Multiple sequence alignment - TraesCS7A01G081900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G081900 chr7A 100.000 2644 0 0 1 2644 47282850 47285493 0.000000e+00 4883.0
1 TraesCS7A01G081900 chr7A 91.886 949 61 5 133 1078 47225451 47224516 0.000000e+00 1312.0
2 TraesCS7A01G081900 chr7A 77.351 1744 269 81 183 1847 47000426 47002122 0.000000e+00 917.0
3 TraesCS7A01G081900 chr7A 77.966 1357 243 37 183 1523 47007186 47008502 0.000000e+00 798.0
4 TraesCS7A01G081900 chr7A 76.164 1611 286 55 287 1865 47016589 47018133 0.000000e+00 758.0
5 TraesCS7A01G081900 chr7A 75.698 1362 237 57 279 1585 47256370 47255048 1.750000e-166 595.0
6 TraesCS7A01G081900 chr7A 87.302 441 49 7 1074 1511 47166910 47166474 5.080000e-137 497.0
7 TraesCS7A01G081900 chr7A 93.248 311 19 2 1564 1874 47157663 47157355 8.630000e-125 457.0
8 TraesCS7A01G081900 chr7A 84.655 391 50 8 2170 2558 653030116 653030498 5.340000e-102 381.0
9 TraesCS7A01G081900 chr7A 76.083 577 107 18 291 862 47033974 47033424 3.350000e-69 272.0
10 TraesCS7A01G081900 chr7A 84.753 223 30 3 1347 1569 46961076 46961294 1.230000e-53 220.0
11 TraesCS7A01G081900 chr7A 81.333 300 26 17 1884 2155 47157312 47157015 1.590000e-52 217.0
12 TraesCS7A01G081900 chr7A 84.793 217 29 3 1353 1569 47496382 47496170 5.730000e-52 215.0
13 TraesCS7A01G081900 chr7A 92.857 70 1 3 2555 2622 47502969 47502902 6.020000e-17 99.0
14 TraesCS7A01G081900 chrUn 89.973 1885 113 16 15 1874 48990106 48991939 0.000000e+00 2364.0
15 TraesCS7A01G081900 chrUn 77.617 1309 230 37 290 1586 48866858 48865601 0.000000e+00 736.0
16 TraesCS7A01G081900 chrUn 75.561 1694 298 71 224 1853 48987513 48985872 0.000000e+00 728.0
17 TraesCS7A01G081900 chrUn 85.401 411 44 12 2157 2560 102647749 102647348 1.890000e-111 412.0
18 TraesCS7A01G081900 chrUn 81.784 269 43 4 1208 1476 48861093 48860831 1.230000e-53 220.0
19 TraesCS7A01G081900 chrUn 81.784 269 43 4 1208 1476 48869759 48869497 1.230000e-53 220.0
20 TraesCS7A01G081900 chrUn 92.763 152 8 3 1984 2133 48985148 48984998 1.590000e-52 217.0
21 TraesCS7A01G081900 chrUn 90.683 161 11 1 1960 2116 48992099 48992259 7.410000e-51 211.0
22 TraesCS7A01G081900 chrUn 93.023 86 5 1 1871 1956 48991977 48992061 9.940000e-25 124.0
23 TraesCS7A01G081900 chrUn 90.909 44 4 0 2586 2629 48890303 48890260 2.840000e-05 60.2
24 TraesCS7A01G081900 chr4A 87.784 1277 104 28 693 1952 655442833 655444074 0.000000e+00 1447.0
25 TraesCS7A01G081900 chr4A 77.176 1310 244 33 183 1476 656029920 656031190 0.000000e+00 712.0
26 TraesCS7A01G081900 chr4A 76.986 1347 245 38 183 1503 656249670 656250977 0.000000e+00 710.0
27 TraesCS7A01G081900 chr4A 76.954 1228 227 35 291 1503 656748838 656747652 0.000000e+00 649.0
28 TraesCS7A01G081900 chr4A 76.709 1258 233 36 279 1515 650831066 650832284 0.000000e+00 645.0
29 TraesCS7A01G081900 chr4A 76.437 1235 233 40 285 1503 656550837 656552029 1.340000e-172 616.0
30 TraesCS7A01G081900 chr4A 79.501 922 129 26 568 1473 655659103 655659980 3.770000e-168 601.0
31 TraesCS7A01G081900 chr4A 82.864 426 53 17 1540 1952 655447775 655448193 5.380000e-97 364.0
32 TraesCS7A01G081900 chr4A 72.840 972 183 34 568 1516 656258024 656258937 9.390000e-65 257.0
33 TraesCS7A01G081900 chr4A 93.548 62 4 0 1813 1874 655443895 655443956 2.800000e-15 93.5
34 TraesCS7A01G081900 chr4A 93.548 62 4 0 1813 1874 655448014 655448075 2.800000e-15 93.5
35 TraesCS7A01G081900 chr4A 91.429 70 2 3 2555 2622 656854605 656854538 2.800000e-15 93.5
36 TraesCS7A01G081900 chr7D 95.833 576 21 1 1302 1874 44654200 44653625 0.000000e+00 928.0
37 TraesCS7A01G081900 chr7D 77.296 1731 273 77 188 1847 44530442 44532123 0.000000e+00 909.0
38 TraesCS7A01G081900 chr7D 78.751 1313 228 34 223 1523 44538249 44539522 0.000000e+00 832.0
39 TraesCS7A01G081900 chr7D 77.191 1004 179 29 584 1577 44550971 44551934 8.330000e-150 540.0
40 TraesCS7A01G081900 chr7D 89.443 341 20 8 1540 1874 44701626 44701956 1.460000e-112 416.0
41 TraesCS7A01G081900 chr7D 90.964 166 12 2 61 225 44701407 44701570 1.230000e-53 220.0
42 TraesCS7A01G081900 chr7D 90.385 156 11 2 1961 2113 44702116 44702270 4.460000e-48 202.0
43 TraesCS7A01G081900 chr7D 93.243 74 3 1 2558 2631 44580796 44580725 1.000000e-19 108.0
44 TraesCS7A01G081900 chr7D 81.203 133 22 2 1726 1858 44654996 44654867 1.290000e-18 104.0
45 TraesCS7A01G081900 chr7D 81.203 133 22 2 1726 1858 44710352 44710481 1.290000e-18 104.0
46 TraesCS7A01G081900 chr7D 92.857 70 1 3 2555 2622 45274229 45274162 6.020000e-17 99.0
47 TraesCS7A01G081900 chr7D 91.525 59 2 2 2565 2623 44515708 44515763 7.850000e-11 78.7
48 TraesCS7A01G081900 chr7D 95.238 42 1 1 2582 2623 44547759 44547799 6.110000e-07 65.8
49 TraesCS7A01G081900 chr3A 87.240 384 35 14 2157 2539 575316256 575315886 2.430000e-115 425.0
50 TraesCS7A01G081900 chr3A 76.337 486 82 20 267 744 11865278 11865738 2.050000e-56 230.0
51 TraesCS7A01G081900 chr5D 85.167 418 40 11 2154 2558 197479272 197478864 2.450000e-110 409.0
52 TraesCS7A01G081900 chr3D 85.396 404 48 6 2157 2558 383592040 383591646 2.450000e-110 409.0
53 TraesCS7A01G081900 chr3D 84.096 415 44 11 2157 2558 508202217 508201812 5.340000e-102 381.0
54 TraesCS7A01G081900 chr2D 85.149 404 52 5 2157 2558 569260784 569261181 8.810000e-110 407.0
55 TraesCS7A01G081900 chr2D 84.029 407 50 10 2157 2558 507459921 507459525 6.910000e-101 377.0
56 TraesCS7A01G081900 chr2D 76.608 171 40 0 292 462 19023223 19023053 7.790000e-16 95.3
57 TraesCS7A01G081900 chr3B 84.715 386 44 11 2158 2539 592858945 592858571 3.210000e-99 372.0
58 TraesCS7A01G081900 chr3B 72.364 901 162 46 814 1659 3205907 3206775 1.240000e-48 204.0
59 TraesCS7A01G081900 chr3B 71.928 887 173 45 807 1636 11511529 11512396 3.470000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G081900 chr7A 47282850 47285493 2643 False 4883.000000 4883 100.000000 1 2644 1 chr7A.!!$F5 2643
1 TraesCS7A01G081900 chr7A 47224516 47225451 935 True 1312.000000 1312 91.886000 133 1078 1 chr7A.!!$R3 945
2 TraesCS7A01G081900 chr7A 47000426 47002122 1696 False 917.000000 917 77.351000 183 1847 1 chr7A.!!$F2 1664
3 TraesCS7A01G081900 chr7A 47007186 47008502 1316 False 798.000000 798 77.966000 183 1523 1 chr7A.!!$F3 1340
4 TraesCS7A01G081900 chr7A 47016589 47018133 1544 False 758.000000 758 76.164000 287 1865 1 chr7A.!!$F4 1578
5 TraesCS7A01G081900 chr7A 47255048 47256370 1322 True 595.000000 595 75.698000 279 1585 1 chr7A.!!$R4 1306
6 TraesCS7A01G081900 chr7A 47157015 47157663 648 True 337.000000 457 87.290500 1564 2155 2 chr7A.!!$R7 591
7 TraesCS7A01G081900 chr7A 47033424 47033974 550 True 272.000000 272 76.083000 291 862 1 chr7A.!!$R1 571
8 TraesCS7A01G081900 chrUn 48990106 48992259 2153 False 899.666667 2364 91.226333 15 2116 3 chrUn.!!$F1 2101
9 TraesCS7A01G081900 chrUn 48865601 48869759 4158 True 478.000000 736 79.700500 290 1586 2 chrUn.!!$R4 1296
10 TraesCS7A01G081900 chrUn 48984998 48987513 2515 True 472.500000 728 84.162000 224 2133 2 chrUn.!!$R5 1909
11 TraesCS7A01G081900 chr4A 656029920 656031190 1270 False 712.000000 712 77.176000 183 1476 1 chr4A.!!$F3 1293
12 TraesCS7A01G081900 chr4A 656249670 656250977 1307 False 710.000000 710 76.986000 183 1503 1 chr4A.!!$F4 1320
13 TraesCS7A01G081900 chr4A 656747652 656748838 1186 True 649.000000 649 76.954000 291 1503 1 chr4A.!!$R1 1212
