.52
292 293 2.403586 GTAGATTTGGCACGCCGC 59.596 61.111 3.13 0.00 39.42 6.53
293 294 2.808958 CGGTAGATTTGGCACGCCG 61.809 63.158 3.13 0.00 39.42 6.46
294 295 3.098555 CGGTAGATTTGGCACGCC 58.901 61.111 0.00 0.00 0.00 5.68
295 296 2.403586 GCGGTAGATTTGGCACGC 59.596 61.111 0.69 0.69 40.19 5.34
296 297 2.701006 CGCGGTAGATTTGGCACG 59.299 61.111 0.00 0.00 0.00 5.34
297 298 2.403586 GCGCGGTAGATTTGGCAC 59.596 61.111 8.83 0.00 0.00 5.01
298 299 2.822255 GGCGCGGTAGATTTGGCA 60.822 61.111 8.83 0.00 0.00 4.92
299 300 3.937062 CGGCGCGGTAGATTTGGC 61.937 66.667 8.83 0.00 0.00 4.52
300 301 3.937062 GCGGCGCGGTAGATTTGG 61.937 66.667 19.09 0.00 0.00 3.28
339 340 2.435410 CGGTGGCGGGAACTTACC 60.435 66.667 0.00 0.00 0.00 2.85
340 341 3.122971 GCGGTGGCGGGAACTTAC 61.123 66.667 0.00 0.00 0.00 2.34
341 342 3.315949 AGCGGTGGCGGGAACTTA 61.316 61.111 0.00 0.00 46.35 2.24
377 378 3.858632 TTGGTTTTAACGCGCGCCG 62.859 57.895 32.58 22.51 44.21 6.46
378 379 1.004785 ATTTGGTTTTAACGCGCGCC 61.005 50.000 32.58 22.12 0.00 6.53
379 380 0.779408 AATTTGGTTTTAACGCGCGC 59.221 45.000 32.58 23.91 0.00 6.86
380 381 3.181551 GGTAAATTTGGTTTTAACGCGCG 60.182 43.478 30.96 30.96 0.00 6.86
381 382 3.181551 CGGTAAATTTGGTTTTAACGCGC 60.182 43.478 5.73 0.00 43.00 6.86
382 383 4.534095 CGGTAAATTTGGTTTTAACGCG 57.466 40.909 3.53 3.53 43.00 6.01
385 386 4.148522 CCGTGCGGTAAATTTGGTTTTAAC 59.851 41.667 0.00 0.00 0.00 2.01
386 387 4.296690 CCGTGCGGTAAATTTGGTTTTAA 58.703 39.130 0.00 0.00 0.00 1.52
387 388 3.305199 CCCGTGCGGTAAATTTGGTTTTA 60.305 43.478 9.90 0.00 0.00 1.52
388 389 2.546162 CCCGTGCGGTAAATTTGGTTTT 60.546 45.455 9.90 0.00 0.00 2.43
389 390 1.000052 CCCGTGCGGTAAATTTGGTTT 60.000 47.619 9.90 0.00 0.00 3.27
390 391 0.599060 CCCGTGCGGTAAATTTGGTT 59.401 50.000 9.90 0.00 0.00 3.67
391 392 1.868987 GCCCGTGCGGTAAATTTGGT 61.869 55.000 9.90 0.00 0.00 3.67
392 393 1.153920 GCCCGTGCGGTAAATTTGG 60.154 57.895 9.90 0.00 0.00 3.28
393 394 4.469052 GCCCGTGCGGTAAATTTG 57.531 55.556 9.90 0.00 0.00 2.32
412 413 4.705519 CTGGTGCGGCAAAAGGCG 62.706 66.667 3.23 7.09 46.16 5.52
413 414 3.150647 AACTGGTGCGGCAAAAGGC 62.151 57.895 3.23 0.00 43.74 4.35
414 415 1.300080 CAACTGGTGCGGCAAAAGG 60.300 57.895 3.23 0.00 0.00 3.11
415 416 1.300080 CCAACTGGTGCGGCAAAAG 60.300 57.895 3.23 7.98 0.00 2.27
416 417 1.733402 CTCCAACTGGTGCGGCAAAA 61.733 55.000 3.23 0.00 36.34 2.44
