Multiple sequence alignment - TraesCS7A01G082800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G082800 chr7A 100.000 4854 0 0 1 4854 47798946 47794093 0.000000e+00 8964.0
1 TraesCS7A01G082800 chr7A 92.668 4078 129 67 602 4554 47694371 47698403 0.000000e+00 5718.0
2 TraesCS7A01G082800 chr7A 99.670 606 2 0 1 606 47693739 47694344 0.000000e+00 1109.0
3 TraesCS7A01G082800 chr7A 89.013 628 47 9 1 606 47823494 47822867 0.000000e+00 758.0
4 TraesCS7A01G082800 chr7A 96.386 83 3 0 4617 4699 47698410 47698492 2.360000e-28 137.0
5 TraesCS7A01G082800 chr7D 89.776 2944 186 65 1031 3904 45657261 45654363 0.000000e+00 3663.0
6 TraesCS7A01G082800 chr7D 85.146 478 27 12 1031 1470 45569570 45570041 2.660000e-122 449.0
7 TraesCS7A01G082800 chr7D 95.279 233 11 0 1800 2032 45570444 45570676 2.130000e-98 370.0
8 TraesCS7A01G082800 chr7D 88.312 308 15 13 1466 1756 45570123 45570426 2.780000e-92 350.0
9 TraesCS7A01G082800 chr7D 85.606 132 14 4 3774 3903 45570790 45570918 3.050000e-27 134.0
10 TraesCS7A01G082800 chr4A 93.155 2206 125 11 1586 3772 658225456 658223258 0.000000e+00 3214.0
11 TraesCS7A01G082800 chr4A 89.907 1833 115 39 2125 3904 657889102 657890917 0.000000e+00 2296.0
12 TraesCS7A01G082800 chr4A 87.142 1081 78 26 1015 2058 657887693 657888749 0.000000e+00 1170.0
13 TraesCS7A01G082800 chr4A 86.572 633 56 11 1 606 657885180 657885810 0.000000e+00 671.0
14 TraesCS7A01G082800 chr4A 85.791 556 55 15 4152 4699 658222750 658222211 7.050000e-158 568.0
15 TraesCS7A01G082800 chr4A 89.167 360 32 5 1 355 658227968 658227611 4.460000e-120 442.0
16 TraesCS7A01G082800 chr4A 79.151 518 30 28 950 1410 658226071 658225575 2.210000e-73 287.0
17 TraesCS7A01G082800 chr4A 79.915 234 23 8 397 606 658227612 658227379 3.030000e-32 150.0
18 TraesCS7A01G082800 chr5B 88.471 1700 155 19 2086 3770 305055635 305053962 0.000000e+00 2015.0
19 TraesCS7A01G082800 chr5B 84.486 593 66 19 1504 2084 305056353 305055775 3.280000e-156 562.0
20 TraesCS7A01G082800 chr5B 88.679 53 6 0 748 800 636986317 636986265 1.130000e-06 65.8
21 TraesCS7A01G082800 chr5A 88.383 1472 137 17 2312 3770 358049410 358047960 0.000000e+00 1740.0
22 TraesCS7A01G082800 chr5A 85.546 595 54 14 1504 2084 358050527 358049951 1.160000e-165 593.0
23 TraesCS7A01G082800 chr5A 90.446 314 27 1 2086 2399 358049811 358049501 1.260000e-110 411.0
24 TraesCS7A01G082800 chr5A 86.047 86 3 2 1074 1150 358051012 358050927 3.110000e-12 84.2
25 TraesCS7A01G082800 chr5D 88.315 1472 138 14 2312 3770 269342205 269340755 0.000000e+00 1735.0
26 TraesCS7A01G082800 chr5D 85.787 591 56 12 1504 2084 269343229 269342657 6.950000e-168 601.0
27 TraesCS7A01G082800 chr5D 90.446 314 27 1 2086 2399 269342517 269342207 1.260000e-110 411.0
28 TraesCS7A01G082800 chr5D 84.706 85 4 2 1074 1149 269343691 269343607 5.210000e-10 76.8
29 TraesCS7A01G082800 chr2B 89.560 613 49 7 1586 2189 275457196 275456590 0.000000e+00 763.0
30 TraesCS7A01G082800 chr3B 88.525 61 7 0 748 808 830001529 830001589 1.870000e-09 75.0
31 TraesCS7A01G082800 chr1D 86.885 61 8 0 748 808 5016615 5016555 8.720000e-08 69.4
32 TraesCS7A01G082800 chr1A 93.478 46 3 0 748 793 103324505 103324550 8.720000e-08 69.4
33 TraesCS7A01G082800 chr4D 86.885 61 7 1 748 808 338012789 338012730 3.140000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G082800 chr7A 47794093 47798946 4853 True 8964.000000 8964 100.000000 1 4854 1 chr7A.!!$R1 4853
1 TraesCS7A01G082800 chr7A 47693739 47698492 4753 False 2321.333333 5718 96.241333 1 4699 3 chr7A.!!$F1 4698
2 TraesCS7A01G082800 chr7A 47822867 47823494 627 True 758.000000 758 89.013000 1 606 1 chr7A.!!$R2 605
3 TraesCS7A01G082800 chr7D 45654363 45657261 2898 True 3663.000000 3663 89.776000 1031 3904 1 chr7D.!!$R1 2873
4 TraesCS7A01G082800 chr7D 45569570 45570918 1348 False 325.750000 449 88.585750 1031 3903 4 chr7D.!!$F1 2872
5 TraesCS7A01G082800 chr4A 657885180 657890917 5737 False 1379.000000 2296 87.873667 1 3904 3 chr4A.!!$F1 3903
6 TraesCS7A01G082800 chr4A 658222211 658227968 5757 True 932.200000 3214 85.435800 1 4699 5 chr4A.!!$R1 4698
7 TraesCS7A01G082800 chr5B 305053962 305056353 2391 True 1288.500000 2015 86.478500 1504 3770 2 chr5B.!!$R2 2266
