Multiple sequence alignment - TraesCS7A01G084600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G084600 chr7A 100.000 3409 0 0 1 3409 49133445 49130037 0.000000e+00 6296.0
1 TraesCS7A01G084600 chr7A 84.514 833 121 6 1029 1854 49179736 49178905 0.000000e+00 817.0
2 TraesCS7A01G084600 chr7A 88.696 460 40 6 2961 3409 46165880 46166338 4.970000e-153 551.0
3 TraesCS7A01G084600 chr7A 88.136 472 34 6 2960 3409 663798652 663798181 2.990000e-150 542.0
4 TraesCS7A01G084600 chr7A 86.528 386 14 5 3045 3409 704417520 704417888 1.150000e-104 390.0
5 TraesCS7A01G084600 chr7D 93.124 2545 138 17 1 2527 46907430 46904905 0.000000e+00 3696.0
6 TraesCS7A01G084600 chr7D 82.033 1269 199 21 1040 2287 46944509 46943249 0.000000e+00 1053.0
7 TraesCS7A01G084600 chr7D 87.363 364 38 6 2961 3322 597043827 597044184 8.800000e-111 411.0
8 TraesCS7A01G084600 chr7D 93.252 163 9 2 2533 2694 46904740 46904579 4.400000e-59 239.0
9 TraesCS7A01G084600 chr7D 91.538 130 8 3 2816 2943 46904568 46904440 3.500000e-40 176.0
10 TraesCS7A01G084600 chr4A 92.606 1623 81 20 919 2533 660986153 660984562 0.000000e+00 2296.0
11 TraesCS7A01G084600 chr4A 82.060 1243 203 18 1040 2268 661122308 661121072 0.000000e+00 1042.0
12 TraesCS7A01G084600 chr4A 87.854 741 56 16 205 917 660986993 660986259 0.000000e+00 839.0
13 TraesCS7A01G084600 chr4A 84.420 828 119 9 1034 1854 661050695 661049871 0.000000e+00 806.0
14 TraesCS7A01G084600 chr4A 80.808 693 120 13 1585 2268 661143634 661142946 6.480000e-147 531.0
15 TraesCS7A01G084600 chr4A 87.923 414 37 6 2961 3364 563362249 563362659 3.080000e-130 475.0
16 TraesCS7A01G084600 chr4A 86.006 343 45 2 1040 1379 661143995 661143653 6.950000e-97 364.0
17 TraesCS7A01G084600 chr4A 93.137 204 11 2 4 204 660987227 660987024 2.570000e-76 296.0
18 TraesCS7A01G084600 chr4A 94.186 86 5 0 3324 3409 563362654 563362739 7.680000e-27 132.0
19 TraesCS7A01G084600 chr4B 77.203 1237 243 29 1040 2248 70999391 70998166 0.000000e+00 686.0
20 TraesCS7A01G084600 chr4D 76.789 1258 247 34 1021 2248 48121602 48120360 0.000000e+00 664.0
21 TraesCS7A01G084600 chr4D 86.580 462 47 8 2961 3409 426775705 426776164 2.360000e-136 496.0
22 TraesCS7A01G084600 chr3A 90.585 393 30 5 3018 3409 723712544 723712158 6.520000e-142 514.0
23 TraesCS7A01G084600 chr6B 86.087 460 51 8 2961 3409 36439059 36438602 1.840000e-132 483.0
24 TraesCS7A01G084600 chr6B 83.607 427 58 7 2960 3379 31744594 31744173 1.150000e-104 390.0
25 TraesCS7A01G084600 chr5B 89.920 377 24 3 2960 3322 13745989 13745613 1.110000e-129 473.0
26 TraesCS7A01G084600 chr3D 87.432 366 41 4 2961 3322 5240849 5240485 1.890000e-112 416.0
27 TraesCS7A01G084600 chr3D 92.063 63 3 2 2717 2779 341491345 341491285 1.690000e-13 87.9
28 TraesCS7A01G084600 chr3D 97.872 47 0 1 2733 2779 20204697 20204742 2.820000e-11 80.5
29 TraesCS7A01G084600 chr3D 95.556 45 2 0 2717 2761 309004348 309004392 4.720000e-09 73.1
30 TraesCS7A01G084600 chr2B 86.992 369 41 6 2960 3321 113468813 113468445 3.170000e-110 409.0
31 TraesCS7A01G084600 chr2A 82.328 464 46 12 2961 3409 392753335 392752893 1.490000e-98 370.0
32 TraesCS7A01G084600 chr5A 88.272 162 10 2 3257 3409 698069506 698069667 5.810000e-43 185.0
33 TraesCS7A01G084600 chr2D 86.842 152 13 6 3264 3409 10041701 10041551 2.720000e-36 163.0
34 TraesCS7A01G084600 chr2D 90.909 66 1 5 2718 2781 346419078 346419140 2.180000e-12 84.2
35 TraesCS7A01G084600 chr2D 97.059 34 0 1 2744 2777 349729330 349729362 4.750000e-04 56.5
36 TraesCS7A01G084600 chr6A 95.349 86 4 0 3322 3407 22992970 22993055 1.650000e-28 137.0
37 TraesCS7A01G084600 chr6A 93.651 63 3 1 2718 2780 397217882 397217821 3.620000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G084600 chr7A 49130037 49133445 3408 True 6296.000000 6296 100.000 1 3409 1 chr7A.!!$R1 3408
1 TraesCS7A01G084600 chr7A 49178905 49179736 831 True 817.000000 817 84.514 1029 1854 1 chr7A.!!$R2 825
2 TraesCS7A01G084600 chr7D 46904440 46907430 2990 True 1370.333333 3696 92.638 1 2943 3 chr7D.!!$R2 2942
3 TraesCS7A01G084600 chr7D 46943249 46944509 1260 True 1053.000000 1053 82.033 1040 2287 1 chr7D.!!$R1 1247
4 TraesCS7A01G084600 chr4A 660984562 660987227 2665 True 1143.666667 2296 91.199 4 2533 3 chr4A.!!$R3 2529
5 TraesCS7A01G084600 chr4A 661121072 661122308 1236 True 1042.000000 1042 82.060 1040 2268 1 chr4A.!!$R2 1228
6 TraesCS7A01G084600 chr4A 661049871 661050695 824 True 806.000000 806 84.420 1034 1854 1 chr4A.!!$R1 820
7 TraesCS7A01G084600 chr4A 661142946 661143995 1049 True 447.500000 531 83.407 1040 2268 2 chr4A.!!$R4 1228
8 TraesCS7A01G084600 chr4B 70998166 70999391 1225 True 686.000000 686 77.203 1040 2248 1 chr4B.!!$R1 1208
9 TraesCS7A01G084600 chr4D 48120360 48121602 1242 True 664.000000 664 76.789 1021 2248 1 chr4D.!!$R1 1227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 276 0.250081 GCTGGCCTATACTGAGCACC 60.250 60.0 3.32 0.0 0.00 5.01 F
1583 1776 0.392706 AGCTGGACGATGTTGTCACA 59.607 50.0 3.01 0.0 40.72 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1917 0.039798 GCACAGTGCACTTGATGTGG 60.040 55.0 28.02 15.33 46.27 4.17 R
2751 3151 0.035317 TCAAGAACATGCAGGAGCGT 59.965 50.0 4.84 0.00 46.23 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 80 6.049955 TCCTATACTCACCAAAAGAAGTGG 57.950 41.667 0.00 0.00 42.28 4.00
119 127 3.203716 TGGCGTGTGTTGTTATGTGTTA 58.796 40.909 0.00 0.00 0.00 2.41
156 164 3.514309 CGGGGGTCCTATTTATAGTCCAG 59.486 52.174 0.00 0.00 0.00 3.86
238 276 0.250081 GCTGGCCTATACTGAGCACC 60.250 60.000 3.32 0.00 0.00 5.01
292 332 2.358322 ACGGTGGATTGGACACTTTT 57.642 45.000 0.00 0.00 38.83 2.27
293 333 2.661718 ACGGTGGATTGGACACTTTTT 58.338 42.857 0.00 0.00 38.83 1.94
399 439 4.326826 ACCAGTGGTTGTGTAATCATCTG 58.673 43.478 9.70 0.00 27.29 2.90
433 473 2.404215 CTGAACGATATACCTTGCCGG 58.596 52.381 0.00 0.00 39.35 6.13
463 503 3.417101 AGCAAATGAACGTTACATGGGA 58.583 40.909 0.00 0.00 0.00 4.37
484 524 4.332543 GGACATTGTCTCGCATAATGTTCA 59.667 41.667 16.02 0.00 44.49 3.18
485 525 5.163764 GGACATTGTCTCGCATAATGTTCAA 60.164 40.000 16.02 0.00 44.49 2.69
502 542 5.624159 TGTTCAATGGTCTCAGAATCTTGT 58.376 37.500 0.00 0.00 0.00 3.16
523 565 9.176181 TCTTGTTGTAATTTTTATCGTCTTTGC 57.824 29.630 0.00 0.00 0.00 3.68
535 579 1.196808 CGTCTTTGCGGTGCTTTGTAT 59.803 47.619 0.00 0.00 0.00 2.29
575 622 4.162096 AGTTGTACTAAGTCAGCGACTG 57.838 45.455 11.11 0.00 42.59 3.51
627 682 5.647658 TCTGTTTTGCATCCAAATAGTCGAT 59.352 36.000 6.15 0.00 40.40 3.59
638 693 4.747108 CCAAATAGTCGATCATCCAGACAC 59.253 45.833 0.00 0.00 37.36 3.67
668 723 1.133025 GCTGCAAACTTGTGTGTGTCT 59.867 47.619 0.00 0.00 34.00 3.41