14 TraesCS7A01G081900 chr4A 650831066 650832284 1218 False 645.000000 645 76.709000 279 1515 1 chr4A.!!$F1 1236
15 TraesCS7A01G081900 chr4A 656550837 656552029 1192 False 616.000000 616 76.437000 285 1503 1 chr4A.!!$F6 1218
16 TraesCS7A01G081900 chr4A 655659103 655659980 877 False 601.000000 601 79.501000 568 1473 1 chr4A.!!$F2 905
17 TraesCS7A01G081900 chr4A 655442833 655448193 5360 False 499.500000 1447 89.436000 693 1952 4 chr4A.!!$F7 1259
18 TraesCS7A01G081900 chr4A 656258024 656258937 913 False 257.000000 257 72.840000 568 1516 1 chr4A.!!$F5 948
19 TraesCS7A01G081900 chr7D 44530442 44532123 1681 False 909.000000 909 77.296000 188 1847 1 chr7D.!!$F2 1659
20 TraesCS7A01G081900 chr7D 44538249 44539522 1273 False 832.000000 832 78.751000 223 1523 1 chr7D.!!$F3 1300
21 TraesCS7A01G081900 chr7D 44653625 44654996 1371 True 516.000000 928 88.518000 1302 1874 2 chr7D.!!$R3 572
22 TraesCS7A01G081900 chr7D 44547759 44551934 4175 False 302.900000 540 86.214500 584 2623 2 chr7D.!!$F5 2039
23 TraesCS7A01G081900 chr7D 44701407 44702270 863 False 279.333333 416 90.264000 61 2113 3 chr7D.!!$F6 2052
24 TraesCS7A01G081900 chr3B 3205907 3206775 868 False 204.000000 204 72.364000 814 1659 1 chr3B.!!$F1 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.373716 GCGCGGTATCAGGAACAAAG 59.626 55.0 8.83 0.00 0.0 2.77 F
368 392 0.810031 CGGCCAAGGATGTACTTCGG 60.810 60.0 2.24 0.75 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1197 5795 2.302445 CCATCCTAGGGAGAGCATTGAG 59.698 54.545 9.46 0.0 34.05 3.02 R
2170 11615 0.109412 GTGCAAATGAGCTCAGGTGC 60.109 55.000 32.50 32.5 38.99 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.440850 CACAAATGACACAGCGCGG 60.441 57.895 8.83 5.83 0.00 6.46
23 24 1.006832 AAATGACACAGCGCGGTATC 58.993 50.000 14.13 13.10 0.00 2.24
29 30 1.153628 ACAGCGCGGTATCAGGAAC 60.154 57.895 12.68 0.00 0.00 3.62
30 31 1.153647 CAGCGCGGTATCAGGAACA 60.154 57.895 11.92 0.00 0.00 3.18
33 34 0.373716 GCGCGGTATCAGGAACAAAG 59.626 55.000 8.83 0.00 0.00 2.77
51 52 6.779115 ACAAAGAAGTTCAAAAACCAACAC 57.221 33.333 5.50 0.00 35.92 3.32
74 75 4.051922 CGGTCCACTTGCATAGATCTAAC 58.948 47.826 6.52 2.90 0.00 2.34
101 103 5.242838 TCCACCATAAAATGAGTGACCAAAC 59.757 40.000 8.95 0.00 35.09 2.93
103 105 6.151691 CACCATAAAATGAGTGACCAAACTG 58.848 40.000 0.00 0.00 35.09 3.16
368 392 0.810031 CGGCCAAGGATGTACTTCGG 60.810 60.000 2.24 0.75 0.00 4.30
370 394 1.483415 GGCCAAGGATGTACTTCGGTA 59.517 52.381 0.00 0.00 0.00 4.02
482 506 6.767902 TCATCAAAAACATAGAGGGCATCTAC 59.232 38.462 11.55 0.00 43.35 2.59
531 555 1.379443 ATACAGCGTGTCCTCCGGA 60.379 57.895 2.93 2.93 0.00 5.14
745 5252 3.192103 AACACCGGGTTCTCTGGGC 62.192 63.158 6.32 0.00 46.36 5.36
754 5261 1.207329 GGTTCTCTGGGCGTCATACTT 59.793 52.381 0.00 0.00 0.00 2.24
758 5265 2.094182 TCTCTGGGCGTCATACTTGAAC 60.094 50.000 0.00 0.00 32.48 3.18
762 5269 2.156098 GGGCGTCATACTTGAACCAAA 58.844 47.619 0.00 0.00 33.77 3.28
821 5373 4.219944 ACTGAGTTGCCTGATTACTTCGTA 59.780 41.667 0.00 0.00 0.00 3.43
871 5423 2.933906 GCATCCAATGGCTGACAATTTG 59.066 45.455 7.38 0.00 0.00 2.32
876 5428 5.867330 TCCAATGGCTGACAATTTGAAAAT 58.133 33.333 2.79 0.00 0.00 1.82
903 5464 4.226620 GGTTTCCTACCCTGTCCTTCAATA 59.773 45.833 0.00 0.00 41.43 1.90
1050 5634 7.283127 GTGATAAGGTGACATTGTTGGATATGT 59.717 37.037 0.00 0.00 37.68 2.29
1197 5795 4.329462 TTGCCACCATTTAAGTTTGACC 57.671 40.909 0.00 0.00 0.00 4.02
1308 5916 5.637006 TGGTGTGTTTTTAGGATATGTGC 57.363 39.130 0.00 0.00 0.00 4.57
1311 5919 5.447279 GGTGTGTTTTTAGGATATGTGCGAG 60.447 44.000 0.00 0.00 0.00 5.03
1419 6057 3.072184 AGAAGATGCTGTGAACAAGGAGT 59.928 43.478 0.00 0.00 0.00 3.85
1491 6157 1.133792 ACTAGCTGTTTGTTGTGCCCT 60.134 47.619 0.00 0.00 0.00 5.19
1814 10851 8.439964 AATGGTTAGTAGTTTAGTTACTCCCA 57.560 34.615 0.00 6.33 37.02 4.37
1874 10911 1.888512 GCTTTGGTCCTGCTGATTTCA 59.111 47.619 0.00 0.00 0.00 2.69
1875 10912 2.494870 GCTTTGGTCCTGCTGATTTCAT 59.505 45.455 0.00 0.00 0.00 2.57
1876 10913 3.675228 GCTTTGGTCCTGCTGATTTCATG 60.675 47.826 0.00 0.00 0.00 3.07
1877 10914 2.885135 TGGTCCTGCTGATTTCATGT 57.115 45.000 0.00 0.00 0.00 3.21
1878 10915 3.159213 TGGTCCTGCTGATTTCATGTT 57.841 42.857 0.00 0.00 0.00 2.71
1977 11153 5.006941 GCAGGTTTTACTACTTCAACACGAA 59.993 40.000 0.00 0.00 0.00 3.85
2006 11445 3.476552 TCTGTTTTCTGGCAAGTACAGG 58.523 45.455 15.74 0.00 36.62 4.00
2024 11463 3.706086 ACAGGCTTTGTTCCATTGACTTT 59.294 39.130 0.00 0.00 36.31 2.66
2035 11474 6.127225 TGTTCCATTGACTTTCAACCATTTCA 60.127 34.615 0.00 0.00 39.45 2.69
2070 11511 3.261897 TGGCTTTTGGTTTTGTTTCCAGA 59.738 39.130 0.00 0.00 35.05 3.86
2140 11585 3.181450 ACTTTCACCAGTTGGGAGAAGAG 60.181 47.826 2.79 8.73 45.29 2.85
2142 11587 1.971357 TCACCAGTTGGGAGAAGAGAC 59.029 52.381 2.79 0.00 41.15 3.36
2155 11600 5.244178 GGGAGAAGAGACGTTGGTGATATAT 59.756 44.000 0.00 0.00 0.00 0.86
2156 11601 6.153067 GGAGAAGAGACGTTGGTGATATATG 58.847 44.000 0.00 0.00 0.00 1.78
2157 11602 6.016192 GGAGAAGAGACGTTGGTGATATATGA 60.016 42.308 0.00 0.00 0.00 2.15
2158 11603 7.348080 AGAAGAGACGTTGGTGATATATGAA 57.652 36.000 0.00 0.00 0.00 2.57
2159 11604 7.782049 AGAAGAGACGTTGGTGATATATGAAA 58.218 34.615 0.00 0.00 0.00 2.69
2160 11605 8.424918 AGAAGAGACGTTGGTGATATATGAAAT 58.575 33.333 0.00 0.00 0.00 2.17
2161 11606 8.964476 AAGAGACGTTGGTGATATATGAAATT 57.036 30.769 0.00 0.00 0.00 1.82
2162 11607 8.594881 AGAGACGTTGGTGATATATGAAATTC 57.405 34.615 0.00 0.00 0.00 2.17
2163 11608 7.657761 AGAGACGTTGGTGATATATGAAATTCC 59.342 37.037 0.00 0.00 0.00 3.01
2164 11609 7.279615 AGACGTTGGTGATATATGAAATTCCA 58.720 34.615 0.00 0.00 0.00 3.53
2165 11610 7.939039 AGACGTTGGTGATATATGAAATTCCAT 59.061 33.333 0.00 0.00 0.00 3.41
2166 11611 8.099364 ACGTTGGTGATATATGAAATTCCATC 57.901 34.615 0.00 0.00 0.00 3.51
2167 11612 7.939039 ACGTTGGTGATATATGAAATTCCATCT 59.061 33.333 0.00 0.00 0.00 2.90
2168 11613 8.446273 CGTTGGTGATATATGAAATTCCATCTC 58.554 37.037 0.00 0.00 0.00 2.75
2169 11614 9.512588 GTTGGTGATATATGAAATTCCATCTCT 57.487 33.333 0.00 0.00 0.00 3.10
2170 11615 9.511272 TTGGTGATATATGAAATTCCATCTCTG 57.489 33.333 0.00 0.00 0.00 3.35
2171 11616 7.609146 TGGTGATATATGAAATTCCATCTCTGC 59.391 37.037 0.00 0.00 0.00 4.26
2172 11617 7.609146 GGTGATATATGAAATTCCATCTCTGCA 59.391 37.037 0.00 0.00 0.00 4.41
2173 11618 8.449397 GTGATATATGAAATTCCATCTCTGCAC 58.551 37.037 0.00 0.00 0.00 4.57
2174 11619 7.609146 TGATATATGAAATTCCATCTCTGCACC 59.391 37.037 0.00 0.00 0.00 5.01
2175 11620 3.726557 TGAAATTCCATCTCTGCACCT 57.273 42.857 0.00 0.00 0.00 4.00
2176 11621 3.349927 TGAAATTCCATCTCTGCACCTG 58.650 45.455 0.00 0.00 0.00 4.00
2177 11622 3.009363 TGAAATTCCATCTCTGCACCTGA 59.991 43.478 0.00 0.00 0.00 3.86
2178 11623 3.278668 AATTCCATCTCTGCACCTGAG 57.721 47.619 0.00 0.00 0.00 3.35
2179 11624 0.251354 TTCCATCTCTGCACCTGAGC 59.749 55.000 0.00 0.00 31.05 4.26
2180 11625 0.616964 TCCATCTCTGCACCTGAGCT 60.617 55.000 0.00 0.00 34.99 4.09
2181 11626 0.179078 CCATCTCTGCACCTGAGCTC 60.179 60.000 6.82 6.82 34.99 4.09
2182 11627 0.535797 CATCTCTGCACCTGAGCTCA 59.464 55.000 17.19 17.19 34.99 4.26
2183 11628 1.139256 CATCTCTGCACCTGAGCTCAT 59.861 52.381 18.63 0.00 34.99 2.90
2184 11629 1.273759 TCTCTGCACCTGAGCTCATT 58.726 50.000 18.63 4.31 34.99 2.57
2185 11630 1.627329 TCTCTGCACCTGAGCTCATTT 59.373 47.619 18.63 3.90 34.99 2.32