8 TraesCS7A01G082800 chr5A 358047960 358051012 3052 True 707.050000 1740 87.605500 1074 3770 4 chr5A.!!$R1 2696
9 TraesCS7A01G082800 chr5D 269340755 269343691 2936 True 705.950000 1735 87.313500 1074 3770 4 chr5D.!!$R1 2696
10 TraesCS7A01G082800 chr2B 275456590 275457196 606 True 763.000000 763 89.560000 1586 2189 1 chr2B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 3046 4.209866 GGCGCCCCAATCTCCCAT 62.210 66.667 18.11 0.0 0.0 4.00 F
2488 5355 0.033208 GGAAGGATGGGCATCAACCA 60.033 55.000 7.99 0.0 40.4 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2504 5371 1.287739 TGGAATCCTGGCCTTTTAGGG 59.712 52.381 3.32 0.0 35.37 3.53 R
4389 7443 0.114954 ATGTTGTGGGCTTCCATGGT 59.885 50.000 12.58 0.0 43.38 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
976 3046 4.209866 GGCGCCCCAATCTCCCAT 62.210 66.667 18.11 0.00 0.00 4.00
1006 3088 0.829990 TCAACTCAGCGCCATGGATA 59.170 50.000 18.40 0.00 0.00 2.59
1195 3364 3.147595 CAGTGGATCCGCCTCCGA 61.148 66.667 21.82 0.00 38.21 4.55
1330 3597 6.447162 TCTTATACTGTTCATAGCGATGTGG 58.553 40.000 6.70 0.00 34.41 4.17
1341 3609 5.753438 TCATAGCGATGTGGTTATGTTTCTC 59.247 40.000 6.70 0.00 34.09 2.87
1363 3631 2.927553 ATTTGCGCAAGTGATTCCTC 57.072 45.000 23.68 0.00 41.68 3.71
1515 3895 8.432013 TGAAGATGATAATTACATAGCTGGTGT 58.568 33.333 10.80 10.80 0.00 4.16
2159 4851 4.007457 CCAGCATGTTCCCTGGTG 57.993 61.111 8.51 0.00 42.87 4.17
2382 5249 5.140454 ACTTTTGGTTCATCCTTTGCTAGT 58.860 37.500 0.00 0.00 37.07 2.57
2457 5324 0.598065 GTCGCTTGCAAAATCCACCT 59.402 50.000 0.00 0.00 0.00 4.00
2460 5327 2.102252 TCGCTTGCAAAATCCACCTTTT 59.898 40.909 0.00 0.00 0.00 2.27
2470 5337 7.174599 TGCAAAATCCACCTTTTATTTTGATGG 59.825 33.333 18.79 0.00 46.32 3.51
2488 5355 0.033208 GGAAGGATGGGCATCAACCA 60.033 55.000 7.99 0.00 40.40 3.67
2504 5371 1.172812 ACCAAACCAAGCTCCTTCGC 61.173 55.000 0.00 0.00 0.00 4.70
2678 5545 8.673626 ACTTAATAGTTTGATTTGATTGTGCG 57.326 30.769 0.00 0.00 0.00 5.34
2696 5563 2.890311 TGCGGAATCAATTTGGTGAAGT 59.110 40.909 0.00 0.00 0.00 3.01
2856 5723 0.038744 AGCCATGGTTTGCTGCTACT 59.961 50.000 14.67 0.00 36.23 2.57
3152 6023 9.479549 AAAAAGATAGGCAAGAAATGATTAGGA 57.520 29.630 0.00 0.00 0.00 2.94
3193 6064 3.566130 GCCCAAGCTCAAGATGAGT 57.434 52.632 8.97 0.00 45.94 3.41
3203 6074 5.923204 AGCTCAAGATGAGTAACCTTATGG 58.077 41.667 8.97 0.00 45.94 2.74
3304 6175 0.647410 CTCATGTCGACCGCAACATC 59.353 55.000 14.12 0.00 33.92 3.06
3341 6215 1.315981 ATCTGAGCGCCGTGAGAAGA 61.316 55.000 2.29 0.00 0.00 2.87
3342 6216 1.080501 CTGAGCGCCGTGAGAAGAA 60.081 57.895 2.29 0.00 0.00 2.52
3343 6217 1.075425 CTGAGCGCCGTGAGAAGAAG 61.075 60.000 2.29 0.00 0.00 2.85
3437 6320 0.041839 GCACAGTCAGACACGCTTTG 60.042 55.000 2.66 0.00 0.00 2.77
3446 6329 1.134521 AGACACGCTTTGAAGTGGACA 60.135 47.619 8.93 0.00 42.25 4.02
3451 6334 2.290641 ACGCTTTGAAGTGGACATGAAC 59.709 45.455 0.00 0.00 40.75 3.18
3475 6358 0.391597 GAGACAACCGGTTGACTGGA 59.608 55.000 42.69 0.00 45.36 3.86
3600 6486 2.045926 AGTTGGTGGCGAGGATGC 60.046 61.111 0.00 0.00 0.00 3.91
3650 6551 2.288825 GCATTAGTATGGCGAGGTAGCA 60.289 50.000 0.00 0.00 39.27 3.49
3734 6635 4.083110 CCAAGAAGGTGTTTGTAGATGCTG 60.083 45.833 0.00 0.00 0.00 4.41
3752 6653 2.037251 GCTGAAGTTCCACACTACTGGA 59.963 50.000 0.00 0.00 38.66 3.86
3763 6664 1.072331 CACTACTGGAACCTGGCTGTT 59.928 52.381 0.00 0.00 0.00 3.16
3765 6666 3.055094 CACTACTGGAACCTGGCTGTTAT 60.055 47.826 0.00 0.00 0.00 1.89
3856 6792 6.650807 TGTCATTTTCAGACTGTAGATGAACC 59.349 38.462 14.35 6.58 36.94 3.62
3863 6799 0.914551 CTGTAGATGAACCGAACGCG 59.085 55.000 3.53 3.53 37.24 6.01
3928 6893 4.191033 TGTGCAGGCCTTGAATATTTTG 57.809 40.909 0.00 0.00 0.00 2.44
3959 6927 9.866936 TTGCGAATTATAATTTATGGACGTTAC 57.133 29.630 11.92 0.00 0.00 2.50
3960 6928 9.043079 TGCGAATTATAATTTATGGACGTTACA 57.957 29.630 11.92 0.00 0.00 2.41
3975 6943 3.118775 ACGTTACATAAGATGCCAGCTCA 60.119 43.478 0.00 0.00 0.00 4.26
3982 6950 6.125029 ACATAAGATGCCAGCTCAATAAAGT 58.875 36.000 0.00 0.00 0.00 2.66
3990 6958 5.885352 TGCCAGCTCAATAAAGTTTGCTATA 59.115 36.000 0.00 0.00 0.00 1.31
4090 7117 1.203237 ACCCCAAAGTTTTGCAGCTT 58.797 45.000 0.00 0.00 36.86 3.74
