Multiple sequence alignment - TraesCS7A01G080200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G080200 chr7A 100.000 3959 0 0 1 3959 46062569 46058611 0.000000e+00 7312.0
1 TraesCS7A01G080200 chr7A 94.410 2755 122 19 542 3283 44821856 44824591 0.000000e+00 4205.0
2 TraesCS7A01G080200 chr7A 94.499 2636 134 9 553 3183 46100609 46097980 0.000000e+00 4054.0
3 TraesCS7A01G080200 chr7A 91.567 2585 167 24 608 3180 44448267 44445722 0.000000e+00 3518.0
4 TraesCS7A01G080200 chr7A 87.888 2675 230 41 542 3180 45982466 45979850 0.000000e+00 3059.0
5 TraesCS7A01G080200 chr7A 85.951 2598 287 43 622 3175 45857676 45855113 0.000000e+00 2704.0
6 TraesCS7A01G080200 chr7A 96.929 521 15 1 3439 3959 44824849 44825368 0.000000e+00 872.0
7 TraesCS7A01G080200 chr7A 96.614 502 12 2 3462 3959 46097566 46097066 0.000000e+00 828.0
8 TraesCS7A01G080200 chr7A 94.477 344 8 4 208 542 729462802 729462461 1.630000e-143 520.0
9 TraesCS7A01G080200 chr7A 85.563 284 12 16 3180 3463 46097858 46097604 1.810000e-68 270.0
10 TraesCS7A01G080200 chr4A 88.587 2690 244 27 542 3180 654059740 654057063 0.000000e+00 3208.0
11 TraesCS7A01G080200 chr4A 91.670 2293 175 12 552 2830 652815050 652817340 0.000000e+00 3162.0
12 TraesCS7A01G080200 chr4A 86.330 2575 281 40 629 3175 653074415 653076946 0.000000e+00 2739.0
13 TraesCS7A01G080200 chr4A 89.074 1739 141 18 1464 3164 653410942 653412669 0.000000e+00 2113.0
14 TraesCS7A01G080200 chr4A 89.274 895 79 12 552 1429 653410050 653410944 0.000000e+00 1105.0
15 TraesCS7A01G080200 chr4A 78.704 324 53 13 618 933 578387582 578387267 6.710000e-48 202.0
16 TraesCS7A01G080200 chr7D 87.186 2505 267 30 622 3101 43634554 43632079 0.000000e+00 2798.0
17 TraesCS7A01G080200 chr7D 91.767 1494 115 5 1455 2945 43637647 43636159 0.000000e+00 2071.0
18 TraesCS7A01G080200 chr7D 91.039 491 40 4 980 1466 43638412 43637922 0.000000e+00 660.0
19 TraesCS7A01G080200 chr7D 91.184 397 29 4 591 981 43660586 43660190 5.820000e-148 534.0
20 TraesCS7A01G080200 chr7D 90.428 397 32 4 591 981 43681945 43681549 5.860000e-143 518.0
21 TraesCS7A01G080200 chr4B 75.407 2151 387 90 608 2666 36131689 36133789 0.000000e+00 911.0
22 TraesCS7A01G080200 chr4B 75.325 2152 386 88 608 2666 36001439 36003538 0.000000e+00 898.0
23 TraesCS7A01G080200 chr4B 94.477 344 8 4 208 542 94151360 94151701 1.630000e-143 520.0
24 TraesCS7A01G080200 chr4B 94.444 342 8 3 208 542 1103772 1103435 2.110000e-142 516.0
25 TraesCS7A01G080200 chr4B 93.235 340 14 4 211 543 615150503 615150166 3.550000e-135 492.0
26 TraesCS7A01G080200 chr4B 99.517 207 1 0 1 207 1103893 1103687 1.040000e-100 377.0
27 TraesCS7A01G080200 chr4B 91.803 61 5 0 814 874 41846667 41846607 7.050000e-13 86.1
28 TraesCS7A01G080200 chr6A 96.784 342 2 2 208 542 119756688 119757027 2.670000e-156 562.0
29 TraesCS7A01G080200 chr6A 99.517 207 1 0 1 207 119756567 119756773 1.040000e-100 377.0
30 TraesCS7A01G080200 chr6A 99.034 207 2 0 1 207 617992305 617992099 4.830000e-99 372.0
31 TraesCS7A01G080200 chr6B 96.199 342 6 1 208 542 63236581 63236240 1.610000e-153 553.0
32 TraesCS7A01G080200 chr6B 98.551 207 3 0 1 207 63206186 63205980 2.250000e-97 366.0
33 TraesCS7A01G080200 chr6B 98.551 207 3 0 1 207 63236702 63236496 2.250000e-97 366.0
34 TraesCS7A01G080200 chr6B 93.750 64 4 0 808 871 625827723 625827786 3.260000e-16 97.1
35 TraesCS7A01G080200 chr6B 91.803 61 4 1 814 874 625849195 625849254 2.540000e-12 84.2
36 TraesCS7A01G080200 chr5B 94.721 341 8 3 208 542 448805817 448806153 4.530000e-144 521.0
37 TraesCS7A01G080200 chr5B 100.000 207 0 0 1 207 317067419 317067213 2.230000e-102 383.0
38 TraesCS7A01G080200 chr5B 86.667 75 9 1 801 875 9541302 9541375 9.120000e-12 82.4
39 TraesCS7A01G080200 chr5B 86.364 66 9 0 806 871 9616686 9616751 5.490000e-09 73.1
40 TraesCS7A01G080200 chr3B 93.043 345 12 5 208 543 757769179 757768838 9.880000e-136 494.0