716 784 6.489675 CAGGAGTGCATATCATTAAACACAC 58.510 40.000 0.00 0.00 0.00 3.82
719 787 7.992608 AGGAGTGCATATCATTAAACACACATA 59.007 33.333 0.00 0.00 0.00 2.29
757 825 0.435008 GTGTCGCGTGTGACTGATTC 59.565 55.000 5.77 0.00 39.64 2.52
762 830 1.419374 GCGTGTGACTGATTCGAGTT 58.581 50.000 0.00 0.00 0.00 3.01
826 895 1.523095 CCGCGAATCTACTTTAGCTGC 59.477 52.381 8.23 0.00 0.00 5.25
843 912 3.365265 CCACCTTTGCCTCCACGC 61.365 66.667 0.00 0.00 0.00 5.34
861 930 6.061441 TCCACGCTTATCCAAACATGAATAT 58.939 36.000 0.00 0.00 0.00 1.28
978 1154 6.994496 TCTCAAAGCAAGCAATATATAGCACT 59.006 34.615 0.00 0.00 0.00 4.40
987 1163 7.290110 AGCAATATATAGCACTACACACTCA 57.710 36.000 0.00 0.00 0.00 3.41
1298 1476 4.338539 GTGCTCGTCACGTCGGGT 62.339 66.667 0.00 0.00 35.76 5.28
1322 1503 4.719369 GCCGCCGACAACGACTCT 62.719 66.667 0.00 0.00 42.66 3.24
1416 1609 3.820467 CCACAGCCAGAAGTATTTTGTGA 59.180 43.478 3.51 0.00 37.27 3.58
1583 1776 0.392706 AGCTGGACGATGTTGTCACA 59.607 50.000 3.01 0.00 40.72 3.58
1625 1818 2.751436 CTGGGGATTGCCACGGTG 60.751 66.667 0.00 0.00 42.06 4.94
1724 1917 1.986882 CCATCATCAAGGCTTACCCC 58.013 55.000 0.00 0.00 36.11 4.95
1855 2048 1.209019 AGCTGTGATGCTCAAGGTAGG 59.791 52.381 0.00 0.00 39.34 3.18
1876 2084 8.192110 GGTAGGTAGTAACAATTCAAGAGAGAG 58.808 40.741 0.00 0.00 0.00 3.20
1882 2090 6.995091 AGTAACAATTCAAGAGAGAGTGCTTT 59.005 34.615 0.00 0.00 0.00 3.51
1884 2092 7.992754 AACAATTCAAGAGAGAGTGCTTTAT 57.007 32.000 0.00 0.00 0.00 1.40
1936 2163 6.956202 ATTTGGAGCTCTTGATCTTAATGG 57.044 37.500 14.64 0.00 0.00 3.16
1986 2218 0.105593 TCTGGAGCGATGAGGATTGC 59.894 55.000 0.00 0.00 39.09 3.56
2121 2353 4.751028 GCCCAACTCCTTATGGATATGCTT 60.751 45.833 0.00 0.00 42.29 3.91
2175 2407 4.572985 TGAAAATGACTGGAGCAAACTG 57.427 40.909 0.00 0.00 0.00 3.16
2229 2461 2.231478 TGTGAAGAAACTAGGAGCTCGG 59.769 50.000 7.83 3.04 0.00 4.63
2288 2520 9.667107 GCTATATGCACATTAATAAAGGGAGTA 57.333 33.333 0.00 0.00 42.31 2.59
2319 2551 9.674068 TTACTATAAATGTAAGTTGCATGGACA 57.326 29.630 7.25 0.00 0.00 4.02
2330 2562 5.621193 AGTTGCATGGACAGTAAGTAGTTT 58.379 37.500 0.00 0.00 0.00 2.66
2331 2563 6.765403 AGTTGCATGGACAGTAAGTAGTTTA 58.235 36.000 0.00 0.00 0.00 2.01
2349 2581 8.053355 AGTAGTTTATAAGTGCCCAGCTTAATT 58.947 33.333 0.00 0.00 32.92 1.40
2355 2587 3.700538 AGTGCCCAGCTTAATTCATTGA 58.299 40.909 0.00 0.00 0.00 2.57
2381 2613 1.404583 GGTCCATGCAATGTTGGCTTC 60.405 52.381 0.00 0.00 44.81 3.86
2450 2682 7.523293 AAAGATGGTTTGTTGTATGTCATCA 57.477 32.000 0.00 0.00 33.92 3.07
2524 2764 3.978610 ACTGGACTCGATAAAGGTACCT 58.021 45.455 9.21 9.21 0.00 3.08
2528 2927 5.484715 TGGACTCGATAAAGGTACCTTTTG 58.515 41.667 37.89 27.83 42.93 2.44
2531 2930 3.264104 TCGATAAAGGTACCTTTTGCCG 58.736 45.455 37.89 32.96 42.93 5.69
2537 2936 6.793837 TAAAGGTACCTTTTGCCGAGTGCA 62.794 45.833 37.89 17.92 45.69 4.57
2577 2976 0.888736 TTGGATGCCCACTGTCAACG 60.889 55.000 0.00 0.00 43.41 4.10
2586 2985 2.028476 CCCACTGTCAACGTCCAAGATA 60.028 50.000 0.00 0.00 0.00 1.98
2598 2997 5.250200 ACGTCCAAGATATAGTTTGCCAAA 58.750 37.500 0.00 0.00 0.00 3.28
2631 3030 1.943968 GCACAGATGGTTTGCCGAGTA 60.944 52.381 0.00 0.00 37.67 2.59
2636 3035 3.249320 CAGATGGTTTGCCGAGTATCATG 59.751 47.826 0.00 0.00 37.67 3.07
2641 3040 1.006086 TTGCCGAGTATCATGTTGCG 58.994 50.000 0.00 0.00 33.17 4.85
2667 3067 2.685017 ATGAGTGGGAGCTCGGCA 60.685 61.111 7.83 1.45 38.28 5.69
2691 3091 1.203100 AGCTTGGAACTGGGCAAAGAT 60.203 47.619 0.00 0.00 0.00 2.40
2693 3093 2.517959 CTTGGAACTGGGCAAAGATGA 58.482 47.619 0.00 0.00 0.00 2.92
2694 3094 2.673775 TGGAACTGGGCAAAGATGAA 57.326 45.000 0.00 0.00 0.00 2.57
2695 3095 3.173953 TGGAACTGGGCAAAGATGAAT 57.826 42.857 0.00 0.00 0.00 2.57
2696 3096 3.509442 TGGAACTGGGCAAAGATGAATT 58.491 40.909 0.00 0.00 0.00 2.17
2697 3097 3.903090 TGGAACTGGGCAAAGATGAATTT 59.097 39.130 0.00 0.00 0.00 1.82
2698 3098 5.083122 TGGAACTGGGCAAAGATGAATTTA 58.917 37.500 0.00 0.00 0.00 1.40
2699 3099 5.721000 TGGAACTGGGCAAAGATGAATTTAT 59.279 36.000 0.00 0.00 0.00 1.40
2700 3100 6.213195 TGGAACTGGGCAAAGATGAATTTATT 59.787 34.615 0.00 0.00 0.00 1.40
2701 3101 7.105588 GGAACTGGGCAAAGATGAATTTATTT 58.894 34.615 0.00 0.00 0.00 1.40
2702 3102 8.257306 GGAACTGGGCAAAGATGAATTTATTTA 58.743 33.333 0.00 0.00 0.00 1.40
2703 3103 9.822185 GAACTGGGCAAAGATGAATTTATTTAT 57.178 29.630 0.00 0.00 0.00 1.40
2724 3124 9.715119 ATTTATTTTTAGCTAATTGGACTCCCT 57.285 29.630 7.08 0.00 0.00 4.20
2725 3125 8.747538 TTATTTTTAGCTAATTGGACTCCCTC 57.252 34.615 7.08 0.00 0.00 4.30
2726 3126 6.388619 TTTTTAGCTAATTGGACTCCCTCT 57.611 37.500 7.08 0.00 0.00 3.69
2727 3127 6.388619 TTTTAGCTAATTGGACTCCCTCTT 57.611 37.500 7.08 0.00 0.00 2.85
2728 3128 5.615925 TTAGCTAATTGGACTCCCTCTTC 57.384 43.478 0.86 0.00 0.00 2.87
2729 3129 3.730269 AGCTAATTGGACTCCCTCTTCT 58.270 45.455 0.00 0.00 0.00 2.85
2730 3130 4.107820 AGCTAATTGGACTCCCTCTTCTT 58.892 43.478 0.00 0.00 0.00 2.52
2731 3131 4.538089 AGCTAATTGGACTCCCTCTTCTTT 59.462 41.667 0.00 0.00 0.00 2.52
2732 3132 5.014649 AGCTAATTGGACTCCCTCTTCTTTT 59.985 40.000 0.00 0.00 0.00 2.27
2733 3133 5.712446 GCTAATTGGACTCCCTCTTCTTTTT 59.288 40.000 0.00 0.00 0.00 1.94
2734 3134 6.884836 GCTAATTGGACTCCCTCTTCTTTTTA 59.115 38.462 0.00 0.00 0.00 1.52
2735 3135 7.393515 GCTAATTGGACTCCCTCTTCTTTTTAA 59.606 37.037 0.00 0.00 0.00 1.52
2736 3136 9.467796 CTAATTGGACTCCCTCTTCTTTTTAAT 57.532 33.333 0.00 0.00 0.00 1.40
2737 3137 8.727100 AATTGGACTCCCTCTTCTTTTTAATT 57.273 30.769 0.00 0.00 0.00 1.40
2738 3138 7.524717 TTGGACTCCCTCTTCTTTTTAATTG 57.475 36.000 0.00 0.00 0.00 2.32
2739 3139 6.848069 TGGACTCCCTCTTCTTTTTAATTGA 58.152 36.000 0.00 0.00 0.00 2.57
2740 3140 7.294584 TGGACTCCCTCTTCTTTTTAATTGAA 58.705 34.615 0.00 0.00 0.00 2.69
2741 3141 7.782644 TGGACTCCCTCTTCTTTTTAATTGAAA 59.217 33.333 0.00 0.00 0.00 2.69
2742 3142 8.638873 GGACTCCCTCTTCTTTTTAATTGAAAA 58.361 33.333 7.77 7.77 35.16 2.29
2743 3143 9.684448 GACTCCCTCTTCTTTTTAATTGAAAAG 57.316 33.333 22.88 22.88 44.25 2.27
2753 3153 8.538856 TCTTTTTAATTGAAAAGACATGCAACG 58.461 29.630 25.86 6.04 45.66 4.10
2754 3154 5.820926 TTAATTGAAAAGACATGCAACGC 57.179 34.783 0.00 0.00 0.00 4.84
2755 3155 3.648339 ATTGAAAAGACATGCAACGCT 57.352 38.095 0.00 0.00 0.00 5.07
2756 3156 2.686558 TGAAAAGACATGCAACGCTC 57.313 45.000 0.00 0.00 0.00 5.03
2757 3157 1.266718 TGAAAAGACATGCAACGCTCC 59.733 47.619 0.00 0.00 0.00 4.70
2758 3158 1.537202 GAAAAGACATGCAACGCTCCT 59.463 47.619 0.00 0.00 0.00 3.69
2759 3159 0.877071 AAAGACATGCAACGCTCCTG 59.123 50.000 0.00 0.00 0.00 3.86
2760 3160 1.580845 AAGACATGCAACGCTCCTGC 61.581 55.000 0.00 0.00 40.35 4.85
