Multiple sequence alignment - TraesCS7A01G083800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G083800 chr7A 100.000 2912 0 0 1 2912 48524735 48527646 0.000000e+00 5378.0
1 TraesCS7A01G083800 chr7A 82.261 1088 130 32 1238 2289 48715649 48716709 0.000000e+00 881.0
2 TraesCS7A01G083800 chr7A 84.840 719 82 12 1446 2153 48583893 48584595 0.000000e+00 699.0
3 TraesCS7A01G083800 chr7A 79.957 469 67 22 1218 1665 48756002 48756464 1.300000e-83 320.0
4 TraesCS7A01G083800 chr7A 84.457 341 29 12 2305 2624 48716602 48716939 6.060000e-82 315.0
5 TraesCS7A01G083800 chr7A 82.008 239 27 5 2391 2624 48585026 48585253 3.830000e-44 189.0
6 TraesCS7A01G083800 chr7A 81.897 116 12 6 1218 1327 48583658 48583770 4.000000e-14 89.8
7 TraesCS7A01G083800 chr7A 100.000 29 0 0 191 219 134546155 134546127 1.000000e-03 54.7
8 TraesCS7A01G083800 chr4A 92.180 2941 178 30 1 2912 660451209 660454126 0.000000e+00 4109.0
9 TraesCS7A01G083800 chr4A 84.031 908 103 28 1238 2129 660624767 660625648 0.000000e+00 835.0
10 TraesCS7A01G083800 chr4A 86.268 284 32 5 1447 1728 660654519 660654797 4.720000e-78 302.0
11 TraesCS7A01G083800 chr4A 86.364 110 15 0 1218 1327 660654270 660654379 1.420000e-23 121.0
12 TraesCS7A01G083800 chr7D 89.608 1992 118 47 367 2310 46712997 46711047 0.000000e+00 2449.0
13 TraesCS7A01G083800 chr7D 83.198 1107 129 29 1238 2310 46670771 46669688 0.000000e+00 961.0
14 TraesCS7A01G083800 chr7D 83.908 609 70 15 2305 2890 46711175 46710572 9.120000e-155 556.0
15 TraesCS7A01G083800 chr7D 93.953 215 10 3 1447 1659 46586132 46585919 3.620000e-84 322.0
16 TraesCS7A01G083800 chr7D 85.944 249 25 4 2391 2630 46669715 46669468 1.040000e-64 257.0
17 TraesCS7A01G083800 chr3B 84.615 117 11 5 1223 1332 191290484 191290600 3.070000e-20 110.0
18 TraesCS7A01G083800 chr1D 81.967 122 15 4 1219 1335 308459964 308459845 2.390000e-16 97.1
19 TraesCS7A01G083800 chr4B 85.965 57 2 6 165 219 417339547 417339599 4.050000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G083800 chr7A 48524735 48527646 2911 False 5378.000000 5378 100.000 1 2912 1 chr7A.!!$F1 2911
1 TraesCS7A01G083800 chr7A 48715649 48716939 1290 False 598.000000 881 83.359 1238 2624 2 chr7A.!!$F4 1386
2 TraesCS7A01G083800 chr7A 48583658 48585253 1595 False 325.933333 699 82.915 1218 2624 3 chr7A.!!$F3 1406
3 TraesCS7A01G083800 chr4A 660451209 660454126 2917 False 4109.000000 4109 92.180 1 2912 1 chr4A.!!$F1 2911
4 TraesCS7A01G083800 chr4A 660624767 660625648 881 False 835.000000 835 84.031 1238 2129 1 chr4A.!!$F2 891
5 TraesCS7A01G083800 chr4A 660654270 660654797 527 False 211.500000 302 86.316 1218 1728 2 chr4A.!!$F3 510
6 TraesCS7A01G083800 chr7D 46710572 46712997 2425 True 1502.500000 2449 86.758 367 2890 2 chr7D.!!$R3 2523
7 TraesCS7A01G083800 chr7D 46669468 46670771 1303 True 609.000000 961 84.571 1238 2630 2 chr7D.!!$R2 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.023732 CATGCGAGCGTCTACGTTTG 59.976 55.0 0.00 3.35 42.22 2.93 F
989 1015 0.034896 CCACAGAGCACCGGTAGTTT 59.965 55.0 6.87 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1536 1618 0.321122 CCTCCGTCTGCTTGAGCTTT 60.321 55.0 4.44 0.00 42.66 3.51 R
2688 3250 0.101579 TCTTGTGACACGCGTGAGAA 59.898 50.0 42.94 25.21 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.733458 TCAAATCAGAAAAATGACGAGATGAAT 58.267 29.630 0.00 0.00 30.46 2.57
70 71 8.795341 CAAATCAGAAAAATGACGAGATGAATG 58.205 33.333 0.00 0.00 30.46 2.67
72 73 7.065216 TCAGAAAAATGACGAGATGAATGAC 57.935 36.000 0.00 0.00 0.00 3.06
73 74 5.956070 CAGAAAAATGACGAGATGAATGACG 59.044 40.000 0.00 0.00 0.00 4.35
92 93 2.112297 TGGCCGGTTGTCCAAGAC 59.888 61.111 1.90 0.00 0.00 3.01
96 97 0.534203 GCCGGTTGTCCAAGACTTGA 60.534 55.000 16.99 0.20 33.15 3.02
97 98 1.512926 CCGGTTGTCCAAGACTTGAG 58.487 55.000 16.99 7.01 33.15 3.02
114 115 0.373716 GAGTGCGCCTTGTAAATCCG 59.626 55.000 4.18 0.00 0.00 4.18
139 140 9.087424 CGAATTTCTTTGTTTTTCTTCTTTCCT 57.913 29.630 0.00 0.00 0.00 3.36
145 146 6.877611 TTGTTTTTCTTCTTTCCTAGCGAT 57.122 33.333 0.00 0.00 0.00 4.58