41 TraesCS7A01G080200 chr3B 99.517 207 1 0 1 207 825203 824997 1.040000e-100 377.0
42 TraesCS7A01G080200 chr2B 92.982 342 10 4 208 542 200076455 200076789 1.650000e-133 486.0
43 TraesCS7A01G080200 chr1A 90.504 337 17 5 208 543 291241460 291241782 7.860000e-117 431.0
44 TraesCS7A01G080200 chr1A 99.517 207 1 0 1 207 198865570 198865776 1.040000e-100 377.0
45 TraesCS7A01G080200 chr1B 98.551 207 3 0 1 207 17821514 17821308 2.250000e-97 366.0
46 TraesCS7A01G080200 chr4D 85.263 190 26 2 707 895 24338167 24337979 1.120000e-45 195.0
47 TraesCS7A01G080200 chr4D 75.641 234 36 15 649 870 5643049 5643273 3.260000e-16 97.1
48 TraesCS7A01G080200 chr5D 77.410 363 15 7 208 543 441031464 441031786 1.910000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G080200 chr7A 46058611 46062569 3958 True 7312.000000 7312 100.000000 1 3959 1 chr7A.!!$R4 3958
1 TraesCS7A01G080200 chr7A 44445722 44448267 2545 True 3518.000000 3518 91.567000 608 3180 1 chr7A.!!$R1 2572
2 TraesCS7A01G080200 chr7A 45979850 45982466 2616 True 3059.000000 3059 87.888000 542 3180 1 chr7A.!!$R3 2638
3 TraesCS7A01G080200 chr7A 45855113 45857676 2563 True 2704.000000 2704 85.951000 622 3175 1 chr7A.!!$R2 2553
4 TraesCS7A01G080200 chr7A 44821856 44825368 3512 False 2538.500000 4205 95.669500 542 3959 2 chr7A.!!$F1 3417
5 TraesCS7A01G080200 chr7A 46097066 46100609 3543 True 1717.333333 4054 92.225333 553 3959 3 chr7A.!!$R6 3406
6 TraesCS7A01G080200 chr4A 654057063 654059740 2677 True 3208.000000 3208 88.587000 542 3180 1 chr4A.!!$R2 2638
7 TraesCS7A01G080200 chr4A 652815050 652817340 2290 False 3162.000000 3162 91.670000 552 2830 1 chr4A.!!$F1 2278
8 TraesCS7A01G080200 chr4A 653074415 653076946 2531 False 2739.000000 2739 86.330000 629 3175 1 chr4A.!!$F2 2546
9 TraesCS7A01G080200 chr4A 653410050 653412669 2619 False 1609.000000 2113 89.174000 552 3164 2 chr4A.!!$F3 2612
10 TraesCS7A01G080200 chr7D 43632079 43638412 6333 True 1843.000000 2798 89.997333 622 3101 3 chr7D.!!$R3 2479
11 TraesCS7A01G080200 chr4B 36131689 36133789 2100 False 911.000000 911 75.407000 608 2666 1 chr4B.!!$F2 2058
12 TraesCS7A01G080200 chr4B 36001439 36003538 2099 False 898.000000 898 75.325000 608 2666 1 chr4B.!!$F1 2058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.041982 GGAAGAGGGAGGGAGAGTGT 59.958 60.0 0.00 0.0 0.00 3.55 F
437 438 0.252012 AGAGGGAGGGAGAGTGTGTG 60.252 60.0 0.00 0.0 0.00 3.82 F
540 541 0.460284 ACGCACGGGCATTCTTCTAG 60.460 55.0 11.77 0.0 41.24 2.43 F
1582 4896 0.179081 GAAGACGACCCCATGTAGCC 60.179 60.0 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 4788 2.343426 ACTGCAGCGACGAGATGGA 61.343 57.895 15.27 0.00 36.61 3.41 R
1582 4896 2.514013 GGTAATCGCAGGCGTCACG 61.514 63.158 13.83 0.00 40.74 4.35 R
2520 5900 1.538419 GGTAGCACATCTTACCCGAGC 60.538 57.143 0.00 0.00 0.00 5.03 R
3103 6515 0.322322 AGGCAACCAAACATGCATGG 59.678 50.000 29.41 16.71 44.32 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.876936 ATCAGAATGTCTTTTCTATGCATGT 57.123 32.000 10.16 0.00 34.21 3.21
27 28 7.080353 TCAGAATGTCTTTTCTATGCATGTG 57.920 36.000 10.16 2.07 34.21 3.21
28 29 6.880529 TCAGAATGTCTTTTCTATGCATGTGA 59.119 34.615 10.16 4.73 34.21 3.58
29 30 7.555195 TCAGAATGTCTTTTCTATGCATGTGAT 59.445 33.333 10.16 0.00 34.21 3.06
30 31 8.188799 CAGAATGTCTTTTCTATGCATGTGATT 58.811 33.333 10.16 0.00 34.21 2.57
32 33 8.922058 AATGTCTTTTCTATGCATGTGATTTC 57.078 30.769 10.16 0.00 0.00 2.17
33 34 7.692460 TGTCTTTTCTATGCATGTGATTTCT 57.308 32.000 10.16 0.00 0.00 2.52
34 35 7.755591 TGTCTTTTCTATGCATGTGATTTCTC 58.244 34.615 10.16 0.89 0.00 2.87
35 36 7.391275 TGTCTTTTCTATGCATGTGATTTCTCA 59.609 33.333 10.16 3.16 0.00 3.27
63 64 9.832445 ATCTGGTTATAATATTTGTGAAGACGT 57.168 29.630 0.00 0.00 0.00 4.34
64 65 9.093970 TCTGGTTATAATATTTGTGAAGACGTG 57.906 33.333 0.00 0.00 0.00 4.49
65 66 7.690228 TGGTTATAATATTTGTGAAGACGTGC 58.310 34.615 0.00 0.00 0.00 5.34
66 67 7.334671 TGGTTATAATATTTGTGAAGACGTGCA 59.665 33.333 0.00 0.00 0.00 4.57