2764 3164 2.281692 TGCAACGCTCCTGCATGT 60.282 55.556 0.00 0.00 44.67 3.21
2765 3165 1.898094 TGCAACGCTCCTGCATGTT 60.898 52.632 0.00 0.00 44.67 2.71
2766 3166 1.154150 GCAACGCTCCTGCATGTTC 60.154 57.895 0.00 0.00 39.69 3.18
2767 3167 1.580845 GCAACGCTCCTGCATGTTCT 61.581 55.000 0.00 0.00 39.69 3.01
2768 3168 0.877071 CAACGCTCCTGCATGTTCTT 59.123 50.000 0.00 0.00 39.64 2.52
2769 3169 0.877071 AACGCTCCTGCATGTTCTTG 59.123 50.000 0.00 0.00 39.64 3.02
2770 3170 0.035317 ACGCTCCTGCATGTTCTTGA 59.965 50.000 0.00 0.00 39.64 3.02
2771 3171 1.159285 CGCTCCTGCATGTTCTTGAA 58.841 50.000 0.00 0.00 39.64 2.69
2772 3172 1.741706 CGCTCCTGCATGTTCTTGAAT 59.258 47.619 0.00 0.00 39.64 2.57
2773 3173 2.938451 CGCTCCTGCATGTTCTTGAATA 59.062 45.455 0.00 0.00 39.64 1.75
2774 3174 3.374988 CGCTCCTGCATGTTCTTGAATAA 59.625 43.478 0.00 0.00 39.64 1.40
2775 3175 4.142622 CGCTCCTGCATGTTCTTGAATAAA 60.143 41.667 0.00 0.00 39.64 1.40
2776 3176 5.619757 CGCTCCTGCATGTTCTTGAATAAAA 60.620 40.000 0.00 0.00 39.64 1.52
2777 3177 6.158598 GCTCCTGCATGTTCTTGAATAAAAA 58.841 36.000 0.00 0.00 39.41 1.94
2816 3216 8.704849 AGTAGTGTCTTCTGATTCATATAGCT 57.295 34.615 0.00 0.00 0.00 3.32
2817 3217 8.575589 AGTAGTGTCTTCTGATTCATATAGCTG 58.424 37.037 0.00 0.00 0.00 4.24
2818 3218 7.594351 AGTGTCTTCTGATTCATATAGCTGA 57.406 36.000 0.00 0.00 0.00 4.26
2819 3219 8.192743 AGTGTCTTCTGATTCATATAGCTGAT 57.807 34.615 0.00 0.00 0.00 2.90
2820 3220 8.089597 AGTGTCTTCTGATTCATATAGCTGATG 58.910 37.037 0.00 0.00 0.00 3.07
2821 3221 6.872547 TGTCTTCTGATTCATATAGCTGATGC 59.127 38.462 0.00 0.00 40.05 3.91
2822 3222 6.872547 GTCTTCTGATTCATATAGCTGATGCA 59.127 38.462 0.00 0.00 42.74 3.96
2823 3223 7.387122 GTCTTCTGATTCATATAGCTGATGCAA 59.613 37.037 0.00 0.00 42.74 4.08
2829 3229 8.132995 TGATTCATATAGCTGATGCAAAAACAG 58.867 33.333 0.00 0.00 42.74 3.16
2839 3239 6.198650 TGATGCAAAAACAGATGACCATAG 57.801 37.500 0.00 0.00 0.00 2.23
2898 3299 2.521105 AAGCAAAGCCAAGAAAGCTG 57.479 45.000 0.00 0.00 40.49 4.24
2932 3333 0.179181 TCTTGATCGCGTACGTCCAC 60.179 55.000 17.90 7.34 41.18 4.02
2933 3334 1.461317 CTTGATCGCGTACGTCCACG 61.461 60.000 17.90 11.76 44.71 4.94
2943 3344 4.457496 CGTCCACGCCCAGCAGAT 62.457 66.667 0.00 0.00 0.00 2.90
2944 3345 2.045926 GTCCACGCCCAGCAGATT 60.046 61.111 0.00 0.00 0.00 2.40
2945 3346 2.046023 TCCACGCCCAGCAGATTG 60.046 61.111 0.00 0.00 0.00 2.67
2946 3347 3.136123 CCACGCCCAGCAGATTGG 61.136 66.667 0.00 0.00 38.00 3.16
2947 3348 2.046023 CACGCCCAGCAGATTGGA 60.046 61.111 0.00 0.00 40.87 3.53
2948 3349 1.452651 CACGCCCAGCAGATTGGAT 60.453 57.895 0.00 0.00 40.87 3.41
2949 3350 1.153086 ACGCCCAGCAGATTGGATC 60.153 57.895 0.00 0.00 40.87 3.36
2950 3351 1.895707 CGCCCAGCAGATTGGATCC 60.896 63.158 4.20 4.20 40.87 3.36
2951 3352 1.895707 GCCCAGCAGATTGGATCCG 60.896 63.158 7.39 0.00 40.87 4.18
2952 3353 1.832219 CCCAGCAGATTGGATCCGA 59.168 57.895 3.49 3.49 40.87 4.55
2953 3354 0.399454 CCCAGCAGATTGGATCCGAT 59.601 55.000 14.87 14.87 40.87 4.18
2954 3355 1.202855 CCCAGCAGATTGGATCCGATT 60.203 52.381 16.05 3.67 40.87 3.34
2955 3356 1.878088 CCAGCAGATTGGATCCGATTG 59.122 52.381 16.05 15.37 40.87 2.67
2956 3357 1.878088 CAGCAGATTGGATCCGATTGG 59.122 52.381 16.05 11.82 0.00 3.16
2967 3368 1.100510 TCCGATTGGAGTCACTACCG 58.899 55.000 0.00 0.00 40.17 4.02
2968 3369 0.102481 CCGATTGGAGTCACTACCGG 59.898 60.000 0.00 0.00 37.49 5.28
2969 3370 1.100510 CGATTGGAGTCACTACCGGA 58.899 55.000 9.46 0.00 0.00 5.14
2970 3371 1.202268 CGATTGGAGTCACTACCGGAC 60.202 57.143 9.46 0.00 35.50 4.79
2974 3375 3.588336 AGTCACTACCGGACTCGC 58.412 61.111 9.46 0.00 41.63 5.03
2975 3376 2.099831 GTCACTACCGGACTCGCG 59.900 66.667 9.46 0.00 34.56 5.87
2976 3377 3.129502 TCACTACCGGACTCGCGG 61.130 66.667 9.46 0.00 34.56 6.46
2977 3378 3.437795 CACTACCGGACTCGCGGT 61.438 66.667 9.46 9.75 41.78 5.68
2978 3379 3.130160 ACTACCGGACTCGCGGTC 61.130 66.667 9.46 16.40 43.79 4.79
2979 3380 2.823147 CTACCGGACTCGCGGTCT 60.823 66.667 21.54 9.40 43.97 3.85
2980 3381 1.522355 CTACCGGACTCGCGGTCTA 60.522 63.158 21.54 9.91 43.97 2.59
2981 3382 0.883814 CTACCGGACTCGCGGTCTAT 60.884 60.000 21.54 12.76 43.97 1.98
2982 3383 1.162181 TACCGGACTCGCGGTCTATG 61.162 60.000 21.54 14.55 43.97 2.23
2983 3384 2.353607 CGGACTCGCGGTCTATGC 60.354 66.667 21.54 8.79 43.97 3.14
2984 3385 2.027751 GGACTCGCGGTCTATGCC 59.972 66.667 21.54 7.03 43.97 4.40
2985 3386 2.491022 GGACTCGCGGTCTATGCCT 61.491 63.158 21.54 0.00 43.97 4.75
2986 3387 1.170919 GGACTCGCGGTCTATGCCTA 61.171 60.000 21.54 0.00 43.97 3.93
2987 3388 0.040246 GACTCGCGGTCTATGCCTAC 60.040 60.000 17.12 0.00 41.46 3.18
2988 3389 1.082038 CTCGCGGTCTATGCCTACG 60.082 63.158 6.13 0.00 0.00 3.51
2989 3390 2.050351 CGCGGTCTATGCCTACGG 60.050 66.667 0.00 0.00 0.00 4.02
3006 3407 2.441532 GCCATGGGCTGTCAGCAT 60.442 61.111 25.68 9.40 46.69 3.79
3007 3408 1.152902 GCCATGGGCTGTCAGCATA 60.153 57.895 25.68 14.17 46.69 3.14
3008 3409 1.170919 GCCATGGGCTGTCAGCATAG 61.171 60.000 25.68 12.06 46.69 2.23
3009 3410 0.536687 CCATGGGCTGTCAGCATAGG 60.537 60.000 25.68 16.74 44.75 2.57
3010 3411 0.536687 CATGGGCTGTCAGCATAGGG 60.537 60.000 25.68 7.64 44.75 3.53
3011 3412 1.713005 ATGGGCTGTCAGCATAGGGG 61.713 60.000 25.68 0.00 44.75 4.79
3012 3413 2.203266 GGCTGTCAGCATAGGGGC 60.203 66.667 25.68 3.25 44.75 5.80
3013 3414 2.750657 GGCTGTCAGCATAGGGGCT 61.751 63.158 25.68 0.00 44.75 5.19
3019 3420 3.550974 AGCATAGGGGCTGTACCG 58.449 61.111 0.00 0.00 43.89 4.02
3020 3421 1.382695 AGCATAGGGGCTGTACCGT 60.383 57.895 0.00 0.00 43.89 4.83
3021 3422 1.069258 GCATAGGGGCTGTACCGTC 59.931 63.158 0.00 0.00 40.62 4.79
3022 3423 1.362717 CATAGGGGCTGTACCGTCG 59.637 63.158 0.00 0.00 40.62 5.12
3023 3424 1.831286 ATAGGGGCTGTACCGTCGG 60.831 63.158 10.48 10.48 40.62 4.79
3026 3427 4.157120 GGGCTGTACCGTCGGCAT 62.157 66.667 12.28 0.00 41.03 4.40
3027 3428 2.788640 GGGCTGTACCGTCGGCATA 61.789 63.158 12.28 0.00 41.03 3.14
3028 3429 1.299926 GGCTGTACCGTCGGCATAG 60.300 63.158 12.28 7.62 41.03 2.23
3029 3430 1.731433 GGCTGTACCGTCGGCATAGA 61.731 60.000 12.28 0.00 41.03 1.98
3030 3431 0.314302 GCTGTACCGTCGGCATAGAT 59.686 55.000 12.28 0.00 39.28 1.98
3031 3432 1.666311 GCTGTACCGTCGGCATAGATC 60.666 57.143 12.28 0.00 39.28 2.75
3032 3433 1.880675 CTGTACCGTCGGCATAGATCT 59.119 52.381 12.28 0.00 0.00 2.75
3033 3434 3.072211 CTGTACCGTCGGCATAGATCTA 58.928 50.000 12.28 4.57 0.00 1.98
3034 3435 3.682696 TGTACCGTCGGCATAGATCTAT 58.317 45.455 12.28 9.57 0.00 1.98
3035 3436 3.439129 TGTACCGTCGGCATAGATCTATG 59.561 47.826 30.57 30.57 44.28 2.23
3063 3464 3.524606 CCGTCGGCATAGACCCGT 61.525 66.667 0.00 0.00 45.71 5.28