2186 11631 1.738350 CTCTGCACCTGAGCTCATTTG 59.262 52.381 18.63 17.51 34.99 2.32
2187 11632 0.170561 CTGCACCTGAGCTCATTTGC 59.829 55.000 29.80 29.80 35.35 3.68
2188 11633 0.537828 TGCACCTGAGCTCATTTGCA 60.538 50.000 32.98 32.98 39.62 4.08
2189 11634 0.109412 GCACCTGAGCTCATTTGCAC 60.109 55.000 30.78 13.05 35.07 4.57
2190 11635 0.524862 CACCTGAGCTCATTTGCACC 59.475 55.000 18.63 0.00 34.99 5.01
2191 11636 0.403271 ACCTGAGCTCATTTGCACCT 59.597 50.000 18.63 0.00 34.99 4.00
2192 11637 0.809385 CCTGAGCTCATTTGCACCTG 59.191 55.000 18.63 1.55 34.99 4.00
2193 11638 0.170561 CTGAGCTCATTTGCACCTGC 59.829 55.000 18.63 0.00 42.50 4.85
2194 11639 1.136147 GAGCTCATTTGCACCTGCG 59.864 57.895 9.40 0.00 45.83 5.18
2195 11640 2.505557 GCTCATTTGCACCTGCGC 60.506 61.111 0.00 0.00 45.83 6.09
2196 11641 2.986306 GCTCATTTGCACCTGCGCT 61.986 57.895 9.73 0.00 45.83 5.92
2197 11642 1.154093 CTCATTTGCACCTGCGCTG 60.154 57.895 9.73 8.47 45.83 5.18
2198 11643 1.579964 CTCATTTGCACCTGCGCTGA 61.580 55.000 16.65 2.81 45.83 4.26
2199 11644 1.443194 CATTTGCACCTGCGCTGAC 60.443 57.895 16.65 5.48 45.83 3.51
2200 11645 2.969806 ATTTGCACCTGCGCTGACG 61.970 57.895 16.65 7.18 45.83 4.35
2201 11646 4.600576 TTGCACCTGCGCTGACGA 62.601 61.111 16.65 2.02 45.83 4.20
2202 11647 4.600576 TGCACCTGCGCTGACGAA 62.601 61.111 16.65 0.00 45.83 3.85
2203 11648 3.345808 GCACCTGCGCTGACGAAA 61.346 61.111 16.65 0.00 43.93 3.46
2204 11649 2.892334 GCACCTGCGCTGACGAAAA 61.892 57.895 16.65 0.00 43.93 2.29
2205 11650 1.646540 CACCTGCGCTGACGAAAAA 59.353 52.632 16.65 0.00 43.93 1.94
2265 11710 8.725405 TCTGAAAAATTATTATGCGGTAGACA 57.275 30.769 0.00 0.00 0.00 3.41
2266 11711 9.168451 TCTGAAAAATTATTATGCGGTAGACAA 57.832 29.630 0.00 0.00 0.00 3.18
2267 11712 9.950680 CTGAAAAATTATTATGCGGTAGACAAT 57.049 29.630 0.00 0.00 0.00 2.71
2273 11718 9.897744 AATTATTATGCGGTAGACAATTTGATG 57.102 29.630 2.79 0.00 0.00 3.07
2274 11719 3.698029 ATGCGGTAGACAATTTGATGC 57.302 42.857 2.79 0.00 0.00 3.91
2275 11720 2.431454 TGCGGTAGACAATTTGATGCA 58.569 42.857 2.79 0.00 0.00 3.96
2276 11721 3.016031 TGCGGTAGACAATTTGATGCAT 58.984 40.909 0.00 0.00 0.00 3.96
2277 11722 3.181498 TGCGGTAGACAATTTGATGCATG 60.181 43.478 2.46 0.00 0.00 4.06
2278 11723 3.793129 GCGGTAGACAATTTGATGCATGG 60.793 47.826 2.46 0.00 0.00 3.66
2279 11724 3.243168 CGGTAGACAATTTGATGCATGGG 60.243 47.826 2.46 0.00 0.00 4.00
2280 11725 3.068590 GGTAGACAATTTGATGCATGGGG 59.931 47.826 2.46 0.00 0.00 4.96
2281 11726 2.823959 AGACAATTTGATGCATGGGGT 58.176 42.857 2.46 0.00 0.00 4.95
2282 11727 3.175594 AGACAATTTGATGCATGGGGTT 58.824 40.909 2.46 0.00 0.00 4.11
2283 11728 3.196254 AGACAATTTGATGCATGGGGTTC 59.804 43.478 2.46 0.00 0.00 3.62
2284 11729 2.094078 ACAATTTGATGCATGGGGTTCG 60.094 45.455 2.46 0.00 0.00 3.95
2285 11730 0.461135 ATTTGATGCATGGGGTTCGC 59.539 50.000 2.46 0.00 0.00 4.70
2286 11731 0.611618 TTTGATGCATGGGGTTCGCT 60.612 50.000 2.46 0.00 0.00 4.93
2287 11732 1.031571 TTGATGCATGGGGTTCGCTC 61.032 55.000 2.46 0.00 0.00 5.03
2288 11733 2.124151 ATGCATGGGGTTCGCTCC 60.124 61.111 0.00 0.00 38.58 4.70
2294 11739 3.448469 TGGGGTTCGCTCCAATTTT 57.552 47.368 0.00 0.00 46.71 1.82
2295 11740 1.253100 TGGGGTTCGCTCCAATTTTC 58.747 50.000 0.00 0.00 46.71 2.29
2296 11741 1.253100 GGGGTTCGCTCCAATTTTCA 58.747 50.000 0.00 0.00 37.80 2.69
2297 11742 1.616374 GGGGTTCGCTCCAATTTTCAA 59.384 47.619 0.00 0.00 37.80 2.69
2298 11743 2.036604 GGGGTTCGCTCCAATTTTCAAA 59.963 45.455 0.00 0.00 37.80 2.69
2299 11744 3.306710 GGGGTTCGCTCCAATTTTCAAAT 60.307 43.478 0.00 0.00 37.80 2.32
2300 11745 3.926527 GGGTTCGCTCCAATTTTCAAATC 59.073 43.478 0.00 0.00 0.00 2.17
2301 11746 4.555262 GGTTCGCTCCAATTTTCAAATCA 58.445 39.130 0.00 0.00 0.00 2.57
2302 11747 5.170748 GGTTCGCTCCAATTTTCAAATCAT 58.829 37.500 0.00 0.00 0.00 2.45
2303 11748 5.639082 GGTTCGCTCCAATTTTCAAATCATT 59.361 36.000 0.00 0.00 0.00 2.57
2304 11749 6.147656 GGTTCGCTCCAATTTTCAAATCATTT 59.852 34.615 0.00 0.00 0.00 2.32
2305 11750 6.709145 TCGCTCCAATTTTCAAATCATTTG 57.291 33.333 3.46 3.46 41.96 2.32
2306 11751 5.638657 TCGCTCCAATTTTCAAATCATTTGG 59.361 36.000 10.30 0.00 40.98 3.28
2307 11752 5.638657 CGCTCCAATTTTCAAATCATTTGGA 59.361 36.000 10.30 0.00 40.98 3.53
2308 11753 6.401367 CGCTCCAATTTTCAAATCATTTGGAC 60.401 38.462 10.30 0.00 40.98 4.02
2309 11754 6.427547 GCTCCAATTTTCAAATCATTTGGACA 59.572 34.615 10.30 0.00 40.98 4.02
2310 11755 7.120138 GCTCCAATTTTCAAATCATTTGGACAT 59.880 33.333 10.30 0.00 40.98 3.06
2311 11756 8.550710 TCCAATTTTCAAATCATTTGGACATC 57.449 30.769 10.30 0.00 40.98 3.06
2312 11757 8.377034 TCCAATTTTCAAATCATTTGGACATCT 58.623 29.630 10.30 0.00 40.98 2.90
2313 11758 8.447833 CCAATTTTCAAATCATTTGGACATCTG 58.552 33.333 10.30 2.60 40.98 2.90
2314 11759 9.210329 CAATTTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
2315 11760 8.997621 ATTTTCAAATCATTTGGACATCTGAG 57.002 30.769 10.30 0.00 40.98 3.35
2316 11761 6.519679 TTCAAATCATTTGGACATCTGAGG 57.480 37.500 10.30 0.00 40.98 3.86
2317 11762 5.818887 TCAAATCATTTGGACATCTGAGGA 58.181 37.500 10.30 0.00 40.98 3.71
2318 11763 5.884232 TCAAATCATTTGGACATCTGAGGAG 59.116 40.000 10.30 0.00 40.98 3.69
2319 11764 3.920231 TCATTTGGACATCTGAGGAGG 57.080 47.619 0.00 0.00 0.00 4.30
2320 11765 3.453868 TCATTTGGACATCTGAGGAGGA 58.546 45.455 0.00 0.00 0.00 3.71
2321 11766 3.453717 TCATTTGGACATCTGAGGAGGAG 59.546 47.826 0.00 0.00 0.00 3.69
2322 11767 1.198713 TTGGACATCTGAGGAGGAGC 58.801 55.000 0.00 0.00 0.00 4.70
2323 11768 0.337773 TGGACATCTGAGGAGGAGCT 59.662 55.000 0.00 0.00 0.00 4.09
2324 11769 1.039856 GGACATCTGAGGAGGAGCTC 58.960 60.000 4.71 4.71 0.00 4.09
2325 11770 1.411501 GGACATCTGAGGAGGAGCTCT 60.412 57.143 14.64 0.00 0.00 4.09
2326 11771 1.956477 GACATCTGAGGAGGAGCTCTC 59.044 57.143 14.64 9.01 41.71 3.20
2327 11772 1.287442 ACATCTGAGGAGGAGCTCTCA 59.713 52.381 14.64 8.43 44.19 3.27
2328 11773 1.958579 CATCTGAGGAGGAGCTCTCAG 59.041 57.143 19.64 19.64 44.19 3.35
2329 11774 0.395586 TCTGAGGAGGAGCTCTCAGC 60.396 60.000 20.49 10.08 44.19 4.26
2330 11775 0.683828 CTGAGGAGGAGCTCTCAGCA 60.684 60.000 14.64 9.54 45.56 4.41
2331 11776 0.251967 TGAGGAGGAGCTCTCAGCAA 60.252 55.000 14.64 0.00 45.56 3.91
2332 11777 0.901124 GAGGAGGAGCTCTCAGCAAA 59.099 55.000 14.64 0.00 45.56 3.68
2333 11778 1.277557 GAGGAGGAGCTCTCAGCAAAA 59.722 52.381 14.64 0.00 45.56 2.44
2334 11779 1.701847 AGGAGGAGCTCTCAGCAAAAA 59.298 47.619 14.64 0.00 45.56 1.94
2386 11831 9.569122 AGTTTACTGTTCATGTACTATTTTGGT 57.431 29.630 4.01 0.00 0.00 3.67
2387 11832 9.821662 GTTTACTGTTCATGTACTATTTTGGTC 57.178 33.333 4.01 0.00 0.00 4.02
2388 11833 8.556213 TTACTGTTCATGTACTATTTTGGTCC 57.444 34.615 4.01 0.00 0.00 4.46
2389 11834 5.642063 ACTGTTCATGTACTATTTTGGTCCG 59.358 40.000 4.01 0.00 0.00 4.79
2390 11835 5.795972 TGTTCATGTACTATTTTGGTCCGA 58.204 37.500 4.01 0.00 0.00 4.55
2391 11836 6.411376 TGTTCATGTACTATTTTGGTCCGAT 58.589 36.000 4.01 0.00 0.00 4.18
2392 11837 6.882140 TGTTCATGTACTATTTTGGTCCGATT 59.118 34.615 4.01 0.00 0.00 3.34
2393 11838 7.392113 TGTTCATGTACTATTTTGGTCCGATTT 59.608 33.333 4.01 0.00 0.00 2.17
2394 11839 7.315247 TCATGTACTATTTTGGTCCGATTTG 57.685 36.000 0.00 0.00 0.00 2.32
2395 11840 6.882140 TCATGTACTATTTTGGTCCGATTTGT 59.118 34.615 0.00 0.00 0.00 2.83
2396 11841 6.730960 TGTACTATTTTGGTCCGATTTGTC 57.269 37.500 0.00 0.00 0.00 3.18
2397 11842 6.469410 TGTACTATTTTGGTCCGATTTGTCT 58.531 36.000 0.00 0.00 0.00 3.41