68 69 9.716507 GTTATAATATTTGTGAAGACGTGCATT 57.283 29.630 0.00 0.00 0.00 3.56
69 70 9.715123 TTATAATATTTGTGAAGACGTGCATTG 57.285 29.630 0.00 0.00 0.00 2.82
71 72 1.020437 TTGTGAAGACGTGCATTGCA 58.980 45.000 7.38 7.38 35.60 4.08
87 88 2.249309 CACGTGCACTTGGAAGCG 59.751 61.111 16.19 0.90 0.00 4.68
88 89 2.972505 ACGTGCACTTGGAAGCGG 60.973 61.111 16.19 0.00 0.00 5.52
89 90 3.726517 CGTGCACTTGGAAGCGGG 61.727 66.667 16.19 0.00 0.00 6.13
90 91 4.043200 GTGCACTTGGAAGCGGGC 62.043 66.667 10.32 0.00 0.00 6.13
145 146 4.203076 GCCACCTCGTCCGCGTAT 62.203 66.667 4.92 0.00 39.49 3.06
146 147 2.493030 CCACCTCGTCCGCGTATT 59.507 61.111 4.92 0.00 39.49 1.89
147 148 1.588139 CCACCTCGTCCGCGTATTC 60.588 63.158 4.92 0.00 39.49 1.75
148 149 1.432251 CACCTCGTCCGCGTATTCT 59.568 57.895 4.92 0.00 39.49 2.40
153 154 0.099968 TCGTCCGCGTATTCTTGGAG 59.900 55.000 4.92 0.00 39.49 3.86
155 156 0.179108 GTCCGCGTATTCTTGGAGCT 60.179 55.000 4.92 0.00 0.00 4.09
157 158 1.066430 TCCGCGTATTCTTGGAGCTTT 60.066 47.619 4.92 0.00 0.00 3.51
158 159 1.062587 CCGCGTATTCTTGGAGCTTTG 59.937 52.381 4.92 0.00 0.00 2.77
159 160 1.062587 CGCGTATTCTTGGAGCTTTGG 59.937 52.381 0.00 0.00 0.00 3.28
160 161 1.202188 GCGTATTCTTGGAGCTTTGGC 60.202 52.381 0.00 0.00 39.06 4.52
174 175 2.094545 GCTTTGGCTGGTCGATTTTCAT 60.095 45.455 0.00 0.00 35.22 2.57
176 177 2.488204 TGGCTGGTCGATTTTCATGA 57.512 45.000 0.00 0.00 0.00 3.07
177 178 2.789213 TGGCTGGTCGATTTTCATGAA 58.211 42.857 3.38 3.38 0.00 2.57
178 179 3.153130 TGGCTGGTCGATTTTCATGAAA 58.847 40.909 16.91 16.91 0.00 2.69
179 180 3.763360 TGGCTGGTCGATTTTCATGAAAT 59.237 39.130 21.10 11.46 40.61 2.17
180 181 4.220382 TGGCTGGTCGATTTTCATGAAATT 59.780 37.500 21.10 17.26 38.06 1.82
181 182 5.417266 TGGCTGGTCGATTTTCATGAAATTA 59.583 36.000 21.10 8.32 38.06 1.40
182 183 6.071672 TGGCTGGTCGATTTTCATGAAATTAA 60.072 34.615 21.10 7.58 38.06 1.40
184 185 7.492344 GGCTGGTCGATTTTCATGAAATTAATT 59.508 33.333 21.10 5.01 38.06 1.40
185 186 8.534778 GCTGGTCGATTTTCATGAAATTAATTC 58.465 33.333 21.10 11.89 38.06 2.17
186 187 8.925161 TGGTCGATTTTCATGAAATTAATTCC 57.075 30.769 21.10 17.59 38.06 3.01
187 188 7.978975 TGGTCGATTTTCATGAAATTAATTCCC 59.021 33.333 21.10 14.63 38.06 3.97
188 189 8.197439 GGTCGATTTTCATGAAATTAATTCCCT 58.803 33.333 21.10 0.00 38.06 4.20
189 190 9.237846 GTCGATTTTCATGAAATTAATTCCCTC 57.762 33.333 21.10 6.85 38.06 4.30
190 191 8.965819 TCGATTTTCATGAAATTAATTCCCTCA 58.034 29.630 21.10 2.43 38.06 3.86
191 192 9.241317 CGATTTTCATGAAATTAATTCCCTCAG 57.759 33.333 21.10 0.00 38.06 3.35
195 196 8.884124 TTCATGAAATTAATTCCCTCAGTTCT 57.116 30.769 5.45 0.00 37.22 3.01
196 197 8.284945 TCATGAAATTAATTCCCTCAGTTCTG 57.715 34.615 0.10 0.00 37.22 3.02
197 198 7.340232 TCATGAAATTAATTCCCTCAGTTCTGG 59.660 37.037 0.10 0.00 37.22 3.86
198 199 6.552008 TGAAATTAATTCCCTCAGTTCTGGT 58.448 36.000 0.10 0.00 37.22 4.00
199 200 6.434028 TGAAATTAATTCCCTCAGTTCTGGTG 59.566 38.462 0.10 0.00 37.22 4.17
200 201 2.887151 AATTCCCTCAGTTCTGGTGG 57.113 50.000 0.00 3.54 0.00 4.61
201 202 0.329596 ATTCCCTCAGTTCTGGTGGC 59.670 55.000 0.00 0.00 0.00 5.01
202 203 1.059584 TTCCCTCAGTTCTGGTGGCA 61.060 55.000 0.00 0.00 0.00 4.92
203 204 1.059584 TCCCTCAGTTCTGGTGGCAA 61.060 55.000 0.00 0.00 0.00 4.52
204 205 0.178992 CCCTCAGTTCTGGTGGCAAA 60.179 55.000 0.00 0.00 0.00 3.68
205 206 1.548582 CCCTCAGTTCTGGTGGCAAAT 60.549 52.381 0.00 0.00 0.00 2.32
206 207 2.290896 CCCTCAGTTCTGGTGGCAAATA 60.291 50.000 0.00 0.00 0.00 1.40
207 208 3.012518 CCTCAGTTCTGGTGGCAAATAG 58.987 50.000 0.00 0.00 0.00 1.73
208 209 3.307691 CCTCAGTTCTGGTGGCAAATAGA 60.308 47.826 0.00 0.00 0.00 1.98
209 210 3.674997 TCAGTTCTGGTGGCAAATAGAC 58.325 45.455 0.00 0.00 0.00 2.59
212 213 0.251916 TCTGGTGGCAAATAGACCCG 59.748 55.000 0.00 0.00 0.00 5.28
213 214 0.251916 CTGGTGGCAAATAGACCCGA 59.748 55.000 0.00 0.00 0.00 5.14
214 215 0.251916 TGGTGGCAAATAGACCCGAG 59.748 55.000 0.00 0.00 0.00 4.63