149 150 3.802948 TCTTCTTTCCTAGCGATGTCC 57.197 47.619 0.00 0.00 0.00 4.02
175 176 2.140717 GTTGGAGACGACGTTTCCATT 58.859 47.619 33.12 3.82 44.41 3.16
176 177 1.790755 TGGAGACGACGTTTCCATTG 58.209 50.000 30.34 0.00 41.02 2.82
177 178 1.341852 TGGAGACGACGTTTCCATTGA 59.658 47.619 30.34 12.69 41.02 2.57
178 179 1.725164 GGAGACGACGTTTCCATTGAC 59.275 52.381 27.55 3.94 36.89 3.18
179 180 2.609737 GGAGACGACGTTTCCATTGACT 60.610 50.000 27.55 6.25 36.89 3.41
180 181 3.366679 GGAGACGACGTTTCCATTGACTA 60.367 47.826 27.55 0.00 36.89 2.59
193 194 3.126514 CCATTGACTACTACGTGACGTCT 59.873 47.826 16.19 3.37 41.54 4.18
214 215 3.996363 CTGTGGTGATTTCGTCAATCTCA 59.004 43.478 10.22 6.95 41.91 3.27
223 224 5.947228 TTTCGTCAATCTCAAGATTTGCT 57.053 34.783 2.47 0.00 42.41 3.91
229 230 5.049198 GTCAATCTCAAGATTTGCTGACACA 60.049 40.000 13.76 0.00 42.41 3.72
235 236 4.883585 TCAAGATTTGCTGACACAGTTTCT 59.116 37.500 0.00 0.00 33.43 2.52
238 239 1.581934 TTGCTGACACAGTTTCTCGG 58.418 50.000 0.00 0.00 33.43 4.63
249 250 2.414481 CAGTTTCTCGGAAGTGCTCATG 59.586 50.000 0.00 0.00 0.00 3.07
255 256 0.824109 CGGAAGTGCTCATGGGAGTA 59.176 55.000 0.00 0.00 43.37 2.59
265 266 1.067846 TCATGGGAGTATGATACGCGC 60.068 52.381 14.66 14.66 40.77 6.86
271 272 1.001706 GAGTATGATACGCGCCTGTGA 60.002 52.381 5.73 0.00 0.00 3.58
279 280 2.596904 ACGCGCCTGTGAGTTTATAT 57.403 45.000 5.73 0.00 0.00 0.86
280 281 2.201732 ACGCGCCTGTGAGTTTATATG 58.798 47.619 5.73 0.00 0.00 1.78
285 286 4.699637 CGCCTGTGAGTTTATATGGGTAA 58.300 43.478 0.00 0.00 0.00 2.85
292 293 8.330466 TGTGAGTTTATATGGGTAACTGTTTG 57.670 34.615 0.00 0.00 32.58 2.93
310 311 3.413861 TGTGTGCATGCGAGCGTC 61.414 61.111 14.09 4.40 37.31 5.19
313 314 1.805539 TGTGCATGCGAGCGTCTAC 60.806 57.895 14.09 3.27 37.31 2.59
318 319 0.023732 CATGCGAGCGTCTACGTTTG 59.976 55.000 0.00 3.35 42.22 2.93
319 320 0.388134 ATGCGAGCGTCTACGTTTGT 60.388 50.000 0.00 0.00 42.22 2.83
320 321 0.238025 TGCGAGCGTCTACGTTTGTA 59.762 50.000 0.00 0.00 42.22 2.41
321 322 0.632241 GCGAGCGTCTACGTTTGTAC 59.368 55.000 0.00 0.00 42.22 2.90
322 323 1.253999 CGAGCGTCTACGTTTGTACC 58.746 55.000 0.00 0.00 42.22 3.34
323 324 1.253999 GAGCGTCTACGTTTGTACCG 58.746 55.000 0.00 0.00 42.22 4.02
324 325 0.874390 AGCGTCTACGTTTGTACCGA 59.126 50.000 0.00 0.00 42.22 4.69
325 326 1.135859 AGCGTCTACGTTTGTACCGAG 60.136 52.381 0.00 0.00 42.22 4.63
327 328 1.466360 CGTCTACGTTTGTACCGAGGG 60.466 57.143 0.00 0.00 34.11 4.30
328 329 1.812571 GTCTACGTTTGTACCGAGGGA 59.187 52.381 0.00 0.00 0.00 4.20
329 330 2.228822 GTCTACGTTTGTACCGAGGGAA 59.771 50.000 0.00 0.00 0.00 3.97
330 331 2.890311 TCTACGTTTGTACCGAGGGAAA 59.110 45.455 0.00 0.00 0.00 3.13
331 332 2.618442 ACGTTTGTACCGAGGGAAAA 57.382 45.000 0.00 0.00 0.00 2.29
365 372 6.662755 TCACAATAAGGCATGATTAGTTCCT 58.337 36.000 0.00 0.00 0.00 3.36
396 403 0.598065 GAACCAAGGCGTGCAGAAAT 59.402 50.000 0.00 0.00 0.00 2.17
430 437 2.093394 GTCTCTCTCCCACTAAAAGGCC 60.093 54.545 0.00 0.00 0.00 5.19
514 532 3.948473 CGTCCTTGATCTCCTACAGAAGA 59.052 47.826 0.00 0.00 33.62 2.87
617 635 5.464722 CACACTGATTGTACTATCATGAGCC 59.535 44.000 18.31 0.00 35.67 4.70
639 657 5.504501 GCCTAATTATTTTACACGAACCGGG 60.505 44.000 6.32 0.00 35.82 5.73
640 658 4.359971 AATTATTTTACACGAACCGGGC 57.640 40.909 6.32 0.00 31.12 6.13
641 659 1.357907 TATTTTACACGAACCGGGCG 58.642 50.000 16.09 16.09 31.12 6.13
642 660 1.914531 ATTTTACACGAACCGGGCGC 61.915 55.000 17.35 0.00 31.12 6.53
643 661 2.992607 TTTTACACGAACCGGGCGCT 62.993 55.000 17.35 6.89 31.12 5.92
651 669 4.832608 ACCGGGCGCTCGATTTCC 62.833 66.667 34.96 9.20 0.00 3.13
857 880 3.958860 CCTCCCATCATCCCCGGC 61.959 72.222 0.00 0.00 0.00 6.13
864 887 0.250467 CATCATCCCCGGCTAACCAG 60.250 60.000 0.00 0.00 34.57 4.00
865 888 0.399949 ATCATCCCCGGCTAACCAGA 60.400 55.000 0.00 0.00 34.57 3.86
894 917 0.738412 CCCCTATTTATACCCGCGCG 60.738 60.000 25.67 25.67 0.00 6.86
964 990 1.331138 CTCGACCTTCCTAGCTACACG 59.669 57.143 0.00 0.00 0.00 4.49
965 991 0.381089 CGACCTTCCTAGCTACACGG 59.619 60.000 0.00 0.00 0.00 4.94
966 992 1.760192 GACCTTCCTAGCTACACGGA 58.240 55.000 0.00 0.00 0.00 4.69
