Multiple sequence alignment - TraesCS7A01G085800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G085800 chr7A 100.000 9034 0 0 1 9034 50024218 50033251 0.000000e+00 16683
1 TraesCS7A01G085800 chr7A 97.817 229 4 1 2324 2552 50031513 50031740 2.360000e-105 394
2 TraesCS7A01G085800 chr2D 94.102 5256 229 34 2323 7523 551931386 551926157 0.000000e+00 7914
3 TraesCS7A01G085800 chr2D 82.568 2811 441 27 4674 7457 32544598 32541810 0.000000e+00 2431
4 TraesCS7A01G085800 chr2D 92.887 239 6 3 2324 2552 551926394 551926157 4.040000e-88 337
5 TraesCS7A01G085800 chr4A 92.545 3917 213 31 3655 7524 607227773 607231657 0.000000e+00 5542
6 TraesCS7A01G085800 chr4A 94.885 2346 63 18 1 2324 662281188 662283498 0.000000e+00 3615
7 TraesCS7A01G085800 chr4A 85.799 2352 292 30 5093 7422 525723826 525721495 0.000000e+00 2455
8 TraesCS7A01G085800 chr4A 95.896 1267 48 3 7524 8789 662283493 662284756 0.000000e+00 2049
9 TraesCS7A01G085800 chr4A 94.027 586 24 3 2325 2900 607186975 607187559 0.000000e+00 878
10 TraesCS7A01G085800 chr4A 91.213 239 10 3 2324 2552 607231419 607231656 1.890000e-81 315
11 TraesCS7A01G085800 chr3A 92.878 2766 148 24 4425 7150 25095496 25092740 0.000000e+00 3971
12 TraesCS7A01G085800 chr3A 93.830 2107 116 8 2324 4420 25097507 25095405 0.000000e+00 3158
13 TraesCS7A01G085800 chr3A 90.417 240 11 3 2324 2552 25075138 25074900 1.140000e-78 305
14 TraesCS7A01G085800 chr3A 85.338 266 34 4 439 704 566874632 566874372 4.160000e-68 270
15 TraesCS7A01G085800 chr7D 95.897 2340 52 15 1 2324 47421482 47419171 0.000000e+00 3749
16 TraesCS7A01G085800 chr7D 81.357 2816 466 41 4686 7477 633162124 633159344 0.000000e+00 2237
17 TraesCS7A01G085800 chr7D 95.738 1267 49 3 7524 8789 47419176 47417914 0.000000e+00 2036
18 TraesCS7A01G085800 chr7D 92.670 191 12 2 8825 9014 47417835 47417646 3.210000e-69 274
19 TraesCS7A01G085800 chr3D 92.550 2416 150 17 5121 7525 567845815 567843419 0.000000e+00 3437
20 TraesCS7A01G085800 chr3D 91.627 1266 101 4 3156 4420 567847433 567846172 0.000000e+00 1746
21 TraesCS7A01G085800 chr3D 89.700 233 17 5 2324 2552 567843650 567843421 3.190000e-74 291
22 TraesCS7A01G085800 chr3D 79.287 449 65 13 4425 4846 567846263 567845816 1.150000e-73 289
23 TraesCS7A01G085800 chr3D 85.338 266 34 4 439 704 422528796 422529056 4.160000e-68 270
24 TraesCS7A01G085800 chr3D 85.075 268 34 5 439 704 590409733 590409470 1.500000e-67 268
25 TraesCS7A01G085800 chr4B 88.513 2751 287 13 4743 7478 491114668 491117404 0.000000e+00 3302
26 TraesCS7A01G085800 chr4B 86.275 255 30 3 439 693 358476440 358476191 1.160000e-68 272
27 TraesCS7A01G085800 chr6B 90.853 2110 180 11 2324 4426 665574266 665572163 0.000000e+00 2815
28 TraesCS7A01G085800 chr6B 89.464 1566 125 18 4444 5980 665572243 665570689 0.000000e+00 1941
29 TraesCS7A01G085800 chr6B 91.967 859 59 7 6670 7523 665562714 665561861 0.000000e+00 1195
30 TraesCS7A01G085800 chr6B 91.026 234 14 5 2324 2553 665562090 665561860 8.810000e-80 309
31 TraesCS7A01G085800 chr7B 80.007 2796 482 57 4713 7474 64430692 64433444 0.000000e+00 1995
32 TraesCS7A01G085800 chr7B 81.519 1856 309 26 2339 4177 64428372 64430210 0.000000e+00 1496
33 TraesCS7A01G085800 chr6D 83.590 1755 273 11 4695 6441 138665142 138663395 0.000000e+00 1631
34 TraesCS7A01G085800 chr3B 85.234 1517 196 21 2322 3816 794783004 794781494 0.000000e+00 1535
35 TraesCS7A01G085800 chr3B 85.493 1096 133 18 6393 7476 794764993 794763912 0.000000e+00 1120
36 TraesCS7A01G085800 chr3B 86.090 266 30 5 439 704 550652845 550653103 6.910000e-71 279
37 TraesCS7A01G085800 chr3B 78.528 163 33 2 4192 4353 794766155 794765994 1.240000e-18 106
38 TraesCS7A01G085800 chr6A 81.337 1645 292 12 2545 4185 610941221 610939588 0.000000e+00 1323
39 TraesCS7A01G085800 chr2B 81.830 1574 278 8 2557 4126 736398147 736396578 0.000000e+00 1315