3064 3465 2.025727 CGTCGGCATAGACCCGTC 59.974 66.667 0.00 0.00 45.71 4.79
3065 3466 2.025727 GTCGGCATAGACCCGTCG 59.974 66.667 0.00 0.00 45.71 5.12
3066 3467 3.214123 TCGGCATAGACCCGTCGG 61.214 66.667 3.60 3.60 45.71 4.79
3067 3468 4.944372 CGGCATAGACCCGTCGGC 62.944 72.222 5.50 0.00 40.84 5.54
3068 3469 4.944372 GGCATAGACCCGTCGGCG 62.944 72.222 0.29 0.29 37.95 6.46
3069 3470 4.203076 GCATAGACCCGTCGGCGT 62.203 66.667 9.28 5.34 36.15 5.68
3070 3471 2.837883 GCATAGACCCGTCGGCGTA 61.838 63.158 9.28 0.00 36.15 4.42
3071 3472 1.281960 CATAGACCCGTCGGCGTAG 59.718 63.158 9.28 1.04 36.15 3.51
3072 3473 1.146930 ATAGACCCGTCGGCGTAGA 59.853 57.895 9.28 0.00 36.15 2.59
3073 3474 0.250640 ATAGACCCGTCGGCGTAGAT 60.251 55.000 9.28 0.00 36.15 1.98
3074 3475 0.392706 TAGACCCGTCGGCGTAGATA 59.607 55.000 9.28 0.00 36.15 1.98
3075 3476 0.250640 AGACCCGTCGGCGTAGATAT 60.251 55.000 9.28 0.00 36.15 1.63
3076 3477 0.167689 GACCCGTCGGCGTAGATATC 59.832 60.000 9.28 0.00 36.15 1.63
3077 3478 1.134075 CCCGTCGGCGTAGATATCG 59.866 63.158 9.28 2.11 36.15 2.92
3078 3479 1.572085 CCCGTCGGCGTAGATATCGT 61.572 60.000 9.28 0.00 36.15 3.73
3079 3480 0.179230 CCGTCGGCGTAGATATCGTC 60.179 60.000 9.28 0.00 36.15 4.20
3080 3481 0.509929 CGTCGGCGTAGATATCGTCA 59.490 55.000 6.85 0.00 32.96 4.35
3081 3482 1.462051 CGTCGGCGTAGATATCGTCAG 60.462 57.143 6.85 0.00 32.96 3.51
3082 3483 0.516001 TCGGCGTAGATATCGTCAGC 59.484 55.000 6.85 2.37 32.96 4.26
3083 3484 0.789753 CGGCGTAGATATCGTCAGCG 60.790 60.000 0.00 0.76 39.92 5.18
3084 3485 0.237761 GGCGTAGATATCGTCAGCGT 59.762 55.000 0.00 0.00 39.49 5.07
3085 3486 1.462283 GGCGTAGATATCGTCAGCGTA 59.538 52.381 0.00 0.00 39.49 4.42
3086 3487 2.474196 GGCGTAGATATCGTCAGCGTAG 60.474 54.545 0.00 0.00 39.49 3.51
3087 3488 2.157279 GCGTAGATATCGTCAGCGTAGT 59.843 50.000 0.00 0.00 39.49 2.73
3088 3489 3.721500 GCGTAGATATCGTCAGCGTAGTC 60.722 52.174 0.00 0.00 39.49 2.59
3089 3490 3.674281 CGTAGATATCGTCAGCGTAGTCT 59.326 47.826 0.00 0.00 39.49 3.24
3090 3491 4.150274 CGTAGATATCGTCAGCGTAGTCTT 59.850 45.833 0.00 0.00 39.49 3.01
3091 3492 4.475763 AGATATCGTCAGCGTAGTCTTG 57.524 45.455 0.00 0.00 39.49 3.02
3092 3493 3.878103 AGATATCGTCAGCGTAGTCTTGT 59.122 43.478 0.00 0.00 39.49 3.16
3093 3494 2.546195 ATCGTCAGCGTAGTCTTGTC 57.454 50.000 0.00 0.00 39.49 3.18
3094 3495 1.232119 TCGTCAGCGTAGTCTTGTCA 58.768 50.000 0.00 0.00 39.49 3.58
3095 3496 1.197036 TCGTCAGCGTAGTCTTGTCAG 59.803 52.381 0.00 0.00 39.49 3.51
3096 3497 1.197036 CGTCAGCGTAGTCTTGTCAGA 59.803 52.381 0.00 0.00 0.00 3.27
3097 3498 5.192844 TCGTCAGCGTAGTCTTGTCAGAC 62.193 52.174 0.00 0.00 43.32 3.51
3103 3504 4.554163 GTCTTGTCAGACCGTCGG 57.446 61.111 10.48 10.48 43.50 4.79
3104 3505 1.733399 GTCTTGTCAGACCGTCGGC 60.733 63.158 12.28 4.24 43.50 5.54
3105 3506 2.197605 TCTTGTCAGACCGTCGGCA 61.198 57.895 12.28 0.00 0.00 5.69
3106 3507 1.079819 CTTGTCAGACCGTCGGCAT 60.080 57.895 12.28 0.00 0.00 4.40
3107 3508 0.172578 CTTGTCAGACCGTCGGCATA 59.827 55.000 12.28 0.00 0.00 3.14
3108 3509 0.172578 TTGTCAGACCGTCGGCATAG 59.827 55.000 12.28 0.00 0.00 2.23
3109 3510 0.963856 TGTCAGACCGTCGGCATAGT 60.964 55.000 12.28 0.00 0.00 2.12
3110 3511 1.019673 GTCAGACCGTCGGCATAGTA 58.980 55.000 12.28 0.00 0.00 1.82
3111 3512 1.607628 GTCAGACCGTCGGCATAGTAT 59.392 52.381 12.28 0.00 0.00 2.12
3112 3513 2.810274 GTCAGACCGTCGGCATAGTATA 59.190 50.000 12.28 0.00 0.00 1.47
3113 3514 3.072211 TCAGACCGTCGGCATAGTATAG 58.928 50.000 12.28 0.00 0.00 1.31
3114 3515 1.811359 AGACCGTCGGCATAGTATAGC 59.189 52.381 12.28 0.00 0.00 2.97
3120 3521 3.715854 GGCATAGTATAGCCGTCGG 57.284 57.895 6.99 6.99 41.70 4.79
3176 3577 2.601562 GGCATAGTTTAGCCGTCGG 58.398 57.895 6.99 6.99 41.70 4.79
3187 3588 2.943653 CCGTCGGCAGTGTTTTCC 59.056 61.111 0.00 0.00 0.00 3.13
3188 3589 2.549282 CGTCGGCAGTGTTTTCCG 59.451 61.111 0.89 0.89 44.16 4.30
3189 3590 2.241880 CGTCGGCAGTGTTTTCCGT 61.242 57.895 6.78 0.00 43.35 4.69
3190 3591 1.568025 GTCGGCAGTGTTTTCCGTC 59.432 57.895 6.78 0.00 43.35 4.79
3191 3592 0.878961 GTCGGCAGTGTTTTCCGTCT 60.879 55.000 6.78 0.00 43.35 4.18
3192 3593 0.878523 TCGGCAGTGTTTTCCGTCTG 60.879 55.000 6.78 0.00 43.35 3.51
3193 3594 0.878523 CGGCAGTGTTTTCCGTCTGA 60.879 55.000 0.00 0.00 38.47 3.27
3194 3595 0.586802 GGCAGTGTTTTCCGTCTGAC 59.413 55.000 0.00 0.00 0.00 3.51
3195 3596 0.232303 GCAGTGTTTTCCGTCTGACG 59.768 55.000 22.49 22.49 42.11 4.35
3215 3616 4.595538 AACGGACGGCGCTGTCAA 62.596 61.111 41.25 0.00 40.72 3.18
3216 3617 4.595538 ACGGACGGCGCTGTCAAA 62.596 61.111 41.25 0.00 40.72 2.69
3217 3618 3.342627 CGGACGGCGCTGTCAAAA 61.343 61.111 41.25 0.00 40.72 2.44
3218 3619 2.556287 GGACGGCGCTGTCAAAAG 59.444 61.111 41.25 12.18 40.72 2.27
3219 3620 2.127232 GACGGCGCTGTCAAAAGC 60.127 61.111 37.93 15.54 38.75 3.51
3225 3626 4.522460 GCTGTCAAAAGCGCTGAC 57.478 55.556 12.58 16.36 42.94 3.51
3226 3627 1.439365 GCTGTCAAAAGCGCTGACG 60.439 57.895 12.58 12.42 45.10 4.35
3227 3628 1.831389 GCTGTCAAAAGCGCTGACGA 61.831 55.000 12.58 4.46 45.10 4.20
3228 3629 0.581529 CTGTCAAAAGCGCTGACGAA 59.418 50.000 12.58 0.00 45.10 3.85
3229 3630 1.195448 CTGTCAAAAGCGCTGACGAAT 59.805 47.619 12.58 0.00 45.10 3.34
3230 3631 1.194547 TGTCAAAAGCGCTGACGAATC 59.805 47.619 12.58 0.00 45.10 2.52
3231 3632 0.438445 TCAAAAGCGCTGACGAATCG 59.562 50.000 12.58 0.00 43.93 3.34
3232 3633 0.163788 CAAAAGCGCTGACGAATCGT 59.836 50.000 12.58 8.47 45.10 3.73
3233 3634 0.163788 AAAAGCGCTGACGAATCGTG 59.836 50.000 14.87 0.00 41.37 4.35
3234 3635 2.227968 AAAGCGCTGACGAATCGTGC 62.228 55.000 14.87 10.72 41.37 5.34
3235 3636 3.478394 GCGCTGACGAATCGTGCA 61.478 61.111 14.87 10.17 41.37 4.57
3236 3637 3.010585 GCGCTGACGAATCGTGCAA 62.011 57.895 14.87 0.00 41.37 4.08
3237 3638 1.225475 CGCTGACGAATCGTGCAAC 60.225 57.895 14.87 5.86 41.37 4.17
3257 3658 1.154035 GCACGTGGCAAAGGTATGC 60.154 57.895 18.88 0.00 45.67 3.14
3263 3664 3.098555 GCAAAGGTATGCCGACGG 58.901 61.111 10.29 10.29 40.49 4.79
3292 3693 4.697756 ACGTGGCATCCCGTGGTG 62.698 66.667 0.51 0.00 35.69 4.17
3294 3695 4.722700 GTGGCATCCCGTGGTGCT 62.723 66.667 2.43 0.00 41.04 4.40
3295 3696 4.408821 TGGCATCCCGTGGTGCTC 62.409 66.667 2.43 0.00 41.04 4.26
3297 3698 4.101448 GCATCCCGTGGTGCTCCT 62.101 66.667 6.34 0.00 38.30 3.69
3298 3699 2.124983 CATCCCGTGGTGCTCCTG 60.125 66.667 6.34 0.00 34.23 3.86
3299 3700 3.402681 ATCCCGTGGTGCTCCTGG 61.403 66.667 6.34 7.91 34.23 4.45
3300 3701 4.954118 TCCCGTGGTGCTCCTGGT 62.954 66.667 6.34 0.00 34.23 4.00
3301 3702 4.704833 CCCGTGGTGCTCCTGGTG 62.705 72.222 6.34 0.00 34.23 4.17
3302 3703 4.704833 CCGTGGTGCTCCTGGTGG 62.705 72.222 6.34 0.00 34.23 4.61