967 993 1.404748 GACCTTCCTAGCTACACGGAC 59.595 57.143 0.00 0.00 0.00 4.79
970 996 1.134560 CTTCCTAGCTACACGGACACC 59.865 57.143 0.00 0.00 0.00 4.16
971 997 0.682209 TCCTAGCTACACGGACACCC 60.682 60.000 0.00 0.00 0.00 4.61
979 1005 2.842462 ACGGACACCCACAGAGCA 60.842 61.111 0.00 0.00 0.00 4.26
981 1007 2.032681 GGACACCCACAGAGCACC 59.967 66.667 0.00 0.00 0.00 5.01
983 1009 3.883744 GACACCCACAGAGCACCGG 62.884 68.421 0.00 0.00 0.00 5.28
989 1015 0.034896 CCACAGAGCACCGGTAGTTT 59.965 55.000 6.87 0.00 0.00 2.66
1044 1070 4.437587 CTGAGCCTTGGCCTGGGG 62.438 72.222 15.43 10.40 0.00 4.96
1064 1090 3.966543 CGTTTCCCAGCCCACCCT 61.967 66.667 0.00 0.00 0.00 4.34
1335 1367 2.111043 AAGACGCACCACACCCTG 59.889 61.111 0.00 0.00 0.00 4.45
1406 1478 4.969484 TCACATGGATGATTCATGGAGAG 58.031 43.478 17.51 5.28 44.42 3.20
1407 1479 4.657039 TCACATGGATGATTCATGGAGAGA 59.343 41.667 17.51 7.33 44.42 3.10
1408 1480 5.309806 TCACATGGATGATTCATGGAGAGAT 59.690 40.000 17.51 0.00 44.42 2.75
1409 1481 5.644206 CACATGGATGATTCATGGAGAGATC 59.356 44.000 17.51 0.00 44.42 2.75
1411 1483 4.154942 TGGATGATTCATGGAGAGATCGA 58.845 43.478 3.32 0.00 0.00 3.59
1412 1484 4.776308 TGGATGATTCATGGAGAGATCGAT 59.224 41.667 3.32 0.00 0.00 3.59
1413 1485 5.110598 GGATGATTCATGGAGAGATCGATG 58.889 45.833 0.54 0.00 0.00 3.84
1414 1486 5.105432 GGATGATTCATGGAGAGATCGATGA 60.105 44.000 0.54 0.00 33.98 2.92
1415 1487 5.997384 TGATTCATGGAGAGATCGATGAT 57.003 39.130 0.54 0.00 35.39 2.45
1416 1488 5.721232 TGATTCATGGAGAGATCGATGATG 58.279 41.667 0.54 0.00 35.39 3.07
1417 1489 4.532314 TTCATGGAGAGATCGATGATGG 57.468 45.455 0.54 0.00 35.39 3.51
1421 1493 1.345741 GGAGAGATCGATGATGGGCAA 59.654 52.381 0.54 0.00 0.00 4.52
1440 1513 4.107622 GCAAGGAAATGACATGGATTTCG 58.892 43.478 18.77 11.07 39.67 3.46
1870 1973 4.728102 CCGGAGCAACGTACGGCA 62.728 66.667 21.06 0.00 39.85 5.69
1942 2045 2.816360 CTGTGACGCCGCCATGATG 61.816 63.158 0.00 0.00 0.00 3.07
2132 2247 8.253113 GGATGAATGTATCCATGTGAAAAGTTT 58.747 33.333 0.00 0.00 44.90 2.66
2260 2698 1.008309 GCAGCGTAGATCGAGGGTC 60.008 63.158 0.00 0.00 42.86 4.46
2300 2849 3.211045 GACTACTTGGCTTGGTTTGTCA 58.789 45.455 0.00 0.00 0.00 3.58
2301 2850 3.214328 ACTACTTGGCTTGGTTTGTCAG 58.786 45.455 0.00 0.00 0.00 3.51
2302 2851 2.435372 ACTTGGCTTGGTTTGTCAGA 57.565 45.000 0.00 0.00 0.00 3.27
2303 2852 2.949447 ACTTGGCTTGGTTTGTCAGAT 58.051 42.857 0.00 0.00 0.00 2.90
2304 2853 2.624838 ACTTGGCTTGGTTTGTCAGATG 59.375 45.455 0.00 0.00 0.00 2.90
2305 2854 2.363306 TGGCTTGGTTTGTCAGATGT 57.637 45.000 0.00 0.00 0.00 3.06
2306 2855 3.500448 TGGCTTGGTTTGTCAGATGTA 57.500 42.857 0.00 0.00 0.00 2.29
2307 2856 4.032960 TGGCTTGGTTTGTCAGATGTAT 57.967 40.909 0.00 0.00 0.00 2.29
2308 2857 4.009675 TGGCTTGGTTTGTCAGATGTATC 58.990 43.478 0.00 0.00 0.00 2.24
2309 2858 4.009675 GGCTTGGTTTGTCAGATGTATCA 58.990 43.478 0.00 0.00 0.00 2.15
2310 2859 4.142600 GGCTTGGTTTGTCAGATGTATCAC 60.143 45.833 0.00 0.00 0.00 3.06
2311 2860 4.142600 GCTTGGTTTGTCAGATGTATCACC 60.143 45.833 0.00 0.00 0.00 4.02
2312 2861 4.632327 TGGTTTGTCAGATGTATCACCA 57.368 40.909 0.00 0.00 0.00 4.17
2313 2862 4.979335 TGGTTTGTCAGATGTATCACCAA 58.021 39.130 0.00 0.00 30.01 3.67
2314 2863 4.759693 TGGTTTGTCAGATGTATCACCAAC 59.240 41.667 0.00 0.00 30.01 3.77
2315 2864 4.759693 GGTTTGTCAGATGTATCACCAACA 59.240 41.667 0.00 0.00 0.00 3.33
2316 2865 5.415701 GGTTTGTCAGATGTATCACCAACAT 59.584 40.000 0.00 0.00 40.23 2.71
2317 2866 6.317088 GTTTGTCAGATGTATCACCAACATG 58.683 40.000 0.00 0.00 37.69 3.21
2318 2867 5.164620 TGTCAGATGTATCACCAACATGT 57.835 39.130 0.00 0.00 37.69 3.21
2319 2868 5.559770 TGTCAGATGTATCACCAACATGTT 58.440 37.500 4.92 4.92 37.69 2.71
2320 2869 5.412286 TGTCAGATGTATCACCAACATGTTG 59.588 40.000 28.18 28.18 37.69 3.33
2321 2870 5.643348 GTCAGATGTATCACCAACATGTTGA 59.357 40.000 34.76 19.25 42.93 3.18
2322 2871 5.876460 TCAGATGTATCACCAACATGTTGAG 59.124 40.000 34.76 26.24 42.93 3.02
2323 2872 5.645067 CAGATGTATCACCAACATGTTGAGT 59.355 40.000 34.76 26.81 42.93 3.41
2324 2873 5.645067 AGATGTATCACCAACATGTTGAGTG 59.355 40.000 34.76 33.43 42.93 3.51