217 218 1.223487 GGCAAATAGACCCGAGCCA 59.777 57.895 0.00 0.00 41.63 4.75
219 220 1.095807 GCAAATAGACCCGAGCCACC 61.096 60.000 0.00 0.00 0.00 4.61
220 221 0.541863 CAAATAGACCCGAGCCACCT 59.458 55.000 0.00 0.00 0.00 4.00
221 222 0.831307 AAATAGACCCGAGCCACCTC 59.169 55.000 0.00 0.00 34.66 3.85
232 233 2.493030 CCACCTCGTCCGCGTATT 59.507 61.111 4.92 0.00 39.49 1.89
233 234 1.588139 CCACCTCGTCCGCGTATTC 60.588 63.158 4.92 0.00 39.49 1.75
234 235 1.432251 CACCTCGTCCGCGTATTCT 59.568 57.895 4.92 0.00 39.49 2.40
235 236 0.179145 CACCTCGTCCGCGTATTCTT 60.179 55.000 4.92 0.00 39.49 2.52
236 237 0.179145 ACCTCGTCCGCGTATTCTTG 60.179 55.000 4.92 0.00 39.49 3.02
237 238 0.870307 CCTCGTCCGCGTATTCTTGG 60.870 60.000 4.92 0.00 39.49 3.61
239 240 0.099968 TCGTCCGCGTATTCTTGGAG 59.900 55.000 4.92 0.00 39.49 3.86
240 241 1.480219 CGTCCGCGTATTCTTGGAGC 61.480 60.000 4.92 0.00 0.00 4.70
242 243 0.535335 TCCGCGTATTCTTGGAGCTT 59.465 50.000 4.92 0.00 0.00 3.74
243 244 1.066430 TCCGCGTATTCTTGGAGCTTT 60.066 47.619 4.92 0.00 0.00 3.51
244 245 1.062587 CCGCGTATTCTTGGAGCTTTG 59.937 52.381 4.92 0.00 0.00 2.77
245 246 1.062587 CGCGTATTCTTGGAGCTTTGG 59.937 52.381 0.00 0.00 0.00 3.28
258 259 1.982612 GCTTTGGCTGGTCGATTTTC 58.017 50.000 0.00 0.00 35.22 2.29
259 260 1.269448 GCTTTGGCTGGTCGATTTTCA 59.731 47.619 0.00 0.00 35.22 2.69
260 261 2.094545 GCTTTGGCTGGTCGATTTTCAT 60.095 45.455 0.00 0.00 35.22 2.57
261 262 3.504863 CTTTGGCTGGTCGATTTTCATG 58.495 45.455 0.00 0.00 0.00 3.07
262 263 2.488204 TGGCTGGTCGATTTTCATGA 57.512 45.000 0.00 0.00 0.00 3.07
264 265 3.153130 TGGCTGGTCGATTTTCATGAAA 58.847 40.909 16.91 16.91 0.00 2.69
267 268 5.417266 TGGCTGGTCGATTTTCATGAAATTA 59.583 36.000 21.10 8.32 38.06 1.40
269 270 6.980397 GGCTGGTCGATTTTCATGAAATTAAT 59.020 34.615 21.10 12.10 38.06 1.40
270 271 7.492344 GGCTGGTCGATTTTCATGAAATTAATT 59.508 33.333 21.10 5.01 38.06 1.40
272 273 8.925161 TGGTCGATTTTCATGAAATTAATTCC 57.075 30.769 21.10 17.59 38.06 3.01
273 274 7.978975 TGGTCGATTTTCATGAAATTAATTCCC 59.021 33.333 21.10 14.63 38.06 3.97
274 275 8.197439 GGTCGATTTTCATGAAATTAATTCCCT 58.803 33.333 21.10 0.00 38.06 4.20
275 276 9.023967 GTCGATTTTCATGAAATTAATTCCCTG 57.976 33.333 21.10 0.00 38.06 4.45
276 277 8.196771 TCGATTTTCATGAAATTAATTCCCTGG 58.803 33.333 21.10 2.28 38.06 4.45
277 278 7.981225 CGATTTTCATGAAATTAATTCCCTGGT 59.019 33.333 21.10 0.00 38.06 4.00
278 279 9.101655 GATTTTCATGAAATTAATTCCCTGGTG 57.898 33.333 21.10 0.00 38.06 4.17
280 281 4.405358 TCATGAAATTAATTCCCTGGTGGC 59.595 41.667 0.10 0.00 37.22 5.01
282 283 4.163427 TGAAATTAATTCCCTGGTGGCAA 58.837 39.130 0.10 0.00 37.22 4.52
283 284 4.594920 TGAAATTAATTCCCTGGTGGCAAA 59.405 37.500 0.10 0.00 37.22 3.68
284 285 5.250313 TGAAATTAATTCCCTGGTGGCAAAT 59.750 36.000 0.10 0.00 37.22 2.32
286 287 7.127032 TGAAATTAATTCCCTGGTGGCAAATAT 59.873 33.333 0.10 0.00 37.22 1.28
287 288 8.560124 AAATTAATTCCCTGGTGGCAAATATA 57.440 30.769 0.10 0.00 0.00 0.86
288 289 8.560124 AATTAATTCCCTGGTGGCAAATATAA 57.440 30.769 0.00 0.00 0.00 0.98
290 291 9.836179 ATTAATTCCCTGGTGGCAAATATAATA 57.164 29.630 0.00 0.00 0.00 0.98
291 292 7.539034 AATTCCCTGGTGGCAAATATAATAC 57.461 36.000 0.00 0.00 0.00 1.89
292 293 5.654901 TCCCTGGTGGCAAATATAATACA 57.345 39.130 0.00 0.00 0.00 2.29
295 296 5.774690 CCCTGGTGGCAAATATAATACACAT 59.225 40.000 0.00 0.00 0.00 3.21
296 297 6.945435 CCCTGGTGGCAAATATAATACACATA 59.055 38.462 0.00 0.00 0.00 2.29
298 299 9.023962 CCTGGTGGCAAATATAATACACATAAT 57.976 33.333 0.00 0.00 0.00 1.28
300 301 9.019656 TGGTGGCAAATATAATACACATAATCC 57.980 33.333 0.00 0.00 0.00 3.01
301 302 9.019656 GGTGGCAAATATAATACACATAATCCA 57.980 33.333 0.00 0.00 0.00 3.41
322 323 8.696043 ATCCATATTGTTATGCATTAGTGTGT 57.304 30.769 3.54 0.00 34.94 3.72
328 329 7.680442 TTGTTATGCATTAGTGTGTATGTGT 57.320 32.000 3.54 0.00 0.00 3.72
331 332 7.389053 TGTTATGCATTAGTGTGTATGTGTGAA 59.611 33.333 3.54 0.00 0.00 3.18