2398 11843 6.938030 TGTACTATTTTGGTCCGATTTGTCTT 59.062 34.615 0.00 0.00 0.00 3.01
2399 11844 6.894339 ACTATTTTGGTCCGATTTGTCTTT 57.106 33.333 0.00 0.00 0.00 2.52
2400 11845 7.284919 ACTATTTTGGTCCGATTTGTCTTTT 57.715 32.000 0.00 0.00 0.00 2.27
2401 11846 7.722363 ACTATTTTGGTCCGATTTGTCTTTTT 58.278 30.769 0.00 0.00 0.00 1.94
2419 11864 4.623932 TTTTTCCTGAGAGCTGCTTAGA 57.376 40.909 2.53 0.00 32.19 2.10
2420 11865 4.833478 TTTTCCTGAGAGCTGCTTAGAT 57.167 40.909 2.53 0.00 32.19 1.98
2421 11866 3.815856 TTCCTGAGAGCTGCTTAGATG 57.184 47.619 2.53 0.00 32.19 2.90
2422 11867 2.744760 TCCTGAGAGCTGCTTAGATGT 58.255 47.619 2.53 0.00 32.19 3.06
2423 11868 3.102972 TCCTGAGAGCTGCTTAGATGTT 58.897 45.455 2.53 0.00 32.19 2.71
2424 11869 3.131933 TCCTGAGAGCTGCTTAGATGTTC 59.868 47.826 2.53 0.00 32.19 3.18
2425 11870 3.118847 CCTGAGAGCTGCTTAGATGTTCA 60.119 47.826 2.53 0.00 32.19 3.18
2426 11871 4.502016 CTGAGAGCTGCTTAGATGTTCAA 58.498 43.478 2.53 0.00 32.19 2.69
2427 11872 4.898320 TGAGAGCTGCTTAGATGTTCAAA 58.102 39.130 2.53 0.00 0.00 2.69
2428 11873 5.494724 TGAGAGCTGCTTAGATGTTCAAAT 58.505 37.500 2.53 0.00 0.00 2.32
2429 11874 5.353400 TGAGAGCTGCTTAGATGTTCAAATG 59.647 40.000 2.53 0.00 0.00 2.32
2430 11875 5.494724 AGAGCTGCTTAGATGTTCAAATGA 58.505 37.500 2.53 0.00 0.00 2.57
2431 11876 5.353678 AGAGCTGCTTAGATGTTCAAATGAC 59.646 40.000 2.53 0.00 0.00 3.06
2432 11877 5.005740 AGCTGCTTAGATGTTCAAATGACA 58.994 37.500 0.00 0.00 0.00 3.58
2433 11878 5.651139 AGCTGCTTAGATGTTCAAATGACAT 59.349 36.000 0.00 0.00 0.00 3.06
2434 11879 5.742453 GCTGCTTAGATGTTCAAATGACATG 59.258 40.000 0.00 0.00 0.00 3.21
2435 11880 6.403964 GCTGCTTAGATGTTCAAATGACATGA 60.404 38.462 0.00 0.00 0.00 3.07
2436 11881 7.451501 TGCTTAGATGTTCAAATGACATGAA 57.548 32.000 0.00 0.00 34.56 2.57
2437 11882 7.884257 TGCTTAGATGTTCAAATGACATGAAA 58.116 30.769 0.00 0.00 38.44 2.69
2438 11883 8.525316 TGCTTAGATGTTCAAATGACATGAAAT 58.475 29.630 0.00 0.00 38.44 2.17
2439 11884 9.362539 GCTTAGATGTTCAAATGACATGAAATT 57.637 29.630 0.00 0.00 38.44 1.82
2442 11887 8.542497 AGATGTTCAAATGACATGAAATTTGG 57.458 30.769 24.45 13.90 41.83 3.28
2443 11888 8.369424 AGATGTTCAAATGACATGAAATTTGGA 58.631 29.630 24.45 18.83 41.83 3.53
2444 11889 7.949903 TGTTCAAATGACATGAAATTTGGAG 57.050 32.000 24.45 10.33 41.83 3.86
2445 11890 6.424509 TGTTCAAATGACATGAAATTTGGAGC 59.575 34.615 24.45 18.34 41.83 4.70
2446 11891 5.162794 TCAAATGACATGAAATTTGGAGCG 58.837 37.500 24.45 9.85 41.83 5.03
2447 11892 3.788333 ATGACATGAAATTTGGAGCGG 57.212 42.857 0.00 0.00 0.00 5.52
2448 11893 1.818060 TGACATGAAATTTGGAGCGGG 59.182 47.619 0.00 0.00 0.00 6.13
2449 11894 0.532115 ACATGAAATTTGGAGCGGGC 59.468 50.000 0.00 0.00 0.00 6.13
2450 11895 0.179103 CATGAAATTTGGAGCGGGCC 60.179 55.000 0.00 0.00 0.00 5.80
2451 11896 0.324645 ATGAAATTTGGAGCGGGCCT 60.325 50.000 0.84 0.00 0.00 5.19
2452 11897 1.250154 TGAAATTTGGAGCGGGCCTG 61.250 55.000 7.41 7.41 0.00 4.85
2453 11898 0.965363 GAAATTTGGAGCGGGCCTGA 60.965 55.000 18.31 0.00 0.00 3.86
2454 11899 1.250840 AAATTTGGAGCGGGCCTGAC 61.251 55.000 18.31 8.30 0.00 3.51
2455 11900 3.976701 ATTTGGAGCGGGCCTGACG 62.977 63.158 18.31 5.46 0.00 4.35
2462 11907 2.745884 CGGGCCTGACGCATCAAA 60.746 61.111 5.28 0.00 40.31 2.69
2463 11908 2.114670 CGGGCCTGACGCATCAAAT 61.115 57.895 5.28 0.00 40.31 2.32
2464 11909 1.656818 CGGGCCTGACGCATCAAATT 61.657 55.000 5.28 0.00 40.31 1.82
2465 11910 0.179129 GGGCCTGACGCATCAAATTG 60.179 55.000 0.84 0.00 40.31 2.32
2466 11911 0.527565 GGCCTGACGCATCAAATTGT 59.472 50.000 0.00 0.00 40.31 2.71
2467 11912 1.468054 GGCCTGACGCATCAAATTGTC 60.468 52.381 0.00 0.00 40.31 3.18
2468 11913 1.470098 GCCTGACGCATCAAATTGTCT 59.530 47.619 0.00 0.00 37.47 3.41
2469 11914 2.677836 GCCTGACGCATCAAATTGTCTA 59.322 45.455 0.00 0.00 37.47 2.59
2470 11915 3.485877 GCCTGACGCATCAAATTGTCTAC 60.486 47.826 0.00 0.00 37.47 2.59
2471 11916 3.935203 CCTGACGCATCAAATTGTCTACT 59.065 43.478 0.00 0.00 33.30 2.57
2472 11917 5.109210 CCTGACGCATCAAATTGTCTACTA 58.891 41.667 0.00 0.00 33.30 1.82
2473 11918 5.005779 CCTGACGCATCAAATTGTCTACTAC 59.994 44.000 0.00 0.00 33.30 2.73
2474 11919 5.474825 TGACGCATCAAATTGTCTACTACA 58.525 37.500 0.00 0.00 35.88 2.74
2475 11920 6.090763 CTGACGCATCAAATTGTCTACTACAA 59.909 38.462 0.00 0.00 42.64 2.41
2476 11921 7.360017 CTGACGCATCAAATTGTCTACTACAAA 60.360 37.037 0.00 0.00 42.14 2.83
2530 11975 2.642154 TTTTTCTAACCGGGTGCAGA 57.358 45.000 0.00 3.87 0.00 4.26
2531 11976 2.871096 TTTTCTAACCGGGTGCAGAT 57.129 45.000 0.00 0.00 0.00 2.90
2532 11977 2.107950 TTTCTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
2533 11978 1.271856 TTCTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
2534 11979 0.824109 TCTAACCGGGTGCAGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
2535 11980 0.811616 CTAACCGGGTGCAGATGAGC 60.812 60.000 0.00 0.00 0.00 4.26
2536 11981 2.252072 TAACCGGGTGCAGATGAGCC 62.252 60.000 0.00 0.00 0.00 4.70
2537 11982 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
2538 11983 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
2539 11984 2.993008 GGGTGCAGATGAGCCTGA 59.007 61.111 0.00 0.00 36.29 3.86
2540 11985 1.530771 GGGTGCAGATGAGCCTGAT 59.469 57.895 0.00 0.00 36.29 2.90
2541 11986 0.106819 GGGTGCAGATGAGCCTGATT 60.107 55.000 0.00 0.00 36.29 2.57
2542 11987 1.141657 GGGTGCAGATGAGCCTGATTA 59.858 52.381 0.00 0.00 36.29 1.75
2543 11988 2.216898 GGTGCAGATGAGCCTGATTAC 58.783 52.381 0.00 0.00 36.29 1.89
2544 11989 2.216898 GTGCAGATGAGCCTGATTACC 58.783 52.381 0.00 0.00 36.29 2.85
2545 11990 1.839354 TGCAGATGAGCCTGATTACCA 59.161 47.619 0.00 0.00 36.29 3.25
2546 11991 2.239402 TGCAGATGAGCCTGATTACCAA 59.761 45.455 0.00 0.00 36.29 3.67
2547 11992 3.282021 GCAGATGAGCCTGATTACCAAA 58.718 45.455 0.00 0.00 36.29 3.28
2548 11993 3.696051 GCAGATGAGCCTGATTACCAAAA 59.304 43.478 0.00 0.00 36.29 2.44
2549 11994 4.439289 GCAGATGAGCCTGATTACCAAAAC 60.439 45.833 0.00 0.00 36.29 2.43
2550 11995 3.941483 AGATGAGCCTGATTACCAAAACG 59.059 43.478 0.00 0.00 0.00 3.60
2551 11996 1.810151 TGAGCCTGATTACCAAAACGC 59.190 47.619 0.00 0.00 0.00 4.84
2552 11997 1.132453 GAGCCTGATTACCAAAACGCC 59.868 52.381 0.00 0.00 0.00 5.68
2553 11998 0.172578 GCCTGATTACCAAAACGCCC 59.827 55.000 0.00 0.00 0.00 6.13
2554 11999 1.834188 CCTGATTACCAAAACGCCCT 58.166 50.000 0.00 0.00 0.00 5.19
2555 12000 2.942306 GCCTGATTACCAAAACGCCCTA 60.942 50.000 0.00 0.00 0.00 3.53
2556 12001 2.681344 CCTGATTACCAAAACGCCCTAC 59.319 50.000 0.00 0.00 0.00 3.18
2557 12002 3.606687 CTGATTACCAAAACGCCCTACT 58.393 45.455 0.00 0.00 0.00 2.57
2558 12003 4.007659 CTGATTACCAAAACGCCCTACTT 58.992 43.478 0.00 0.00 0.00 2.24
2559 12004 3.754323 TGATTACCAAAACGCCCTACTTG 59.246 43.478 0.00 0.00 0.00 3.16
2560 12005 2.188062 TACCAAAACGCCCTACTTGG 57.812 50.000 0.00 0.00 43.33 3.61
2561 12006 0.184211 ACCAAAACGCCCTACTTGGT 59.816 50.000 0.00 0.00 45.26 3.67
2562 12007 0.596082 CCAAAACGCCCTACTTGGTG 59.404 55.000 0.00 0.00 41.79 4.17
2563 12008 1.600023 CAAAACGCCCTACTTGGTGA 58.400 50.000 0.00 0.00 39.27 4.02
2564 12009 2.159382 CAAAACGCCCTACTTGGTGAT 58.841 47.619 0.00 0.00 39.27 3.06
2565 12010 3.340034 CAAAACGCCCTACTTGGTGATA 58.660 45.455 0.00 0.00 39.27 2.15
2566 12011 3.926058 AAACGCCCTACTTGGTGATAT 57.074 42.857 0.00 0.00 39.27 1.63
2567 12012 5.120399 CAAAACGCCCTACTTGGTGATATA 58.880 41.667 0.00 0.00 39.27 0.86