40 TraesCS7A01G085800 chr2B 85.663 279 32 6 433 711 225571368 225571638 4.130000e-73 287
41 TraesCS7A01G085800 chr1B 81.537 1587 282 11 2545 4126 522054719 522053139 0.000000e+00 1297
42 TraesCS7A01G085800 chr2A 85.305 279 35 5 433 711 177658408 177658680 5.340000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G085800 chr7A 50024218 50033251 9033 False 8538.500000 16683 98.908500 1 9034 2 chr7A.!!$F1 9033
1 TraesCS7A01G085800 chr2D 551926157 551931386 5229 True 7914.000000 7914 94.102000 2323 7523 1 chr2D.!!$R2 5200
2 TraesCS7A01G085800 chr2D 32541810 32544598 2788 True 2431.000000 2431 82.568000 4674 7457 1 chr2D.!!$R1 2783
3 TraesCS7A01G085800 chr4A 607227773 607231657 3884 False 2928.500000 5542 91.879000 2324 7524 2 chr4A.!!$F2 5200
4 TraesCS7A01G085800 chr4A 662281188 662284756 3568 False 2832.000000 3615 95.390500 1 8789 2 chr4A.!!$F3 8788
5 TraesCS7A01G085800 chr4A 525721495 525723826 2331 True 2455.000000 2455 85.799000 5093 7422 1 chr4A.!!$R1 2329
6 TraesCS7A01G085800 chr4A 607186975 607187559 584 False 878.000000 878 94.027000 2325 2900 1 chr4A.!!$F1 575
7 TraesCS7A01G085800 chr3A 25092740 25097507 4767 True 3564.500000 3971 93.354000 2324 7150 2 chr3A.!!$R3 4826
8 TraesCS7A01G085800 chr7D 633159344 633162124 2780 True 2237.000000 2237 81.357000 4686 7477 1 chr7D.!!$R1 2791
9 TraesCS7A01G085800 chr7D 47417646 47421482 3836 True 2019.666667 3749 94.768333 1 9014 3 chr7D.!!$R2 9013
10 TraesCS7A01G085800 chr3D 567843419 567847433 4014 True 1440.750000 3437 88.291000 2324 7525 4 chr3D.!!$R2 5201
11 TraesCS7A01G085800 chr4B 491114668 491117404 2736 False 3302.000000 3302 88.513000 4743 7478 1 chr4B.!!$F1 2735
12 TraesCS7A01G085800 chr6B 665570689 665574266 3577 True 2378.000000 2815 90.158500 2324 5980 2 chr6B.!!$R2 3656
13 TraesCS7A01G085800 chr6B 665561860 665562714 854 True 752.000000 1195 91.496500 2324 7523 2 chr6B.!!$R1 5199
14 TraesCS7A01G085800 chr7B 64428372 64433444 5072 False 1745.500000 1995 80.763000 2339 7474 2 chr7B.!!$F1 5135
15 TraesCS7A01G085800 chr6D 138663395 138665142 1747 True 1631.000000 1631 83.590000 4695 6441 1 chr6D.!!$R1 1746
16 TraesCS7A01G085800 chr3B 794781494 794783004 1510 True 1535.000000 1535 85.234000 2322 3816 1 chr3B.!!$R1 1494
17 TraesCS7A01G085800 chr3B 794763912 794766155 2243 True 613.000000 1120 82.010500 4192 7476 2 chr3B.!!$R2 3284
18 TraesCS7A01G085800 chr6A 610939588 610941221 1633 True 1323.000000 1323 81.337000 2545 4185 1 chr6A.!!$R1 1640
19 TraesCS7A01G085800 chr2B 736396578 736398147 1569 True 1315.000000 1315 81.830000 2557 4126 1 chr2B.!!$R1 1569
20 TraesCS7A01G085800 chr1B 522053139 522054719 1580 True 1297.000000 1297 81.537000 2545 4126 1 chr1B.!!$R1 1581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.250252 TGCCTTGCACTGAATGACGA 60.250 50.000 0.0 0.0 31.71 4.20 F
671 685 1.013596 TTGACTTGCACGAACACTGG 58.986 50.000 0.0 0.0 0.00 4.00 F
2318 2345 0.719015 AGGAGAATCACAGGGGGAGA 59.281 55.000 0.0 0.0 36.25 3.71 F
2319 2346 1.081174 AGGAGAATCACAGGGGGAGAA 59.919 52.381 0.0 0.0 36.25 2.87 F
3991 4042 0.945813 CGTTTTTACCTTGCCGTGGA 59.054 50.000 0.0 0.0 0.00 4.02 F
4355 4429 0.321919 AGCTGACACGCCATCATTGT 60.322 50.000 0.0 0.0 0.00 2.71 F
4442 4543 1.140134 ACCAGGCCCAACAGGTACAT 61.140 55.000 0.0 0.0 38.26 2.29 F
5391 5538 1.317431 TGATGAGCATGTGGGCAAGC 61.317 55.000 0.0 0.0 39.38 4.01 F
6473 6661 0.248458 GGTGTTGTTGTTGGTGCGAG 60.248 55.000 0.0 0.0 0.00 5.03 F
7088 7314 0.175989 GGTCGAGGCAGGTTCCTTAG 59.824 60.000 0.0 0.0 36.38 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1683 1.302431 CCCAACCATCGTGTCTGCA 60.302 57.895 0.00 0.00 0.00 4.41 R
2509 2550 1.780919 AGGTTTAGCCAGGTTGGACTT 59.219 47.619 0.00 0.00 40.96 3.01 R
3991 4042 0.117340 AGACCTGGCACCTAGTTCCT 59.883 55.000 0.00 0.00 0.00 3.36 R
4304 4378 1.433121 GGATCCTCTGAGCCATCCTT 58.567 55.000 19.39 0.00 46.65 3.36 R