332 333 6.816134 ATGCATTAGTGTGTATGTGTGAAA 57.184 33.333 0.00 0.00 0.00 2.69
333 334 6.816134 TGCATTAGTGTGTATGTGTGAAAT 57.184 33.333 0.00 0.00 0.00 2.17
335 336 7.973601 TGCATTAGTGTGTATGTGTGAAATAG 58.026 34.615 0.00 0.00 0.00 1.73
336 337 7.821846 TGCATTAGTGTGTATGTGTGAAATAGA 59.178 33.333 0.00 0.00 0.00 1.98
337 338 8.830580 GCATTAGTGTGTATGTGTGAAATAGAT 58.169 33.333 0.00 0.00 0.00 1.98
339 340 8.716646 TTAGTGTGTATGTGTGAAATAGATGG 57.283 34.615 0.00 0.00 0.00 3.51
340 341 6.946340 AGTGTGTATGTGTGAAATAGATGGA 58.054 36.000 0.00 0.00 0.00 3.41
341 342 7.568349 AGTGTGTATGTGTGAAATAGATGGAT 58.432 34.615 0.00 0.00 0.00 3.41
342 343 8.049117 AGTGTGTATGTGTGAAATAGATGGATT 58.951 33.333 0.00 0.00 0.00 3.01
346 347 9.506018 TGTATGTGTGAAATAGATGGATTATGG 57.494 33.333 0.00 0.00 0.00 2.74
348 349 8.627208 ATGTGTGAAATAGATGGATTATGGTC 57.373 34.615 0.00 0.00 0.00 4.02
350 351 6.431234 GTGTGAAATAGATGGATTATGGTCCC 59.569 42.308 0.00 0.00 37.48 4.46
351 352 5.643777 GTGAAATAGATGGATTATGGTCCCG 59.356 44.000 0.00 0.00 37.48 5.14
352 353 5.309543 TGAAATAGATGGATTATGGTCCCGT 59.690 40.000 0.00 0.00 37.48 5.28
353 354 6.499000 TGAAATAGATGGATTATGGTCCCGTA 59.501 38.462 0.00 0.00 37.48 4.02
354 355 5.934402 ATAGATGGATTATGGTCCCGTAC 57.066 43.478 0.00 0.00 37.48 3.67
365 366 3.121738 GGTCCCGTACCCAATAAGATG 57.878 52.381 0.00 0.00 43.16 2.90
367 368 2.701951 GTCCCGTACCCAATAAGATGGA 59.298 50.000 0.00 0.00 43.54 3.41
368 369 3.326880 GTCCCGTACCCAATAAGATGGAT 59.673 47.826 0.00 0.00 43.54 3.41
369 370 4.529377 GTCCCGTACCCAATAAGATGGATA 59.471 45.833 0.00 0.00 43.54 2.59
373 374 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
375 376 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
376 377 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
377 378 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
378 379 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
379 380 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
380 381 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
381 382 7.412063 CAATAAGATGGATATGTGTGTGTGTG 58.588 38.462 0.00 0.00 0.00 3.82
382 383 4.558226 AGATGGATATGTGTGTGTGTGT 57.442 40.909 0.00 0.00 0.00 3.72
385 386 6.108687 AGATGGATATGTGTGTGTGTGTTAG 58.891 40.000 0.00 0.00 0.00 2.34
386 387 5.476091 TGGATATGTGTGTGTGTGTTAGA 57.524 39.130 0.00 0.00 0.00 2.10
387 388 5.478407 TGGATATGTGTGTGTGTGTTAGAG 58.522 41.667 0.00 0.00 0.00 2.43
388 389 5.245075 TGGATATGTGTGTGTGTGTTAGAGA 59.755 40.000 0.00 0.00 0.00 3.10
389 390 5.807520 GGATATGTGTGTGTGTGTTAGAGAG 59.192 44.000 0.00 0.00 0.00 3.20
390 391 4.937201 ATGTGTGTGTGTGTTAGAGAGA 57.063 40.909 0.00 0.00 0.00 3.10
391 392 4.307443 TGTGTGTGTGTGTTAGAGAGAG 57.693 45.455 0.00 0.00 0.00 3.20
392 393 3.951680 TGTGTGTGTGTGTTAGAGAGAGA 59.048 43.478 0.00 0.00 0.00 3.10
393 394 4.036852 TGTGTGTGTGTGTTAGAGAGAGAG 59.963 45.833 0.00 0.00 0.00 3.20
394 395 3.570125 TGTGTGTGTGTTAGAGAGAGAGG 59.430 47.826 0.00 0.00 0.00 3.69
397 398 3.442273 GTGTGTGTTAGAGAGAGAGGGAG 59.558 52.174 0.00 0.00 0.00 4.30
399 400 3.945285 GTGTGTTAGAGAGAGAGGGAGAG 59.055 52.174 0.00 0.00 0.00 3.20
403 404 0.998945 AGAGAGAGAGGGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
404 405 0.996762 GAGAGAGAGGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
405 406 0.330431 AGAGAGAGGGAGAGGGGGAT 60.330 60.000 0.00 0.00 0.00 3.85
407 408 1.357761 GAGAGAGGGAGAGGGGGATAG 59.642 61.905 0.00 0.00 0.00 2.08
408 409 1.059364 AGAGAGGGAGAGGGGGATAGA 60.059 57.143 0.00 0.00 0.00 1.98
409 410 1.357761 GAGAGGGAGAGGGGGATAGAG 59.642 61.905 0.00 0.00 0.00 2.43
410 411 1.059364 AGAGGGAGAGGGGGATAGAGA 60.059 57.143 0.00 0.00 0.00 3.10
411 412 1.357761 GAGGGAGAGGGGGATAGAGAG 59.642 61.905 0.00 0.00 0.00 3.20
412 413 1.163408 GGGAGAGGGGGATAGAGAGT 58.837 60.000 0.00 0.00 0.00 3.24
413 414 1.203125 GGGAGAGGGGGATAGAGAGTG 60.203 61.905 0.00 0.00 0.00 3.51
414 415 1.783979 GGAGAGGGGGATAGAGAGTGA 59.216 57.143 0.00 0.00 0.00 3.41