2568 12013 5.362105 AAACGCCCTACTTGGTGATATAA 57.638 39.130 0.00 0.00 39.27 0.98
2569 12014 5.362105 AACGCCCTACTTGGTGATATAAA 57.638 39.130 0.00 0.00 39.27 1.40
2570 12015 5.562298 ACGCCCTACTTGGTGATATAAAT 57.438 39.130 0.00 0.00 39.27 1.40
2571 12016 5.548406 ACGCCCTACTTGGTGATATAAATC 58.452 41.667 0.00 0.00 39.27 2.17
2572 12017 5.307196 ACGCCCTACTTGGTGATATAAATCT 59.693 40.000 0.00 0.00 39.27 2.40
2573 12018 6.183361 ACGCCCTACTTGGTGATATAAATCTT 60.183 38.462 0.00 0.00 39.27 2.40
2574 12019 6.147821 CGCCCTACTTGGTGATATAAATCTTG 59.852 42.308 0.00 0.00 38.18 3.02
2575 12020 6.998673 GCCCTACTTGGTGATATAAATCTTGT 59.001 38.462 0.00 0.00 32.93 3.16
2576 12021 8.154856 GCCCTACTTGGTGATATAAATCTTGTA 58.845 37.037 0.00 0.00 32.93 2.41
2591 12036 9.838339 ATAAATCTTGTATAAGTGTTGCTAGCT 57.162 29.630 17.23 0.00 35.38 3.32
2592 12037 7.545362 AATCTTGTATAAGTGTTGCTAGCTG 57.455 36.000 17.23 0.00 35.38 4.24
2593 12038 5.419542 TCTTGTATAAGTGTTGCTAGCTGG 58.580 41.667 17.23 0.00 35.38 4.85
2594 12039 4.137116 TGTATAAGTGTTGCTAGCTGGG 57.863 45.455 17.23 0.00 0.00 4.45
2595 12040 2.717639 ATAAGTGTTGCTAGCTGGGG 57.282 50.000 17.23 0.00 0.00 4.96
2596 12041 1.358152 TAAGTGTTGCTAGCTGGGGT 58.642 50.000 17.23 0.00 0.00 4.95
2597 12042 0.036875 AAGTGTTGCTAGCTGGGGTC 59.963 55.000 17.23 2.01 0.00 4.46
2598 12043 0.838122 AGTGTTGCTAGCTGGGGTCT 60.838 55.000 17.23 4.30 0.00 3.85
2599 12044 0.036875 GTGTTGCTAGCTGGGGTCTT 59.963 55.000 17.23 0.00 0.00 3.01
2600 12045 0.771127 TGTTGCTAGCTGGGGTCTTT 59.229 50.000 17.23 0.00 0.00 2.52
2601 12046 1.271379 TGTTGCTAGCTGGGGTCTTTC 60.271 52.381 17.23 0.00 0.00 2.62
2602 12047 1.003696 GTTGCTAGCTGGGGTCTTTCT 59.996 52.381 17.23 0.00 0.00 2.52
2603 12048 1.362224 TGCTAGCTGGGGTCTTTCTT 58.638 50.000 17.23 0.00 0.00 2.52
2604 12049 1.705186 TGCTAGCTGGGGTCTTTCTTT 59.295 47.619 17.23 0.00 0.00 2.52
2605 12050 2.087646 GCTAGCTGGGGTCTTTCTTTG 58.912 52.381 7.70 0.00 0.00 2.77
2606 12051 2.087646 CTAGCTGGGGTCTTTCTTTGC 58.912 52.381 0.00 0.00 0.00 3.68
2607 12052 0.480252 AGCTGGGGTCTTTCTTTGCT 59.520 50.000 0.00 0.00 0.00 3.91
2608 12053 0.600057 GCTGGGGTCTTTCTTTGCTG 59.400 55.000 0.00 0.00 0.00 4.41
2609 12054 0.600057 CTGGGGTCTTTCTTTGCTGC 59.400 55.000 0.00 0.00 0.00 5.25
2610 12055 0.185901 TGGGGTCTTTCTTTGCTGCT 59.814 50.000 0.00 0.00 0.00 4.24
2611 12056 0.600057 GGGGTCTTTCTTTGCTGCTG 59.400 55.000 0.00 0.00 0.00 4.41
2612 12057 0.038801 GGGTCTTTCTTTGCTGCTGC 60.039 55.000 8.89 8.89 40.20 5.25
2613 12058 0.957362 GGTCTTTCTTTGCTGCTGCT 59.043 50.000 17.00 0.00 40.48 4.24
2614 12059 1.339291 GGTCTTTCTTTGCTGCTGCTT 59.661 47.619 17.00 0.00 40.48 3.91
2615 12060 2.606551 GGTCTTTCTTTGCTGCTGCTTC 60.607 50.000 17.00 0.00 40.48 3.86
2616 12061 2.292845 GTCTTTCTTTGCTGCTGCTTCT 59.707 45.455 17.00 0.00 40.48 2.85
2617 12062 2.292569 TCTTTCTTTGCTGCTGCTTCTG 59.707 45.455 17.00 4.88 40.48 3.02
2618 12063 1.683943 TTCTTTGCTGCTGCTTCTGT 58.316 45.000 17.00 0.00 40.48 3.41
2619 12064 0.949397 TCTTTGCTGCTGCTTCTGTG 59.051 50.000 17.00 1.95 40.48 3.66
2620 12065 0.949397 CTTTGCTGCTGCTTCTGTGA 59.051 50.000 17.00 0.00 40.48 3.58
2621 12066 0.664761 TTTGCTGCTGCTTCTGTGAC 59.335 50.000 17.00 0.00 40.48 3.67
2622 12067 1.168407 TTGCTGCTGCTTCTGTGACC 61.168 55.000 17.00 0.00 40.48 4.02
2623 12068 2.331132 GCTGCTGCTTCTGTGACCC 61.331 63.158 8.53 0.00 36.03 4.46
2624 12069 2.031012 TGCTGCTTCTGTGACCCG 59.969 61.111 0.00 0.00 0.00 5.28
2625 12070 2.343758 GCTGCTTCTGTGACCCGA 59.656 61.111 0.00 0.00 0.00 5.14
2626 12071 1.301716 GCTGCTTCTGTGACCCGAA 60.302 57.895 0.00 0.00 0.00 4.30
2627 12072 0.674895 GCTGCTTCTGTGACCCGAAT 60.675 55.000 0.00 0.00 0.00 3.34
2628 12073 1.813513 CTGCTTCTGTGACCCGAATT 58.186 50.000 0.00 0.00 0.00 2.17
2629 12074 1.466167 CTGCTTCTGTGACCCGAATTG 59.534 52.381 0.00 0.00 0.00 2.32
2630 12075 1.202758 TGCTTCTGTGACCCGAATTGT 60.203 47.619 0.00 0.00 0.00 2.71
2631 12076 1.464997 GCTTCTGTGACCCGAATTGTC 59.535 52.381 0.00 0.00 0.00 3.18
2632 12077 2.766313 CTTCTGTGACCCGAATTGTCA 58.234 47.619 0.00 0.00 40.28 3.58
2633 12078 3.338249 CTTCTGTGACCCGAATTGTCAT 58.662 45.455 0.94 0.00 43.98 3.06
2634 12079 4.503910 CTTCTGTGACCCGAATTGTCATA 58.496 43.478 0.94 0.00 43.98 2.15
2635 12080 4.123497 TCTGTGACCCGAATTGTCATAG 57.877 45.455 12.29 12.29 46.93 2.23
2636 12081 3.513912 TCTGTGACCCGAATTGTCATAGT 59.486 43.478 15.89 0.00 46.17 2.12
2637 12082 3.595173 TGTGACCCGAATTGTCATAGTG 58.405 45.455 0.94 0.00 43.98 2.74
2638 12083 2.936498 GTGACCCGAATTGTCATAGTGG 59.064 50.000 0.94 0.00 43.98 4.00
2639 12084 2.835156 TGACCCGAATTGTCATAGTGGA 59.165 45.455 0.00 0.00 37.80 4.02
2640 12085 3.262151 TGACCCGAATTGTCATAGTGGAA 59.738 43.478 0.00 0.00 37.80 3.53
2641 12086 3.606687 ACCCGAATTGTCATAGTGGAAC 58.393 45.455 0.00 0.00 0.00 3.62
2642 12087 2.943033 CCCGAATTGTCATAGTGGAACC 59.057 50.000 0.00 0.00 37.80 3.62
2643 12088 3.370527 CCCGAATTGTCATAGTGGAACCT 60.371 47.826 0.00 0.00 37.80 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.006832 GATACCGCGCTGTGTCATTT 58.993 50.000 20.70 0.00 0.00 2.32
7 8 1.153842 CTGATACCGCGCTGTGTCA 60.154 57.895 25.09 25.09 35.45 3.58
9 10 1.884075 TTCCTGATACCGCGCTGTGT 61.884 55.000 15.24 7.97 0.00 3.72
10 11 1.153647 TTCCTGATACCGCGCTGTG 60.154 57.895 15.24 0.41 0.00 3.66
11 12 1.153628 GTTCCTGATACCGCGCTGT 60.154 57.895 10.01 10.01 0.00 4.40
17 18 4.994852 TGAACTTCTTTGTTCCTGATACCG 59.005 41.667 5.15 0.00 43.96 4.02
19 20 9.020813 GTTTTTGAACTTCTTTGTTCCTGATAC 57.979 33.333 5.15 0.00 43.96 2.24
23 24 6.162777 TGGTTTTTGAACTTCTTTGTTCCTG 58.837 36.000 5.15 0.00 43.96 3.86
29 30 5.164002 CGGTGTTGGTTTTTGAACTTCTTTG 60.164 40.000 0.00 0.00 0.00 2.77
30 31 4.926832 CGGTGTTGGTTTTTGAACTTCTTT 59.073 37.500 0.00 0.00 0.00 2.52
33 34 3.183754 CCGGTGTTGGTTTTTGAACTTC 58.816 45.455 0.00 0.00 0.00 3.01
43 44 0.750182 CAAGTGGACCGGTGTTGGTT 60.750 55.000 14.63 0.00 44.01 3.67
46 47 1.172180 ATGCAAGTGGACCGGTGTTG 61.172 55.000 14.63 11.50 0.00 3.33
51 52 1.414181 AGATCTATGCAAGTGGACCGG 59.586 52.381 0.00 0.00 0.00 5.28
74 75 3.374058 GTCACTCATTTTATGGTGGACCG 59.626 47.826 0.00 0.00 39.43 4.79
101 103 0.661552 CCGATTCTTGCTGCCATCAG 59.338 55.000 0.00 0.00 43.16 2.90
103 105 1.099879 AGCCGATTCTTGCTGCCATC 61.100 55.000 0.00 0.00 36.23 3.51
246 262 7.270757 TGTTGAATGCTAGCTGTTAAGAAAA 57.729 32.000 17.23 0.00 0.00 2.29
248 264 6.623549 GCATGTTGAATGCTAGCTGTTAAGAA 60.624 38.462 17.23 0.00 41.52 2.52
531 555 3.816523 TCGTTTTTAAAGGGATCTGCGTT 59.183 39.130 0.00 0.00 0.00 4.84
585 609 1.956869 TGCTTCTCCAGGATGAGGAA 58.043 50.000 0.00 0.00 39.69 3.36
687 5178 1.026182 TAGAAGCCGACTACGCCGAA 61.026 55.000 0.00 0.00 38.29 4.30
745 5252 3.727673 CGGCATTTGGTTCAAGTATGACG 60.728 47.826 6.28 6.28 36.97 4.35
754 5261 1.883275 CCAAGTACGGCATTTGGTTCA 59.117 47.619 3.27 0.00 38.80 3.18
758 5265 2.676342 GAGTACCAAGTACGGCATTTGG 59.324 50.000 8.81 8.81 46.78 3.28
762 5269 3.531538 CAATGAGTACCAAGTACGGCAT 58.468 45.455 9.16 9.16 43.05 4.40
821 5373 0.608640 GGTCCGATCCAACTGTGAGT 59.391 55.000 0.00 0.00 0.00 3.41
903 5464 0.321671 CGATTGTGGACTGGTGGAGT 59.678 55.000 0.00 0.00 37.76 3.85
1197 5795 2.302445 CCATCCTAGGGAGAGCATTGAG 59.698 54.545 9.46 0.00 34.05 3.02
1311 5919 2.361737 GTTCCCAGGCTCCTTGGC 60.362 66.667 1.32 0.00 42.15 4.52
1491 6157 6.497259 GGTTCATACAGGATAGATACTCCCAA 59.503 42.308 0.00 0.00 32.89 4.12