417 418 2.124109 TCCAACTGGTGCGGCAAA 60.124 55.556 3.23 0.00 36.34 3.68
418 419 2.410322 ATCTCCAACTGGTGCGGCAA 62.410 55.000 3.23 0.00 36.34 4.52
419 420 2.894257 ATCTCCAACTGGTGCGGCA 61.894 57.895 0.00 0.00 36.34 5.69
420 421 2.045926 ATCTCCAACTGGTGCGGC 60.046 61.111 0.00 0.00 36.34 6.53
421 422 2.401766 GCATCTCCAACTGGTGCGG 61.402 63.158 0.00 0.00 36.34 5.69
422 423 1.364626 GAGCATCTCCAACTGGTGCG 61.365 60.000 4.66 0.00 39.05 5.34
423 424 2.475666 GAGCATCTCCAACTGGTGC 58.524 57.895 2.40 2.40 35.62 5.01
435 436 3.196685 ACCAGTCTCAACCTTAGAGCATC 59.803 47.826 0.00 0.00 33.15 3.91
436 437 3.177228 ACCAGTCTCAACCTTAGAGCAT 58.823 45.455 0.00 0.00 33.15 3.79
437 438 2.609747 ACCAGTCTCAACCTTAGAGCA 58.390 47.619 0.00 0.00 33.15 4.26
438 439 4.402793 TCATACCAGTCTCAACCTTAGAGC 59.597 45.833 0.00 0.00 33.15 4.09
439 440 5.449314 CGTCATACCAGTCTCAACCTTAGAG 60.449 48.000 0.00 0.00 34.42 2.43
440 441 4.398358 CGTCATACCAGTCTCAACCTTAGA 59.602 45.833 0.00 0.00 0.00 2.10
441 442 4.398358 TCGTCATACCAGTCTCAACCTTAG 59.602 45.833 0.00 0.00 0.00 2.18
442 443 4.157289 GTCGTCATACCAGTCTCAACCTTA 59.843 45.833 0.00 0.00 0.00 2.69
443 444 3.056749 GTCGTCATACCAGTCTCAACCTT 60.057 47.826 0.00 0.00 0.00 3.50
444 445 2.492484 GTCGTCATACCAGTCTCAACCT 59.508 50.000 0.00 0.00 0.00 3.50
445 446 2.492484 AGTCGTCATACCAGTCTCAACC 59.508 50.000 0.00 0.00 0.00 3.77
446 447 3.440872 AGAGTCGTCATACCAGTCTCAAC 59.559 47.826 0.00 0.00 0.00 3.18
447 448 3.687125 AGAGTCGTCATACCAGTCTCAA 58.313 45.455 0.00 0.00 0.00 3.02
448 449 3.351794 AGAGTCGTCATACCAGTCTCA 57.648 47.619 0.00 0.00 0.00 3.27
449 450 3.065648 GGAAGAGTCGTCATACCAGTCTC 59.934 52.174 8.37 0.00 0.00 3.36
450 451 3.018149 GGAAGAGTCGTCATACCAGTCT 58.982 50.000 8.37 0.00 0.00 3.24
451 452 2.753452 TGGAAGAGTCGTCATACCAGTC 59.247 50.000 8.37 0.00 0.00 3.51
452 453 2.492484 GTGGAAGAGTCGTCATACCAGT 59.508 50.000 8.37 0.00 0.00 4.00
453 454 2.492088 TGTGGAAGAGTCGTCATACCAG 59.508 50.000 8.37 0.00 0.00 4.00
454 455 2.230508 GTGTGGAAGAGTCGTCATACCA 59.769 50.000 8.37 0.00 0.00 3.25
455 456 2.416972 GGTGTGGAAGAGTCGTCATACC 60.417 54.545 8.37 10.09 35.04 2.73
456 457 2.492484 AGGTGTGGAAGAGTCGTCATAC 59.508 50.000 8.37 7.00 0.00 2.39
457 458 2.803956 AGGTGTGGAAGAGTCGTCATA 58.196 47.619 8.37 0.00 0.00 2.15
458 459 1.633774 AGGTGTGGAAGAGTCGTCAT 58.366 50.000 8.37 0.00 0.00 3.06