3304 3705 4.269523 GTGGTGCTCCTGGTGGCA 62.270 66.667 6.34 11.61 36.01 4.92
3305 3706 3.957586 TGGTGCTCCTGGTGGCAG 61.958 66.667 14.89 0.00 39.22 4.85
3306 3707 4.729918 GGTGCTCCTGGTGGCAGG 62.730 72.222 14.89 0.00 43.59 4.85
3307 3708 4.729918 GTGCTCCTGGTGGCAGGG 62.730 72.222 14.89 0.00 42.50 4.45
3310 3711 2.688666 CTCCTGGTGGCAGGGCTA 60.689 66.667 0.00 0.00 42.50 3.93
3311 3712 2.042762 TCCTGGTGGCAGGGCTAT 59.957 61.111 0.00 0.00 42.50 2.97
3312 3713 2.194056 CCTGGTGGCAGGGCTATG 59.806 66.667 0.00 0.00 38.66 2.23
3313 3714 2.517875 CTGGTGGCAGGGCTATGC 60.518 66.667 6.68 6.68 45.74 3.14
3331 3732 3.521995 CCTACGGCAGGCATAGATG 57.478 57.895 0.00 0.00 37.70 2.90
3332 3733 0.036952 CCTACGGCAGGCATAGATGG 60.037 60.000 0.00 0.00 37.70 3.51
3333 3734 0.969149 CTACGGCAGGCATAGATGGA 59.031 55.000 0.00 0.00 0.00 3.41
3334 3735 1.552337 CTACGGCAGGCATAGATGGAT 59.448 52.381 0.00 0.00 0.00 3.41
3335 3736 0.322975 ACGGCAGGCATAGATGGATC 59.677 55.000 0.00 0.00 0.00 3.36
3336 3737 0.612229 CGGCAGGCATAGATGGATCT 59.388 55.000 0.00 0.00 40.86 2.75
3337 3738 1.827344 CGGCAGGCATAGATGGATCTA 59.173 52.381 0.00 0.00 43.00 1.98
3346 3747 2.847327 AGATGGATCTATGCCAACGG 57.153 50.000 0.00 0.00 39.21 4.44
3347 3748 1.271054 AGATGGATCTATGCCAACGGC 60.271 52.381 0.00 0.00 41.72 5.68
3348 3749 3.618126 AGATGGATCTATGCCAACGGCT 61.618 50.000 6.56 0.00 41.83 5.52
3349 3750 5.085107 AGATGGATCTATGCCAACGGCTT 62.085 47.826 6.56 2.47 41.83 4.35
3350 3751 6.513130 AGATGGATCTATGCCAACGGCTTT 62.513 45.833 6.56 0.00 41.83 3.51
3369 3770 4.663444 CCGTAGGCATAGCTCTGC 57.337 61.111 15.34 15.34 46.14 4.26
3375 3776 3.403277 GCATAGCTCTGCCACGTG 58.597 61.111 12.87 9.08 36.10 4.49
3376 3777 1.448540 GCATAGCTCTGCCACGTGT 60.449 57.895 15.65 0.00 36.10 4.49
3377 3778 1.424493 GCATAGCTCTGCCACGTGTC 61.424 60.000 15.65 0.98 36.10 3.67
3378 3779 0.108662 CATAGCTCTGCCACGTGTCA 60.109 55.000 15.65 7.02 0.00 3.58
3379 3780 0.826715 ATAGCTCTGCCACGTGTCAT 59.173 50.000 15.65 0.00 0.00 3.06
3380 3781 0.608130 TAGCTCTGCCACGTGTCATT 59.392 50.000 15.65 0.00 0.00 2.57
3381 3782 0.671781 AGCTCTGCCACGTGTCATTC 60.672 55.000 15.65 0.00 0.00 2.67
3382 3783 1.639298 GCTCTGCCACGTGTCATTCC 61.639 60.000 15.65 0.00 0.00 3.01
3383 3784 1.003839 TCTGCCACGTGTCATTCCC 60.004 57.895 15.65 0.00 0.00 3.97
3384 3785 1.003355 CTGCCACGTGTCATTCCCT 60.003 57.895 15.65 0.00 0.00 4.20
3385 3786 0.249120 CTGCCACGTGTCATTCCCTA 59.751 55.000 15.65 0.00 0.00 3.53
3386 3787 0.249120 TGCCACGTGTCATTCCCTAG 59.751 55.000 15.65 0.00 0.00 3.02
3387 3788 0.249398 GCCACGTGTCATTCCCTAGT 59.751 55.000 15.65 0.00 0.00 2.57
3388 3789 1.338769 GCCACGTGTCATTCCCTAGTT 60.339 52.381 15.65 0.00 0.00 2.24
3389 3790 2.618053 CCACGTGTCATTCCCTAGTTC 58.382 52.381 15.65 0.00 0.00 3.01
3390 3791 2.618053 CACGTGTCATTCCCTAGTTCC 58.382 52.381 7.58 0.00 0.00 3.62
3391 3792 2.233922 CACGTGTCATTCCCTAGTTCCT 59.766 50.000 7.58 0.00 0.00 3.36
3392 3793 2.496470 ACGTGTCATTCCCTAGTTCCTC 59.504 50.000 0.00 0.00 0.00 3.71
3393 3794 2.159085 CGTGTCATTCCCTAGTTCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
3394 3795 3.108376 GTGTCATTCCCTAGTTCCTCCT 58.892 50.000 0.00 0.00 0.00 3.69
3395 3796 3.107601 TGTCATTCCCTAGTTCCTCCTG 58.892 50.000 0.00 0.00 0.00 3.86
3396 3797 2.436173 GTCATTCCCTAGTTCCTCCTGG 59.564 54.545 0.00 0.00 0.00 4.45
3397 3798 1.141858 CATTCCCTAGTTCCTCCTGGC 59.858 57.143 0.00 0.00 0.00 4.85
3398 3799 0.976073 TTCCCTAGTTCCTCCTGGCG 60.976 60.000 0.00 0.00 0.00 5.69
3399 3800 2.435693 CCCTAGTTCCTCCTGGCGG 61.436 68.421 0.00 0.00 0.00 6.13
3400 3801 2.501610 CTAGTTCCTCCTGGCGGC 59.498 66.667 0.00 0.00 0.00 6.53
3401 3802 2.284331 TAGTTCCTCCTGGCGGCA 60.284 61.111 12.58 12.58 0.00 5.69
3402 3803 2.303549 CTAGTTCCTCCTGGCGGCAG 62.304 65.000 30.63 30.63 0.00 4.85
3403 3804 4.785453 GTTCCTCCTGGCGGCAGG 62.785 72.222 43.64 43.64 43.59 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 6.982724 CGGCATGCATATTCTTCTATCAGATA 59.017 38.462 21.36 0.00 0.00 1.98
74 80 8.730680 CCATGGATTTATTACTGCCACTTATAC 58.269 37.037 5.56 0.00 0.00 1.47
214 252 0.104855 TCAGTATAGGCCAGCTTGCG 59.895 55.000 5.01 0.00 0.00 4.85
238 276 1.348538 TTAATGCGCCACTCACGTCG 61.349 55.000 4.18 0.00 0.00 5.12
380 420 4.021456 TCGACAGATGATTACACAACCACT 60.021 41.667 0.00 0.00 0.00 4.00
427 467 2.747460 GCTCACATCTGCCGGCAA 60.747 61.111 32.09 21.23 0.00 4.52
433 473 2.095567 ACGTTCATTTGCTCACATCTGC 60.096 45.455 0.00 0.00 0.00 4.26
463 503 5.878332 TTGAACATTATGCGAGACAATGT 57.122 34.783 0.00 0.00 43.01 2.71
484 524 8.641498 AATTACAACAAGATTCTGAGACCATT 57.359 30.769 0.00 0.00 0.00 3.16
485 525 8.641498 AAATTACAACAAGATTCTGAGACCAT 57.359 30.769 0.00 0.00 0.00 3.55
502 542 6.579292 CACCGCAAAGACGATAAAAATTACAA 59.421 34.615 0.00 0.00 34.06 2.41
516 558 2.989422 ATACAAAGCACCGCAAAGAC 57.011 45.000 0.00 0.00 0.00 3.01
523 565 3.971150 TCACCAAAAATACAAAGCACCG 58.029 40.909 0.00 0.00 0.00 4.94
575 622 7.792032 TGATATTCCCTCCGATCCATATTAAC 58.208 38.462 0.00 0.00 0.00 2.01
638 693 3.313526 ACAAGTTTGCAGCACTACAGAAG 59.686 43.478 0.00 0.00 0.00 2.85
692 753 6.093909 TGTGTGTTTAATGATATGCACTCCTG 59.906 38.462 0.00 0.00 0.00 3.86
719 787 7.060748 CGCGACACACGAGAGAATAAAATATAT 59.939 37.037 0.00 0.00 44.01 0.86
731 799 2.051256 ACACGCGACACACGAGAG 60.051 61.111 15.93 0.00 44.01 3.20
757 825 9.908152 TGAATATGTAACTGTATATGGAACTCG 57.092 33.333 0.00 0.00 0.00 4.18
787 855 2.211806 GGCACGCGTGGGTATATAAAA 58.788 47.619 37.47 0.00 0.00 1.52
811 879 4.576330 AAGGTGGCAGCTAAAGTAGATT 57.424 40.909 20.91 0.00 0.00 2.40
814 883 2.162408 GCAAAGGTGGCAGCTAAAGTAG 59.838 50.000 20.91 7.50 0.00 2.57
826 895 3.365265 GCGTGGAGGCAAAGGTGG 61.365 66.667 0.00 0.00 0.00 4.61
910 979 6.844696 AATGTTGATAGTACATTGGTAGCG 57.155 37.500 0.00 0.00 42.82 4.26
978 1154 8.343366 GTTCTATACTTCGATGATGAGTGTGTA 58.657 37.037 5.16 0.00 0.00 2.90
987 1163 7.772166 TGTGTTCAGTTCTATACTTCGATGAT 58.228 34.615 5.16 0.00 33.85 2.45
992 1168 7.360101 CCCTTTTGTGTTCAGTTCTATACTTCG 60.360 40.741 0.00 0.00 33.85 3.79
1298 1476 4.287781 TTGTCGGCGGCGAAGACA 62.288 61.111 36.31 26.48 42.36 3.41
1322 1503 0.755698 GGTAGATCGCCTCAGACCCA 60.756 60.000 2.63 0.00 0.00 4.51
1625 1818 2.182842 GTCATGGCACTCCCGCATC 61.183 63.158 0.00 0.00 35.87 3.91
1724 1917 0.039798 GCACAGTGCACTTGATGTGG 60.040 55.000 28.02 15.33 46.27 4.17
1785 1978 1.404391 ACCTGCGACATAGGTAACGAG 59.596 52.381 0.00 0.00 46.42 4.18
1855 2048 7.093992 AGCACTCTCTCTTGAATTGTTACTAC 58.906 38.462 0.00 0.00 0.00 2.73
1920 2128 5.314923 TGCAAACCATTAAGATCAAGAGC 57.685 39.130 0.00 0.00 0.00 4.09