2325 2874 4.967036 TGTATCACCAACATGTTGAGTGA 58.033 39.130 37.07 37.07 45.45 3.41
2327 2876 6.003326 TGTATCACCAACATGTTGAGTGATT 58.997 36.000 41.64 33.19 46.62 2.57
2328 2877 6.489700 TGTATCACCAACATGTTGAGTGATTT 59.510 34.615 41.64 33.11 46.62 2.17
2329 2878 5.850557 TCACCAACATGTTGAGTGATTTT 57.149 34.783 34.61 14.57 41.37 1.82
2330 2879 5.830912 TCACCAACATGTTGAGTGATTTTC 58.169 37.500 34.61 0.00 41.37 2.29
2331 2880 5.593909 TCACCAACATGTTGAGTGATTTTCT 59.406 36.000 34.61 13.59 41.37 2.52
2332 2881 6.770303 TCACCAACATGTTGAGTGATTTTCTA 59.230 34.615 34.61 22.51 41.37 2.10
2333 2882 7.284261 TCACCAACATGTTGAGTGATTTTCTAA 59.716 33.333 34.61 22.06 41.37 2.10
2334 2883 8.084073 CACCAACATGTTGAGTGATTTTCTAAT 58.916 33.333 33.71 11.02 42.93 1.73
2335 2884 8.641541 ACCAACATGTTGAGTGATTTTCTAATT 58.358 29.630 34.76 6.25 42.93 1.40
2336 2885 9.480053 CCAACATGTTGAGTGATTTTCTAATTT 57.520 29.630 34.76 0.00 42.93 1.82
2343 2892 9.841880 GTTGAGTGATTTTCTAATTTTCTACCC 57.158 33.333 0.00 0.00 0.00 3.69
2344 2893 9.807921 TTGAGTGATTTTCTAATTTTCTACCCT 57.192 29.630 0.00 0.00 0.00 4.34
2345 2894 9.231297 TGAGTGATTTTCTAATTTTCTACCCTG 57.769 33.333 0.00 0.00 0.00 4.45
2346 2895 9.232473 GAGTGATTTTCTAATTTTCTACCCTGT 57.768 33.333 0.00 0.00 0.00 4.00
2347 2896 9.232473 AGTGATTTTCTAATTTTCTACCCTGTC 57.768 33.333 0.00 0.00 0.00 3.51
2348 2897 8.459635 GTGATTTTCTAATTTTCTACCCTGTCC 58.540 37.037 0.00 0.00 0.00 4.02
2349 2898 8.390921 TGATTTTCTAATTTTCTACCCTGTCCT 58.609 33.333 0.00 0.00 0.00 3.85
2350 2899 7.996098 TTTTCTAATTTTCTACCCTGTCCTG 57.004 36.000 0.00 0.00 0.00 3.86
2351 2900 5.099042 TCTAATTTTCTACCCTGTCCTGC 57.901 43.478 0.00 0.00 0.00 4.85
2352 2901 3.806949 AATTTTCTACCCTGTCCTGCA 57.193 42.857 0.00 0.00 0.00 4.41
2353 2902 4.322057 AATTTTCTACCCTGTCCTGCAT 57.678 40.909 0.00 0.00 0.00 3.96
2354 2903 5.450818 AATTTTCTACCCTGTCCTGCATA 57.549 39.130 0.00 0.00 0.00 3.14
2355 2904 4.487714 TTTTCTACCCTGTCCTGCATAG 57.512 45.455 0.00 0.00 0.00 2.23
2356 2905 3.398318 TTCTACCCTGTCCTGCATAGA 57.602 47.619 0.00 0.00 0.00 1.98
2357 2906 3.619900 TCTACCCTGTCCTGCATAGAT 57.380 47.619 0.00 0.00 0.00 1.98
2358 2907 3.234353 TCTACCCTGTCCTGCATAGATG 58.766 50.000 0.00 0.00 0.00 2.90
2359 2908 1.885049 ACCCTGTCCTGCATAGATGT 58.115 50.000 0.00 0.00 0.00 3.06
2360 2909 2.200081 ACCCTGTCCTGCATAGATGTT 58.800 47.619 0.00 0.00 0.00 2.71
2361 2910 2.092753 ACCCTGTCCTGCATAGATGTTG 60.093 50.000 0.00 0.00 0.00 3.33
2362 2911 1.945394 CCTGTCCTGCATAGATGTTGC 59.055 52.381 0.00 0.00 40.55 4.17
2367 2916 3.157727 TGCATAGATGTTGCAGCGT 57.842 47.368 0.00 0.00 44.73 5.07
2368 2917 2.307934 TGCATAGATGTTGCAGCGTA 57.692 45.000 0.00 0.00 44.73 4.42
2369 2918 2.204237 TGCATAGATGTTGCAGCGTAG 58.796 47.619 0.00 0.00 44.73 3.51
2370 2919 2.159114 TGCATAGATGTTGCAGCGTAGA 60.159 45.455 0.00 0.00 44.73 2.59
2371 2920 3.062763 GCATAGATGTTGCAGCGTAGAT 58.937 45.455 0.00 0.00 39.90 1.98
2372 2921 3.122613 GCATAGATGTTGCAGCGTAGATC 59.877 47.826 0.00 0.00 39.90 2.75
2373 2922 2.967599 AGATGTTGCAGCGTAGATCA 57.032 45.000 0.00 0.00 0.00 2.92
2374 2923 2.819115 AGATGTTGCAGCGTAGATCAG 58.181 47.619 0.00 0.00 0.00 2.90
2375 2924 1.863454 GATGTTGCAGCGTAGATCAGG 59.137 52.381 0.00 0.00 0.00 3.86
2376 2925 0.894835 TGTTGCAGCGTAGATCAGGA 59.105 50.000 0.00 0.00 0.00 3.86
2377 2926 1.275010 TGTTGCAGCGTAGATCAGGAA 59.725 47.619 0.00 0.00 0.00 3.36
2378 2927 2.093500 TGTTGCAGCGTAGATCAGGAAT 60.093 45.455 0.00 0.00 0.00 3.01
2379 2928 2.939103 GTTGCAGCGTAGATCAGGAATT 59.061 45.455 0.00 0.00 0.00 2.17
2380 2929 2.554142 TGCAGCGTAGATCAGGAATTG 58.446 47.619 0.00 0.00 0.00 2.32
2381 2930 1.869767 GCAGCGTAGATCAGGAATTGG 59.130 52.381 0.00 0.00 0.00 3.16
2382 2931 2.743183 GCAGCGTAGATCAGGAATTGGT 60.743 50.000 0.00 0.00 0.00 3.67
2383 2932 2.868583 CAGCGTAGATCAGGAATTGGTG 59.131 50.000 0.00 0.00 0.00 4.17
2384 2933 2.501723 AGCGTAGATCAGGAATTGGTGT 59.498 45.455 0.00 0.00 0.00 4.16
2385 2934 3.704566 AGCGTAGATCAGGAATTGGTGTA 59.295 43.478 0.00 0.00 0.00 2.90
2386 2935 4.051922 GCGTAGATCAGGAATTGGTGTAG 58.948 47.826 0.00 0.00 0.00 2.74