5901 6054 0.178068 ATGCGTTCGAGGGCTGTATT 59.822 50.000 10.53 0.00 0.00 1.89 R
6349 6507 0.969149 TCAAGTGTCAGATCTGCGGT 59.031 50.000 18.36 0.00 0.00 5.68 R
6401 6565 2.203280 CAACACCAAGGGTCGCCA 60.203 61.111 0.00 0.00 31.02 5.69 R
7088 7314 0.318784 GGCTACGTCGATGGATCCAC 60.319 60.000 18.99 10.34 0.00 4.02 R
7552 7801 0.398696 TTCCTTGCCCAACTCGCTTA 59.601 50.000 0.00 0.00 0.00 3.09 R
8495 8795 1.425066 TCACCTTCTGCCATCTTGGTT 59.575 47.619 0.00 0.00 40.46 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.624838 AGCAAAAGTTGTCCATCACCTG 59.375 45.455 0.00 0.00 0.00 4.00
69 70 6.613271 AGTTGTCCATCACCTGATAGTCTATT 59.387 38.462 0.00 0.00 32.63 1.73
112 113 0.759346 AACGACCTCTGACAAAGGCT 59.241 50.000 0.00 0.00 37.42 4.58
120 121 3.120060 CCTCTGACAAAGGCTGAAATTCG 60.120 47.826 0.00 0.00 0.00 3.34
122 123 3.498397 TCTGACAAAGGCTGAAATTCGAC 59.502 43.478 0.00 0.00 0.00 4.20
139 140 1.200716 CGACAATGCCTTGCACTGAAT 59.799 47.619 4.39 0.00 38.06 2.57
144 145 0.250252 TGCCTTGCACTGAATGACGA 60.250 50.000 0.00 0.00 31.71 4.20
150 151 4.024556 CCTTGCACTGAATGACGAATATCC 60.025 45.833 0.00 0.00 0.00 2.59
215 216 4.836125 TGCTGGAGTTCTCAAATTGAAC 57.164 40.909 0.00 0.00 42.77 3.18
289 290 9.985730 AAAACATATAATTATTGGCATGGTCTG 57.014 29.630 2.68 0.00 0.00 3.51
322 323 1.280998 ACCGGCACTATTTACTGGCTT 59.719 47.619 0.00 0.00 32.75 4.35
671 685 1.013596 TTGACTTGCACGAACACTGG 58.986 50.000 0.00 0.00 0.00 4.00
741 756 2.439507 AGATTATGGGTACTGCTGGGTG 59.560 50.000 0.00 0.00 0.00 4.61
758 773 4.298626 TGGGTGTTCCTGCTTAGAGATAT 58.701 43.478 0.00 0.00 36.20 1.63
815 830 3.689649 CCCTTTAGCCATTGACACTACAC 59.310 47.826 0.00 0.00 0.00 2.90
861 876 8.892887 TTGCAAAATCATGAACAAAAGAAAAC 57.107 26.923 0.00 0.00 0.00 2.43
1104 1121 7.120285 TCCTCACAAGAATTCATGATCAGAAAC 59.880 37.037 17.08 4.92 0.00 2.78
1568 1586 4.949856 AGGTACCTCTTGCCAAAACATATG 59.050 41.667 9.21 0.00 30.60 1.78
1615 1633 7.445121 TGAAGGCAGATAGGAACAATATACTG 58.555 38.462 0.00 0.00 0.00 2.74
1665 1683 4.957830 AGATCATGGGGCTAGAGATATGT 58.042 43.478 0.00 0.00 0.00 2.29
1832 1850 1.528824 CGAGATGATTGTGGGCCCT 59.471 57.895 25.70 0.66 0.00 5.19
1892 1910 5.663106 TCTGGATAGCTCTACCACTTTTCAT 59.337 40.000 0.00 0.00 0.00 2.57
2184 2211 3.242712 GCACGTTGATGAAACCAGTTTTG 59.757 43.478 0.00 0.00 35.13 2.44
2188 2215 5.929415 ACGTTGATGAAACCAGTTTTGTTTT 59.071 32.000 0.00 0.00 36.13 2.43
2318 2345 0.719015 AGGAGAATCACAGGGGGAGA 59.281 55.000 0.00 0.00 36.25 3.71
2319 2346 1.081174 AGGAGAATCACAGGGGGAGAA 59.919 52.381 0.00 0.00 36.25 2.87
2320 2347 1.916181 GGAGAATCACAGGGGGAGAAA 59.084 52.381 0.00 0.00 36.25 2.52
2383 2410 4.751098 GGCGACGGGTTCATGTTTATATAA 59.249 41.667 0.00 0.00 0.00 0.98
2458 2489 6.498651 TGGGATACAAGGGATAGAGAAGAATC 59.501 42.308 0.00 0.00 39.74 2.52
2562 2608 4.017499 AGCATGTTTAACACTCCCCCTTAT 60.017 41.667 0.00 0.00 0.00 1.73
2742 2788 2.401583 ATGTGCTTCGTTCTGGCATA 57.598 45.000 0.00 0.00 38.27 3.14
2799 2845 3.081061 GGTTGTCACACCATAAGCATGA 58.919 45.455 0.00 0.00 36.73 3.07
2911 2958 4.673441 CCTCTGTACTTGACCTTGATACG 58.327 47.826 0.00 0.00 0.00 3.06
2962 3009 3.017442 GAGATTAGGCCCAAAGAACACC 58.983 50.000 0.00 0.00 0.00 4.16
3011 3058 1.414866 TACACAGCCTGCCCAGTCAA 61.415 55.000 0.00 0.00 0.00 3.18
3030 3077 4.754114 GTCAAAGTCTGAGAAAGCACTGAT 59.246 41.667 0.00 0.00 33.60 2.90
3036 3083 4.092675 GTCTGAGAAAGCACTGATAAGCAC 59.907 45.833 0.00 0.00 0.00 4.40
3038 3085 4.388485 TGAGAAAGCACTGATAAGCACAA 58.612 39.130 0.00 0.00 0.00 3.33
3142 3189 4.012374 CAGTAGTGGGTGCATGAAGAAAT 58.988 43.478 0.00 0.00 0.00 2.17
3340 3391 4.388577 ACCAGCCCTTTTTACAAGATCT 57.611 40.909 0.00 0.00 0.00 2.75
3814 3865 6.461509 CCCTGAAAACAGCAATAGACAAAACT 60.462 38.462 0.00 0.00 0.00 2.66
3826 3877 3.751518 AGACAAAACTAGGCGAATGGTT 58.248 40.909 0.00 0.00 0.00 3.67
3902 3953 4.393371 GCTTAAAACCTTTTGCAACCAACA 59.607 37.500 0.00 0.00 0.00 3.33