4231 7283 2.594592 GCCCTTGTTCGTGCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
4250 7302 5.147330 TGGTGATCTCATTAACGAACACT 57.853 39.130 0.00 0.00 34.55 3.55
4254 7306 3.678056 TCTCATTAACGAACACTGGCT 57.322 42.857 0.00 0.00 0.00 4.75
4331 7384 1.306482 CCCTCCTTGCCTCTCCTGA 60.306 63.158 0.00 0.00 0.00 3.86
4366 7420 6.121776 TCCACAATGGAGTTATACTTGTGT 57.878 37.500 11.43 0.00 42.67 3.72
4367 7421 5.937540 TCCACAATGGAGTTATACTTGTGTG 59.062 40.000 11.43 0.00 42.67 3.82
4389 7443 3.529314 TACGATTGCGGCCGCCTA 61.529 61.111 44.42 32.90 43.17 3.93
4459 7518 2.493035 TGTGCGATGACAGTGTCAATT 58.507 42.857 28.70 14.45 45.96 2.32
4460 7519 3.658709 TGTGCGATGACAGTGTCAATTA 58.341 40.909 28.70 13.27 45.96 1.40
4461 7520 3.431912 TGTGCGATGACAGTGTCAATTAC 59.568 43.478 28.70 22.53 45.96 1.89
4514 7574 0.543277 AAGGCGGCAGAATCTCATCA 59.457 50.000 13.08 0.00 0.00 3.07
4547 7607 1.205417 CCGGCTCAAAATCCAGCATTT 59.795 47.619 0.00 0.00 37.38 2.32
4566 7626 6.056236 GCATTTGGGGTGGTTAAAACTTAAA 58.944 36.000 0.00 0.00 0.00 1.52
4569 7629 7.678207 TTTGGGGTGGTTAAAACTTAAAGAT 57.322 32.000 0.00 0.00 0.00 2.40
4571 7631 5.776208 TGGGGTGGTTAAAACTTAAAGATCC 59.224 40.000 0.00 0.00 0.00 3.36
4573 7633 6.294899 GGGGTGGTTAAAACTTAAAGATCCAC 60.295 42.308 0.00 0.00 41.08 4.02
4575 7635 7.666804 GGGTGGTTAAAACTTAAAGATCCACTA 59.333 37.037 0.00 0.00 41.40 2.74
4576 7636 9.239551 GGTGGTTAAAACTTAAAGATCCACTAT 57.760 33.333 0.00 0.00 41.40 2.12
4594 7654 5.338056 CCACTATATAATGTACCACCGCCAT 60.338 44.000 0.00 0.00 0.00 4.40
4637 7697 0.311790 CAAGTCATTGCCGCAACACT 59.688 50.000 8.25 10.58 0.00 3.55
4699 7759 0.456312 GAGCTCTACAACGACGGTGG 60.456 60.000 18.62 0.00 0.00 4.61
4700 7760 1.445582 GCTCTACAACGACGGTGGG 60.446 63.158 18.62 9.69 0.00 4.61
4701 7761 1.962144 CTCTACAACGACGGTGGGT 59.038 57.895 18.62 0.00 0.00 4.51
4702 7762 0.109412 CTCTACAACGACGGTGGGTC 60.109 60.000 18.62 0.00 42.48 4.46
4703 7763 1.080298 CTACAACGACGGTGGGTCC 60.080 63.158 18.62 0.00 42.99 4.46
4704 7764 1.808531 CTACAACGACGGTGGGTCCA 61.809 60.000 18.62 0.00 42.99 4.02
4705 7765 2.086251 TACAACGACGGTGGGTCCAC 62.086 60.000 18.62 11.47 42.99 4.02
4713 7773 3.781760 GTGGGTCCACACCGTCTA 58.218 61.111 14.69 0.00 44.91 2.59
4714 7774 2.283824 GTGGGTCCACACCGTCTAT 58.716 57.895 14.69 0.00 44.91 1.98
4715 7775 0.611714 GTGGGTCCACACCGTCTATT 59.388 55.000 14.69 0.00 44.91 1.73
4716 7776 1.002773 GTGGGTCCACACCGTCTATTT 59.997 52.381 14.69 0.00 44.91 1.40
4717 7777 1.276989 TGGGTCCACACCGTCTATTTC 59.723 52.381 0.00 0.00 44.91 2.17
4718 7778 1.636988 GGTCCACACCGTCTATTTCG 58.363 55.000 0.00 0.00 31.06 3.46
4719 7779 1.067354 GGTCCACACCGTCTATTTCGT 60.067 52.381 0.00 0.00 31.06 3.85
4720 7780 2.257034 GTCCACACCGTCTATTTCGTC 58.743 52.381 0.00 0.00 0.00 4.20
4721 7781 1.135603 TCCACACCGTCTATTTCGTCG 60.136 52.381 0.00 0.00 0.00 5.12
4722 7782 1.401931 CCACACCGTCTATTTCGTCGT 60.402 52.381 0.00 0.00 0.00 4.34
4723 7783 2.322161 CACACCGTCTATTTCGTCGTT 58.678 47.619 0.00 0.00 0.00 3.85
4724 7784 2.727798 CACACCGTCTATTTCGTCGTTT 59.272 45.455 0.00 0.00 0.00 3.60
4725 7785 3.182972 CACACCGTCTATTTCGTCGTTTT 59.817 43.478 0.00 0.00 0.00 2.43
4726 7786 3.182972 ACACCGTCTATTTCGTCGTTTTG 59.817 43.478 0.00 0.00 0.00 2.44
4727 7787 2.156310 ACCGTCTATTTCGTCGTTTTGC 59.844 45.455 0.00 0.00 0.00 3.68
4728 7788 2.473376 CCGTCTATTTCGTCGTTTTGCC 60.473 50.000 0.00 0.00 0.00 4.52
4729 7789 2.473376 CGTCTATTTCGTCGTTTTGCCC 60.473 50.000 0.00 0.00 0.00 5.36
4730 7790 2.740447 GTCTATTTCGTCGTTTTGCCCT 59.260 45.455 0.00 0.00 0.00 5.19
4731 7791 3.187842 GTCTATTTCGTCGTTTTGCCCTT 59.812 43.478 0.00 0.00 0.00 3.95
4732 7792 2.415697 ATTTCGTCGTTTTGCCCTTG 57.584 45.000 0.00 0.00 0.00 3.61
4733 7793 1.096416 TTTCGTCGTTTTGCCCTTGT 58.904 45.000 0.00 0.00 0.00 3.16
4734 7794 0.378962 TTCGTCGTTTTGCCCTTGTG 59.621 50.000 0.00 0.00 0.00 3.33
4735 7795 1.657181 CGTCGTTTTGCCCTTGTGC 60.657 57.895 0.00 0.00 0.00 4.57
4736 7796 1.435515 GTCGTTTTGCCCTTGTGCA 59.564 52.632 0.00 0.00 40.07 4.57
4752 7812 3.310303 GTGCAACAACAGCGAGATATC 57.690 47.619 0.00 0.00 36.32 1.63
4753 7813 2.030946 GTGCAACAACAGCGAGATATCC 59.969 50.000 0.00 0.00 36.32 2.59