416 417 1.786441 AGAGGGGGATAGAGAGTGAGG 59.214 57.143 0.00 0.00 0.00 3.86
417 418 1.783979 GAGGGGGATAGAGAGTGAGGA 59.216 57.143 0.00 0.00 0.00 3.71
418 419 2.178106 GAGGGGGATAGAGAGTGAGGAA 59.822 54.545 0.00 0.00 0.00 3.36
420 421 2.178106 GGGGGATAGAGAGTGAGGAAGA 59.822 54.545 0.00 0.00 0.00 2.87
421 422 3.496331 GGGGATAGAGAGTGAGGAAGAG 58.504 54.545 0.00 0.00 0.00 2.85
422 423 3.496331 GGGATAGAGAGTGAGGAAGAGG 58.504 54.545 0.00 0.00 0.00 3.69
425 426 2.826674 AGAGAGTGAGGAAGAGGGAG 57.173 55.000 0.00 0.00 0.00 4.30
426 427 1.287739 AGAGAGTGAGGAAGAGGGAGG 59.712 57.143 0.00 0.00 0.00 4.30
427 428 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
428 429 0.336737 GAGTGAGGAAGAGGGAGGGA 59.663 60.000 0.00 0.00 0.00 4.20
429 430 0.338120 AGTGAGGAAGAGGGAGGGAG 59.662 60.000 0.00 0.00 0.00 4.30
430 431 0.336737 GTGAGGAAGAGGGAGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
431 432 0.633921 TGAGGAAGAGGGAGGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
432 433 0.634465 GAGGAAGAGGGAGGGAGAGT 59.366 60.000 0.00 0.00 0.00 3.24
434 435 0.041982 GGAAGAGGGAGGGAGAGTGT 59.958 60.000 0.00 0.00 0.00 3.55
435 436 1.190643 GAAGAGGGAGGGAGAGTGTG 58.809 60.000 0.00 0.00 0.00 3.82
436 437 0.489567 AAGAGGGAGGGAGAGTGTGT 59.510 55.000 0.00 0.00 0.00 3.72
437 438 0.252012 AGAGGGAGGGAGAGTGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
438 439 0.543174 GAGGGAGGGAGAGTGTGTGT 60.543 60.000 0.00 0.00 0.00 3.72
439 440 0.543174 AGGGAGGGAGAGTGTGTGTC 60.543 60.000 0.00 0.00 0.00 3.67
440 441 0.543174 GGGAGGGAGAGTGTGTGTCT 60.543 60.000 0.00 0.00 0.00 3.41
441 442 1.343069 GGAGGGAGAGTGTGTGTCTT 58.657 55.000 0.00 0.00 0.00 3.01
443 444 2.548920 GGAGGGAGAGTGTGTGTCTTTG 60.549 54.545 0.00 0.00 0.00 2.77
444 445 2.103263 GAGGGAGAGTGTGTGTCTTTGT 59.897 50.000 0.00 0.00 0.00 2.83
445 446 2.158900 AGGGAGAGTGTGTGTCTTTGTG 60.159 50.000 0.00 0.00 0.00 3.33
446 447 2.420129 GGGAGAGTGTGTGTCTTTGTGT 60.420 50.000 0.00 0.00 0.00 3.72
447 448 2.609459 GGAGAGTGTGTGTCTTTGTGTG 59.391 50.000 0.00 0.00 0.00 3.82
448 449 3.262420 GAGAGTGTGTGTCTTTGTGTGT 58.738 45.455 0.00 0.00 0.00 3.72
449 450 3.002791 AGAGTGTGTGTCTTTGTGTGTG 58.997 45.455 0.00 0.00 0.00 3.82
450 451 3.000041 GAGTGTGTGTCTTTGTGTGTGA 59.000 45.455 0.00 0.00 0.00 3.58
451 452 3.002791 AGTGTGTGTCTTTGTGTGTGAG 58.997 45.455 0.00 0.00 0.00 3.51
452 453 2.095853 GTGTGTGTCTTTGTGTGTGAGG 59.904 50.000 0.00 0.00 0.00 3.86
453 454 2.027653 TGTGTGTCTTTGTGTGTGAGGA 60.028 45.455 0.00 0.00 0.00 3.71
454 455 3.206150 GTGTGTCTTTGTGTGTGAGGAT 58.794 45.455 0.00 0.00 0.00 3.24
455 456 3.627577 GTGTGTCTTTGTGTGTGAGGATT 59.372 43.478 0.00 0.00 0.00 3.01
456 457 4.096382 GTGTGTCTTTGTGTGTGAGGATTT 59.904 41.667 0.00 0.00 0.00 2.17
457 458 4.096231 TGTGTCTTTGTGTGTGAGGATTTG 59.904 41.667 0.00 0.00 0.00 2.32
458 459 4.335315 GTGTCTTTGTGTGTGAGGATTTGA 59.665 41.667 0.00 0.00 0.00 2.69
460 461 5.008911 TGTCTTTGTGTGTGAGGATTTGATG 59.991 40.000 0.00 0.00 0.00 3.07
461 462 4.520111 TCTTTGTGTGTGAGGATTTGATGG 59.480 41.667 0.00 0.00 0.00 3.51
462 463 3.507162 TGTGTGTGAGGATTTGATGGT 57.493 42.857 0.00 0.00 0.00 3.55
463 464 4.632327 TGTGTGTGAGGATTTGATGGTA 57.368 40.909 0.00 0.00 0.00 3.25
465 466 5.380900 TGTGTGTGAGGATTTGATGGTAAA 58.619 37.500 0.00 0.00 0.00 2.01
466 467 5.830457 TGTGTGTGAGGATTTGATGGTAAAA 59.170 36.000 0.00 0.00 0.00 1.52
483 484 1.314730 AAAAAGGTCGCCAATGTCGT 58.685 45.000 0.00 0.00 0.00 4.34
485 486 2.172851 AAAGGTCGCCAATGTCGTAA 57.827 45.000 0.00 0.00 0.00 3.18
486 487 2.396590 AAGGTCGCCAATGTCGTAAT 57.603 45.000 0.00 0.00 0.00 1.89
487 488 3.530265 AAGGTCGCCAATGTCGTAATA 57.470 42.857 0.00 0.00 0.00 0.98
488 489 3.746045 AGGTCGCCAATGTCGTAATAT 57.254 42.857 0.00 0.00 0.00 1.28
489 490 4.067972 AGGTCGCCAATGTCGTAATATT 57.932 40.909 0.00 0.00 0.00 1.28
490 491 3.807622 AGGTCGCCAATGTCGTAATATTG 59.192 43.478 0.00 0.00 34.68 1.90
491 492 3.805422 GGTCGCCAATGTCGTAATATTGA 59.195 43.478 0.00 0.00 36.41 2.57