459 460 1.410004 AAGGTGTGGAAGAGTCGTCA 58.590 50.000 8.37 0.00 0.00 4.35
460 461 2.036089 AGAAAGGTGTGGAAGAGTCGTC 59.964 50.000 0.00 0.00 0.00 4.20
461 462 2.040178 AGAAAGGTGTGGAAGAGTCGT 58.960 47.619 0.00 0.00 0.00 4.34
462 463 2.821991 AGAAAGGTGTGGAAGAGTCG 57.178 50.000 0.00 0.00 0.00 4.18
463 464 7.556844 TGAATATAGAAAGGTGTGGAAGAGTC 58.443 38.462 0.00 0.00 0.00 3.36
464 465 7.496346 TGAATATAGAAAGGTGTGGAAGAGT 57.504 36.000 0.00 0.00 0.00 3.24
465 466 8.043710 AGTTGAATATAGAAAGGTGTGGAAGAG 58.956 37.037 0.00 0.00 0.00 2.85
466 467 7.824289 CAGTTGAATATAGAAAGGTGTGGAAGA 59.176 37.037 0.00 0.00 0.00 2.87
467 468 7.066284 CCAGTTGAATATAGAAAGGTGTGGAAG 59.934 40.741 0.00 0.00 0.00 3.46
468 469 6.884295 CCAGTTGAATATAGAAAGGTGTGGAA 59.116 38.462 0.00 0.00 0.00 3.53
469 470 6.414732 CCAGTTGAATATAGAAAGGTGTGGA 58.585 40.000 0.00 0.00 0.00 4.02
470 471 5.590259 CCCAGTTGAATATAGAAAGGTGTGG 59.410 44.000 0.00 0.00 0.00 4.17
471 472 6.180472 ACCCAGTTGAATATAGAAAGGTGTG 58.820 40.000 0.00 0.00 0.00 3.82
472 473 6.388619 ACCCAGTTGAATATAGAAAGGTGT 57.611 37.500 0.00 0.00 0.00 4.16
473 474 6.483640 GCTACCCAGTTGAATATAGAAAGGTG 59.516 42.308 0.00 0.00 0.00 4.00
474 475 6.592870 GCTACCCAGTTGAATATAGAAAGGT 58.407 40.000 0.00 0.00 0.00 3.50
475 476 5.696724 CGCTACCCAGTTGAATATAGAAAGG 59.303 44.000 0.00 0.00 0.00 3.11
476 477 6.281405 ACGCTACCCAGTTGAATATAGAAAG 58.719 40.000 0.00 0.00 0.00 2.62
477 478 6.229936 ACGCTACCCAGTTGAATATAGAAA 57.770 37.500 0.00 0.00 0.00 2.52
478 479 5.864418 ACGCTACCCAGTTGAATATAGAA 57.136 39.130 0.00 0.00 0.00 2.10
479 480 6.066690 ACTACGCTACCCAGTTGAATATAGA 58.933 40.000 0.00 0.00 0.00 1.98
480 481 6.328641 ACTACGCTACCCAGTTGAATATAG 57.671 41.667 0.00 0.00 0.00 1.31
481 482 6.321945 TGAACTACGCTACCCAGTTGAATATA 59.678 38.462 0.00 0.00 32.79 0.86
482 483 5.128171 TGAACTACGCTACCCAGTTGAATAT 59.872 40.000 0.00 0.00 32.79 1.28
483 484 4.463539 TGAACTACGCTACCCAGTTGAATA 59.536 41.667 0.00 0.00 32.79 1.75
484 485 3.259876 TGAACTACGCTACCCAGTTGAAT 59.740 43.478 0.00 0.00 32.79 2.57
485 486 2.629137 TGAACTACGCTACCCAGTTGAA 59.371 45.455 0.00 0.00 32.79 2.69
486 487 2.230508 CTGAACTACGCTACCCAGTTGA 59.769 50.000 0.00 0.00 32.79 3.18
487 488 2.230508 TCTGAACTACGCTACCCAGTTG 59.769 50.000 0.00 0.00 32.79 3.16
488 489 2.492484 CTCTGAACTACGCTACCCAGTT 59.508 50.000 0.00 0.00 35.27 3.16