1921 2129 9.459640 CAATATGCAAACCATTAAGATCAAGAG 57.540 33.333 0.00 0.00 35.34 2.85
1986 2218 2.349886 GCACTGAGCTAGGATTTTCACG 59.650 50.000 0.00 0.00 41.15 4.35
2121 2353 4.016444 GCCCTTTTGAGTTCACCATCATA 58.984 43.478 0.00 0.00 0.00 2.15
2175 2407 1.534163 GTGAACCCCGCTTTAGTGAAC 59.466 52.381 0.00 0.00 0.00 3.18
2229 2461 4.471904 TGGATAGACCTCAATGACACAC 57.528 45.455 0.00 0.00 39.86 3.82
2268 2500 6.321821 AGGTACTCCCTTTATTAATGTGCA 57.678 37.500 0.00 0.00 42.73 4.57
2297 2529 9.674068 TTACTGTCCATGCAACTTACATTTATA 57.326 29.630 0.00 0.00 0.00 0.98
2319 2551 6.156429 AGCTGGGCACTTATAAACTACTTACT 59.844 38.462 0.00 0.00 0.00 2.24
2330 2562 7.059788 TCAATGAATTAAGCTGGGCACTTATA 58.940 34.615 0.00 0.00 30.07 0.98
2331 2563 5.893255 TCAATGAATTAAGCTGGGCACTTAT 59.107 36.000 0.00 0.00 30.07 1.73
2349 2581 6.098552 ACATTGCATGGACCATAAATCAATGA 59.901 34.615 31.47 11.14 40.90 2.57
2355 2587 4.683942 GCCAACATTGCATGGACCATAAAT 60.684 41.667 6.67 7.63 39.12 1.40
2381 2613 4.007659 ACCAAGTGCTTTATTACTTCCCG 58.992 43.478 0.00 0.00 35.08 5.14
2468 2700 9.546428 AAAGCTGCAAGTAACAAGATAATTTTT 57.454 25.926 1.02 0.00 35.30 1.94
2469 2701 9.546428 AAAAGCTGCAAGTAACAAGATAATTTT 57.454 25.926 1.02 0.00 35.30 1.82
2531 2930 2.508887 CTGCCGAGAGCTGCACTC 60.509 66.667 15.83 15.83 46.66 3.51
2598 2997 3.565482 CCATCTGTGCACAACTTACAAGT 59.435 43.478 21.98 0.00 42.04 3.16
2612 3011 2.093306 TACTCGGCAAACCATCTGTG 57.907 50.000 0.00 0.00 34.57 3.66
2667 3067 1.529244 GCCCAGTTCCAAGCTGTGT 60.529 57.895 0.00 0.00 32.41 3.72
2698 3098 9.715119 AGGGAGTCCAATTAGCTAAAAATAAAT 57.285 29.630 10.85 0.00 34.83 1.40
2699 3099 9.185680 GAGGGAGTCCAATTAGCTAAAAATAAA 57.814 33.333 10.85 0.00 34.83 1.40
2700 3100 8.557450 AGAGGGAGTCCAATTAGCTAAAAATAA 58.443 33.333 10.85 0.00 34.83 1.40
2701 3101 8.102484 AGAGGGAGTCCAATTAGCTAAAAATA 57.898 34.615 10.85 0.00 34.83 1.40
2702 3102 6.974795 AGAGGGAGTCCAATTAGCTAAAAAT 58.025 36.000 10.85 0.00 34.83 1.82
2703 3103 6.388619 AGAGGGAGTCCAATTAGCTAAAAA 57.611 37.500 10.85 0.00 34.83 1.94
2704 3104 6.215636 AGAAGAGGGAGTCCAATTAGCTAAAA 59.784 38.462 10.85 0.00 34.83 1.52
2705 3105 5.726793 AGAAGAGGGAGTCCAATTAGCTAAA 59.273 40.000 10.85 0.00 34.83 1.85
2706 3106 5.281314 AGAAGAGGGAGTCCAATTAGCTAA 58.719 41.667 12.30 8.99 34.83 3.09
2707 3107 4.884961 AGAAGAGGGAGTCCAATTAGCTA 58.115 43.478 12.30 0.00 34.83 3.32
2708 3108 3.730269 AGAAGAGGGAGTCCAATTAGCT 58.270 45.455 12.30 0.00 34.83 3.32
2709 3109 4.495690 AAGAAGAGGGAGTCCAATTAGC 57.504 45.455 12.30 0.00 34.83 3.09
2710 3110 8.863872 TTAAAAAGAAGAGGGAGTCCAATTAG 57.136 34.615 12.30 0.00 34.83 1.73
2711 3111 9.822727 AATTAAAAAGAAGAGGGAGTCCAATTA 57.177 29.630 12.30 0.00 34.83 1.40
2712 3112 8.588472 CAATTAAAAAGAAGAGGGAGTCCAATT 58.412 33.333 12.30 1.72 34.83 2.32
2713 3113 7.950124 TCAATTAAAAAGAAGAGGGAGTCCAAT 59.050 33.333 12.30 0.00 34.83 3.16
2714 3114 7.294584 TCAATTAAAAAGAAGAGGGAGTCCAA 58.705 34.615 12.30 0.00 34.83 3.53
2715 3115 6.848069 TCAATTAAAAAGAAGAGGGAGTCCA 58.152 36.000 12.30 0.00 34.83 4.02
2716 3116 7.761038 TTCAATTAAAAAGAAGAGGGAGTCC 57.239 36.000 0.00 0.00 0.00 3.85
2717 3117 9.684448 CTTTTCAATTAAAAAGAAGAGGGAGTC 57.316 33.333 7.94 0.00 45.12 3.36
2718 3118 9.421399 TCTTTTCAATTAAAAAGAAGAGGGAGT 57.579 29.630 13.15 0.00 46.77 3.85
2728 3128 7.318674 GCGTTGCATGTCTTTTCAATTAAAAAG 59.681 33.333 7.41 7.41 44.16 2.27
2729 3129 7.010923 AGCGTTGCATGTCTTTTCAATTAAAAA 59.989 29.630 0.00 0.00 36.64 1.94
2730 3130 6.478344 AGCGTTGCATGTCTTTTCAATTAAAA 59.522 30.769 0.00 0.00 35.74 1.52
2731 3131 5.982516 AGCGTTGCATGTCTTTTCAATTAAA 59.017 32.000 0.00 0.00 0.00 1.52
2732 3132 5.527951 AGCGTTGCATGTCTTTTCAATTAA 58.472 33.333 0.00 0.00 0.00 1.40
2733 3133 5.119931 AGCGTTGCATGTCTTTTCAATTA 57.880 34.783 0.00 0.00 0.00 1.40
2734 3134 3.981211 AGCGTTGCATGTCTTTTCAATT 58.019 36.364 0.00 0.00 0.00 2.32
2735 3135 3.568538 GAGCGTTGCATGTCTTTTCAAT 58.431 40.909 0.00 0.00 0.00 2.57
2736 3136 2.287547 GGAGCGTTGCATGTCTTTTCAA 60.288 45.455 0.00 0.00 0.00 2.69
2737 3137 1.266718 GGAGCGTTGCATGTCTTTTCA 59.733 47.619 0.00 0.00 0.00 2.69
2738 3138 1.537202 AGGAGCGTTGCATGTCTTTTC 59.463 47.619 0.00 0.00 0.00 2.29
2739 3139 1.267806 CAGGAGCGTTGCATGTCTTTT 59.732 47.619 0.00 0.00 0.00 2.27
2740 3140 0.877071 CAGGAGCGTTGCATGTCTTT 59.123 50.000 0.00 0.00 0.00 2.52
2741 3141 1.580845 GCAGGAGCGTTGCATGTCTT 61.581 55.000 0.00 0.00 41.17 3.01
2742 3142 2.037136 GCAGGAGCGTTGCATGTCT 61.037 57.895 0.00 0.00 41.17 3.41
2743 3143 2.327343 TGCAGGAGCGTTGCATGTC 61.327 57.895 8.43 0.00 45.89 3.06
2744 3144 2.281692 TGCAGGAGCGTTGCATGT 60.282 55.556 8.43 0.00 45.89 3.21
2748 3148 1.154150 GAACATGCAGGAGCGTTGC 60.154 57.895 4.84 3.60 46.23 4.17
2749 3149 0.877071 AAGAACATGCAGGAGCGTTG 59.123 50.000 4.84 0.00 46.23 4.10
2750 3150 0.877071 CAAGAACATGCAGGAGCGTT 59.123 50.000 4.84 0.00 46.23 4.84
2751 3151 0.035317 TCAAGAACATGCAGGAGCGT 59.965 50.000 4.84 0.00 46.23 5.07
2752 3152 1.159285 TTCAAGAACATGCAGGAGCG 58.841 50.000 4.84 0.00 46.23 5.03
2753 3153 4.970662 TTATTCAAGAACATGCAGGAGC 57.029 40.909 4.84 0.00 42.57 4.70
2790 3190 9.800572 AGCTATATGAATCAGAAGACACTACTA 57.199 33.333 0.00 0.00 0.00 1.82
2812 3212 4.156556 GGTCATCTGTTTTTGCATCAGCTA 59.843 41.667 0.00 0.00 42.74 3.32
2813 3213 3.057033 GGTCATCTGTTTTTGCATCAGCT 60.057 43.478 0.00 0.00 42.74 4.24
2814 3214 3.248266 GGTCATCTGTTTTTGCATCAGC 58.752 45.455 0.00 0.00 42.57 4.26
2815 3215 4.508461 TGGTCATCTGTTTTTGCATCAG 57.492 40.909 0.00 0.00 0.00 2.90
2816 3216 5.125900 CCTATGGTCATCTGTTTTTGCATCA 59.874 40.000 0.00 0.00 0.00 3.07
2817 3217 5.585390 CCTATGGTCATCTGTTTTTGCATC 58.415 41.667 0.00 0.00 0.00 3.91
2818 3218 4.142093 GCCTATGGTCATCTGTTTTTGCAT 60.142 41.667 0.00 0.00 0.00 3.96
2819 3219 3.193267 GCCTATGGTCATCTGTTTTTGCA 59.807 43.478 0.00 0.00 0.00 4.08
2820 3220 3.193267 TGCCTATGGTCATCTGTTTTTGC 59.807 43.478 0.00 0.00 0.00 3.68
2821 3221 5.125900 TCATGCCTATGGTCATCTGTTTTTG 59.874 40.000 0.00 0.00 34.97 2.44
2822 3222 5.126061 GTCATGCCTATGGTCATCTGTTTTT 59.874 40.000 0.00 0.00 34.97 1.94
2823 3223 4.641989 GTCATGCCTATGGTCATCTGTTTT 59.358 41.667 0.00 0.00 34.97 2.43
2829 3229 2.936919 TGGTCATGCCTATGGTCATC 57.063 50.000 7.54 0.00 38.35 2.92
2855 3255 9.832445 CTTTAGGGCACTCATAGAATAAAAGTA 57.168 33.333 0.00 0.00 0.00 2.24
2861 3261 5.887214 TGCTTTAGGGCACTCATAGAATA 57.113 39.130 0.00 0.00 37.29 1.75
2862 3262 4.778213 TGCTTTAGGGCACTCATAGAAT 57.222 40.909 0.00 0.00 37.29 2.40
2863 3263 4.568072 TTGCTTTAGGGCACTCATAGAA 57.432 40.909 0.00 0.00 42.27 2.10
2865 3265 3.065925 GCTTTGCTTTAGGGCACTCATAG 59.934 47.826 0.00 0.00 42.27 2.23