2387 2936 4.441634 GCGTAGATCAGGAATTGGTGTAGT 60.442 45.833 0.00 0.00 0.00 2.73
2388 2937 5.221185 GCGTAGATCAGGAATTGGTGTAGTA 60.221 44.000 0.00 0.00 0.00 1.82
2389 2938 6.516860 GCGTAGATCAGGAATTGGTGTAGTAT 60.517 42.308 0.00 0.00 0.00 2.12
2390 2939 7.434492 CGTAGATCAGGAATTGGTGTAGTATT 58.566 38.462 0.00 0.00 0.00 1.89
2391 2940 8.573885 CGTAGATCAGGAATTGGTGTAGTATTA 58.426 37.037 0.00 0.00 0.00 0.98
2392 2941 9.694137 GTAGATCAGGAATTGGTGTAGTATTAC 57.306 37.037 0.00 0.00 0.00 1.89
2393 2942 8.554490 AGATCAGGAATTGGTGTAGTATTACT 57.446 34.615 1.30 1.30 0.00 2.24
2394 2943 8.993424 AGATCAGGAATTGGTGTAGTATTACTT 58.007 33.333 0.85 0.00 0.00 2.24
2395 2944 8.964476 ATCAGGAATTGGTGTAGTATTACTTG 57.036 34.615 0.85 0.00 0.00 3.16
2396 2945 8.141298 TCAGGAATTGGTGTAGTATTACTTGA 57.859 34.615 0.85 0.00 0.00 3.02
2397 2946 8.038944 TCAGGAATTGGTGTAGTATTACTTGAC 58.961 37.037 0.85 0.00 0.00 3.18
2398 2947 8.041323 CAGGAATTGGTGTAGTATTACTTGACT 58.959 37.037 0.85 0.00 0.00 3.41
2399 2948 8.603304 AGGAATTGGTGTAGTATTACTTGACTT 58.397 33.333 0.85 0.00 0.00 3.01
2400 2949 8.665685 GGAATTGGTGTAGTATTACTTGACTTG 58.334 37.037 0.85 0.00 0.00 3.16
2401 2950 8.561738 AATTGGTGTAGTATTACTTGACTTGG 57.438 34.615 0.85 0.00 0.00 3.61
2402 2951 6.675413 TGGTGTAGTATTACTTGACTTGGT 57.325 37.500 0.85 0.00 0.00 3.67
2403 2952 7.069877 TGGTGTAGTATTACTTGACTTGGTT 57.930 36.000 0.85 0.00 0.00 3.67
2404 2953 7.511268 TGGTGTAGTATTACTTGACTTGGTTT 58.489 34.615 0.85 0.00 0.00 3.27
2405 2954 7.994334 TGGTGTAGTATTACTTGACTTGGTTTT 59.006 33.333 0.85 0.00 0.00 2.43
2406 2955 8.843262 GGTGTAGTATTACTTGACTTGGTTTTT 58.157 33.333 0.85 0.00 0.00 1.94
2431 2980 9.823647 TTTCTGGAGTATCATCTACTCAATTTC 57.176 33.333 12.90 0.00 44.18 2.17
2554 3108 1.668628 CGGGCAAATTTTCCAAGTCCG 60.669 52.381 9.16 6.65 0.00 4.79
2606 3168 7.206687 TCATTTTGGTTGTTCAGGTATTTCAC 58.793 34.615 0.00 0.00 0.00 3.18
2658 3220 4.070552 GCCTCCGGAGTCGCAACT 62.071 66.667 29.25 0.00 38.88 3.16
2676 3238 2.614259 ACTGGAAGATCCGCATATCCT 58.386 47.619 0.00 0.00 40.17 3.24
2678 3240 1.625315 TGGAAGATCCGCATATCCTGG 59.375 52.381 0.00 0.00 40.17 4.45
2707 3271 0.101579 TTCTCACGCGTGTCACAAGA 59.898 50.000 35.74 27.32 0.00 3.02
2754 3318 2.023673 CAAAGGACCACACTGCAAAGA 58.976 47.619 0.00 0.00 0.00 2.52
2843 3409 3.347216 AGATCTACGCCAACAAGCAATT 58.653 40.909 0.00 0.00 0.00 2.32
2851 3417 3.986572 CGCCAACAAGCAATTAACATTCA 59.013 39.130 0.00 0.00 0.00 2.57
2852 3418 4.626604 CGCCAACAAGCAATTAACATTCAT 59.373 37.500 0.00 0.00 0.00 2.57
2857 3423 7.276218 CCAACAAGCAATTAACATTCATGTAGG 59.724 37.037 0.00 0.00 40.80 3.18
2867 3433 3.244422 ACATTCATGTAGGTGACACCGTT 60.244 43.478 18.93 5.28 42.17 4.44
2870 3436 2.565391 TCATGTAGGTGACACCGTTGAT 59.435 45.455 18.93 7.23 44.90 2.57
2879 3445 2.835156 TGACACCGTTGATATTGGGAGA 59.165 45.455 0.00 0.00 0.00 3.71
2882 3448 3.118738 ACACCGTTGATATTGGGAGACTC 60.119 47.826 0.00 0.00 0.00 3.36
2890 3456 4.901849 TGATATTGGGAGACTCGAGGAAAT 59.098 41.667 18.41 9.08 0.00 2.17
2891 3457 3.828875 ATTGGGAGACTCGAGGAAATC 57.171 47.619 18.41 4.94 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.795341 CATTCATCTCGTCATTTTTCTGATTTG 58.205 33.333 0.00 0.00 0.00 2.32
55 56 3.190079 CACCGTCATTCATCTCGTCATT 58.810 45.455 0.00 0.00 0.00 2.57
56 57 2.481969 CCACCGTCATTCATCTCGTCAT 60.482 50.000 0.00 0.00 0.00 3.06
69 70 4.612412 GACAACCGGCCACCGTCA 62.612 66.667 0.00 0.00 46.80 4.35
73 74 2.983592 CTTGGACAACCGGCCACC 60.984 66.667 0.00 0.25 39.42 4.61
85 86 1.301716 GGCGCACTCAAGTCTTGGA 60.302 57.895 10.83 0.00 0.00 3.53
92 93 2.159517 GGATTTACAAGGCGCACTCAAG 60.160 50.000 10.83 0.94 0.00 3.02
96 97 0.036765 TCGGATTTACAAGGCGCACT 60.037 50.000 10.83 0.02 0.00 4.40
97 98 0.800012 TTCGGATTTACAAGGCGCAC 59.200 50.000 10.83 0.00 0.00 5.34
139 140 2.565391 TCCAACTGAAAGGACATCGCTA 59.435 45.455 0.00 0.00 39.30 4.26
145 146 2.036387 TCGTCTCCAACTGAAAGGACA 58.964 47.619 0.00 0.00 39.30 4.02
149 150 2.135664 ACGTCGTCTCCAACTGAAAG 57.864 50.000 0.00 0.00 42.29 2.62
175 176 2.477754 CACAGACGTCACGTAGTAGTCA 59.522 50.000 19.50 0.00 41.61 3.41
176 177 2.159734 CCACAGACGTCACGTAGTAGTC 60.160 54.545 19.50 0.00 41.61 2.59