489 490 2.093106 CTCTGAACTACGCTACCCAGT 58.907 52.381 0.00 0.00 0.00 4.00
490 491 2.093106 ACTCTGAACTACGCTACCCAG 58.907 52.381 0.00 0.00 0.00 4.45
491 492 2.211250 ACTCTGAACTACGCTACCCA 57.789 50.000 0.00 0.00 0.00 4.51
492 493 3.251571 CAAACTCTGAACTACGCTACCC 58.748 50.000 0.00 0.00 0.00 3.69
493 494 3.057033 TCCAAACTCTGAACTACGCTACC 60.057 47.826 0.00 0.00 0.00 3.18
494 495 3.919197 GTCCAAACTCTGAACTACGCTAC 59.081 47.826 0.00 0.00 0.00 3.58
495 496 3.570975 TGTCCAAACTCTGAACTACGCTA 59.429 43.478 0.00 0.00 0.00 4.26
496 497 2.364324 TGTCCAAACTCTGAACTACGCT 59.636 45.455 0.00 0.00 0.00 5.07
497 498 2.750948 TGTCCAAACTCTGAACTACGC 58.249 47.619 0.00 0.00 0.00 4.42
498 499 3.123621 GCATGTCCAAACTCTGAACTACG 59.876 47.826 0.00 0.00 0.00 3.51
499 500 3.437049 GGCATGTCCAAACTCTGAACTAC 59.563 47.826 0.00 0.00 34.01 2.73
500 501 3.072330 TGGCATGTCCAAACTCTGAACTA 59.928 43.478 6.42 0.00 43.21 2.24
501 502 2.158623 TGGCATGTCCAAACTCTGAACT 60.159 45.455 6.42 0.00 43.21 3.01
502 503 2.229792 TGGCATGTCCAAACTCTGAAC 58.770 47.619 6.42 0.00 43.21 3.18
503 504 2.655090 TGGCATGTCCAAACTCTGAA 57.345 45.000 6.42 0.00 43.21 3.02
562 563 0.331278 TCCATCGGGCTCCACAATTT 59.669 50.000 0.00 0.00 0.00 1.82
572 573 3.514309 ACCAATATACTACTCCATCGGGC 59.486 47.826 0.00 0.00 0.00 6.13
574 575 5.048224 ACGAACCAATATACTACTCCATCGG 60.048 44.000 0.00 0.00 0.00 4.18
575 576 6.010294 ACGAACCAATATACTACTCCATCG 57.990 41.667 0.00 0.00 0.00 3.84
576 577 7.659186 AGAACGAACCAATATACTACTCCATC 58.341 38.462 0.00 0.00 0.00 3.51
577 578 7.598759 AGAACGAACCAATATACTACTCCAT 57.401 36.000 0.00 0.00 0.00 3.41
578 579 7.776969 AGTAGAACGAACCAATATACTACTCCA 59.223 37.037 0.00 0.00 35.85 3.86
579 580 8.164058 AGTAGAACGAACCAATATACTACTCC 57.836 38.462 0.00 0.00 35.85 3.85
599 607 4.955811 TGCTTCCTCTTGTGAAAGTAGA 57.044 40.909 0.00 0.00 0.00 2.59
609 617 2.554032 ACCGATTTGTTGCTTCCTCTTG 59.446 45.455 0.00 0.00 0.00 3.02
666 674 5.163824 GCTGATTGCCTATTTTGCCTTTTTC 60.164 40.000 0.00 0.00 35.15 2.29
672 680 3.119029 TGAAGCTGATTGCCTATTTTGCC 60.119 43.478 0.00 0.00 44.23 4.52
698 706 3.541632 TGACTGGTTTGGTTTGAGAGAC 58.458 45.455 0.00 0.00 0.00 3.36
729 737 7.739498 TTCTTCCTGTTATTTTACTCACCAC 57.261 36.000 0.00 0.00 0.00 4.16
739 747 5.163519 CCATGGCGATTTCTTCCTGTTATTT 60.164 40.000 0.00 0.00 0.00 1.40