1641 10452 6.764308 AGCAATAGCATAGACACACAATTT 57.236 33.333 0.00 0.00 45.49 1.82
1645 10456 5.917462 ACATAGCAATAGCATAGACACACA 58.083 37.500 0.00 0.00 45.49 3.72
1814 10851 7.823745 AAGATCAAAATATTAAGCCACGGAT 57.176 32.000 0.00 0.00 0.00 4.18
1874 10911 3.316308 GCTTCCGAAATATGCCTGAACAT 59.684 43.478 0.00 0.00 0.00 2.71
1875 10912 2.682856 GCTTCCGAAATATGCCTGAACA 59.317 45.455 0.00 0.00 0.00 3.18
1876 10913 2.945668 AGCTTCCGAAATATGCCTGAAC 59.054 45.455 0.00 0.00 0.00 3.18
1877 10914 2.945008 CAGCTTCCGAAATATGCCTGAA 59.055 45.455 0.00 0.00 0.00 3.02
1878 10915 2.564771 CAGCTTCCGAAATATGCCTGA 58.435 47.619 0.00 0.00 0.00 3.86
1956 11095 9.537848 CAATATTCGTGTTGAAGTAGTAAAACC 57.462 33.333 0.00 0.00 40.65 3.27
1962 11138 8.495949 CAGAAACAATATTCGTGTTGAAGTAGT 58.504 33.333 0.00 0.00 40.65 2.73
1977 11153 7.054491 ACTTGCCAGAAAACAGAAACAATAT 57.946 32.000 0.00 0.00 0.00 1.28
2024 11463 5.380043 AGCTCTTTTCTCTGAAATGGTTGA 58.620 37.500 0.00 0.00 0.00 3.18
2035 11474 3.320256 CCAAAAGCCAAGCTCTTTTCTCT 59.680 43.478 8.29 0.00 40.57 3.10
2140 11585 7.490962 TGGAATTTCATATATCACCAACGTC 57.509 36.000 0.00 0.00 0.00 4.34
2142 11587 8.327941 AGATGGAATTTCATATATCACCAACG 57.672 34.615 0.00 0.00 0.00 4.10
2155 11600 3.009363 TCAGGTGCAGAGATGGAATTTCA 59.991 43.478 0.00 0.00 28.05 2.69
2156 11601 3.614092 TCAGGTGCAGAGATGGAATTTC 58.386 45.455 0.00 0.00 0.00 2.17
2157 11602 3.618351 CTCAGGTGCAGAGATGGAATTT 58.382 45.455 0.00 0.00 35.09 1.82
2158 11603 2.683152 GCTCAGGTGCAGAGATGGAATT 60.683 50.000 5.67 0.00 35.09 2.17
2159 11604 1.134159 GCTCAGGTGCAGAGATGGAAT 60.134 52.381 5.67 0.00 35.09 3.01
2160 11605 0.251354 GCTCAGGTGCAGAGATGGAA 59.749 55.000 5.67 0.00 35.09 3.53
2161 11606 0.616964 AGCTCAGGTGCAGAGATGGA 60.617 55.000 5.67 0.00 35.09 3.41
2162 11607 0.179078 GAGCTCAGGTGCAGAGATGG 60.179 60.000 9.40 0.00 35.09 3.51
2163 11608 0.535797 TGAGCTCAGGTGCAGAGATG 59.464 55.000 13.74 0.00 35.09 2.90
2164 11609 1.498264 ATGAGCTCAGGTGCAGAGAT 58.502 50.000 22.96 0.00 35.09 2.75
2165 11610 1.273759 AATGAGCTCAGGTGCAGAGA 58.726 50.000 22.96 0.00 35.09 3.10
2166 11611 1.738350 CAAATGAGCTCAGGTGCAGAG 59.262 52.381 22.96 2.27 36.21 3.35
2167 11612 1.817357 CAAATGAGCTCAGGTGCAGA 58.183 50.000 22.96 0.00 34.99 4.26
2168 11613 0.170561 GCAAATGAGCTCAGGTGCAG 59.829 55.000 33.43 18.17 38.62 4.41
2169 11614 0.537828 TGCAAATGAGCTCAGGTGCA 60.538 50.000 35.60 35.60 43.12 4.57
2170 11615 0.109412 GTGCAAATGAGCTCAGGTGC 60.109 55.000 32.50 32.50 38.99 5.01
2171 11616 0.524862 GGTGCAAATGAGCTCAGGTG 59.475 55.000 22.96 21.29 34.99 4.00
2172 11617 0.403271 AGGTGCAAATGAGCTCAGGT 59.597 50.000 22.96 9.77 34.99 4.00
2173 11618 0.809385 CAGGTGCAAATGAGCTCAGG 59.191 55.000 22.96 14.68 34.99 3.86
2174 11619 0.170561 GCAGGTGCAAATGAGCTCAG 59.829 55.000 22.96 9.85 41.59 3.35
2175 11620 1.579964 CGCAGGTGCAAATGAGCTCA 61.580 55.000 20.79 20.79 42.21 4.26
2176 11621 1.136147 CGCAGGTGCAAATGAGCTC 59.864 57.895 6.82 6.82 42.21 4.09
2177 11622 2.986306 GCGCAGGTGCAAATGAGCT 61.986 57.895 17.29 0.00 42.21 4.09
2178 11623 2.505557 GCGCAGGTGCAAATGAGC 60.506 61.111 0.30 11.38 42.21 4.26
2179 11624 3.271014 AGCGCAGGTGCAAATGAG 58.729 55.556 11.47 1.54 42.21 2.90
2188 11633 4.134623 TTTTTCGTCAGCGCAGGT 57.865 50.000 11.47 0.00 41.48 4.00
2239 11684 9.337396 TGTCTACCGCATAATAATTTTTCAGAT 57.663 29.630 0.00 0.00 0.00 2.90
2240 11685 8.725405 TGTCTACCGCATAATAATTTTTCAGA 57.275 30.769 0.00 0.00 0.00 3.27
2241 11686 9.950680 ATTGTCTACCGCATAATAATTTTTCAG 57.049 29.630 0.00 0.00 0.00 3.02
2247 11692 9.897744 CATCAAATTGTCTACCGCATAATAATT 57.102 29.630 0.00 0.00 0.00 1.40
2248 11693 8.023128 GCATCAAATTGTCTACCGCATAATAAT 58.977 33.333 0.00 0.00 0.00 1.28
2249 11694 7.012799 TGCATCAAATTGTCTACCGCATAATAA 59.987 33.333 0.00 0.00 0.00 1.40
2250 11695 6.484977 TGCATCAAATTGTCTACCGCATAATA 59.515 34.615 0.00 0.00 0.00 0.98
2251 11696 5.299028 TGCATCAAATTGTCTACCGCATAAT 59.701 36.000 0.00 0.00 0.00 1.28
2252 11697 4.637977 TGCATCAAATTGTCTACCGCATAA 59.362 37.500 0.00 0.00 0.00 1.90
2253 11698 4.195416 TGCATCAAATTGTCTACCGCATA 58.805 39.130 0.00 0.00 0.00 3.14
2254 11699 3.016031 TGCATCAAATTGTCTACCGCAT 58.984 40.909 0.00 0.00 0.00 4.73
2255 11700 2.431454 TGCATCAAATTGTCTACCGCA 58.569 42.857 0.00 0.00 0.00 5.69
2256 11701 3.365832 CATGCATCAAATTGTCTACCGC 58.634 45.455 0.00 0.00 0.00 5.68
2257 11702 3.243168 CCCATGCATCAAATTGTCTACCG 60.243 47.826 0.00 0.00 0.00 4.02
2258 11703 3.068590 CCCCATGCATCAAATTGTCTACC 59.931 47.826 0.00 0.00 0.00 3.18
2259 11704 3.701040 ACCCCATGCATCAAATTGTCTAC 59.299 43.478 0.00 0.00 0.00 2.59
2260 11705 3.979911 ACCCCATGCATCAAATTGTCTA 58.020 40.909 0.00 0.00 0.00 2.59
2261 11706 2.823959 ACCCCATGCATCAAATTGTCT 58.176 42.857 0.00 0.00 0.00 3.41
2262 11707 3.524541 GAACCCCATGCATCAAATTGTC 58.475 45.455 0.00 0.00 0.00 3.18
2263 11708 2.094078 CGAACCCCATGCATCAAATTGT 60.094 45.455 0.00 0.00 0.00 2.71
2264 11709 2.542597 CGAACCCCATGCATCAAATTG 58.457 47.619 0.00 0.00 0.00 2.32
2265 11710 1.134729 GCGAACCCCATGCATCAAATT 60.135 47.619 0.00 0.00 0.00 1.82
2266 11711 0.461135 GCGAACCCCATGCATCAAAT 59.539 50.000 0.00 0.00 0.00 2.32
2267 11712 0.611618 AGCGAACCCCATGCATCAAA 60.612 50.000 0.00 0.00 0.00 2.69
2268 11713 1.001020 AGCGAACCCCATGCATCAA 60.001 52.632 0.00 0.00 0.00 2.57
2269 11714 1.451927 GAGCGAACCCCATGCATCA 60.452 57.895 0.00 0.00 0.00 3.07
2270 11715 2.189499 GGAGCGAACCCCATGCATC 61.189 63.158 0.00 0.00 0.00 3.91
2271 11716 2.124151 GGAGCGAACCCCATGCAT 60.124 61.111 0.00 0.00 0.00 3.96
2272 11717 2.497792 ATTGGAGCGAACCCCATGCA 62.498 55.000 0.00 0.00 31.66 3.96
2273 11718 1.322538 AATTGGAGCGAACCCCATGC 61.323 55.000 0.00 0.00 31.66 4.06
2274 11719 1.185315 AAATTGGAGCGAACCCCATG 58.815 50.000 0.00 0.00 31.66 3.66
2275 11720 1.824852 GAAAATTGGAGCGAACCCCAT 59.175 47.619 0.00 0.00 31.66 4.00
2276 11721 1.253100 GAAAATTGGAGCGAACCCCA 58.747 50.000 0.00 0.00 0.00 4.96
2277 11722 1.253100 TGAAAATTGGAGCGAACCCC 58.747 50.000 0.00 0.00 0.00 4.95
2278 11723 3.378911 TTTGAAAATTGGAGCGAACCC 57.621 42.857 0.00 0.00 0.00 4.11
2279 11724 4.555262 TGATTTGAAAATTGGAGCGAACC 58.445 39.130 0.00 0.00 0.00 3.62
2280 11725 6.710692 AATGATTTGAAAATTGGAGCGAAC 57.289 33.333 0.00 0.00 0.00 3.95
2281 11726 6.147492 CCAAATGATTTGAAAATTGGAGCGAA 59.853 34.615 18.82 0.00 43.26 4.70
2282 11727 5.638657 CCAAATGATTTGAAAATTGGAGCGA 59.361 36.000 18.82 0.00 43.26 4.93
2283 11728 5.638657 TCCAAATGATTTGAAAATTGGAGCG 59.361 36.000 18.82 0.00 43.26 5.03
2284 11729 6.427547 TGTCCAAATGATTTGAAAATTGGAGC 59.572 34.615 18.82 11.06 43.26 4.70
2285 11730 7.966246 TGTCCAAATGATTTGAAAATTGGAG 57.034 32.000 18.82 0.00 43.26 3.86
2286 11731 8.377034 AGATGTCCAAATGATTTGAAAATTGGA 58.623 29.630 18.82 4.03 43.26 3.53
2287 11732 8.447833 CAGATGTCCAAATGATTTGAAAATTGG 58.552 33.333 18.82 1.54 43.26 3.16
2288 11733 9.210329 TCAGATGTCCAAATGATTTGAAAATTG 57.790 29.630 18.82 9.76 43.26 2.32
2289 11734 9.431887 CTCAGATGTCCAAATGATTTGAAAATT 57.568 29.630 18.82 0.50 43.26 1.82
2290 11735 8.038944 CCTCAGATGTCCAAATGATTTGAAAAT 58.961 33.333 18.82 0.00 43.26 1.82
2291 11736 7.233144 TCCTCAGATGTCCAAATGATTTGAAAA 59.767 33.333 18.82 0.00 43.26 2.29
2292 11737 6.720748 TCCTCAGATGTCCAAATGATTTGAAA 59.279 34.615 18.82 4.37 43.26 2.69
2293 11738 6.247676 TCCTCAGATGTCCAAATGATTTGAA 58.752 36.000 18.82 0.00 43.26 2.69