177 178 1.802960 CCACAGACGTCACGTAGTAGT 59.197 52.381 19.50 0.00 41.61 2.73
178 179 1.802960 ACCACAGACGTCACGTAGTAG 59.197 52.381 19.50 0.55 41.61 2.57
179 180 1.532437 CACCACAGACGTCACGTAGTA 59.468 52.381 19.50 0.00 41.61 1.82
193 194 4.001618 TGAGATTGACGAAATCACCACA 57.998 40.909 14.85 8.44 46.21 4.17
214 215 4.024556 CGAGAAACTGTGTCAGCAAATCTT 60.025 41.667 0.02 0.00 34.37 2.40
223 224 2.821546 CACTTCCGAGAAACTGTGTCA 58.178 47.619 0.02 0.00 0.00 3.58
229 230 2.613977 CCATGAGCACTTCCGAGAAACT 60.614 50.000 0.00 0.00 0.00 2.66
235 236 0.904865 ACTCCCATGAGCACTTCCGA 60.905 55.000 0.00 0.00 42.74 4.55
238 239 3.827008 TCATACTCCCATGAGCACTTC 57.173 47.619 0.00 0.00 42.74 3.01
249 250 0.388649 CAGGCGCGTATCATACTCCC 60.389 60.000 8.43 0.00 0.00 4.30
255 256 0.175760 AACTCACAGGCGCGTATCAT 59.824 50.000 8.43 0.00 0.00 2.45
265 266 6.650120 ACAGTTACCCATATAAACTCACAGG 58.350 40.000 0.00 0.00 31.21 4.00
271 272 7.722285 ACACACAAACAGTTACCCATATAAACT 59.278 33.333 0.00 0.00 33.82 2.66
279 280 1.746220 GCACACACAAACAGTTACCCA 59.254 47.619 0.00 0.00 0.00 4.51
280 281 1.746220 TGCACACACAAACAGTTACCC 59.254 47.619 0.00 0.00 0.00 3.69
285 286 0.248580 CGCATGCACACACAAACAGT 60.249 50.000 19.57 0.00 0.00 3.55
292 293 3.635734 GACGCTCGCATGCACACAC 62.636 63.158 19.57 0.69 0.00 3.82
310 311 3.302365 TTTCCCTCGGTACAAACGTAG 57.698 47.619 0.00 0.00 0.00 3.51
331 332 5.606348 TGCCTTATTGTGAACACCTTTTT 57.394 34.783 2.46 0.00 0.00 1.94
333 334 4.832266 TCATGCCTTATTGTGAACACCTTT 59.168 37.500 2.46 0.00 0.00 3.11
337 344 7.088589 ACTAATCATGCCTTATTGTGAACAC 57.911 36.000 0.00 0.00 0.00 3.32
396 403 0.683504 GAGAGACAGCCGGGTAAGGA 60.684 60.000 5.47 0.00 0.00 3.36
488 506 2.753452 TGTAGGAGATCAAGGACGTGAC 59.247 50.000 0.00 0.00 0.00 3.67
514 532 3.605634 TGATTGCAGCATTACCGTAGTT 58.394 40.909 0.00 0.00 0.00 2.24
617 635 5.504392 GCCCGGTTCGTGTAAAATAATTAG 58.496 41.667 0.00 0.00 0.00 1.73
639 657 2.041366 GAGCAAGGGAAATCGAGCGC 62.041 60.000 0.00 0.00 0.00 5.92
640 658 0.740868 TGAGCAAGGGAAATCGAGCG 60.741 55.000 0.00 0.00 0.00 5.03
641 659 0.729690 GTGAGCAAGGGAAATCGAGC 59.270 55.000 0.00 0.00 0.00 5.03
642 660 2.099141 TGTGAGCAAGGGAAATCGAG 57.901 50.000 0.00 0.00 0.00 4.04
643 661 2.027285 TCATGTGAGCAAGGGAAATCGA 60.027 45.455 0.00 0.00 0.00 3.59
651 669 2.359900 GTTAGGGTCATGTGAGCAAGG 58.640 52.381 13.49 0.00 43.82 3.61
857 880 0.676736 GGGATCGGAGCTCTGGTTAG 59.323 60.000 22.38 3.48 0.00 2.34
864 887 1.353091 AAATAGGGGGATCGGAGCTC 58.647 55.000 4.71 4.71 0.00 4.09
865 888 2.715763 TAAATAGGGGGATCGGAGCT 57.284 50.000 0.00 0.00 0.00 4.09
964 990 2.032681 GGTGCTCTGTGGGTGTCC 59.967 66.667 0.00 0.00 0.00 4.02
965 991 2.357517 CGGTGCTCTGTGGGTGTC 60.358 66.667 0.00 0.00 0.00 3.67
966 992 3.941188 CCGGTGCTCTGTGGGTGT 61.941 66.667 0.00 0.00 0.00 4.16
967 993 2.507110 CTACCGGTGCTCTGTGGGTG 62.507 65.000 19.93 0.00 32.29 4.61
970 996 0.034896 AAACTACCGGTGCTCTGTGG 59.965 55.000 19.93 0.00 0.00 4.17
971 997 1.148310 CAAACTACCGGTGCTCTGTG 58.852 55.000 19.93 3.82 0.00 3.66
979 1005 6.736519 GCCATTTTCTTTAACAAACTACCGGT 60.737 38.462 13.98 13.98 0.00 5.28
981 1007 5.341196 CGCCATTTTCTTTAACAAACTACCG 59.659 40.000 0.00 0.00 0.00 4.02
983 1009 5.118050 GGCGCCATTTTCTTTAACAAACTAC 59.882 40.000 24.80 0.00 0.00 2.73
989 1015 2.887783 TGAGGCGCCATTTTCTTTAACA 59.112 40.909 31.54 7.64 0.00 2.41
1060 1086 3.710722 CCAGAAGCTCGGCAGGGT 61.711 66.667 0.00 0.00 0.00 4.34
1064 1090 1.605058 GGAGTACCAGAAGCTCGGCA 61.605 60.000 0.00 0.00 35.97 5.69
1335 1367 1.423056 CGAGACACGTACCGGAGTC 59.577 63.158 9.46 8.03 36.69 3.36
1355 1387 2.546368 GACCGTGTAAGTGTGCAATGAA 59.454 45.455 0.00 0.00 0.00 2.57
1406 1478 2.260844 TTCCTTGCCCATCATCGATC 57.739 50.000 0.00 0.00 0.00 3.69
1407 1479 2.734755 TTTCCTTGCCCATCATCGAT 57.265 45.000 0.00 0.00 0.00 3.59
1408 1480 2.092484 TCATTTCCTTGCCCATCATCGA 60.092 45.455 0.00 0.00 0.00 3.59
1409 1481 2.033801 GTCATTTCCTTGCCCATCATCG 59.966 50.000 0.00 0.00 0.00 3.84
1411 1483 3.104519 TGTCATTTCCTTGCCCATCAT 57.895 42.857 0.00 0.00 0.00 2.45