766 774 2.544726 GTGACCAGCACAAGTAGCC 58.455 57.895 0.00 0.00 46.91 3.93
775 783 2.029518 CGCTGTCAGTGACCAGCA 59.970 61.111 30.00 12.58 36.92 4.41
796 804 7.370836 GCAATCTCGTCTACAAATTAATCAACG 59.629 37.037 0.00 0.00 0.00 4.10
798 806 8.175069 GTGCAATCTCGTCTACAAATTAATCAA 58.825 33.333 0.00 0.00 0.00 2.57
800 808 7.684670 TGTGCAATCTCGTCTACAAATTAATC 58.315 34.615 0.00 0.00 0.00 1.75
801 809 7.609760 TGTGCAATCTCGTCTACAAATTAAT 57.390 32.000 0.00 0.00 0.00 1.40
802 810 7.386573 TCTTGTGCAATCTCGTCTACAAATTAA 59.613 33.333 0.00 0.00 0.00 1.40
804 812 5.700832 TCTTGTGCAATCTCGTCTACAAATT 59.299 36.000 0.00 0.00 0.00 1.82
902 910 1.523934 CGGTACAAAACAGTCGTCCAC 59.476 52.381 0.00 0.00 0.00 4.02
928 937 3.576356 GGATCGTGCGTGGCATGG 61.576 66.667 9.08 0.00 44.68 3.66
1027 1076 1.448540 CGCCTCCGTCATTGCTCTT 60.449 57.895 0.00 0.00 0.00 2.85
1134 1183 2.933287 ATGGAAGACACCCCGCCA 60.933 61.111 0.00 0.00 0.00 5.69
1164 1213 1.741770 CTCCGGGAAGAACTTGCGG 60.742 63.158 0.00 6.64 0.00 5.69
1392 1444 1.262417 TGGCCATGTAGACGTTCAGA 58.738 50.000 0.00 0.00 0.00 3.27
1470 1602 0.249238 GCGCCATCTCAGACAGGTAG 60.249 60.000 0.00 0.00 0.00 3.18
1551 1683 1.210155 GTTGATCACGTTGGCTGCC 59.790 57.895 12.87 12.87 0.00 4.85
1554 1686 1.148310 CGAAGTTGATCACGTTGGCT 58.852 50.000 0.00 0.00 0.00 4.75
1804 1945 3.064324 GCTTCTGCCGGTTGCCAT 61.064 61.111 1.90 0.00 40.16 4.40
2354 2504 0.250901 GAATATGCCGGCCCTCATGT 60.251 55.000 26.77 5.87 0.00 3.21
2552 2702 4.082845 TGATCGACTCTGTTTCTCTCCTT 58.917 43.478 0.00 0.00 0.00 3.36
2563 2713 3.706802 ACTGCACTATGATCGACTCTG 57.293 47.619 0.00 0.00 0.00 3.35
2566 2716 4.158579 TCTGAAACTGCACTATGATCGACT 59.841 41.667 0.00 0.00 0.00 4.18
2567 2717 4.424626 TCTGAAACTGCACTATGATCGAC 58.575 43.478 0.00 0.00 0.00 4.20
2570 2720 9.920133 TTATATCTCTGAAACTGCACTATGATC 57.080 33.333 0.00 0.00 0.00 2.92
2576 2726 9.270640 GATGATTTATATCTCTGAAACTGCACT 57.729 33.333 0.00 0.00 0.00 4.40
2577 2727 9.049523 TGATGATTTATATCTCTGAAACTGCAC 57.950 33.333 0.00 0.00 0.00 4.57
2578 2728 9.788889 ATGATGATTTATATCTCTGAAACTGCA 57.211 29.630 0.00 0.00 0.00 4.41
2593 2763 6.151480 TGTCTGTTGTGTGCATGATGATTTAT 59.849 34.615 0.00 0.00 0.00 1.40
2607 2777 3.315191 GGTATTTGTGCTGTCTGTTGTGT 59.685 43.478 0.00 0.00 0.00 3.72
2619 2789 5.477510 TGATTTGATGGTTGGTATTTGTGC 58.522 37.500 0.00 0.00 0.00 4.57