493 494 5.195379 GTCGCCAATGTCGTAATATTGAAC 58.805 41.667 0.00 0.00 36.41 3.18
494 495 5.006358 GTCGCCAATGTCGTAATATTGAACT 59.994 40.000 0.00 0.00 36.41 3.01
495 496 5.233476 TCGCCAATGTCGTAATATTGAACTC 59.767 40.000 0.00 0.00 36.41 3.01
497 498 6.238103 CGCCAATGTCGTAATATTGAACTCTT 60.238 38.462 0.00 0.00 36.41 2.85
498 499 7.042992 CGCCAATGTCGTAATATTGAACTCTTA 60.043 37.037 0.00 0.00 36.41 2.10
499 500 8.609176 GCCAATGTCGTAATATTGAACTCTTAA 58.391 33.333 0.00 0.00 36.41 1.85
513 514 5.977489 AACTCTTAAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
514 515 4.341487 ACTCTTAAAGTTAATGTGGCCCC 58.659 43.478 0.00 0.00 33.03 5.80
515 516 3.349022 TCTTAAAGTTAATGTGGCCCCG 58.651 45.455 0.00 0.00 0.00 5.73
516 517 2.883122 TAAAGTTAATGTGGCCCCGT 57.117 45.000 0.00 0.00 0.00 5.28
517 518 2.003937 AAAGTTAATGTGGCCCCGTT 57.996 45.000 0.00 0.00 0.00 4.44
520 521 1.228583 TTAATGTGGCCCCGTTGCA 60.229 52.632 0.00 0.00 0.00 4.08
521 522 0.827925 TTAATGTGGCCCCGTTGCAA 60.828 50.000 0.00 0.00 0.00 4.08
522 523 1.528292 TAATGTGGCCCCGTTGCAAC 61.528 55.000 19.89 19.89 35.65 4.17
532 533 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
533 534 3.600694 TTGCAACGCACGGGCATT 61.601 55.556 11.77 0.00 38.71 3.56
534 535 3.550339 TTGCAACGCACGGGCATTC 62.550 57.895 11.77 0.00 38.71 2.67
535 536 3.737172 GCAACGCACGGGCATTCT 61.737 61.111 11.77 0.00 41.24 2.40
536 537 2.953821 CAACGCACGGGCATTCTT 59.046 55.556 11.77 0.00 41.24 2.52
538 539 1.302511 AACGCACGGGCATTCTTCT 60.303 52.632 11.77 0.00 41.24 2.85
540 541 0.460284 ACGCACGGGCATTCTTCTAG 60.460 55.000 11.77 0.00 41.24 2.43
687 3931 2.543802 CGATGACGCGCCTCCTCTA 61.544 63.158 5.73 0.00 0.00 2.43
792 4042 2.364448 GGCCTCCTCGACCTCCTT 60.364 66.667 0.00 0.00 0.00 3.36
871 4121 3.547787 AACACCCTCGCCCTCCTCT 62.548 63.158 0.00 0.00 0.00 3.69
996 4273 3.753787 CCAAAGTCTCCTGGCCTTT 57.246 52.632 3.32 0.00 0.00 3.11
1224 4513 2.101582 GACTAAGCTCATGTCATCCCGT 59.898 50.000 8.29 0.00 0.00 5.28
1279 4574 3.620821 GGTACTCTTTTCAGCAGCAGATC 59.379 47.826 0.00 0.00 0.00 2.75
1337 4632 4.158209 CCCCATATTGCGCATGATTATGAA 59.842 41.667 12.75 0.00 36.36 2.57
1483 4788 0.609131 CCTGTGCTGGGACGGAAAAT 60.609 55.000 2.66 0.00 36.31 1.82
1575 4889 4.295141 ACAATATTTGAAGACGACCCCA 57.705 40.909 0.00 0.00 0.00 4.96
1578 4892 2.879103 ATTTGAAGACGACCCCATGT 57.121 45.000 0.00 0.00 0.00 3.21
1582 4896 0.179081 GAAGACGACCCCATGTAGCC 60.179 60.000 0.00 0.00 0.00 3.93
1760 5074 6.275494 TGTCTCCAACATTATCGTCAACTA 57.725 37.500 0.00 0.00 31.20 2.24
1863 5177 1.068281 CTATCTCTGCTCCGCACACAT 59.932 52.381 0.00 0.00 33.79 3.21
2164 5496 2.033194 GGTACTGTGTTGCGCCTCC 61.033 63.158 4.18 0.00 0.00 4.30
2165 5497 2.048597 TACTGTGTTGCGCCTCCG 60.049 61.111 4.18 0.00 37.57 4.63
2197 5529 2.125673 GTATGAGGCGCGTGTGGT 60.126 61.111 7.63 0.00 0.00 4.16
2199 5531 2.938086 TATGAGGCGCGTGTGGTGT 61.938 57.895 7.63 0.00 0.00 4.16
2443 5819 3.065648 CCTACTCTCTTACTCGACTTGCC 59.934 52.174 0.00 0.00 0.00 4.52
2448 5824 1.618837 TCTTACTCGACTTGCCTGCTT 59.381 47.619 0.00 0.00 0.00 3.91
2520 5900 3.683937 CAACCAAAGCTGCCCCCG 61.684 66.667 0.00 0.00 0.00 5.73
2660 6043 4.160329 CCCTCTACCCTATGAGTATGCAA 58.840 47.826 0.00 0.00 0.00 4.08
2765 6149 6.183360 GCATGATCGGGTTTTATTTTGTTGAC 60.183 38.462 0.00 0.00 0.00 3.18
2835 6219 2.172505 AGATGACGCCAAATACATCCCA 59.827 45.455 0.00 0.00 39.61 4.37
3103 6515 6.078202 TCGAGACTGGATGATATTCTTCAC 57.922 41.667 0.00 0.00 0.00 3.18
3122 6534 0.322322 CCATGCATGTTTGGTTGCCT 59.678 50.000 24.58 0.00 38.08 4.75
3183 6733 4.782019 TGCTTGGCCTTGTTAAATACTG 57.218 40.909 3.32 0.00 0.00 2.74
3272 6822 2.190578 GAAGGCCGATGGTGAGGG 59.809 66.667 0.00 0.00 0.00 4.30
3283 6833 4.261801 CGATGGTGAGGGAGTTATGTTTT 58.738 43.478 0.00 0.00 0.00 2.43
3284 6834 4.700213 CGATGGTGAGGGAGTTATGTTTTT 59.300 41.667 0.00 0.00 0.00 1.94
3315 6865 4.436332 CCGTGGAGGTAGTTATGTTTACC 58.564 47.826 0.00 0.00 39.70 2.85