1412 1484 2.601240 TGTCATTTCCTTGCCCATCA 57.399 45.000 0.00 0.00 0.00 3.07
1413 1485 2.101917 CCATGTCATTTCCTTGCCCATC 59.898 50.000 0.00 0.00 0.00 3.51
1414 1486 2.112998 CCATGTCATTTCCTTGCCCAT 58.887 47.619 0.00 0.00 0.00 4.00
1415 1487 1.076841 TCCATGTCATTTCCTTGCCCA 59.923 47.619 0.00 0.00 0.00 5.36
1416 1488 1.851304 TCCATGTCATTTCCTTGCCC 58.149 50.000 0.00 0.00 0.00 5.36
1417 1489 4.436332 GAAATCCATGTCATTTCCTTGCC 58.564 43.478 13.08 0.00 35.15 4.52
1421 1493 4.380867 GCAACGAAATCCATGTCATTTCCT 60.381 41.667 16.30 7.14 37.06 3.36
1440 1513 3.916776 GCTTCTGCTTCTGTAAATGCAAC 59.083 43.478 0.00 0.00 34.90 4.17
1536 1618 0.321122 CCTCCGTCTGCTTGAGCTTT 60.321 55.000 4.44 0.00 42.66 3.51
2156 2288 6.677913 ACTTTTACTCAACATGTTGGTATGC 58.322 36.000 32.54 0.00 40.78 3.14
2288 2831 4.142600 GGTGATACATCTGACAAACCAAGC 60.143 45.833 0.00 0.00 0.00 4.01
2300 2849 5.645067 CACTCAACATGTTGGTGATACATCT 59.355 40.000 33.71 14.41 44.04 2.90
2301 2850 5.643348 TCACTCAACATGTTGGTGATACATC 59.357 40.000 34.61 0.00 44.04 3.06
2302 2851 5.559770 TCACTCAACATGTTGGTGATACAT 58.440 37.500 34.61 16.48 44.04 2.29
2303 2852 4.967036 TCACTCAACATGTTGGTGATACA 58.033 39.130 34.61 23.64 44.04 2.29
2304 2853 6.500684 AATCACTCAACATGTTGGTGATAC 57.499 37.500 39.77 0.00 44.04 2.24
2305 2854 7.448161 AGAAAATCACTCAACATGTTGGTGATA 59.552 33.333 39.77 29.15 44.04 2.15
2306 2855 6.266103 AGAAAATCACTCAACATGTTGGTGAT 59.734 34.615 37.58 37.58 44.04 3.06
2307 2856 5.593909 AGAAAATCACTCAACATGTTGGTGA 59.406 36.000 37.07 37.07 42.67 4.02
2308 2857 5.835257 AGAAAATCACTCAACATGTTGGTG 58.165 37.500 32.55 32.55 40.78 4.17
2309 2858 7.581213 TTAGAAAATCACTCAACATGTTGGT 57.419 32.000 32.54 25.94 40.78 3.67
2310 2859 9.480053 AAATTAGAAAATCACTCAACATGTTGG 57.520 29.630 32.54 25.38 40.78 3.77
2317 2866 9.841880 GGGTAGAAAATTAGAAAATCACTCAAC 57.158 33.333 0.00 0.00 0.00 3.18
2318 2867 9.807921 AGGGTAGAAAATTAGAAAATCACTCAA 57.192 29.630 0.00 0.00 0.00 3.02
2319 2868 9.231297 CAGGGTAGAAAATTAGAAAATCACTCA 57.769 33.333 0.00 0.00 0.00 3.41
2320 2869 9.232473 ACAGGGTAGAAAATTAGAAAATCACTC 57.768 33.333 0.00 0.00 0.00 3.51
2321 2870 9.232473 GACAGGGTAGAAAATTAGAAAATCACT 57.768 33.333 0.00 0.00 0.00 3.41
2322 2871 8.459635 GGACAGGGTAGAAAATTAGAAAATCAC 58.540 37.037 0.00 0.00 0.00 3.06
2323 2872 8.390921 AGGACAGGGTAGAAAATTAGAAAATCA 58.609 33.333 0.00 0.00 0.00 2.57
2324 2873 8.678199 CAGGACAGGGTAGAAAATTAGAAAATC 58.322 37.037 0.00 0.00 0.00 2.17
2325 2874 7.122799 GCAGGACAGGGTAGAAAATTAGAAAAT 59.877 37.037 0.00 0.00 0.00 1.82
2326 2875 6.433093 GCAGGACAGGGTAGAAAATTAGAAAA 59.567 38.462 0.00 0.00 0.00 2.29
2327 2876 5.944007 GCAGGACAGGGTAGAAAATTAGAAA 59.056 40.000 0.00 0.00 0.00 2.52
2328 2877 5.013704 TGCAGGACAGGGTAGAAAATTAGAA 59.986 40.000 0.00 0.00 0.00 2.10
2329 2878 4.534500 TGCAGGACAGGGTAGAAAATTAGA 59.466 41.667 0.00 0.00 0.00 2.10
2330 2879 4.843728 TGCAGGACAGGGTAGAAAATTAG 58.156 43.478 0.00 0.00 0.00 1.73
2331 2880 4.919774 TGCAGGACAGGGTAGAAAATTA 57.080 40.909 0.00 0.00 0.00 1.40
2332 2881 3.806949 TGCAGGACAGGGTAGAAAATT 57.193 42.857 0.00 0.00 0.00 1.82
2333 2882 4.721776 TCTATGCAGGACAGGGTAGAAAAT 59.278 41.667 0.00 0.00 0.00 1.82
2334 2883 4.101114 TCTATGCAGGACAGGGTAGAAAA 58.899 43.478 0.00 0.00 0.00 2.29
2335 2884 3.719871 TCTATGCAGGACAGGGTAGAAA 58.280 45.455 0.00 0.00 0.00 2.52
2336 2885 3.398318 TCTATGCAGGACAGGGTAGAA 57.602 47.619 0.00 0.00 0.00 2.10
2337 2886 3.234353 CATCTATGCAGGACAGGGTAGA 58.766 50.000 0.00 0.00 0.00 2.59
2338 2887 2.968574 ACATCTATGCAGGACAGGGTAG 59.031 50.000 0.00 0.00 0.00 3.18
2339 2888 3.046283 ACATCTATGCAGGACAGGGTA 57.954 47.619 0.00 0.00 0.00 3.69
2340 2889 1.885049 ACATCTATGCAGGACAGGGT 58.115 50.000 0.00 0.00 0.00 4.34
2341 2890 2.569059 CAACATCTATGCAGGACAGGG 58.431 52.381 0.00 0.00 0.00 4.45
2342 2891 1.945394 GCAACATCTATGCAGGACAGG 59.055 52.381 0.00 0.00 43.29 4.00
2350 2899 2.473816 TCTACGCTGCAACATCTATGC 58.526 47.619 0.00 0.00 44.08 3.14
2351 2900 4.301628 TGATCTACGCTGCAACATCTATG 58.698 43.478 0.00 0.00 0.00 2.23
2352 2901 4.554292 CTGATCTACGCTGCAACATCTAT 58.446 43.478 0.00 0.00 0.00 1.98