2294 11739 5.818887 TCCTCAGATGTCCAAATGATTTGA 58.181 37.500 18.82 0.00 43.26 2.69
2295 11740 5.067413 CCTCCTCAGATGTCCAAATGATTTG 59.933 44.000 10.84 10.84 40.32 2.32
2296 11741 5.044624 TCCTCCTCAGATGTCCAAATGATTT 60.045 40.000 0.00 0.00 0.00 2.17
2297 11742 4.476113 TCCTCCTCAGATGTCCAAATGATT 59.524 41.667 0.00 0.00 0.00 2.57
2298 11743 4.042884 TCCTCCTCAGATGTCCAAATGAT 58.957 43.478 0.00 0.00 0.00 2.45
2299 11744 3.453717 CTCCTCCTCAGATGTCCAAATGA 59.546 47.826 0.00 0.00 0.00 2.57
2300 11745 3.806380 CTCCTCCTCAGATGTCCAAATG 58.194 50.000 0.00 0.00 0.00 2.32
2301 11746 2.172293 GCTCCTCCTCAGATGTCCAAAT 59.828 50.000 0.00 0.00 0.00 2.32
2302 11747 1.556911 GCTCCTCCTCAGATGTCCAAA 59.443 52.381 0.00 0.00 0.00 3.28
2303 11748 1.198713 GCTCCTCCTCAGATGTCCAA 58.801 55.000 0.00 0.00 0.00 3.53
2304 11749 0.337773 AGCTCCTCCTCAGATGTCCA 59.662 55.000 0.00 0.00 0.00 4.02
2305 11750 1.039856 GAGCTCCTCCTCAGATGTCC 58.960 60.000 0.87 0.00 0.00 4.02
2306 11751 1.956477 GAGAGCTCCTCCTCAGATGTC 59.044 57.143 10.93 0.00 35.87 3.06
2307 11752 1.287442 TGAGAGCTCCTCCTCAGATGT 59.713 52.381 10.93 0.00 41.25 3.06
2308 11753 1.958579 CTGAGAGCTCCTCCTCAGATG 59.041 57.143 20.61 0.70 44.20 2.90
2309 11754 1.755265 GCTGAGAGCTCCTCCTCAGAT 60.755 57.143 26.49 0.75 44.20 2.90
2310 11755 0.395586 GCTGAGAGCTCCTCCTCAGA 60.396 60.000 26.49 3.47 44.20 3.27
2311 11756 0.683828 TGCTGAGAGCTCCTCCTCAG 60.684 60.000 20.81 20.81 42.97 3.35
2312 11757 0.251967 TTGCTGAGAGCTCCTCCTCA 60.252 55.000 10.93 6.66 42.97 3.86
2313 11758 0.901124 TTTGCTGAGAGCTCCTCCTC 59.099 55.000 10.93 1.45 42.97 3.71
2314 11759 1.356124 TTTTGCTGAGAGCTCCTCCT 58.644 50.000 10.93 0.00 42.97 3.69
2315 11760 2.191128 TTTTTGCTGAGAGCTCCTCC 57.809 50.000 10.93 0.37 42.97 4.30
2360 11805 9.569122 ACCAAAATAGTACATGAACAGTAAACT 57.431 29.630 0.00 0.00 0.00 2.66
2361 11806 9.821662 GACCAAAATAGTACATGAACAGTAAAC 57.178 33.333 0.00 0.00 0.00 2.01
2362 11807 9.005777 GGACCAAAATAGTACATGAACAGTAAA 57.994 33.333 0.00 0.00 0.00 2.01
2363 11808 7.332430 CGGACCAAAATAGTACATGAACAGTAA 59.668 37.037 0.00 0.00 0.00 2.24
2364 11809 6.814644 CGGACCAAAATAGTACATGAACAGTA 59.185 38.462 0.00 0.00 0.00 2.74
2365 11810 5.642063 CGGACCAAAATAGTACATGAACAGT 59.358 40.000 0.00 0.00 0.00 3.55
2366 11811 5.872617 TCGGACCAAAATAGTACATGAACAG 59.127 40.000 0.00 0.00 0.00 3.16
2367 11812 5.795972 TCGGACCAAAATAGTACATGAACA 58.204 37.500 0.00 0.00 0.00 3.18
2368 11813 6.920569 ATCGGACCAAAATAGTACATGAAC 57.079 37.500 0.00 0.00 0.00 3.18
2369 11814 7.392113 ACAAATCGGACCAAAATAGTACATGAA 59.608 33.333 0.00 0.00 0.00 2.57
2370 11815 6.882140 ACAAATCGGACCAAAATAGTACATGA 59.118 34.615 0.00 0.00 0.00 3.07
2371 11816 7.065803 AGACAAATCGGACCAAAATAGTACATG 59.934 37.037 0.00 0.00 0.00 3.21
2372 11817 7.110155 AGACAAATCGGACCAAAATAGTACAT 58.890 34.615 0.00 0.00 0.00 2.29
2373 11818 6.469410 AGACAAATCGGACCAAAATAGTACA 58.531 36.000 0.00 0.00 0.00 2.90
2374 11819 6.980051 AGACAAATCGGACCAAAATAGTAC 57.020 37.500 0.00 0.00 0.00 2.73
2375 11820 7.989416 AAAGACAAATCGGACCAAAATAGTA 57.011 32.000 0.00 0.00 0.00 1.82
2376 11821 6.894339 AAAGACAAATCGGACCAAAATAGT 57.106 33.333 0.00 0.00 0.00 2.12
2398 11843 4.623932 TCTAAGCAGCTCTCAGGAAAAA 57.376 40.909 0.00 0.00 0.00 1.94
2399 11844 4.019860 ACATCTAAGCAGCTCTCAGGAAAA 60.020 41.667 0.00 0.00 0.00 2.29
2400 11845 3.517100 ACATCTAAGCAGCTCTCAGGAAA 59.483 43.478 0.00 0.00 0.00 3.13
2401 11846 3.102972 ACATCTAAGCAGCTCTCAGGAA 58.897 45.455 0.00 0.00 0.00 3.36
2402 11847 2.744760 ACATCTAAGCAGCTCTCAGGA 58.255 47.619 0.00 0.00 0.00 3.86
2403 11848 3.118847 TGAACATCTAAGCAGCTCTCAGG 60.119 47.826 0.00 0.00 0.00 3.86
2404 11849 4.120792 TGAACATCTAAGCAGCTCTCAG 57.879 45.455 0.00 0.00 0.00 3.35
2405 11850 4.541973 TTGAACATCTAAGCAGCTCTCA 57.458 40.909 0.00 0.00 0.00 3.27
2406 11851 5.583854 TCATTTGAACATCTAAGCAGCTCTC 59.416 40.000 0.00 0.00 0.00 3.20
2407 11852 5.353678 GTCATTTGAACATCTAAGCAGCTCT 59.646 40.000 0.00 0.00 0.00 4.09
2408 11853 5.122869 TGTCATTTGAACATCTAAGCAGCTC 59.877 40.000 0.00 0.00 0.00 4.09
2409 11854 5.005740 TGTCATTTGAACATCTAAGCAGCT 58.994 37.500 0.00 0.00 0.00 4.24
2410 11855 5.300969 TGTCATTTGAACATCTAAGCAGC 57.699 39.130 0.00 0.00 0.00 5.25
2411 11856 7.080353 TCATGTCATTTGAACATCTAAGCAG 57.920 36.000 0.00 0.00 0.00 4.24
2412 11857 7.451501 TTCATGTCATTTGAACATCTAAGCA 57.548 32.000 0.00 0.00 0.00 3.91
2413 11858 8.922058 ATTTCATGTCATTTGAACATCTAAGC 57.078 30.769 0.00 0.00 33.03 3.09
2416 11861 9.642327 CCAAATTTCATGTCATTTGAACATCTA 57.358 29.630 23.04 0.00 41.18 1.98
2417 11862 8.369424 TCCAAATTTCATGTCATTTGAACATCT 58.631 29.630 23.04 0.00 41.18 2.90
2418 11863 8.537049 TCCAAATTTCATGTCATTTGAACATC 57.463 30.769 23.04 0.00 41.18 3.06
2419 11864 7.118680 GCTCCAAATTTCATGTCATTTGAACAT 59.881 33.333 23.04 0.00 41.18 2.71
2420 11865 6.424509 GCTCCAAATTTCATGTCATTTGAACA 59.575 34.615 23.04 12.10 41.18 3.18
2421 11866 6.400303 CGCTCCAAATTTCATGTCATTTGAAC 60.400 38.462 23.04 14.94 41.18 3.18
2422 11867 5.634439 CGCTCCAAATTTCATGTCATTTGAA 59.366 36.000 23.04 10.61 41.18 2.69
2423 11868 5.162794 CGCTCCAAATTTCATGTCATTTGA 58.837 37.500 23.04 13.68 41.18 2.69
2424 11869 4.327898 CCGCTCCAAATTTCATGTCATTTG 59.672 41.667 18.13 18.13 39.25 2.32
2425 11870 4.497300 CCGCTCCAAATTTCATGTCATTT 58.503 39.130 0.00 0.00 0.00 2.32
2426 11871 3.119029 CCCGCTCCAAATTTCATGTCATT 60.119 43.478 0.00 0.00 0.00 2.57
2427 11872 2.428171 CCCGCTCCAAATTTCATGTCAT 59.572 45.455 0.00 0.00 0.00 3.06
2428 11873 1.818060 CCCGCTCCAAATTTCATGTCA 59.182 47.619 0.00 0.00 0.00 3.58
2429 11874 1.469767 GCCCGCTCCAAATTTCATGTC 60.470 52.381 0.00 0.00 0.00 3.06
2430 11875 0.532115 GCCCGCTCCAAATTTCATGT 59.468 50.000 0.00 0.00 0.00 3.21
2431 11876 0.179103 GGCCCGCTCCAAATTTCATG 60.179 55.000 0.00 0.00 0.00 3.07
2432 11877 0.324645 AGGCCCGCTCCAAATTTCAT 60.325 50.000 0.00 0.00 0.00 2.57
2433 11878 1.076549 AGGCCCGCTCCAAATTTCA 59.923 52.632 0.00 0.00 0.00 2.69
2434 11879 0.965363 TCAGGCCCGCTCCAAATTTC 60.965 55.000 0.00 0.00 0.00 2.17
2435 11880 1.076549 TCAGGCCCGCTCCAAATTT 59.923 52.632 0.00 0.00 0.00 1.82
2436 11881 1.678970 GTCAGGCCCGCTCCAAATT 60.679 57.895 0.00 0.00 0.00 1.82
2437 11882 2.044946 GTCAGGCCCGCTCCAAAT 60.045 61.111 0.00 0.00 0.00 2.32
2438 11883 4.697756 CGTCAGGCCCGCTCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
2445 11890 1.656818 AATTTGATGCGTCAGGCCCG 61.657 55.000 8.93 0.00 42.61 6.13
2446 11891 0.179129 CAATTTGATGCGTCAGGCCC 60.179 55.000 8.93 0.00 42.61 5.80
2447 11892 0.527565 ACAATTTGATGCGTCAGGCC 59.472 50.000 8.93 0.00 42.61 5.19
2448 11893 1.470098 AGACAATTTGATGCGTCAGGC 59.530 47.619 8.93 0.00 43.96 4.85
2449 11894 3.935203 AGTAGACAATTTGATGCGTCAGG 59.065 43.478 8.93 3.39 35.39 3.86
2450 11895 5.576774 TGTAGTAGACAATTTGATGCGTCAG 59.423 40.000 8.93 0.00 34.15 3.51
2451 11896 5.474825 TGTAGTAGACAATTTGATGCGTCA 58.525 37.500 3.97 3.97 34.15 4.35
2452 11897 6.403333 TTGTAGTAGACAATTTGATGCGTC 57.597 37.500 2.79 0.00 43.30 5.19
2511 11956 2.642154 TCTGCACCCGGTTAGAAAAA 57.358 45.000 0.00 0.00 0.00 1.94
2512 11957 2.039216 TCATCTGCACCCGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
2513 11958 1.626321 TCATCTGCACCCGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
2514 11959 1.207089 CTCATCTGCACCCGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
2515 11960 0.824109 CTCATCTGCACCCGGTTAGA 59.176 55.000 0.00 4.22 0.00 2.10