2651 2821 4.272018 GTGCGATCTCTGAAAATGTATGCT 59.728 41.667 0.00 0.00 0.00 3.79
2659 2829 4.518590 TCCATTTTGTGCGATCTCTGAAAA 59.481 37.500 0.00 0.00 0.00 2.29
2683 2853 9.761504 CATACAGTGATCTACAATCTTTCATCT 57.238 33.333 0.00 0.00 0.00 2.90
2713 2883 5.693555 CAGTATCGAGCAATAATGAAGAGCA 59.306 40.000 0.00 0.00 30.67 4.26
2728 2898 7.525688 TTTTCTGAACTAATGCAGTATCGAG 57.474 36.000 0.00 0.00 36.04 4.04
2755 2925 1.352156 GACTGCGCGTTCAGGGTAAG 61.352 60.000 16.46 0.00 38.36 2.34
2770 2940 6.018994 GCGTAAAGGGTAATCTACAATGACTG 60.019 42.308 0.00 0.00 0.00 3.51
2799 2969 2.418334 CCCAACCCTTCTAGTAAGCGAC 60.418 54.545 0.00 0.00 0.00 5.19
2802 2972 1.742750 CGCCCAACCCTTCTAGTAAGC 60.743 57.143 0.00 0.00 0.00 3.09
2829 2999 1.668751 CAATAATACCAACGGCGCAGT 59.331 47.619 10.83 9.16 0.00 4.40
2864 3035 9.239551 ACCCTATTTTAAACAAGGTGAGTAATC 57.760 33.333 12.06 0.00 0.00 1.75
3032 3224 7.857734 TGATCAAGTTCGGAGCAAAAATATA 57.142 32.000 0.00 0.00 0.00 0.86
3121 3316 2.622190 CCCGCCCCTACCAAACTAATTT 60.622 50.000 0.00 0.00 0.00 1.82
3122 3317 1.064240 CCCGCCCCTACCAAACTAATT 60.064 52.381 0.00 0.00 0.00 1.40
3123 3318 0.549469 CCCGCCCCTACCAAACTAAT 59.451 55.000 0.00 0.00 0.00 1.73
3137 3332 1.145377 CACATAGTACCACCCCGCC 59.855 63.158 0.00 0.00 0.00 6.13
3139 3334 2.773993 AAACACATAGTACCACCCCG 57.226 50.000 0.00 0.00 0.00 5.73
3193 3394 6.926826 TGGATAACACATAATCATACCACGAC 59.073 38.462 0.00 0.00 0.00 4.34
3232 3439 6.405286 CGGCATAGAAATGTTCCCACATAAAA 60.405 38.462 0.00 0.00 43.34 1.52
3269 3476 7.433680 TGTGATACTGTAGCACCAATATACTG 58.566 38.462 27.45 0.00 44.02 2.74
3271 3478 8.088365 TCATGTGATACTGTAGCACCAATATAC 58.912 37.037 27.45 6.46 44.02 1.47
3331 3538 9.365311 CGATATAAAACACATAACAATTCCGTC 57.635 33.333 0.00 0.00 0.00 4.79
3341 3548 5.294799 AGCAACCGCGATATAAAACACATAA 59.705 36.000 8.23 0.00 45.49 1.90
3347 3554 5.981174 TCAATAGCAACCGCGATATAAAAC 58.019 37.500 8.23 0.00 45.49 2.43
3351 3558 5.474825 TCAATCAATAGCAACCGCGATATA 58.525 37.500 8.23 0.00 45.49 0.86
3352 3559 4.314961 TCAATCAATAGCAACCGCGATAT 58.685 39.130 8.23 0.00 45.49 1.63
3353 3560 3.723260 TCAATCAATAGCAACCGCGATA 58.277 40.909 8.23 0.00 45.49 2.92
3354 3561 2.560504 TCAATCAATAGCAACCGCGAT 58.439 42.857 8.23 0.00 45.49 4.58
3355 3562 2.017138 TCAATCAATAGCAACCGCGA 57.983 45.000 8.23 0.00 45.49 5.87