4754 7814 1.599542 GCAACAACAGCGAGATATCCC 59.400 52.381 0.00 0.00 0.00 3.85
4755 7815 2.213499 CAACAACAGCGAGATATCCCC 58.787 52.381 0.00 0.00 0.00 4.81
4756 7816 1.794714 ACAACAGCGAGATATCCCCT 58.205 50.000 0.00 0.00 0.00 4.79
4757 7817 1.689273 ACAACAGCGAGATATCCCCTC 59.311 52.381 0.00 0.00 0.00 4.30
4762 7822 1.210413 CGAGATATCCCCTCGTGCG 59.790 63.158 0.00 0.00 45.89 5.34
4763 7823 1.587054 GAGATATCCCCTCGTGCGG 59.413 63.158 0.00 0.00 0.00 5.69
4764 7824 1.152525 AGATATCCCCTCGTGCGGT 60.153 57.895 0.00 0.00 0.00 5.68
4765 7825 1.179814 AGATATCCCCTCGTGCGGTC 61.180 60.000 0.00 0.00 0.00 4.79
4766 7826 1.456892 ATATCCCCTCGTGCGGTCA 60.457 57.895 0.00 0.00 0.00 4.02
4767 7827 0.832135 ATATCCCCTCGTGCGGTCAT 60.832 55.000 0.00 0.00 0.00 3.06
4768 7828 1.744320 TATCCCCTCGTGCGGTCATG 61.744 60.000 0.00 0.00 0.00 3.07
4769 7829 4.082523 CCCCTCGTGCGGTCATGT 62.083 66.667 0.00 0.00 0.00 3.21
4770 7830 2.717044 CCCCTCGTGCGGTCATGTA 61.717 63.158 0.00 0.00 0.00 2.29
4771 7831 1.441729 CCCTCGTGCGGTCATGTAT 59.558 57.895 0.00 0.00 0.00 2.29
4772 7832 0.179084 CCCTCGTGCGGTCATGTATT 60.179 55.000 0.00 0.00 0.00 1.89
4773 7833 1.651987 CCTCGTGCGGTCATGTATTT 58.348 50.000 0.00 0.00 0.00 1.40
4774 7834 1.593006 CCTCGTGCGGTCATGTATTTC 59.407 52.381 0.00 0.00 0.00 2.17
4775 7835 1.255342 CTCGTGCGGTCATGTATTTCG 59.745 52.381 0.00 0.00 0.00 3.46
4776 7836 0.996462 CGTGCGGTCATGTATTTCGT 59.004 50.000 0.00 0.00 0.00 3.85
4777 7837 1.392168 CGTGCGGTCATGTATTTCGTT 59.608 47.619 0.00 0.00 0.00 3.85
4778 7838 2.769376 GTGCGGTCATGTATTTCGTTG 58.231 47.619 0.00 0.00 0.00 4.10
4779 7839 1.129624 TGCGGTCATGTATTTCGTTGC 59.870 47.619 0.00 0.00 0.00 4.17
4780 7840 1.396996 GCGGTCATGTATTTCGTTGCT 59.603 47.619 0.00 0.00 0.00 3.91
4781 7841 2.536928 GCGGTCATGTATTTCGTTGCTC 60.537 50.000 0.00 0.00 0.00 4.26
4782 7842 2.930040 CGGTCATGTATTTCGTTGCTCT 59.070 45.455 0.00 0.00 0.00 4.09
4783 7843 3.370978 CGGTCATGTATTTCGTTGCTCTT 59.629 43.478 0.00 0.00 0.00 2.85
4784 7844 4.142902 CGGTCATGTATTTCGTTGCTCTTT 60.143 41.667 0.00 0.00 0.00 2.52
4785 7845 5.324697 GGTCATGTATTTCGTTGCTCTTTC 58.675 41.667 0.00 0.00 0.00 2.62
4786 7846 5.324697 GTCATGTATTTCGTTGCTCTTTCC 58.675 41.667 0.00 0.00 0.00 3.13
4787 7847 4.092821 TCATGTATTTCGTTGCTCTTTCCG 59.907 41.667 0.00 0.00 0.00 4.30
4788 7848 2.158841 TGTATTTCGTTGCTCTTTCCGC 59.841 45.455 0.00 0.00 0.00 5.54
4789 7849 1.234821 ATTTCGTTGCTCTTTCCGCA 58.765 45.000 0.00 0.00 35.22 5.69
4790 7850 0.306533 TTTCGTTGCTCTTTCCGCAC 59.693 50.000 0.00 0.00 37.07 5.34
4791 7851 0.812014 TTCGTTGCTCTTTCCGCACA 60.812 50.000 0.00 0.00 37.07 4.57
4792 7852 0.602638 TCGTTGCTCTTTCCGCACAT 60.603 50.000 0.00 0.00 37.07 3.21
4793 7853 0.238289 CGTTGCTCTTTCCGCACATT 59.762 50.000 0.00 0.00 37.07 2.71
4794 7854 1.689959 GTTGCTCTTTCCGCACATTG 58.310 50.000 0.00 0.00 37.07 2.82
4795 7855 0.039256 TTGCTCTTTCCGCACATTGC 60.039 50.000 0.00 0.00 40.69 3.56
4796 7856 1.153958 GCTCTTTCCGCACATTGCC 60.154 57.895 0.00 0.00 41.12 4.52
4797 7857 1.589716 GCTCTTTCCGCACATTGCCT 61.590 55.000 0.00 0.00 41.12 4.75
4798 7858 0.449388 CTCTTTCCGCACATTGCCTC 59.551 55.000 0.00 0.00 41.12 4.70
4799 7859 0.960364 TCTTTCCGCACATTGCCTCC 60.960 55.000 0.00 0.00 41.12 4.30
4800 7860 2.257286 CTTTCCGCACATTGCCTCCG 62.257 60.000 0.00 0.00 41.12 4.63
4801 7861 3.545124 TTCCGCACATTGCCTCCGT 62.545 57.895 0.00 0.00 41.12 4.69
4802 7862 3.803082 CCGCACATTGCCTCCGTG 61.803 66.667 0.00 0.00 41.12 4.94
4803 7863 2.741985 CGCACATTGCCTCCGTGA 60.742 61.111 0.00 0.00 41.12 4.35
4804 7864 2.108514 CGCACATTGCCTCCGTGAT 61.109 57.895 0.00 0.00 41.12 3.06
4805 7865 1.647545 CGCACATTGCCTCCGTGATT 61.648 55.000 0.00 0.00 41.12 2.57
4806 7866 0.099436 GCACATTGCCTCCGTGATTC 59.901 55.000 0.00 0.00 37.42 2.52
4807 7867 0.374758 CACATTGCCTCCGTGATTCG 59.625 55.000 0.00 0.00 39.52 3.34
4808 7868 1.353103 CATTGCCTCCGTGATTCGC 59.647 57.895 0.00 0.00 38.35 4.70
4809 7869 1.091771 CATTGCCTCCGTGATTCGCT 61.092 55.000 0.00 0.00 38.35 4.93
4810 7870 0.464036 ATTGCCTCCGTGATTCGCTA 59.536 50.000 0.00 0.00 38.35 4.26
4811 7871 0.179111 TTGCCTCCGTGATTCGCTAG 60.179 55.000 0.00 0.00 38.35 3.42