2866 3266 3.016736 GCTTTGCTTTAGGGCACTCATA 58.983 45.455 0.00 0.00 42.27 2.15
2867 3267 1.821136 GCTTTGCTTTAGGGCACTCAT 59.179 47.619 0.00 0.00 42.27 2.90
2898 3299 4.092091 CGATCAAGAACTAAGACAGCAACC 59.908 45.833 0.00 0.00 0.00 3.77
2910 3311 1.467035 GGACGTACGCGATCAAGAACT 60.467 52.381 15.93 0.00 42.00 3.01
2932 3333 1.895707 GGATCCAATCTGCTGGGCG 60.896 63.158 6.95 0.00 37.06 6.13
2933 3334 1.895707 CGGATCCAATCTGCTGGGC 60.896 63.158 13.41 0.00 37.06 5.36
2943 3344 2.187958 AGTGACTCCAATCGGATCCAA 58.812 47.619 13.41 0.00 41.79 3.53
2944 3345 1.866015 AGTGACTCCAATCGGATCCA 58.134 50.000 13.41 0.00 41.79 3.41
2945 3346 2.036089 GGTAGTGACTCCAATCGGATCC 59.964 54.545 0.00 0.00 41.79 3.36
2946 3347 2.287668 CGGTAGTGACTCCAATCGGATC 60.288 54.545 0.00 0.00 41.79 3.36
2947 3348 1.681793 CGGTAGTGACTCCAATCGGAT 59.318 52.381 0.00 0.00 41.79 4.18
2948 3349 1.100510 CGGTAGTGACTCCAATCGGA 58.899 55.000 0.00 0.00 39.79 4.55
2949 3350 0.102481 CCGGTAGTGACTCCAATCGG 59.898 60.000 0.00 0.00 0.00 4.18
2950 3351 1.100510 TCCGGTAGTGACTCCAATCG 58.899 55.000 0.00 0.00 0.00 3.34
2951 3352 2.100989 AGTCCGGTAGTGACTCCAATC 58.899 52.381 0.00 0.00 38.71 2.67
2952 3353 2.233305 AGTCCGGTAGTGACTCCAAT 57.767 50.000 0.00 0.00 38.71 3.16
2953 3354 3.759865 AGTCCGGTAGTGACTCCAA 57.240 52.632 0.00 0.00 38.71 3.53
2957 3358 2.396955 CGCGAGTCCGGTAGTGACT 61.397 63.158 0.00 0.00 45.47 3.41
2958 3359 2.099831 CGCGAGTCCGGTAGTGAC 59.900 66.667 0.00 0.00 36.06 3.67
2959 3360 3.129502 CCGCGAGTCCGGTAGTGA 61.130 66.667 8.23 0.00 43.24 3.41
2968 3369 0.040246 GTAGGCATAGACCGCGAGTC 60.040 60.000 8.23 13.88 46.71 3.36
2969 3370 1.783031 CGTAGGCATAGACCGCGAGT 61.783 60.000 8.23 3.14 35.83 4.18
2970 3371 1.082038 CGTAGGCATAGACCGCGAG 60.082 63.158 8.23 0.00 35.83 5.03
2971 3372 2.549198 CCGTAGGCATAGACCGCGA 61.549 63.158 8.23 0.00 46.14 5.87
2972 3373 2.050351 CCGTAGGCATAGACCGCG 60.050 66.667 0.00 0.00 46.14 6.46
2990 3391 0.536687 CCTATGCTGACAGCCCATGG 60.537 60.000 24.33 16.22 41.51 3.66
2991 3392 0.536687 CCCTATGCTGACAGCCCATG 60.537 60.000 24.33 11.55 41.51 3.66
2992 3393 1.713005 CCCCTATGCTGACAGCCCAT 61.713 60.000 24.33 14.42 41.51 4.00
2993 3394 2.377810 CCCCTATGCTGACAGCCCA 61.378 63.158 24.33 11.07 41.51 5.36
2994 3395 2.512896 CCCCTATGCTGACAGCCC 59.487 66.667 24.33 0.00 41.51 5.19
2995 3396 2.203266 GCCCCTATGCTGACAGCC 60.203 66.667 24.33 7.41 41.51 4.85
2996 3397 2.914289 AGCCCCTATGCTGACAGC 59.086 61.111 20.86 20.86 40.90 4.40
3002 3403 1.382695 ACGGTACAGCCCCTATGCT 60.383 57.895 0.00 0.00 44.00 3.79
3003 3404 1.069258 GACGGTACAGCCCCTATGC 59.931 63.158 0.00 0.00 0.00 3.14
3004 3405 1.362717 CGACGGTACAGCCCCTATG 59.637 63.158 0.00 0.00 0.00 2.23
3005 3406 1.831286 CCGACGGTACAGCCCCTAT 60.831 63.158 5.48 0.00 0.00 2.57
3006 3407 2.440796 CCGACGGTACAGCCCCTA 60.441 66.667 5.48 0.00 0.00 3.53
3009 3410 2.694829 CTATGCCGACGGTACAGCCC 62.695 65.000 16.73 0.00 0.00 5.19
3010 3411 1.299926 CTATGCCGACGGTACAGCC 60.300 63.158 16.73 0.00 0.00 4.85
3011 3412 0.314302 ATCTATGCCGACGGTACAGC 59.686 55.000 16.73 0.38 0.00 4.40
3012 3413 1.880675 AGATCTATGCCGACGGTACAG 59.119 52.381 16.73 10.22 0.00 2.74
3013 3414 1.977056 AGATCTATGCCGACGGTACA 58.023 50.000 16.73 6.18 0.00 2.90
3014 3415 4.017380 CATAGATCTATGCCGACGGTAC 57.983 50.000 25.81 0.00 36.83 3.34
3046 3447 3.480225 GACGGGTCTATGCCGACGG 62.480 68.421 10.29 10.29 34.75 4.79
3047 3448 2.025727 GACGGGTCTATGCCGACG 59.974 66.667 0.00 0.00 34.75 5.12
3048 3449 2.025727 CGACGGGTCTATGCCGAC 59.974 66.667 0.00 0.00 0.00 4.79
3049 3450 3.214123 CCGACGGGTCTATGCCGA 61.214 66.667 5.81 0.00 0.00 5.54
3050 3451 4.944372 GCCGACGGGTCTATGCCG 62.944 72.222 17.22 0.00 34.97 5.69
3051 3452 4.944372 CGCCGACGGGTCTATGCC 62.944 72.222 17.22 0.00 34.97 4.40
3052 3453 2.728427 CTACGCCGACGGGTCTATGC 62.728 65.000 17.22 0.00 46.04 3.14
3053 3454 1.162181 TCTACGCCGACGGGTCTATG 61.162 60.000 17.22 4.26 46.04 2.23
3054 3455 0.250640 ATCTACGCCGACGGGTCTAT 60.251 55.000 17.22 6.39 46.04 1.98
3055 3456 0.392706 TATCTACGCCGACGGGTCTA 59.607 55.000 17.22 4.38 46.04 2.59
3056 3457 0.250640 ATATCTACGCCGACGGGTCT 60.251 55.000 17.22 3.74 46.04 3.85
3057 3458 0.167689 GATATCTACGCCGACGGGTC 59.832 60.000 17.22 0.00 46.04 4.46
3058 3459 1.572085 CGATATCTACGCCGACGGGT 61.572 60.000 17.22 14.07 46.04 5.28
3059 3460 1.134075 CGATATCTACGCCGACGGG 59.866 63.158 17.22 8.43 46.04 5.28
3060 3461 0.179230 GACGATATCTACGCCGACGG 60.179 60.000 10.29 10.29 46.04 4.79
3062 3463 1.725292 GCTGACGATATCTACGCCGAC 60.725 57.143 0.34 0.00 0.00 4.79
3063 3464 0.516001 GCTGACGATATCTACGCCGA 59.484 55.000 0.34 0.00 0.00 5.54
3064 3465 0.789753 CGCTGACGATATCTACGCCG 60.790 60.000 0.34 0.00 43.93 6.46
3065 3466 0.237761 ACGCTGACGATATCTACGCC 59.762 55.000 0.34 0.00 43.93 5.68
3066 3467 2.157279 ACTACGCTGACGATATCTACGC 59.843 50.000 0.34 0.00 43.93 4.42
3067 3468 3.674281 AGACTACGCTGACGATATCTACG 59.326 47.826 0.34 0.29 43.93 3.51
3068 3469 5.050227 ACAAGACTACGCTGACGATATCTAC 60.050 44.000 0.34 0.00 43.93 2.59
3069 3470 5.055144 ACAAGACTACGCTGACGATATCTA 58.945 41.667 0.34 0.00 43.93 1.98
3070 3471 3.878103 ACAAGACTACGCTGACGATATCT 59.122 43.478 0.34 0.00 43.93 1.98
3071 3472 4.212213 ACAAGACTACGCTGACGATATC 57.788 45.455 0.00 0.00 43.93 1.63
3072 3473 3.626217 TGACAAGACTACGCTGACGATAT 59.374 43.478 0.00 0.00 43.93 1.63
3073 3474 3.004862 TGACAAGACTACGCTGACGATA 58.995 45.455 0.00 0.00 43.93 2.92
3074 3475 1.810755 TGACAAGACTACGCTGACGAT 59.189 47.619 0.00 0.00 43.93 3.73
3075 3476 1.197036 CTGACAAGACTACGCTGACGA 59.803 52.381 0.00 0.00 43.93 4.20
3077 3478 2.991434 TCTGACAAGACTACGCTGAC 57.009 50.000 0.00 0.00 0.00 3.51
3087 3488 1.532604 ATGCCGACGGTCTGACAAGA 61.533 55.000 16.73 0.00 0.00 3.02
3088 3489 0.172578 TATGCCGACGGTCTGACAAG 59.827 55.000 16.73 5.60 0.00 3.16
3089 3490 0.172578 CTATGCCGACGGTCTGACAA 59.827 55.000 16.73 0.00 0.00 3.18
3090 3491 0.963856 ACTATGCCGACGGTCTGACA 60.964 55.000 16.73 4.55 0.00 3.58
3091 3492 1.019673 TACTATGCCGACGGTCTGAC 58.980 55.000 16.73 0.00 0.00 3.51
3092 3493 1.977056 ATACTATGCCGACGGTCTGA 58.023 50.000 16.73 0.00 0.00 3.27
3093 3494 2.414293 GCTATACTATGCCGACGGTCTG 60.414 54.545 16.73 6.28 0.00 3.51
3094 3495 1.811359 GCTATACTATGCCGACGGTCT 59.189 52.381 16.73 5.65 0.00 3.85
3095 3496 1.135460 GGCTATACTATGCCGACGGTC 60.135 57.143 16.73 8.54 39.71 4.79
3096 3497 0.886563 GGCTATACTATGCCGACGGT 59.113 55.000 16.73 0.00 39.71 4.83
3097 3498 3.715854 GGCTATACTATGCCGACGG 57.284 57.895 10.29 10.29 39.71 4.79
3102 3503 0.458025 GCCGACGGCTATACTATGCC 60.458 60.000 31.30 0.00 46.69 4.40
3103 3504 3.031660 GCCGACGGCTATACTATGC 57.968 57.895 31.30 0.14 46.69 3.14