3972 4023 4.558538 AAACTCACTTGCAGTCAATCAC 57.441 40.909 0.00 0.00 0.00 3.06
3991 4042 0.945813 CGTTTTTACCTTGCCGTGGA 59.054 50.000 0.00 0.00 0.00 4.02
4304 4378 3.695606 GCAGAGGCGGAGGTGACA 61.696 66.667 0.00 0.00 0.00 3.58
4306 4380 1.079543 CAGAGGCGGAGGTGACAAG 60.080 63.158 0.00 0.00 0.00 3.16
4313 4387 1.903877 CGGAGGTGACAAGGATGGCT 61.904 60.000 0.00 0.00 34.75 4.75
4326 4400 1.422531 GATGGCTCAGAGGATCCTGT 58.577 55.000 22.02 13.63 35.71 4.00
4353 4427 2.283298 CTTAGCTGACACGCCATCATT 58.717 47.619 0.00 0.00 0.00 2.57
4355 4429 0.321919 AGCTGACACGCCATCATTGT 60.322 50.000 0.00 0.00 0.00 2.71
4435 4536 4.947147 GTCGCACCAGGCCCAACA 62.947 66.667 0.00 0.00 40.31 3.33
4438 4539 4.603535 GCACCAGGCCCAACAGGT 62.604 66.667 0.00 0.00 38.26 4.00
4441 4542 1.772567 ACCAGGCCCAACAGGTACA 60.773 57.895 0.00 0.00 38.26 2.90
4442 4543 1.140134 ACCAGGCCCAACAGGTACAT 61.140 55.000 0.00 0.00 38.26 2.29
4503 4604 3.025924 CATCAGGTGCAGGTTGTGT 57.974 52.632 0.00 0.00 0.00 3.72
4515 4622 3.617735 TTGTGTAGCGTGCCGGGA 61.618 61.111 2.18 0.00 0.00 5.14
4601 4711 2.586079 CGGAATCAGGCGCGTCAT 60.586 61.111 15.58 0.00 0.00 3.06
4602 4712 2.589492 CGGAATCAGGCGCGTCATC 61.589 63.158 15.58 5.31 0.00 2.92
4767 4904 2.350388 GCGGCGGACACATAAAATATGG 60.350 50.000 9.78 0.00 0.00 2.74
4771 4908 2.556622 CGGACACATAAAATATGGCCCC 59.443 50.000 0.00 0.00 38.41 5.80
4798 4935 6.685767 CGCCACATTATTTTCTTCATTTTCG 58.314 36.000 0.00 0.00 0.00 3.46
4882 5028 6.484288 AGAATCAGTCAATATTGGTTCACCA 58.516 36.000 15.36 0.00 45.94 4.17
4898 5044 3.761897 TCACCACAACTATTTTCCCCTG 58.238 45.455 0.00 0.00 0.00 4.45
4904 5050 4.582656 CACAACTATTTTCCCCTGTGACAA 59.417 41.667 0.00 0.00 37.03 3.18
5377 5524 1.522668 CTGACCCGTTTTGCTGATGA 58.477 50.000 0.00 0.00 0.00 2.92
5391 5538 1.317431 TGATGAGCATGTGGGCAAGC 61.317 55.000 0.00 0.00 39.38 4.01
5547 5695 7.869800 ACTTGAAACACATCAGATCTTTTCTC 58.130 34.615 13.67 0.00 29.93 2.87
5579 5727 9.487790 GATAGATCCAGGAATATTTGCTATAGC 57.512 37.037 18.18 18.18 42.50 2.97
5822 5975 5.881923 AGAAAATGATGCATGCCCTAAAT 57.118 34.783 16.68 0.26 0.00 1.40
5901 6054 4.081642 CCTCCTAAGTTCAGGAATCAACGA 60.082 45.833 0.00 0.00 44.18 3.85
6087 6242 6.097915 TCTAAGATGAAGTTTTCGGTGAGT 57.902 37.500 0.00 0.00 0.00 3.41
6123 6278 7.335422 AGTTGAGTGACCAATATGACAGATTTC 59.665 37.037 0.00 0.00 0.00 2.17
6349 6507 4.096003 GCGGAGTGCCCCAGCTTA 62.096 66.667 0.00 0.00 40.80 3.09
6383 6541 2.842394 CTTGACAGCGTCAGGGCGAT 62.842 60.000 11.19 0.00 43.69 4.58
6401 6565 3.676324 GCGATACCTAGCAGAGTTGTTGT 60.676 47.826 0.00 0.00 0.00 3.32
6467 6655 0.528249 GCTGCTGGTGTTGTTGTTGG 60.528 55.000 0.00 0.00 0.00 3.77
6468 6656 0.817013 CTGCTGGTGTTGTTGTTGGT 59.183 50.000 0.00 0.00 0.00 3.67
6470 6658 0.805711 GCTGGTGTTGTTGTTGGTGC 60.806 55.000 0.00 0.00 0.00 5.01
6472 6660 0.960861 TGGTGTTGTTGTTGGTGCGA 60.961 50.000 0.00 0.00 0.00 5.10
6473 6661 0.248458 GGTGTTGTTGTTGGTGCGAG 60.248 55.000 0.00 0.00 0.00 5.03
6474 6662 0.248458 GTGTTGTTGTTGGTGCGAGG 60.248 55.000 0.00 0.00 0.00 4.63
6475 6663 1.358759 GTTGTTGTTGGTGCGAGGG 59.641 57.895 0.00 0.00 0.00 4.30
6476 6664 1.077357 TTGTTGTTGGTGCGAGGGT 60.077 52.632 0.00 0.00 0.00 4.34
6477 6665 0.681564 TTGTTGTTGGTGCGAGGGTT 60.682 50.000 0.00 0.00 0.00 4.11
6478 6666 1.358759 GTTGTTGGTGCGAGGGTTG 59.641 57.895 0.00 0.00 0.00 3.77
6479 6667 1.077357 TTGTTGGTGCGAGGGTTGT 60.077 52.632 0.00 0.00 0.00 3.32
6480 6668 0.681564 TTGTTGGTGCGAGGGTTGTT 60.682 50.000 0.00 0.00 0.00 2.83
6593 6802 0.934496 CTTGAAGCCGTTGTCGTTGA 59.066 50.000 0.00 0.00 35.01 3.18
6865 7091 3.559655 GTGCTATGCGGATGTTGTTGATA 59.440 43.478 0.00 0.00 0.00 2.15
6918 7144 1.517694 GCGCCGTCCAAAGATCGTA 60.518 57.895 0.00 0.00 0.00 3.43
7009 7235 3.054139 CCTGTTGATCTTCCCTGATCCAA 60.054 47.826 0.00 0.00 41.42 3.53
7030 7256 2.323999 TTGAATGCAGGGGATTTGGT 57.676 45.000 0.00 0.00 0.00 3.67