4812 7872 1.300233 GCCTCCGTGATTCGCTAGG 60.300 63.158 9.84 9.84 41.18 3.02
4813 7873 2.017559 GCCTCCGTGATTCGCTAGGT 62.018 60.000 13.74 0.00 40.71 3.08
4814 7874 0.030908 CCTCCGTGATTCGCTAGGTC 59.969 60.000 7.12 0.00 36.83 3.85
4815 7875 0.317103 CTCCGTGATTCGCTAGGTCG 60.317 60.000 0.00 0.00 38.35 4.79
4816 7876 1.299165 CCGTGATTCGCTAGGTCGG 60.299 63.158 0.00 0.00 38.35 4.79
4817 7877 1.944676 CGTGATTCGCTAGGTCGGC 60.945 63.158 0.00 0.00 0.00 5.54
4818 7878 1.437986 GTGATTCGCTAGGTCGGCT 59.562 57.895 0.00 0.00 0.00 5.52
4819 7879 0.595310 GTGATTCGCTAGGTCGGCTC 60.595 60.000 0.00 0.00 0.00 4.70
4820 7880 1.007154 GATTCGCTAGGTCGGCTCC 60.007 63.158 0.00 0.00 0.00 4.70
4821 7881 2.423290 GATTCGCTAGGTCGGCTCCC 62.423 65.000 0.00 0.00 0.00 4.30
4822 7882 2.930777 ATTCGCTAGGTCGGCTCCCT 62.931 60.000 0.00 0.00 36.04 4.20
4823 7883 3.597728 CGCTAGGTCGGCTCCCTC 61.598 72.222 0.00 0.00 33.35 4.30
4824 7884 3.228017 GCTAGGTCGGCTCCCTCC 61.228 72.222 0.00 0.00 33.35 4.30
4825 7885 2.279073 CTAGGTCGGCTCCCTCCA 59.721 66.667 0.00 0.00 33.35 3.86
4826 7886 1.830408 CTAGGTCGGCTCCCTCCAG 60.830 68.421 0.00 0.00 33.35 3.86
4827 7887 2.575455 CTAGGTCGGCTCCCTCCAGT 62.575 65.000 0.00 0.00 33.35 4.00
4828 7888 1.284111 TAGGTCGGCTCCCTCCAGTA 61.284 60.000 0.00 0.00 33.35 2.74
4829 7889 2.128507 GGTCGGCTCCCTCCAGTAG 61.129 68.421 0.00 0.00 0.00 2.57
4830 7890 1.380112 GTCGGCTCCCTCCAGTAGT 60.380 63.158 0.00 0.00 0.00 2.73
4831 7891 0.106819 GTCGGCTCCCTCCAGTAGTA 60.107 60.000 0.00 0.00 0.00 1.82
4832 7892 0.627451 TCGGCTCCCTCCAGTAGTAA 59.373 55.000 0.00 0.00 0.00 2.24
4833 7893 1.033574 CGGCTCCCTCCAGTAGTAAG 58.966 60.000 0.00 0.00 0.00 2.34
4834 7894 1.409802 CGGCTCCCTCCAGTAGTAAGA 60.410 57.143 0.00 0.00 0.00 2.10
4835 7895 2.748388 GGCTCCCTCCAGTAGTAAGAA 58.252 52.381 0.00 0.00 0.00 2.52
4836 7896 3.105283 GGCTCCCTCCAGTAGTAAGAAA 58.895 50.000 0.00 0.00 0.00 2.52
4837 7897 3.118702 GGCTCCCTCCAGTAGTAAGAAAC 60.119 52.174 0.00 0.00 0.00 2.78
4838 7898 3.118702 GCTCCCTCCAGTAGTAAGAAACC 60.119 52.174 0.00 0.00 0.00 3.27
4839 7899 4.094476 CTCCCTCCAGTAGTAAGAAACCA 58.906 47.826 0.00 0.00 0.00 3.67
4840 7900 3.836562 TCCCTCCAGTAGTAAGAAACCAC 59.163 47.826 0.00 0.00 0.00 4.16
4841 7901 3.838903 CCCTCCAGTAGTAAGAAACCACT 59.161 47.826 0.00 0.00 29.22 4.00
4842 7902 4.322801 CCCTCCAGTAGTAAGAAACCACTG 60.323 50.000 0.00 0.00 44.58 3.66
4843 7903 4.246458 CTCCAGTAGTAAGAAACCACTGC 58.754 47.826 0.00 0.00 43.90 4.40
4844 7904 3.007614 TCCAGTAGTAAGAAACCACTGCC 59.992 47.826 0.00 0.00 43.90 4.85
4845 7905 3.008049 CCAGTAGTAAGAAACCACTGCCT 59.992 47.826 0.00 0.00 43.90 4.75
4846 7906 4.505039 CCAGTAGTAAGAAACCACTGCCTT 60.505 45.833 0.00 0.00 43.90 4.35
4847 7907 5.279809 CCAGTAGTAAGAAACCACTGCCTTA 60.280 44.000 0.00 0.00 43.90 2.69
4848 7908 6.407202 CAGTAGTAAGAAACCACTGCCTTAT 58.593 40.000 0.00 0.00 40.25 1.73
4849 7909 6.879458 CAGTAGTAAGAAACCACTGCCTTATT 59.121 38.462 0.00 0.00 40.25 1.40
4850 7910 6.879458 AGTAGTAAGAAACCACTGCCTTATTG 59.121 38.462 0.00 0.00 28.04 1.90
4851 7911 5.876357 AGTAAGAAACCACTGCCTTATTGA 58.124 37.500 0.00 0.00 0.00 2.57
4852 7912 6.303839 AGTAAGAAACCACTGCCTTATTGAA 58.696 36.000 0.00 0.00 0.00 2.69
4853 7913 6.775629 AGTAAGAAACCACTGCCTTATTGAAA 59.224 34.615 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
691 1823 3.059386 GATCCACCCGCCGCAAAA 61.059 61.111 0.00 0.00 0.00 2.44
976 3046 3.379445 GAGTTGAGACGGGGCGGA 61.379 66.667 0.00 0.00 0.00 5.54
1041 3138 1.585006 GTGATGTCCGTCGGTGTCT 59.415 57.895 11.88 0.00 0.00 3.41
1117 3232 1.203313 CCTTTCGTTTCCGTGACGC 59.797 57.895 0.00 0.00 40.16 5.19
1195 3364 1.842381 CGTGGCCTTTCCTCCTTCCT 61.842 60.000 3.32 0.00 35.26 3.36
1330 3597 5.820926 TGCGCAAATTTGAGAAACATAAC 57.179 34.783 23.87 5.69 0.00 1.89
1341 3609 3.319755 AGGAATCACTTGCGCAAATTTG 58.680 40.909 25.01 19.88 0.00 2.32
1363 3631 9.027129 CAAATCAAATTGGTAGTCAAGCATATG 57.973 33.333 0.00 0.00 38.95 1.78
2159 4851 3.119708 GGAACATTCACTTCACTGGATGC 60.120 47.826 0.00 0.00 0.00 3.91
2382 5249 6.545666 TCCTTCTTCTGCTTGTTAATGTTGAA 59.454 34.615 0.00 0.00 0.00 2.69
2457 5324 5.486775 TGCCCATCCTTCCATCAAAATAAAA 59.513 36.000 0.00 0.00 0.00 1.52