3357 3564 4.671377 TCAAATCAATCAATAGCAACCGC 58.329 39.130 0.00 0.00 38.99 5.68
3484 3694 3.512219 TTTTGACCGGGTCACCTAATT 57.488 42.857 28.76 0.00 42.60 1.40
3485 3695 3.009695 TGATTTTGACCGGGTCACCTAAT 59.990 43.478 28.76 24.52 42.60 1.73
3486 3696 2.372504 TGATTTTGACCGGGTCACCTAA 59.627 45.455 28.76 21.43 42.60 2.69
3487 3697 1.979308 TGATTTTGACCGGGTCACCTA 59.021 47.619 28.76 16.82 42.60 3.08
3488 3698 0.768622 TGATTTTGACCGGGTCACCT 59.231 50.000 28.76 16.04 42.60 4.00
3489 3699 1.165270 CTGATTTTGACCGGGTCACC 58.835 55.000 28.76 17.57 42.60 4.02
3490 3700 1.165270 CCTGATTTTGACCGGGTCAC 58.835 55.000 28.76 17.59 42.60 3.67
3491 3701 0.608035 GCCTGATTTTGACCGGGTCA 60.608 55.000 25.53 25.53 41.09 4.02
3492 3702 1.644786 CGCCTGATTTTGACCGGGTC 61.645 60.000 20.36 20.36 0.00 4.46
3493 3703 1.674322 CGCCTGATTTTGACCGGGT 60.674 57.895 6.32 0.00 0.00 5.28
3494 3704 1.376683 TCGCCTGATTTTGACCGGG 60.377 57.895 6.32 0.00 0.00 5.73
3495 3705 1.644786 GGTCGCCTGATTTTGACCGG 61.645 60.000 0.00 0.00 41.26 5.28
3496 3706 1.794222 GGTCGCCTGATTTTGACCG 59.206 57.895 0.00 0.00 41.26 4.79
3498 3708 0.804989 CTGGGTCGCCTGATTTTGAC 59.195 55.000 0.00 0.00 0.00 3.18
3499 3709 0.400213 ACTGGGTCGCCTGATTTTGA 59.600 50.000 0.00 0.00 0.00 2.69
3500 3710 1.247567 AACTGGGTCGCCTGATTTTG 58.752 50.000 0.00 0.00 0.00 2.44
3501 3711 1.995376 AAACTGGGTCGCCTGATTTT 58.005 45.000 0.00 0.00 0.00 1.82
3502 3712 1.995376 AAAACTGGGTCGCCTGATTT 58.005 45.000 0.00 0.00 0.00 2.17
3503 3713 2.871096 TAAAACTGGGTCGCCTGATT 57.129 45.000 0.00 0.00 0.00 2.57
3504 3714 2.871096 TTAAAACTGGGTCGCCTGAT 57.129 45.000 0.00 0.00 0.00 2.90
3505 3715 2.642154 TTTAAAACTGGGTCGCCTGA 57.358 45.000 0.00 0.00 0.00 3.86
3506 3716 3.934457 AATTTAAAACTGGGTCGCCTG 57.066 42.857 0.00 0.00 0.00 4.85
3507 3717 4.828387 TGTTAATTTAAAACTGGGTCGCCT 59.172 37.500 0.00 0.00 0.00 5.52
3508 3718 5.123805 TGTTAATTTAAAACTGGGTCGCC 57.876 39.130 0.00 0.00 0.00 5.54
3509 3719 5.403166 GGTTGTTAATTTAAAACTGGGTCGC 59.597 40.000 0.00 0.00 0.00 5.19
3510 3720 6.741109 AGGTTGTTAATTTAAAACTGGGTCG 58.259 36.000 0.00 0.00 0.00 4.79
3511 3721 7.718525 TGAGGTTGTTAATTTAAAACTGGGTC 58.281 34.615 0.00 0.00 0.00 4.46
3512 3722 7.663043 TGAGGTTGTTAATTTAAAACTGGGT 57.337 32.000 0.00 0.00 0.00 4.51
3513 3723 9.554395 AATTGAGGTTGTTAATTTAAAACTGGG 57.446 29.630 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.