7087 7313 1.601419 CGGTCGAGGCAGGTTCCTTA 61.601 60.000 0.00 0.00 36.38 2.69
7088 7314 0.175989 GGTCGAGGCAGGTTCCTTAG 59.824 60.000 0.00 0.00 36.38 2.18
7117 7343 1.515736 GACGTAGCCGAAGAACCCG 60.516 63.158 0.00 0.00 37.88 5.28
7245 7474 0.251341 GAGGACATGGTGGCTTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
7278 7507 7.054751 TCGAGAACTAGATGTAATGGAAGAGA 58.945 38.462 0.00 0.00 0.00 3.10
7314 7545 5.212745 ACCATGTGGAAAGTTTAGGGAAAA 58.787 37.500 5.96 0.00 38.94 2.29
7429 7668 7.546250 TGGGATACAAGGATAGAGAAGAATC 57.454 40.000 0.00 0.00 39.74 2.52
7502 7751 1.145571 TCCAACCTGGCTAAACCTGT 58.854 50.000 0.00 0.00 37.47 4.00
7535 7784 8.801715 AGCATGTTTAACAAAAACTACATGAG 57.198 30.769 15.01 0.00 43.26 2.90
7552 7801 1.985159 TGAGCAAAGTGTACCTCCCAT 59.015 47.619 0.00 0.00 0.00 4.00
7557 7806 2.936498 CAAAGTGTACCTCCCATAAGCG 59.064 50.000 0.00 0.00 0.00 4.68
7581 7830 0.528017 GGGCAAGGAAGCTTTAGCAC 59.472 55.000 0.00 0.00 45.16 4.40
7655 7904 4.043435 AGGGAAGCACTCCTAATGAAAAGT 59.957 41.667 4.98 0.00 44.68 2.66
7797 8096 7.011016 CCATTATTGCACTCGTAACAATGTCTA 59.989 37.037 0.00 0.00 31.84 2.59
7835 8134 5.082059 CGCATGACAATAAGTTTCACTCAC 58.918 41.667 0.00 0.00 0.00 3.51
7847 8146 6.224420 AGTTTCACTCACGCAAATTACTAC 57.776 37.500 0.00 0.00 0.00 2.73
7850 8149 6.795098 TTCACTCACGCAAATTACTACATT 57.205 33.333 0.00 0.00 0.00 2.71
7960 8259 7.138692 ACAAGCAAAAGAGCTACTATTTCTG 57.861 36.000 0.00 0.00 45.89 3.02
8012 8311 2.302157 AGTCCTAAAGGTCCCTGTTTCG 59.698 50.000 0.00 0.00 36.34 3.46
8018 8317 5.361857 CCTAAAGGTCCCTGTTTCGATACTA 59.638 44.000 7.53 0.00 0.00 1.82
8033 8332 6.796705 TCGATACTAGATTCGCTTGTATGA 57.203 37.500 12.25 0.00 42.81 2.15
8078 8377 9.455847 GGTATTAGTTATACACCTACTGTTTCG 57.544 37.037 2.01 0.00 40.80 3.46
8093 8392 7.931948 CCTACTGTTTCGAGGTAATTATGGAAT 59.068 37.037 0.00 0.00 0.00 3.01
8215 8515 4.533707 TCTTCTCCATCATTCAGTCACCTT 59.466 41.667 0.00 0.00 0.00 3.50
8309 8609 4.715297 ACAGTATTCCTTACATTCGGAGGT 59.285 41.667 0.00 0.00 32.87 3.85
8337 8637 7.403231 TCATTCTTCCCAAGAGTAAGATAACCT 59.597 37.037 0.00 0.00 39.03 3.50
8347 8647 9.383519 CAAGAGTAAGATAACCTTTGCTCATTA 57.616 33.333 5.40 0.00 37.75 1.90
8386 8686 9.640952 TTATAGCCCTAGCAAATCTAAACAAAT 57.359 29.630 0.00 0.00 43.56 2.32
8448 8748 6.238925 GGTTAAACTGGGGATTTTGGATATCG 60.239 42.308 0.00 0.00 0.00 2.92
8491 8791 6.903883 TCAGCATAGTTCTTAACGAATTCC 57.096 37.500 0.00 0.00 36.23 3.01
8495 8795 5.815740 GCATAGTTCTTAACGAATTCCTGGA 59.184 40.000 0.00 0.00 36.23 3.86
8746 9047 6.350110 GCTTTTGGATTGGCACTAGATTACAA 60.350 38.462 0.00 0.00 0.00 2.41
8750 9051 6.245408 TGGATTGGCACTAGATTACAAAACT 58.755 36.000 0.00 0.00 0.00 2.66
8772 9073 7.813852 ACTCGTAAGTTTGCTACTAATGAAG 57.186 36.000 0.00 0.00 35.54 3.02
8782 9083 9.974750 GTTTGCTACTAATGAAGAAAGTACATC 57.025 33.333 0.00 0.00 0.00 3.06
8829 9144 7.714377 TGTGATTTGAAATACAGCAAATTTGGT 59.286 29.630 16.92 16.92 42.81 3.67
8830 9145 9.202273 GTGATTTGAAATACAGCAAATTTGGTA 57.798 29.630 21.61 14.61 42.81 3.25
8844 9189 7.763985 AGCAAATTTGGTAATATAACTGGTTGC 59.236 33.333 20.81 0.00 37.09 4.17
8852 9197 6.488683 GGTAATATAACTGGTTGCCATTGCTA 59.511 38.462 0.00 0.00 38.71 3.49
8864 9209 6.040391 GGTTGCCATTGCTAGGTATAATTTCA 59.960 38.462 0.00 0.00 38.71 2.69
8888 9233 7.661437 TCAAAATATCCACTCGATCCCAAATAG 59.339 37.037 0.00 0.00 31.92 1.73
8913 9258 8.747538 GTTTTGGGTAAACTCATCCATATAGT 57.252 34.615 0.00 0.00 42.32 2.12
8986 9331 9.832445 AAAGTACAGACTGAAAAGATCAAACTA 57.168 29.630 10.08 0.00 37.67 2.24
9026 9371 8.586570 AGACTTCACAAATATCTCGATGAATC 57.413 34.615 0.00 0.00 0.00 2.52
9027 9372 8.420222 AGACTTCACAAATATCTCGATGAATCT 58.580 33.333 0.00 0.00 0.00 2.40
9028 9373 9.684448 GACTTCACAAATATCTCGATGAATCTA 57.316 33.333 0.00 0.00 0.00 1.98
9029 9374 9.689976 ACTTCACAAATATCTCGATGAATCTAG 57.310 33.333 0.00 0.00 0.00 2.43