2460 5327 4.262891 TGCCCATCCTTCCATCAAAATA 57.737 40.909 0.00 0.00 0.00 1.40
2470 5337 1.851304 TTGGTTGATGCCCATCCTTC 58.149 50.000 5.86 0.00 37.02 3.46
2488 5355 1.603739 GGGCGAAGGAGCTTGGTTT 60.604 57.895 0.00 0.00 37.29 3.27
2504 5371 1.287739 TGGAATCCTGGCCTTTTAGGG 59.712 52.381 3.32 0.00 35.37 3.53
2678 5545 5.863935 GCTTGTACTTCACCAAATTGATTCC 59.136 40.000 0.00 0.00 0.00 3.01
2856 5723 4.518970 GGCCTAACAATCAACAAGAGTGAA 59.481 41.667 0.00 0.00 44.82 3.18
3193 6064 5.013287 TGCACCAAGTACTTCCATAAGGTTA 59.987 40.000 4.77 0.00 37.01 2.85
3341 6215 4.990526 TCATCAAAAAGCTTCCTCTCCTT 58.009 39.130 0.00 0.00 0.00 3.36
3342 6216 4.647564 TCATCAAAAAGCTTCCTCTCCT 57.352 40.909 0.00 0.00 0.00 3.69
3343 6217 4.337836 GGATCATCAAAAAGCTTCCTCTCC 59.662 45.833 0.00 0.00 0.00 3.71
3437 6320 1.635663 CGGGCGTTCATGTCCACTTC 61.636 60.000 0.00 0.00 31.24 3.01
3446 6329 1.375523 GGTTGTCTCGGGCGTTCAT 60.376 57.895 0.00 0.00 0.00 2.57
3475 6358 0.391661 CATCCGTGGTAACTGCAGCT 60.392 55.000 15.27 3.62 37.61 4.24
3496 6379 4.261572 CCTTCCACAACCACAACACTTATG 60.262 45.833 0.00 0.00 0.00 1.90
3650 6551 1.678970 GAAAGGCGGGCTTCACCAT 60.679 57.895 17.70 0.79 42.05 3.55
3752 6653 4.910458 ACAGAAGTATAACAGCCAGGTT 57.090 40.909 0.00 0.00 34.81 3.50
3763 6664 7.761704 GCTCTCATTGTCTTGAACAGAAGTATA 59.238 37.037 0.00 0.00 39.58 1.47
3765 6666 5.928839 GCTCTCATTGTCTTGAACAGAAGTA 59.071 40.000 0.00 0.00 39.58 2.24
3856 6792 1.128611 CAGCTCTTTCACGCGTTCG 59.871 57.895 10.22 0.00 42.43 3.95
3863 6799 4.793028 GCAAAAACCCTACAGCTCTTTCAC 60.793 45.833 0.00 0.00 0.00 3.18
3943 6909 8.995220 GGCATCTTATGTAACGTCCATAAATTA 58.005 33.333 16.69 9.28 35.11 1.40
3959 6927 6.630444 ACTTTATTGAGCTGGCATCTTATG 57.370 37.500 0.00 0.00 0.00 1.90
3960 6928 7.486647 CAAACTTTATTGAGCTGGCATCTTAT 58.513 34.615 0.00 0.00 31.84 1.73
3961 6929 6.625740 GCAAACTTTATTGAGCTGGCATCTTA 60.626 38.462 0.00 0.00 31.84 2.10
4008 6976 8.363755 CAGTGACGTAAAAGTTTAGATCGTAAG 58.636 37.037 0.00 0.00 0.00 2.34
4090 7117 5.446860 TGTTACTGTATTTTGTGGAACCCA 58.553 37.500 0.00 0.00 34.36 4.51
4145 7172 4.333926 GCCAAAGCCACTTAGATTAGACAG 59.666 45.833 0.00 0.00 0.00 3.51
4231 7283 3.932710 GCCAGTGTTCGTTAATGAGATCA 59.067 43.478 0.00 0.00 0.00 2.92
4250 7302 1.672030 CAAGCCACGTCATCAGCCA 60.672 57.895 0.00 0.00 0.00 4.75
4254 7306 0.602638 GGACACAAGCCACGTCATCA 60.603 55.000 0.00 0.00 0.00 3.07
4291 7344 0.402566 AGGGAGAGGCTATGGGCATT 60.403 55.000 5.19 0.00 44.01 3.56
4331 7384 1.274167 CATTGTGGAGGCATGTGCTTT 59.726 47.619 4.84 0.00 41.70 3.51
4358 7412 1.941377 ATCGTACCCCCACACAAGTA 58.059 50.000 0.00 0.00 0.00 2.24
4359 7413 1.061546 AATCGTACCCCCACACAAGT 58.938 50.000 0.00 0.00 0.00 3.16
4360 7414 1.448985 CAATCGTACCCCCACACAAG 58.551 55.000 0.00 0.00 0.00 3.16
4361 7415 0.606944 GCAATCGTACCCCCACACAA 60.607 55.000 0.00 0.00 0.00 3.33
4365 7419 2.512974 CCGCAATCGTACCCCCAC 60.513 66.667 0.00 0.00 0.00 4.61
4366 7420 4.476752 GCCGCAATCGTACCCCCA 62.477 66.667 0.00 0.00 0.00 4.96
4389 7443 0.114954 ATGTTGTGGGCTTCCATGGT 59.885 50.000 12.58 0.00 43.38 3.55
4514 7574 0.606673 GAGCCGGCTTTTCCAAGTCT 60.607 55.000 33.34 2.41 31.79 3.24
4547 7607 5.776208 GGATCTTTAAGTTTTAACCACCCCA 59.224 40.000 0.00 0.00 0.00 4.96
4566 7626 6.127423 GCGGTGGTACATTATATAGTGGATCT 60.127 42.308 9.75 0.00 44.52 2.75
4569 7629 4.221262 GGCGGTGGTACATTATATAGTGGA 59.779 45.833 9.75 0.00 44.52 4.02
4571 7631 5.142061 TGGCGGTGGTACATTATATAGTG 57.858 43.478 3.83 3.83 44.52 2.74
4573 7633 8.857098 ACTATATGGCGGTGGTACATTATATAG 58.143 37.037 0.00 0.00 44.52 1.31
4575 7635 7.563924 AGACTATATGGCGGTGGTACATTATAT 59.436 37.037 0.00 0.00 44.52 0.86
4576 7636 6.893554 AGACTATATGGCGGTGGTACATTATA 59.106 38.462 0.00 0.00 44.52 0.98
4577 7637 5.720041 AGACTATATGGCGGTGGTACATTAT 59.280 40.000 0.00 0.00 44.52 1.28
4578 7638 5.081728 AGACTATATGGCGGTGGTACATTA 58.918 41.667 0.00 0.00 44.52 1.90
4579 7639 3.901844 AGACTATATGGCGGTGGTACATT 59.098 43.478 0.00 0.00 44.52 2.71
4588 7648 4.790765 TGAGATGAAGACTATATGGCGG 57.209 45.455 0.00 0.00 0.00 6.13
4594 7654 5.648526 GTCGGGCTATGAGATGAAGACTATA 59.351 44.000 0.00 0.00 0.00 1.31
4637 7697 7.432148 TGTAGTATTGCCAAAGAAGGAGATA 57.568 36.000 0.00 0.00 0.00 1.98