2516 11961 0.811616 GCTCATCTGCACCCGGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
2517 11962 1.220749 GCTCATCTGCACCCGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
2518 11963 2.045926 GCTCATCTGCACCCGGTT 60.046 61.111 0.00 0.00 0.00 4.44
2519 11964 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
2520 11965 3.790437 AGGCTCATCTGCACCCGG 61.790 66.667 0.00 0.00 34.04 5.73
2521 11966 2.321263 ATCAGGCTCATCTGCACCCG 62.321 60.000 0.00 0.00 34.91 5.28
2522 11967 0.106819 AATCAGGCTCATCTGCACCC 60.107 55.000 0.00 0.00 34.91 4.61
2523 11968 2.216898 GTAATCAGGCTCATCTGCACC 58.783 52.381 0.00 0.00 34.91 5.01
2524 11969 2.216898 GGTAATCAGGCTCATCTGCAC 58.783 52.381 0.00 0.00 34.91 4.57
2525 11970 1.839354 TGGTAATCAGGCTCATCTGCA 59.161 47.619 0.00 0.00 34.91 4.41
2526 11971 2.627515 TGGTAATCAGGCTCATCTGC 57.372 50.000 0.00 0.00 34.91 4.26
2527 11972 4.201851 CGTTTTGGTAATCAGGCTCATCTG 60.202 45.833 0.00 0.00 36.17 2.90
2528 11973 3.941483 CGTTTTGGTAATCAGGCTCATCT 59.059 43.478 0.00 0.00 0.00 2.90
2529 11974 3.487544 GCGTTTTGGTAATCAGGCTCATC 60.488 47.826 0.00 0.00 0.00 2.92
2530 11975 2.423538 GCGTTTTGGTAATCAGGCTCAT 59.576 45.455 0.00 0.00 0.00 2.90
2531 11976 1.810151 GCGTTTTGGTAATCAGGCTCA 59.190 47.619 0.00 0.00 0.00 4.26
2532 11977 1.132453 GGCGTTTTGGTAATCAGGCTC 59.868 52.381 0.00 0.00 0.00 4.70
2533 11978 1.173913 GGCGTTTTGGTAATCAGGCT 58.826 50.000 0.00 0.00 0.00 4.58
2534 11979 0.172578 GGGCGTTTTGGTAATCAGGC 59.827 55.000 0.00 0.00 0.00 4.85
2535 11980 1.834188 AGGGCGTTTTGGTAATCAGG 58.166 50.000 0.00 0.00 0.00 3.86
2536 11981 3.606687 AGTAGGGCGTTTTGGTAATCAG 58.393 45.455 0.00 0.00 0.00 2.90
2537 11982 3.706600 AGTAGGGCGTTTTGGTAATCA 57.293 42.857 0.00 0.00 0.00 2.57
2538 11983 3.128068 CCAAGTAGGGCGTTTTGGTAATC 59.872 47.826 12.37 0.00 36.25 1.75
2539 11984 3.086282 CCAAGTAGGGCGTTTTGGTAAT 58.914 45.455 12.37 0.00 36.25 1.89
2540 11985 2.506444 CCAAGTAGGGCGTTTTGGTAA 58.494 47.619 12.37 0.00 36.25 2.85
2541 11986 2.188062 CCAAGTAGGGCGTTTTGGTA 57.812 50.000 12.37 0.00 36.25 3.25
2542 11987 0.184211 ACCAAGTAGGGCGTTTTGGT 59.816 50.000 17.65 17.65 46.24 3.67
2543 11988 0.596082 CACCAAGTAGGGCGTTTTGG 59.404 55.000 16.67 16.67 44.38 3.28
2544 11989 1.600023 TCACCAAGTAGGGCGTTTTG 58.400 50.000 0.00 0.00 43.89 2.44
2545 11990 2.579410 ATCACCAAGTAGGGCGTTTT 57.421 45.000 0.00 0.00 43.89 2.43
2546 11991 3.926058 ATATCACCAAGTAGGGCGTTT 57.074 42.857 0.00 0.00 43.89 3.60
2547 11992 5.362105 TTTATATCACCAAGTAGGGCGTT 57.638 39.130 0.00 0.00 43.89 4.84
2548 11993 5.307196 AGATTTATATCACCAAGTAGGGCGT 59.693 40.000 0.00 0.00 43.89 5.68
2549 11994 5.794894 AGATTTATATCACCAAGTAGGGCG 58.205 41.667 0.00 0.00 43.89 6.13
2550 11995 6.998673 ACAAGATTTATATCACCAAGTAGGGC 59.001 38.462 0.00 0.00 43.89 5.19
2565 12010 9.838339 AGCTAGCAACACTTATACAAGATTTAT 57.162 29.630 18.83 0.00 35.60 1.40
2566 12011 9.098355 CAGCTAGCAACACTTATACAAGATTTA 57.902 33.333 18.83 0.00 35.60 1.40
2567 12012 7.066284 CCAGCTAGCAACACTTATACAAGATTT 59.934 37.037 18.83 0.00 35.60 2.17
2568 12013 6.540189 CCAGCTAGCAACACTTATACAAGATT 59.460 38.462 18.83 0.00 35.60 2.40
2569 12014 6.051717 CCAGCTAGCAACACTTATACAAGAT 58.948 40.000 18.83 0.00 35.60 2.40
2570 12015 5.419542 CCAGCTAGCAACACTTATACAAGA 58.580 41.667 18.83 0.00 35.60 3.02
2571 12016 4.572389 CCCAGCTAGCAACACTTATACAAG 59.428 45.833 18.83 0.00 37.81 3.16
2572 12017 4.513442 CCCAGCTAGCAACACTTATACAA 58.487 43.478 18.83 0.00 0.00 2.41
2573 12018 3.118408 CCCCAGCTAGCAACACTTATACA 60.118 47.826 18.83 0.00 0.00 2.29
2574 12019 3.118371 ACCCCAGCTAGCAACACTTATAC 60.118 47.826 18.83 0.00 0.00 1.47
2575 12020 3.112263 ACCCCAGCTAGCAACACTTATA 58.888 45.455 18.83 0.00 0.00 0.98
2576 12021 1.916181 ACCCCAGCTAGCAACACTTAT 59.084 47.619 18.83 0.00 0.00 1.73
2577 12022 1.278127 GACCCCAGCTAGCAACACTTA 59.722 52.381 18.83 0.00 0.00 2.24
2578 12023 0.036875 GACCCCAGCTAGCAACACTT 59.963 55.000 18.83 0.00 0.00 3.16
2579 12024 0.838122 AGACCCCAGCTAGCAACACT 60.838 55.000 18.83 5.49 0.00 3.55
2580 12025 0.036875 AAGACCCCAGCTAGCAACAC 59.963 55.000 18.83 3.16 0.00 3.32
2581 12026 0.771127 AAAGACCCCAGCTAGCAACA 59.229 50.000 18.83 0.00 0.00 3.33
2582 12027 1.003696 AGAAAGACCCCAGCTAGCAAC 59.996 52.381 18.83 1.35 0.00 4.17
2583 12028 1.362224 AGAAAGACCCCAGCTAGCAA 58.638 50.000 18.83 0.00 0.00 3.91
2584 12029 1.362224 AAGAAAGACCCCAGCTAGCA 58.638 50.000 18.83 0.00 0.00 3.49
2585 12030 2.087646 CAAAGAAAGACCCCAGCTAGC 58.912 52.381 6.62 6.62 0.00 3.42
2586 12031 2.087646 GCAAAGAAAGACCCCAGCTAG 58.912 52.381 0.00 0.00 0.00 3.42
2587 12032 1.705186 AGCAAAGAAAGACCCCAGCTA 59.295 47.619 0.00 0.00 0.00 3.32
2588 12033 0.480252 AGCAAAGAAAGACCCCAGCT 59.520 50.000 0.00 0.00 0.00 4.24
2589 12034 0.600057 CAGCAAAGAAAGACCCCAGC 59.400 55.000 0.00 0.00 0.00 4.85
2590 12035 0.600057 GCAGCAAAGAAAGACCCCAG 59.400 55.000 0.00 0.00 0.00 4.45
2591 12036 0.185901 AGCAGCAAAGAAAGACCCCA 59.814 50.000 0.00 0.00 0.00 4.96
2592 12037 0.600057 CAGCAGCAAAGAAAGACCCC 59.400 55.000 0.00 0.00 0.00 4.95
2593 12038 0.038801 GCAGCAGCAAAGAAAGACCC 60.039 55.000 0.00 0.00 41.58 4.46
2594 12039 0.957362 AGCAGCAGCAAAGAAAGACC 59.043 50.000 3.17 0.00 45.49 3.85
2595 12040 2.292845 AGAAGCAGCAGCAAAGAAAGAC 59.707 45.455 3.17 0.00 45.49 3.01
2596 12041 2.292569 CAGAAGCAGCAGCAAAGAAAGA 59.707 45.455 3.17 0.00 45.49 2.52
2597 12042 2.034305 ACAGAAGCAGCAGCAAAGAAAG 59.966 45.455 3.17 0.00 45.49 2.62
2598 12043 2.026641 ACAGAAGCAGCAGCAAAGAAA 58.973 42.857 3.17 0.00 45.49 2.52
2599 12044 1.335810 CACAGAAGCAGCAGCAAAGAA 59.664 47.619 3.17 0.00 45.49 2.52
2600 12045 0.949397 CACAGAAGCAGCAGCAAAGA 59.051 50.000 3.17 0.00 45.49 2.52
2601 12046 0.949397 TCACAGAAGCAGCAGCAAAG 59.051 50.000 3.17 0.00 45.49 2.77
2602 12047 0.664761 GTCACAGAAGCAGCAGCAAA 59.335 50.000 3.17 0.00 45.49 3.68
2603 12048 1.168407 GGTCACAGAAGCAGCAGCAA 61.168 55.000 3.17 0.00 45.49 3.91
2604 12049 1.598962 GGTCACAGAAGCAGCAGCA 60.599 57.895 3.17 0.00 45.49 4.41
2605 12050 2.331132 GGGTCACAGAAGCAGCAGC 61.331 63.158 0.00 0.00 42.56 5.25
2606 12051 2.031516 CGGGTCACAGAAGCAGCAG 61.032 63.158 0.00 0.00 0.00 4.24
2607 12052 2.031012 CGGGTCACAGAAGCAGCA 59.969 61.111 0.00 0.00 0.00 4.41
2608 12053 0.674895 ATTCGGGTCACAGAAGCAGC 60.675 55.000 0.00 0.00 0.00 5.25
2609 12054 1.466167 CAATTCGGGTCACAGAAGCAG 59.534 52.381 0.00 0.00 0.00 4.24
2610 12055 1.202758 ACAATTCGGGTCACAGAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
2611 12056 1.464997 GACAATTCGGGTCACAGAAGC 59.535 52.381 0.00 0.00 35.36 3.86
2612 12057 2.766313 TGACAATTCGGGTCACAGAAG 58.234 47.619 0.00 0.00 40.16 2.85
2613 12058 2.920724 TGACAATTCGGGTCACAGAA 57.079 45.000 0.00 0.00 40.16 3.02
2614 12059 3.513912 ACTATGACAATTCGGGTCACAGA 59.486 43.478 9.07 0.00 46.99 3.41
2615 12060 3.618594 CACTATGACAATTCGGGTCACAG 59.381 47.826 2.14 2.14 46.99 3.66
2616 12061 3.595173 CACTATGACAATTCGGGTCACA 58.405 45.455 0.00 0.00 46.99 3.58
2617 12062 2.936498 CCACTATGACAATTCGGGTCAC 59.064 50.000 0.00 0.00 46.99 3.67
2619 12064 3.536956 TCCACTATGACAATTCGGGTC 57.463 47.619 0.00 0.00 35.83 4.46
2620 12065 3.606687 GTTCCACTATGACAATTCGGGT 58.393 45.455 0.00 0.00 0.00 5.28
2621 12066 2.943033 GGTTCCACTATGACAATTCGGG 59.057 50.000 0.00 0.00 0.00 5.14
2622 12067 3.873910 AGGTTCCACTATGACAATTCGG 58.126 45.455 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.