2353 2902 3.243535 CCTGATCTACGCTGCAACATCTA 60.244 47.826 0.00 0.00 0.00 1.98
2354 2903 2.482664 CCTGATCTACGCTGCAACATCT 60.483 50.000 0.00 0.00 0.00 2.90
2355 2904 1.863454 CCTGATCTACGCTGCAACATC 59.137 52.381 0.00 0.00 0.00 3.06
2356 2905 1.482182 TCCTGATCTACGCTGCAACAT 59.518 47.619 0.00 0.00 0.00 2.71
2357 2906 0.894835 TCCTGATCTACGCTGCAACA 59.105 50.000 0.00 0.00 0.00 3.33
2358 2907 2.010145 TTCCTGATCTACGCTGCAAC 57.990 50.000 0.00 0.00 0.00 4.17
2359 2908 2.938451 CAATTCCTGATCTACGCTGCAA 59.062 45.455 0.00 0.00 0.00 4.08
2360 2909 2.554142 CAATTCCTGATCTACGCTGCA 58.446 47.619 0.00 0.00 0.00 4.41
2361 2910 1.869767 CCAATTCCTGATCTACGCTGC 59.130 52.381 0.00 0.00 0.00 5.25
2362 2911 2.868583 CACCAATTCCTGATCTACGCTG 59.131 50.000 0.00 0.00 0.00 5.18
2363 2912 2.501723 ACACCAATTCCTGATCTACGCT 59.498 45.455 0.00 0.00 0.00 5.07
2364 2913 2.906354 ACACCAATTCCTGATCTACGC 58.094 47.619 0.00 0.00 0.00 4.42
2365 2914 5.263968 ACTACACCAATTCCTGATCTACG 57.736 43.478 0.00 0.00 0.00 3.51
2366 2915 9.694137 GTAATACTACACCAATTCCTGATCTAC 57.306 37.037 0.00 0.00 0.00 2.59
2367 2916 9.656323 AGTAATACTACACCAATTCCTGATCTA 57.344 33.333 0.00 0.00 0.00 1.98
2368 2917 8.554490 AGTAATACTACACCAATTCCTGATCT 57.446 34.615 0.00 0.00 0.00 2.75
2369 2918 9.046296 CAAGTAATACTACACCAATTCCTGATC 57.954 37.037 0.00 0.00 0.00 2.92
2370 2919 8.768397 TCAAGTAATACTACACCAATTCCTGAT 58.232 33.333 0.00 0.00 0.00 2.90
2371 2920 8.038944 GTCAAGTAATACTACACCAATTCCTGA 58.961 37.037 0.00 0.00 0.00 3.86
2372 2921 8.041323 AGTCAAGTAATACTACACCAATTCCTG 58.959 37.037 0.00 0.00 0.00 3.86
2373 2922 8.147244 AGTCAAGTAATACTACACCAATTCCT 57.853 34.615 0.00 0.00 0.00 3.36
2374 2923 8.665685 CAAGTCAAGTAATACTACACCAATTCC 58.334 37.037 0.00 0.00 0.00 3.01
2375 2924 8.665685 CCAAGTCAAGTAATACTACACCAATTC 58.334 37.037 0.00 0.00 0.00 2.17
2376 2925 8.161425 ACCAAGTCAAGTAATACTACACCAATT 58.839 33.333 0.00 0.00 0.00 2.32
2377 2926 7.686434 ACCAAGTCAAGTAATACTACACCAAT 58.314 34.615 0.00 0.00 0.00 3.16
2378 2927 7.069877 ACCAAGTCAAGTAATACTACACCAA 57.930 36.000 0.00 0.00 0.00 3.67
2379 2928 6.675413 ACCAAGTCAAGTAATACTACACCA 57.325 37.500 0.00 0.00 0.00 4.17
2380 2929 7.974482 AAACCAAGTCAAGTAATACTACACC 57.026 36.000 0.00 0.00 0.00 4.16
2405 2954 9.823647 GAAATTGAGTAGATGATACTCCAGAAA 57.176 33.333 11.44 1.60 42.32 2.52
2406 2955 8.981659 TGAAATTGAGTAGATGATACTCCAGAA 58.018 33.333 11.44 1.90 42.32 3.02
2407 2956 8.539117 TGAAATTGAGTAGATGATACTCCAGA 57.461 34.615 11.44 0.65 42.32 3.86
2408 2957 7.384660 GCTGAAATTGAGTAGATGATACTCCAG 59.615 40.741 11.44 11.20 42.32 3.86
2431 2980 2.949106 CAACTTGTCGGGCAGCTG 59.051 61.111 10.11 10.11 0.00 4.24
2554 3108 4.261801 ACCATGCACCTAACATGTTACTC 58.738 43.478 14.35 4.81 42.74 2.59
2606 3168 5.666969 TCAAACACATAGAAACGACAAGG 57.333 39.130 0.00 0.00 0.00 3.61
2658 3220 1.625315 CCAGGATATGCGGATCTTCCA 59.375 52.381 17.42 0.00 35.91 3.53
2688 3250 0.101579 TCTTGTGACACGCGTGAGAA 59.898 50.000 42.94 25.21 0.00 2.87
2689 3251 0.594028 GTCTTGTGACACGCGTGAGA 60.594 55.000 42.94 30.56 42.48 3.27
2695 3259 1.563173 GTTCGGTCTTGTGACACGC 59.437 57.895 0.22 0.00 44.61 5.34
2696 3260 0.528901 TGGTTCGGTCTTGTGACACG 60.529 55.000 0.22 0.00 44.61 4.49
2698 3262 1.658994 GTTGGTTCGGTCTTGTGACA 58.341 50.000 0.00 0.00 44.61 3.58
2707 3271 1.614903 TCTACATCACGTTGGTTCGGT 59.385 47.619 0.00 0.00 34.94 4.69
2744 3308 1.758783 GACGGCTTTTCTTTGCAGTG 58.241 50.000 0.00 0.00 37.69 3.66
2843 3409 4.020928 ACGGTGTCACCTACATGAATGTTA 60.021 41.667 19.82 0.00 41.10 2.41
2851 3417 5.116180 CAATATCAACGGTGTCACCTACAT 58.884 41.667 19.82 8.72 41.10 2.29
2852 3418 4.500127 CAATATCAACGGTGTCACCTACA 58.500 43.478 19.82 1.64 35.66 2.74
2857 3423 2.936498 CTCCCAATATCAACGGTGTCAC 59.064 50.000 0.00 0.00 0.00 3.67
2867 3433 3.595190 TCCTCGAGTCTCCCAATATCA 57.405 47.619 12.31 0.00 0.00 2.15
2870 3436 4.939052 GATTTCCTCGAGTCTCCCAATA 57.061 45.455 12.31 0.00 0.00 1.90
2890 3456 1.712018 CTACGCACCGATCAGACCGA 61.712 60.000 0.00 0.00 0.00 4.69
2891 3457 1.298413 CTACGCACCGATCAGACCG 60.298 63.158 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.