4699 7759 1.067354 ACGAAATAGACGGTGTGGACC 60.067 52.381 0.00 0.00 39.14 4.46
4700 7760 2.257034 GACGAAATAGACGGTGTGGAC 58.743 52.381 0.00 0.00 34.93 4.02
4701 7761 1.135603 CGACGAAATAGACGGTGTGGA 60.136 52.381 0.00 0.00 34.93 4.02
4702 7762 1.265568 CGACGAAATAGACGGTGTGG 58.734 55.000 0.00 0.00 34.93 4.17
4703 7763 1.973138 ACGACGAAATAGACGGTGTG 58.027 50.000 0.00 0.00 33.94 3.82
4704 7764 2.712057 AACGACGAAATAGACGGTGT 57.288 45.000 0.00 0.00 33.94 4.16
4705 7765 3.717830 CAAAACGACGAAATAGACGGTG 58.282 45.455 0.00 0.00 33.94 4.94
4706 7766 2.156310 GCAAAACGACGAAATAGACGGT 59.844 45.455 0.00 0.00 33.94 4.83
4707 7767 2.473376 GGCAAAACGACGAAATAGACGG 60.473 50.000 0.00 0.00 33.94 4.79
4708 7768 2.473376 GGGCAAAACGACGAAATAGACG 60.473 50.000 0.00 0.00 35.60 4.18
4709 7769 2.740447 AGGGCAAAACGACGAAATAGAC 59.260 45.455 0.00 0.00 0.00 2.59
4710 7770 3.048337 AGGGCAAAACGACGAAATAGA 57.952 42.857 0.00 0.00 0.00 1.98
4711 7771 3.058501 ACAAGGGCAAAACGACGAAATAG 60.059 43.478 0.00 0.00 0.00 1.73
4712 7772 2.879646 ACAAGGGCAAAACGACGAAATA 59.120 40.909 0.00 0.00 0.00 1.40
4713 7773 1.679153 ACAAGGGCAAAACGACGAAAT 59.321 42.857 0.00 0.00 0.00 2.17
4714 7774 1.096416 ACAAGGGCAAAACGACGAAA 58.904 45.000 0.00 0.00 0.00 3.46
4715 7775 0.378962 CACAAGGGCAAAACGACGAA 59.621 50.000 0.00 0.00 0.00 3.85
4716 7776 2.018544 CACAAGGGCAAAACGACGA 58.981 52.632 0.00 0.00 0.00 4.20
4717 7777 1.657181 GCACAAGGGCAAAACGACG 60.657 57.895 0.00 0.00 0.00 5.12
4718 7778 1.435515 TGCACAAGGGCAAAACGAC 59.564 52.632 0.00 0.00 41.65 4.34
4719 7779 3.926003 TGCACAAGGGCAAAACGA 58.074 50.000 0.00 0.00 41.65 3.85
4725 7785 1.815196 CTGTTGTTGCACAAGGGCA 59.185 52.632 0.00 0.00 39.00 5.36
4726 7786 1.592400 GCTGTTGTTGCACAAGGGC 60.592 57.895 2.52 6.30 39.00 5.19
4727 7787 1.299316 CGCTGTTGTTGCACAAGGG 60.299 57.895 2.52 0.00 39.00 3.95
4728 7788 0.317269 CTCGCTGTTGTTGCACAAGG 60.317 55.000 2.52 1.56 39.00 3.61
4729 7789 0.657312 TCTCGCTGTTGTTGCACAAG 59.343 50.000 2.52 0.00 39.00 3.16
4730 7790 1.308047 ATCTCGCTGTTGTTGCACAA 58.692 45.000 0.00 0.00 35.42 3.33
4731 7791 2.162319 TATCTCGCTGTTGTTGCACA 57.838 45.000 0.00 0.00 0.00 4.57
4732 7792 2.030946 GGATATCTCGCTGTTGTTGCAC 59.969 50.000 2.05 0.00 0.00 4.57
4733 7793 2.279741 GGATATCTCGCTGTTGTTGCA 58.720 47.619 2.05 0.00 0.00 4.08
4734 7794 1.599542 GGGATATCTCGCTGTTGTTGC 59.400 52.381 2.05 0.00 0.00 4.17
4735 7795 2.158900 AGGGGATATCTCGCTGTTGTTG 60.159 50.000 2.05 0.00 34.84 3.33
4736 7796 2.103263 GAGGGGATATCTCGCTGTTGTT 59.897 50.000 13.13 0.00 34.84 2.83
4737 7797 1.689273 GAGGGGATATCTCGCTGTTGT 59.311 52.381 13.13 0.00 34.84 3.32
4738 7798 1.336332 CGAGGGGATATCTCGCTGTTG 60.336 57.143 13.13 3.11 45.67 3.33
4739 7799 0.962489 CGAGGGGATATCTCGCTGTT 59.038 55.000 13.13 0.00 45.67 3.16
4740 7800 2.647356 CGAGGGGATATCTCGCTGT 58.353 57.895 13.13 0.00 45.67 4.40
4753 7813 0.179084 AATACATGACCGCACGAGGG 60.179 55.000 0.00 0.00 35.02 4.30
4754 7814 1.593006 GAAATACATGACCGCACGAGG 59.407 52.381 0.00 0.00 37.30 4.63
4755 7815 1.255342 CGAAATACATGACCGCACGAG 59.745 52.381 0.00 0.00 0.00 4.18
4756 7816 1.273688 CGAAATACATGACCGCACGA 58.726 50.000 0.00 0.00 0.00 4.35
4757 7817 0.996462 ACGAAATACATGACCGCACG 59.004 50.000 0.00 0.62 0.00 5.34
4758 7818 2.769376 CAACGAAATACATGACCGCAC 58.231 47.619 0.00 0.00 0.00 5.34
4759 7819 1.129624 GCAACGAAATACATGACCGCA 59.870 47.619 0.00 0.00 0.00 5.69
4760 7820 1.396996 AGCAACGAAATACATGACCGC 59.603 47.619 0.00 0.00 0.00 5.68
4761 7821 2.930040 AGAGCAACGAAATACATGACCG 59.070 45.455 0.00 0.00 0.00 4.79
4762 7822 4.946784 AAGAGCAACGAAATACATGACC 57.053 40.909 0.00 0.00 0.00 4.02
4763 7823 5.324697 GGAAAGAGCAACGAAATACATGAC 58.675 41.667 0.00 0.00 0.00 3.06
4764 7824 4.092821 CGGAAAGAGCAACGAAATACATGA 59.907 41.667 0.00 0.00 0.00 3.07
4765 7825 4.334443 CGGAAAGAGCAACGAAATACATG 58.666 43.478 0.00 0.00 0.00 3.21
4766 7826 3.181510 GCGGAAAGAGCAACGAAATACAT 60.182 43.478 0.00 0.00 34.19 2.29
4767 7827 2.158841 GCGGAAAGAGCAACGAAATACA 59.841 45.455 0.00 0.00 34.19 2.29
4768 7828 2.158841 TGCGGAAAGAGCAACGAAATAC 59.841 45.455 0.00 0.00 42.18 1.89
4769 7829 2.158841 GTGCGGAAAGAGCAACGAAATA 59.841 45.455 0.00 0.00 46.97 1.40