9030 9375 9.905171 CTTCACAAATATCTCGATGAATCTAGA 57.095 33.333 0.00 0.00 33.83 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.974622 ACAACTTTTGCTTTTGATGTGAGTAG 59.025 34.615 0.00 0.00 0.00 2.57
69 70 5.528043 ACCATGTGCAACTAATGAAAACA 57.472 34.783 0.00 0.00 38.04 2.83
112 113 2.295629 TGCAAGGCATTGTCGAATTTCA 59.704 40.909 13.30 0.00 38.76 2.69
120 121 2.229543 TCATTCAGTGCAAGGCATTGTC 59.770 45.455 13.30 5.81 44.63 3.18
122 123 2.602878 GTCATTCAGTGCAAGGCATTG 58.397 47.619 6.76 6.76 45.46 2.82
139 140 7.592533 GCAACTTAAGTATACGGATATTCGTCA 59.407 37.037 13.51 0.00 42.82 4.35
178 179 1.338973 CAGCATCAGTTGTTGGCTTGT 59.661 47.619 0.00 0.00 33.26 3.16
179 180 2.060326 CAGCATCAGTTGTTGGCTTG 57.940 50.000 0.00 0.00 33.26 4.01
184 185 3.144506 AGAACTCCAGCATCAGTTGTTG 58.855 45.455 0.00 0.00 36.39 3.33
185 186 3.181451 TGAGAACTCCAGCATCAGTTGTT 60.181 43.478 0.00 0.00 32.83 2.83
186 187 2.369860 TGAGAACTCCAGCATCAGTTGT 59.630 45.455 0.00 0.00 32.83 3.32
215 216 2.067932 TTGCTGGGGAGTTGGGACAG 62.068 60.000 0.00 0.00 42.39 3.51
289 290 0.808125 TGCCGGTTTCATACATGTGC 59.192 50.000 9.11 0.00 0.00 4.57
336 337 5.866159 TCAGCAGTCAGTATCTTCATGAT 57.134 39.130 0.00 0.00 39.11 2.45
671 685 5.448632 CCGTTCCAGAATATAAAAGGTGCAC 60.449 44.000 8.80 8.80 0.00 4.57
741 756 6.817184 TGTGGTTATATCTCTAAGCAGGAAC 58.183 40.000 0.00 0.00 39.14 3.62
758 773 3.141398 CTGCTCTGCTTTTCTGTGGTTA 58.859 45.455 0.00 0.00 0.00 2.85
815 830 8.351495 TGCAAAATTGTAGCTTTGAAACTAAG 57.649 30.769 0.00 0.00 35.03 2.18
859 874 6.019156 CGTTACATTCAGTTTGCCATTTTGTT 60.019 34.615 0.00 0.00 0.00 2.83
861 876 5.689514 TCGTTACATTCAGTTTGCCATTTTG 59.310 36.000 0.00 0.00 0.00 2.44
1249 1266 1.806496 TGCCAGCCAGTACATAGGAT 58.194 50.000 0.00 0.00 0.00 3.24
1568 1586 5.123820 TCAGCACCAAGTTATGCATAAACTC 59.876 40.000 20.46 8.88 44.59 3.01
1615 1633 9.979270 CAAATAAATCAGTAGTGTGATTCTGTC 57.021 33.333 0.00 0.00 44.72 3.51
1665 1683 1.302431 CCCAACCATCGTGTCTGCA 60.302 57.895 0.00 0.00 0.00 4.41
1892 1910 8.243426 GTCAGTTGCTGGAAACAATTGATTATA 58.757 33.333 13.59 0.00 43.02 0.98
2275 2302 8.141909 CCTTGAACATGCTTGATAATTCATGAT 58.858 33.333 6.60 0.00 38.77 2.45
2318 2345 6.860790 TTTCCCTAAACTTTCCACAGTTTT 57.139 33.333 4.25 0.00 43.17 2.43
2319 2346 6.626402 CGTTTTCCCTAAACTTTCCACAGTTT 60.626 38.462 4.37 4.37 46.54 2.66
2320 2347 5.163591 CGTTTTCCCTAAACTTTCCACAGTT 60.164 40.000 0.00 0.00 43.21 3.16
2509 2550 1.780919 AGGTTTAGCCAGGTTGGACTT 59.219 47.619 0.00 0.00 40.96 3.01
2799 2845 2.427095 GGCATTAAACGGATTCCAGCTT 59.573 45.455 3.09 0.00 0.00 3.74
2911 2958 1.134848 TGTGCAAAGAAACAAGCCACC 60.135 47.619 0.00 0.00 0.00 4.61
2962 3009 2.418628 ACGATCAATAGGTGGTTTTGCG 59.581 45.455 0.00 0.00 0.00 4.85
3011 3058 4.934602 GCTTATCAGTGCTTTCTCAGACTT 59.065 41.667 0.00 0.00 0.00 3.01
3038 3085 8.859090 TGGTCTTACTTTCAACAAATCATCATT 58.141 29.630 0.00 0.00 0.00 2.57
3050 3097 5.633655 TTGGGTACTGGTCTTACTTTCAA 57.366 39.130 0.00 0.00 0.00 2.69
3289 3340 3.713826 TGTAAACCCTCATCAACTCCC 57.286 47.619 0.00 0.00 0.00 4.30
3340 3391 4.713553 TGTCTCAGGAAAAGTATGCAACA 58.286 39.130 0.00 0.00 0.00 3.33
3443 3494 3.496870 GGACTGTTGAGGGATTTGAGTGT 60.497 47.826 0.00 0.00 0.00 3.55
3528 3579 9.349713 TCATTTACAACAAGTCAAATACTTCCT 57.650 29.630 0.00 0.00 45.64 3.36
3707 3758 5.421056 AGGACGTCTATATGAAACAACCTCA 59.579 40.000 16.46 0.00 0.00 3.86
3814 3865 0.322456 AAGCTGCAACCATTCGCCTA 60.322 50.000 1.02 0.00 0.00 3.93
3826 3877 5.477607 TTAGTCCAGTAGTAAAAGCTGCA 57.522 39.130 1.02 0.00 0.00 4.41
3972 4023 0.945813 TCCACGGCAAGGTAAAAACG 59.054 50.000 0.00 0.00 0.00 3.60
3991 4042 0.117340 AGACCTGGCACCTAGTTCCT 59.883 55.000 0.00 0.00 0.00 3.36
4242 4312 2.268920 GTCGATCCAAGCCAGCCA 59.731 61.111 0.00 0.00 0.00 4.75
4304 4378 1.433121 GGATCCTCTGAGCCATCCTT 58.567 55.000 19.39 0.00 46.65 3.36