3153 3554 2.601562 GGCTAAACTATGCCGACGG 58.398 57.895 10.29 10.29 39.71 4.79
3158 3559 1.496403 GCCGACGGCTAAACTATGCC 61.496 60.000 31.30 0.00 46.69 4.40
3159 3560 1.932277 GCCGACGGCTAAACTATGC 59.068 57.895 31.30 0.14 46.69 3.14
3170 3571 2.943653 GGAAAACACTGCCGACGG 59.056 61.111 10.29 10.29 0.00 4.79
3175 3576 0.586802 GTCAGACGGAAAACACTGCC 59.413 55.000 0.00 0.00 0.00 4.85
3176 3577 0.232303 CGTCAGACGGAAAACACTGC 59.768 55.000 15.64 0.00 38.08 4.40
3187 3588 3.103911 GTCCGTTGCCGTCAGACG 61.104 66.667 16.50 16.50 42.11 4.18
3188 3589 3.103911 CGTCCGTTGCCGTCAGAC 61.104 66.667 0.00 0.00 0.00 3.51
3189 3590 4.351938 CCGTCCGTTGCCGTCAGA 62.352 66.667 0.00 0.00 0.00 3.27
3198 3599 4.595538 TTGACAGCGCCGTCCGTT 62.596 61.111 20.53 0.00 39.71 4.44
3199 3600 4.595538 TTTGACAGCGCCGTCCGT 62.596 61.111 20.53 2.46 39.71 4.69
3200 3601 3.295228 CTTTTGACAGCGCCGTCCG 62.295 63.158 20.53 3.54 40.75 4.79
3201 3602 2.556287 CTTTTGACAGCGCCGTCC 59.444 61.111 20.53 3.99 34.88 4.79
3202 3603 2.127232 GCTTTTGACAGCGCCGTC 60.127 61.111 16.89 16.89 36.40 4.79
3208 3609 1.439365 CGTCAGCGCTTTTGACAGC 60.439 57.895 23.04 2.50 43.98 4.40
3209 3610 0.581529 TTCGTCAGCGCTTTTGACAG 59.418 50.000 23.04 16.72 43.98 3.51
3210 3611 1.194547 GATTCGTCAGCGCTTTTGACA 59.805 47.619 23.04 9.23 43.98 3.58
3211 3612 1.783416 CGATTCGTCAGCGCTTTTGAC 60.783 52.381 7.50 13.11 41.14 3.18
3212 3613 0.438445 CGATTCGTCAGCGCTTTTGA 59.562 50.000 7.50 0.00 38.14 2.69
3213 3614 0.163788 ACGATTCGTCAGCGCTTTTG 59.836 50.000 7.50 0.00 33.69 2.44
3214 3615 0.163788 CACGATTCGTCAGCGCTTTT 59.836 50.000 7.50 0.00 38.32 2.27
3215 3616 1.781555 CACGATTCGTCAGCGCTTT 59.218 52.632 7.50 0.00 38.32 3.51
3216 3617 2.730672 GCACGATTCGTCAGCGCTT 61.731 57.895 7.50 0.00 38.32 4.68
3217 3618 3.181967 GCACGATTCGTCAGCGCT 61.182 61.111 2.64 2.64 38.32 5.92
3218 3619 3.010585 TTGCACGATTCGTCAGCGC 62.011 57.895 9.11 10.31 38.32 5.92
3219 3620 1.225475 GTTGCACGATTCGTCAGCG 60.225 57.895 9.11 0.00 38.32 5.18
3220 3621 1.225475 CGTTGCACGATTCGTCAGC 60.225 57.895 9.11 11.41 46.05 4.26
3221 3622 1.416049 CCGTTGCACGATTCGTCAG 59.584 57.895 9.11 0.10 46.05 3.51
3222 3623 2.663478 GCCGTTGCACGATTCGTCA 61.663 57.895 9.11 7.87 46.05 4.35
3223 3624 2.095843 GCCGTTGCACGATTCGTC 59.904 61.111 9.11 5.33 46.05 4.20
3224 3625 2.663520 TGCCGTTGCACGATTCGT 60.664 55.556 5.75 5.75 46.05 3.85
3233 3634 4.560856 TTTGCCACGTGCCGTTGC 62.561 61.111 10.91 8.49 46.27 4.17
3234 3635 2.353376 CTTTGCCACGTGCCGTTG 60.353 61.111 10.91 0.00 38.32 4.10
3235 3636 2.944409 TACCTTTGCCACGTGCCGTT 62.944 55.000 10.91 0.00 38.32 4.44
3236 3637 2.741486 ATACCTTTGCCACGTGCCGT 62.741 55.000 10.91 1.57 42.36 5.68
3237 3638 2.038269 ATACCTTTGCCACGTGCCG 61.038 57.895 10.91 0.00 40.16 5.69
3238 3639 1.506262 CATACCTTTGCCACGTGCC 59.494 57.895 10.91 0.00 40.16 5.01
3239 3640 1.154035 GCATACCTTTGCCACGTGC 60.154 57.895 10.91 6.53 36.60 5.34
3246 3647 3.098555 CCGTCGGCATACCTTTGC 58.901 61.111 0.00 0.00 42.01 3.68
3275 3676 4.697756 CACCACGGGATGCCACGT 62.698 66.667 3.39 0.00 45.25 4.49
3277 3678 4.722700 AGCACCACGGGATGCCAC 62.723 66.667 0.00 0.00 43.12 5.01
3278 3679 4.408821 GAGCACCACGGGATGCCA 62.409 66.667 0.00 0.00 43.12 4.92
3280 3681 4.101448 AGGAGCACCACGGGATGC 62.101 66.667 0.00 0.00 42.39 3.91
3281 3682 2.124983 CAGGAGCACCACGGGATG 60.125 66.667 2.07 0.00 38.94 3.51
3282 3683 3.402681 CCAGGAGCACCACGGGAT 61.403 66.667 2.07 0.00 38.94 3.85
3283 3684 4.954118 ACCAGGAGCACCACGGGA 62.954 66.667 12.26 0.00 38.94 5.14
3284 3685 4.704833 CACCAGGAGCACCACGGG 62.705 72.222 12.26 8.42 38.94 5.28
3285 3686 4.704833 CCACCAGGAGCACCACGG 62.705 72.222 2.07 4.99 38.94 4.94
3287 3688 4.269523 TGCCACCAGGAGCACCAC 62.270 66.667 2.07 0.00 38.94 4.16
3288 3689 3.957586 CTGCCACCAGGAGCACCA 61.958 66.667 2.07 0.00 38.94 4.17
3296 3697 2.517875 GCATAGCCCTGCCACCAG 60.518 66.667 0.00 0.00 36.10 4.00
3314 3715 0.969149 TCCATCTATGCCTGCCGTAG 59.031 55.000 0.00 0.00 34.88 3.51
3315 3716 1.550524 GATCCATCTATGCCTGCCGTA 59.449 52.381 0.00 0.00 0.00 4.02
3316 3717 0.322975 GATCCATCTATGCCTGCCGT 59.677 55.000 0.00 0.00 0.00 5.68
3317 3718 0.612229 AGATCCATCTATGCCTGCCG 59.388 55.000 0.00 0.00 34.85 5.69
3326 3727 3.961480 CCGTTGGCATAGATCCATCTA 57.039 47.619 0.00 0.00 43.00 1.98
3327 3728 2.847327 CCGTTGGCATAGATCCATCT 57.153 50.000 0.00 0.00 40.86 2.90
3352 3753 4.663444 GCAGAGCTATGCCTACGG 57.337 61.111 22.72 0.00 40.43 4.02
3358 3759 1.424493 GACACGTGGCAGAGCTATGC 61.424 60.000 24.98 24.98 45.74 3.14
3359 3760 0.108662 TGACACGTGGCAGAGCTATG 60.109 55.000 23.03 3.34 32.30 2.23
3360 3761 0.826715 ATGACACGTGGCAGAGCTAT 59.173 50.000 30.46 8.92 35.91 2.97
3361 3762 0.608130 AATGACACGTGGCAGAGCTA 59.392 50.000 30.46 4.47 35.91 3.32
3362 3763 0.671781 GAATGACACGTGGCAGAGCT 60.672 55.000 30.46 13.86 35.91 4.09
3363 3764 1.639298 GGAATGACACGTGGCAGAGC 61.639 60.000 30.46 19.83 35.91 4.09
3364 3765 1.021390 GGGAATGACACGTGGCAGAG 61.021 60.000 30.46 0.00 35.91 3.35
3365 3766 1.003839 GGGAATGACACGTGGCAGA 60.004 57.895 30.46 7.14 35.91 4.26
3366 3767 0.249120 TAGGGAATGACACGTGGCAG 59.751 55.000 30.46 0.00 35.91 4.85
3367 3768 0.249120 CTAGGGAATGACACGTGGCA 59.751 55.000 29.28 29.28 37.54 4.92
3368 3769 0.249398 ACTAGGGAATGACACGTGGC 59.751 55.000 21.57 19.24 0.00 5.01
3369 3770 2.618053 GAACTAGGGAATGACACGTGG 58.382 52.381 21.57 1.66 0.00 4.94
3370 3771 2.233922 AGGAACTAGGGAATGACACGTG 59.766 50.000 15.48 15.48 36.02 4.49
3371 3772 2.496470 GAGGAACTAGGGAATGACACGT 59.504 50.000 0.00 0.00 41.55 4.49
3372 3773 2.159085 GGAGGAACTAGGGAATGACACG 60.159 54.545 0.00 0.00 41.55 4.49
3373 3774 3.108376 AGGAGGAACTAGGGAATGACAC 58.892 50.000 0.00 0.00 41.55 3.67
3374 3775 3.107601 CAGGAGGAACTAGGGAATGACA 58.892 50.000 0.00 0.00 41.55 3.58
3375 3776 2.436173 CCAGGAGGAACTAGGGAATGAC 59.564 54.545 0.00 0.00 41.55 3.06
3376 3777 2.764269 CCAGGAGGAACTAGGGAATGA 58.236 52.381 0.00 0.00 41.55 2.57
3377 3778 1.141858 GCCAGGAGGAACTAGGGAATG 59.858 57.143 0.00 0.00 41.55 2.67
3378 3779 1.512735 GCCAGGAGGAACTAGGGAAT 58.487 55.000 0.00 0.00 41.55 3.01
3379 3780 0.976073 CGCCAGGAGGAACTAGGGAA 60.976 60.000 0.00 0.00 41.55 3.97
3380 3781 1.381327 CGCCAGGAGGAACTAGGGA 60.381 63.158 0.00 0.00 41.55 4.20
3381 3782 2.435693 CCGCCAGGAGGAACTAGGG 61.436 68.421 2.15 0.00 41.55 3.53
3382 3783 3.095347 GCCGCCAGGAGGAACTAGG 62.095 68.421 14.69 0.00 41.55 3.02
3383 3784 2.303549 CTGCCGCCAGGAGGAACTAG 62.304 65.000 14.69 1.23 41.55 2.57
3384 3785 2.284331 TGCCGCCAGGAGGAACTA 60.284 61.111 14.69 0.00 41.55 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.