4770 7830 1.069227 GTGCGGAAAGAGCAACGAAAT 60.069 47.619 0.00 0.00 46.97 2.17
4771 7831 0.306533 GTGCGGAAAGAGCAACGAAA 59.693 50.000 0.00 0.00 46.97 3.46
4772 7832 0.812014 TGTGCGGAAAGAGCAACGAA 60.812 50.000 0.00 0.00 46.97 3.85
4773 7833 0.602638 ATGTGCGGAAAGAGCAACGA 60.603 50.000 0.00 0.00 46.97 3.85
4774 7834 0.238289 AATGTGCGGAAAGAGCAACG 59.762 50.000 0.00 0.00 46.97 4.10
4775 7835 1.689959 CAATGTGCGGAAAGAGCAAC 58.310 50.000 0.00 0.00 46.97 4.17
4776 7836 0.039256 GCAATGTGCGGAAAGAGCAA 60.039 50.000 0.00 0.00 46.97 3.91
4777 7837 1.580942 GCAATGTGCGGAAAGAGCA 59.419 52.632 0.00 0.00 42.99 4.26
4778 7838 1.153958 GGCAATGTGCGGAAAGAGC 60.154 57.895 0.00 0.00 46.21 4.09
4779 7839 0.449388 GAGGCAATGTGCGGAAAGAG 59.551 55.000 0.00 0.00 46.21 2.85
4780 7840 0.960364 GGAGGCAATGTGCGGAAAGA 60.960 55.000 0.00 0.00 46.21 2.52
4781 7841 1.508088 GGAGGCAATGTGCGGAAAG 59.492 57.895 0.00 0.00 46.21 2.62
4782 7842 2.331893 CGGAGGCAATGTGCGGAAA 61.332 57.895 0.00 0.00 46.21 3.13
4783 7843 2.745884 CGGAGGCAATGTGCGGAA 60.746 61.111 0.00 0.00 46.21 4.30
4784 7844 4.015406 ACGGAGGCAATGTGCGGA 62.015 61.111 0.00 0.00 46.21 5.54
4785 7845 3.803082 CACGGAGGCAATGTGCGG 61.803 66.667 0.00 0.00 46.21 5.69
4786 7846 1.647545 AATCACGGAGGCAATGTGCG 61.648 55.000 0.00 0.00 46.21 5.34
4787 7847 0.099436 GAATCACGGAGGCAATGTGC 59.901 55.000 0.00 0.00 44.08 4.57
4788 7848 0.374758 CGAATCACGGAGGCAATGTG 59.625 55.000 0.00 0.00 38.46 3.21
4789 7849 1.369091 GCGAATCACGGAGGCAATGT 61.369 55.000 0.00 0.00 42.83 2.71
4790 7850 1.091771 AGCGAATCACGGAGGCAATG 61.092 55.000 0.00 0.00 42.83 2.82
4791 7851 0.464036 TAGCGAATCACGGAGGCAAT 59.536 50.000 0.00 0.00 42.83 3.56
4792 7852 0.179111 CTAGCGAATCACGGAGGCAA 60.179 55.000 0.00 0.00 42.83 4.52
4793 7853 1.437573 CTAGCGAATCACGGAGGCA 59.562 57.895 0.00 0.00 42.83 4.75
4794 7854 1.300233 CCTAGCGAATCACGGAGGC 60.300 63.158 0.00 0.00 42.83 4.70
4795 7855 0.030908 GACCTAGCGAATCACGGAGG 59.969 60.000 0.00 0.00 42.83 4.30
4796 7856 0.317103 CGACCTAGCGAATCACGGAG 60.317 60.000 0.00 0.00 42.83 4.63
4797 7857 1.721664 CCGACCTAGCGAATCACGGA 61.722 60.000 0.00 0.00 41.09 4.69
4798 7858 1.299165 CCGACCTAGCGAATCACGG 60.299 63.158 0.00 0.00 42.83 4.94
4799 7859 1.944676 GCCGACCTAGCGAATCACG 60.945 63.158 0.00 0.00 45.66 4.35
4800 7860 0.595310 GAGCCGACCTAGCGAATCAC 60.595 60.000 0.00 0.00 34.64 3.06
4801 7861 1.734137 GAGCCGACCTAGCGAATCA 59.266 57.895 0.00 0.00 34.64 2.57
4802 7862 1.007154 GGAGCCGACCTAGCGAATC 60.007 63.158 0.00 0.00 34.64 2.52
4803 7863 2.499827 GGGAGCCGACCTAGCGAAT 61.500 63.158 0.00 0.00 34.64 3.34
4804 7864 3.145551 GGGAGCCGACCTAGCGAA 61.146 66.667 0.00 0.00 34.64 4.70
4805 7865 4.124943 AGGGAGCCGACCTAGCGA 62.125 66.667 0.00 0.00 36.32 4.93
4806 7866 3.597728 GAGGGAGCCGACCTAGCG 61.598 72.222 0.00 0.00 38.79 4.26
4807 7867 3.228017 GGAGGGAGCCGACCTAGC 61.228 72.222 0.00 0.00 38.79 3.42
4808 7868 1.830408 CTGGAGGGAGCCGACCTAG 60.830 68.421 0.00 0.00 38.79 3.02
4809 7869 1.284111 TACTGGAGGGAGCCGACCTA 61.284 60.000 0.00 0.00 38.79 3.08
4810 7870 2.575455 CTACTGGAGGGAGCCGACCT 62.575 65.000 0.00 0.00 42.18 3.85
4811 7871 2.043248 TACTGGAGGGAGCCGACC 60.043 66.667 0.00 0.00 0.00 4.79
4812 7872 0.106819 TACTACTGGAGGGAGCCGAC 60.107 60.000 0.00 0.00 0.00 4.79
4813 7873 0.627451 TTACTACTGGAGGGAGCCGA 59.373 55.000 0.00 0.00 0.00 5.54
4814 7874 1.033574 CTTACTACTGGAGGGAGCCG 58.966 60.000 0.00 0.00 0.00 5.52
4815 7875 2.456073 TCTTACTACTGGAGGGAGCC 57.544 55.000 0.00 0.00 0.00 4.70
4816 7876 3.118702 GGTTTCTTACTACTGGAGGGAGC 60.119 52.174 0.00 0.00 0.00 4.70
4817 7877 4.081586 GTGGTTTCTTACTACTGGAGGGAG 60.082 50.000 0.00 0.00 35.52 4.30
4818 7878 3.836562 GTGGTTTCTTACTACTGGAGGGA 59.163 47.826 0.00 0.00 35.52 4.20
4819 7879 3.838903 AGTGGTTTCTTACTACTGGAGGG 59.161 47.826 0.00 0.00 45.70 4.30
4826 7886 6.877322 TCAATAAGGCAGTGGTTTCTTACTAC 59.123 38.462 0.00 0.00 38.43 2.73
4827 7887 7.011499 TCAATAAGGCAGTGGTTTCTTACTA 57.989 36.000 0.00 0.00 0.00 1.82
4828 7888 5.876357 TCAATAAGGCAGTGGTTTCTTACT 58.124 37.500 0.00 0.00 0.00 2.24
4829 7889 6.569179 TTCAATAAGGCAGTGGTTTCTTAC 57.431 37.500 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.