4313 4387 4.894719 TGGCACAGGATCCTCTGA 57.105 55.556 20.23 0.00 38.11 3.27
4326 4400 1.003355 GTGTCAGCTAAGCCTGGCA 60.003 57.895 22.65 0.00 44.50 4.92
4334 4408 2.009051 CAATGATGGCGTGTCAGCTAA 58.991 47.619 0.00 0.00 37.29 3.09
4353 4427 2.349672 CCGGCCCAATCATTGCACA 61.350 57.895 0.00 0.00 0.00 4.57
4355 4429 2.037049 ACCGGCCCAATCATTGCA 59.963 55.556 0.00 0.00 0.00 4.08
4423 4524 1.140134 ATGTACCTGTTGGGCCTGGT 61.140 55.000 4.53 10.46 39.63 4.00
4433 4534 1.811558 GCGCCATGATGATGTACCTGT 60.812 52.381 0.00 0.00 0.00 4.00
4435 4536 0.601046 CGCGCCATGATGATGTACCT 60.601 55.000 0.00 0.00 0.00 3.08
4438 4539 1.000731 TCATCGCGCCATGATGATGTA 59.999 47.619 13.99 2.03 45.37 2.29
4476 4577 2.191375 CACCTGATGCGCCTCCAT 59.809 61.111 4.18 0.00 0.00 3.41
4515 4622 2.020720 CTGATGAGACTCGGTGCTACT 58.979 52.381 0.00 0.00 0.00 2.57
4525 4632 1.557269 GGTGGCCCACTGATGAGACT 61.557 60.000 14.71 0.00 34.40 3.24
4557 4664 2.989824 AGTCCGCTACTGCCACGT 60.990 61.111 0.00 0.00 36.93 4.49
4583 4693 4.812476 TGACGCGCCTGATTCCGG 62.812 66.667 5.73 0.00 0.00 5.14
4771 4908 2.159448 TGAAGAAAATAATGTGGCGCCG 60.159 45.455 23.90 0.00 0.00 6.46
4798 4935 6.089954 GTGAAAATACAGAAGAAATTGCTGCC 59.910 38.462 0.00 0.00 33.03 4.85
4832 4978 2.297880 ACAGCATGCATGAGCTTTTTGA 59.702 40.909 30.64 0.00 42.53 2.69
4882 5028 4.447138 TGTCACAGGGGAAAATAGTTGT 57.553 40.909 0.00 0.00 0.00 3.32
4898 5044 1.148310 CATCTCACCGGTGTTGTCAC 58.852 55.000 32.74 0.00 43.19 3.67
4904 5050 1.544825 CCCTCACATCTCACCGGTGT 61.545 60.000 32.74 12.72 34.27 4.16
5377 5524 3.058160 GTCGCTTGCCCACATGCT 61.058 61.111 0.00 0.00 43.06 3.79
5547 5695 8.728833 GCAAATATTCCTGGATCTATCTTCTTG 58.271 37.037 0.00 1.89 0.00 3.02
5615 5763 3.011517 TCTTGCCCCCTCCTCTGC 61.012 66.667 0.00 0.00 0.00 4.26
5822 5975 0.687427 TCCTCTCGGTGGCATGATCA 60.687 55.000 0.00 0.00 0.00 2.92
5901 6054 0.178068 ATGCGTTCGAGGGCTGTATT 59.822 50.000 10.53 0.00 0.00 1.89
6087 6242 9.747898 ATATTGGTCACTCAACTATTAAAACCA 57.252 29.630 0.00 0.00 32.70 3.67
6123 6278 2.579873 CTGCCAATGGAGAAGGTATGG 58.420 52.381 2.05 0.00 0.00 2.74
6349 6507 0.969149 TCAAGTGTCAGATCTGCGGT 59.031 50.000 18.36 0.00 0.00 5.68
6383 6541 2.289444 GCCACAACAACTCTGCTAGGTA 60.289 50.000 0.00 0.00 0.00 3.08
6401 6565 2.203280 CAACACCAAGGGTCGCCA 60.203 61.111 0.00 0.00 31.02 5.69
6467 6655 0.454196 AACAACAACAACCCTCGCAC 59.546 50.000 0.00 0.00 0.00 5.34
6468 6656 0.453793 CAACAACAACAACCCTCGCA 59.546 50.000 0.00 0.00 0.00 5.10
6470 6658 2.525055 CAACAACAACAACAACCCTCG 58.475 47.619 0.00 0.00 0.00 4.63
6472 6660 1.066502 GGCAACAACAACAACAACCCT 60.067 47.619 0.00 0.00 0.00 4.34
6473 6661 1.364721 GGCAACAACAACAACAACCC 58.635 50.000 0.00 0.00 0.00 4.11
6474 6662 0.995728 CGGCAACAACAACAACAACC 59.004 50.000 0.00 0.00 0.00 3.77
6475 6663 1.704070 ACGGCAACAACAACAACAAC 58.296 45.000 0.00 0.00 0.00 3.32
6476 6664 2.440539 AACGGCAACAACAACAACAA 57.559 40.000 0.00 0.00 0.00 2.83
6477 6665 2.440539 AAACGGCAACAACAACAACA 57.559 40.000 0.00 0.00 0.00 3.33
6478 6666 2.723314 GCAAAACGGCAACAACAACAAC 60.723 45.455 0.00 0.00 0.00 3.32
6479 6667 1.461127 GCAAAACGGCAACAACAACAA 59.539 42.857 0.00 0.00 0.00 2.83
6480 6668 1.071605 GCAAAACGGCAACAACAACA 58.928 45.000 0.00 0.00 0.00 3.33
6609 6818 0.603569 GAGCAACTTCGACCAGAGGA 59.396 55.000 0.00 0.00 0.00 3.71
6742 6968 3.508048 GGAAAGCCCCTGGAGGAA 58.492 61.111 0.00 0.00 38.24 3.36
6865 7091 2.588439 TCGACCTCGATCTCCCGT 59.412 61.111 0.00 0.00 44.22 5.28
7009 7235 3.054948 CACCAAATCCCCTGCATTCAATT 60.055 43.478 0.00 0.00 0.00 2.32
7030 7256 1.825474 GATGGAAAGGAGGAGTCGTCA 59.175 52.381 14.42 0.00 0.00 4.35
7087 7313 0.669077 GCTACGTCGATGGATCCACT 59.331 55.000 18.99 6.48 0.00 4.00
7088 7314 0.318784 GGCTACGTCGATGGATCCAC 60.319 60.000 18.99 10.34 0.00 4.02
7245 7474 4.527944 ACATCTAGTTCTCGATCTCCACA 58.472 43.478 0.00 0.00 0.00 4.17
7278 7507 6.747414 TTCCACATGGTATACAGAGCTATT 57.253 37.500 5.01 0.00 36.34 1.73
7314 7545 1.450312 CCTCGGTAGGGTACGACGT 60.450 63.158 5.52 5.52 39.48 4.34
7461 7700 7.279615 TGGACTTGTAGATATACATTGGTTGG 58.720 38.462 0.13 0.00 0.00 3.77
7480 7729 1.780919 AGGTTTAGCCAGGTTGGACTT 59.219 47.619 0.00 0.00 40.96 3.01
7502 7751 5.363979 TTTGTTAAACATGCTACATGCGA 57.636 34.783 7.46 0.00 46.63 5.10
7535 7784 2.683362 GCTTATGGGAGGTACACTTTGC 59.317 50.000 0.00 0.00 0.00 3.68
7552 7801 0.398696 TTCCTTGCCCAACTCGCTTA 59.601 50.000 0.00 0.00 0.00 3.09
7557 7806 1.332195 AAAGCTTCCTTGCCCAACTC 58.668 50.000 0.00 0.00 0.00 3.01
7797 8096 4.051922 GTCATGCGAGTTCGAAGGAATAT 58.948 43.478 5.60 0.00 39.59 1.28
7835 8134 4.614555 TGCTCCAATGTAGTAATTTGCG 57.385 40.909 0.00 0.00 0.00 4.85
7960 8259 4.530710 ATTGCATATGCCCATGATGAAC 57.469 40.909 24.54 0.00 41.18 3.18
8018 8317 9.579768 GTGATAGATATTCATACAAGCGAATCT 57.420 33.333 0.00 0.00 33.90 2.40
8078 8377 8.907885 AGCTTGAGAAAATTCCATAATTACCTC 58.092 33.333 0.00 0.00 34.12 3.85
8215 8515 6.866010 ATGAAGCAATAAATCGATACTGCA 57.134 33.333 17.77 7.35 32.21 4.41
8261 8561 8.499967 GTTAGAGCAAGAAAAAGGTAGAAGAAG 58.500 37.037 0.00 0.00 0.00 2.85
8309 8609 9.449719 GTTATCTTACTCTTGGGAAGAATGAAA 57.550 33.333 0.00 0.00 37.02 2.69
8347 8647 8.328758 TGCTAGGGCTATAAGTTATATGCATTT 58.671 33.333 3.54 0.00 39.59 2.32
8365 8665 7.387673 ACAAAATTTGTTTAGATTTGCTAGGGC 59.612 33.333 5.41 0.00 42.22 5.19
8366 8666 8.831715 ACAAAATTTGTTTAGATTTGCTAGGG 57.168 30.769 5.41 0.00 42.22 3.53
8386 8686 5.836358 AGGCTGGGACAATAAAGTAACAAAA 59.164 36.000 0.00 0.00 38.70 2.44
8448 8748 5.190992 TGATTTCTGCATATGTCATTGGC 57.809 39.130 4.29 0.00 0.00 4.52
8479 8779 5.001232 TCTTGGTTCCAGGAATTCGTTAAG 58.999 41.667 4.80 4.79 0.00 1.85
8491 8791 2.089980 CTTCTGCCATCTTGGTTCCAG 58.910 52.381 0.00 0.00 40.46 3.86
8495 8795 1.425066 TCACCTTCTGCCATCTTGGTT 59.575 47.619 0.00 0.00 40.46 3.67
8529 8830 9.459640 CAGCTGATCACTCAATATTTTATTTGG 57.540 33.333 8.42 0.00 0.00 3.28
8573 8874 8.902806 TCCTGAAAATAATACAAGTAGCAATGG 58.097 33.333 0.00 0.00 0.00 3.16
8646 8947 5.689383 AAATGCCAACTGTAATATAGGCG 57.311 39.130 0.00 0.00 44.83 5.52
8674 8975 2.782341 AGCAAGGCTCCAAAGGATATCT 59.218 45.455 2.05 0.00 30.62 1.98
8750 9051 8.821147 TTTCTTCATTAGTAGCAAACTTACGA 57.179 30.769 0.00 0.00 39.80 3.43
8789 9090 6.299805 TCAAATCACAGTGCCTCTTACTAT 57.700 37.500 0.00 0.00 0.00 2.12
8790 9091 5.738619 TCAAATCACAGTGCCTCTTACTA 57.261 39.130 0.00 0.00 0.00 1.82
8791 9092 4.623932 TCAAATCACAGTGCCTCTTACT 57.376 40.909 0.00 0.00 0.00 2.24
8792 9093 5.689383 TTTCAAATCACAGTGCCTCTTAC 57.311 39.130 0.00 0.00 0.00 2.34
8794 9095 5.769662 TGTATTTCAAATCACAGTGCCTCTT 59.230 36.000 0.00 0.00 0.00 2.85
8795 9096 5.316167 TGTATTTCAAATCACAGTGCCTCT 58.684 37.500 0.00 0.00 0.00 3.69
8797 9098 4.082571 GCTGTATTTCAAATCACAGTGCCT 60.083 41.667 15.38 0.00 40.40 4.75
8798 9099 4.168760 GCTGTATTTCAAATCACAGTGCC 58.831 43.478 15.38 3.09 40.40 5.01
8799 9100 4.797471 TGCTGTATTTCAAATCACAGTGC 58.203 39.130 15.38 8.21 40.40 4.40
8801 9102 8.767085 CAAATTTGCTGTATTTCAAATCACAGT 58.233 29.630 5.01 1.28 40.73 3.55
8802 9103 8.225107 CCAAATTTGCTGTATTTCAAATCACAG 58.775 33.333 12.92 12.09 40.73 3.66
8829 9144 6.714810 CCTAGCAATGGCAACCAGTTATATTA 59.285 38.462 0.00 0.00 44.61 0.98
8830 9145 5.536161 CCTAGCAATGGCAACCAGTTATATT 59.464 40.000 0.00 0.00 44.61 1.28
8864 9209 7.518188 ACTATTTGGGATCGAGTGGATATTTT 58.482 34.615 0.00 0.00 34.82 1.82
8870 9215 4.837093 AAACTATTTGGGATCGAGTGGA 57.163 40.909 0.00 0.00 0.00 4.02
8888 9233 8.747538 ACTATATGGATGAGTTTACCCAAAAC 57.252 34.615 0.00 0.00 46.61 2.43
8923 9268 6.630203 TTGGATTGTAGGTACCTGTATGTT 57.370 37.500 25.33 4.20 0.00 2.71
8939 9284 7.918643 ACTTTGTTTTGTTATTGCTTGGATTG 58.081 30.769 0.00 0.00 0.00 2.67
8943 9288 7.704472 TCTGTACTTTGTTTTGTTATTGCTTGG 59.296 33.333 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.