3336 6886 2.036733 CAGACGGGTTCTTGTAACTCCA 59.963 50.000 0.00 0.00 28.96 3.86
3544 7296 2.897969 AGAGAAACCGGTAGAGCAGAAA 59.102 45.455 8.00 0.00 0.00 2.52
3667 7419 5.529581 TTATGATGGTCGCTGAATCTACA 57.470 39.130 0.00 0.00 0.00 2.74
3724 7476 6.423776 AATTCATGGTGTCATTGGAAGTTT 57.576 33.333 0.00 0.00 0.00 2.66
3855 7607 2.679059 CGAATGACCTTGCTGTCCATCT 60.679 50.000 0.00 0.00 34.25 2.90
3930 7682 2.032030 CAGCACTGTTTTGGTTACCGAG 60.032 50.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.833493 CACATGCATAGAAAAGACATTCTGATA 58.167 33.333 0.00 0.00 39.87 2.15
3 4 6.880529 TCACATGCATAGAAAAGACATTCTGA 59.119 34.615 0.00 0.00 39.87 3.27
4 5 7.080353 TCACATGCATAGAAAAGACATTCTG 57.920 36.000 0.00 0.00 39.87 3.02
5 6 7.876936 ATCACATGCATAGAAAAGACATTCT 57.123 32.000 0.00 0.00 42.21 2.40
6 7 8.922058 AAATCACATGCATAGAAAAGACATTC 57.078 30.769 0.00 0.00 0.00 2.67
7 8 8.746530 AGAAATCACATGCATAGAAAAGACATT 58.253 29.630 0.00 0.00 0.00 2.71
8 9 8.289939 AGAAATCACATGCATAGAAAAGACAT 57.710 30.769 0.00 0.00 0.00 3.06
9 10 7.391275 TGAGAAATCACATGCATAGAAAAGACA 59.609 33.333 0.00 0.00 0.00 3.41
10 11 7.695618 GTGAGAAATCACATGCATAGAAAAGAC 59.304 37.037 0.00 0.00 40.16 3.01
12 13 7.532571 TGTGAGAAATCACATGCATAGAAAAG 58.467 34.615 6.97 0.00 44.63 2.27
13 14 7.451501 TGTGAGAAATCACATGCATAGAAAA 57.548 32.000 6.97 0.00 44.63 2.29
37 38 9.832445 ACGTCTTCACAAATATTATAACCAGAT 57.168 29.630 0.00 0.00 0.00 2.90
38 39 9.093970 CACGTCTTCACAAATATTATAACCAGA 57.906 33.333 0.00 0.00 0.00 3.86
39 40 7.850982 GCACGTCTTCACAAATATTATAACCAG 59.149 37.037 0.00 0.00 0.00 4.00
40 41 7.334671 TGCACGTCTTCACAAATATTATAACCA 59.665 33.333 0.00 0.00 0.00 3.67
41 42 7.690228 TGCACGTCTTCACAAATATTATAACC 58.310 34.615 0.00 0.00 0.00 2.85
42 43 9.716507 AATGCACGTCTTCACAAATATTATAAC 57.283 29.630 0.00 0.00 0.00 1.89
44 45 7.855409 GCAATGCACGTCTTCACAAATATTATA 59.145 33.333 0.00 0.00 0.00 0.98
45 46 6.692681 GCAATGCACGTCTTCACAAATATTAT 59.307 34.615 0.00 0.00 0.00 1.28
46 47 6.027131 GCAATGCACGTCTTCACAAATATTA 58.973 36.000 0.00 0.00 0.00 0.98
47 48 4.858692 GCAATGCACGTCTTCACAAATATT 59.141 37.500 0.00 0.00 0.00 1.28
48 49 4.082841 TGCAATGCACGTCTTCACAAATAT 60.083 37.500 2.72 0.00 31.71 1.28
49 50 3.251972 TGCAATGCACGTCTTCACAAATA 59.748 39.130 2.72 0.00 31.71 1.40
51 52 1.403323 TGCAATGCACGTCTTCACAAA 59.597 42.857 2.72 0.00 31.71 2.83
52 53 1.020437 TGCAATGCACGTCTTCACAA 58.980 45.000 2.72 0.00 31.71 3.33
53 54 2.700329 TGCAATGCACGTCTTCACA 58.300 47.368 2.72 0.00 31.71 3.58
69 70 2.050985 GCTTCCAAGTGCACGTGC 60.051 61.111 33.11 33.11 42.50 5.34
71 72 2.972505 CCGCTTCCAAGTGCACGT 60.973 61.111 12.01 5.01 35.25 4.49
73 74 4.043200 GCCCGCTTCCAAGTGCAC 62.043 66.667 9.40 9.40 35.25 4.57
128 129 3.711541 AATACGCGGACGAGGTGGC 62.712 63.158 12.47 0.00 43.93 5.01
130 131 0.179145 AAGAATACGCGGACGAGGTG 60.179 55.000 12.47 0.00 43.93 4.00
132 133 0.870307 CCAAGAATACGCGGACGAGG 60.870 60.000 12.47 0.00 43.93 4.63
133 134 0.099968 TCCAAGAATACGCGGACGAG 59.900 55.000 12.47 0.00 43.93 4.18
134 135 0.099968 CTCCAAGAATACGCGGACGA 59.900 55.000 12.47 0.00 43.93 4.20
137 138 0.535335 AAGCTCCAAGAATACGCGGA 59.465 50.000 12.47 0.00 0.00 5.54
138 139 1.062587 CAAAGCTCCAAGAATACGCGG 59.937 52.381 12.47 0.00 0.00 6.46
139 140 1.062587 CCAAAGCTCCAAGAATACGCG 59.937 52.381 3.53 3.53 0.00 6.01
140 141 1.202188 GCCAAAGCTCCAAGAATACGC 60.202 52.381 0.00 0.00 35.50 4.42
141 142 2.832672 GCCAAAGCTCCAAGAATACG 57.167 50.000 0.00 0.00 35.50 3.06
153 154 1.269448 TGAAAATCGACCAGCCAAAGC 59.731 47.619 0.00 0.00 40.32 3.51
155 156 3.153130 TCATGAAAATCGACCAGCCAAA 58.847 40.909 0.00 0.00 0.00 3.28
157 158 2.488204 TCATGAAAATCGACCAGCCA 57.512 45.000 0.00 0.00 0.00 4.75
158 159 3.848272 TTTCATGAAAATCGACCAGCC 57.152 42.857 18.45 0.00 0.00 4.85
159 160 7.992180 ATTAATTTCATGAAAATCGACCAGC 57.008 32.000 23.91 0.00 36.54 4.85
160 161 9.023967 GGAATTAATTTCATGAAAATCGACCAG 57.976 33.333 23.91 0.00 36.54 4.00
161 162 7.978975 GGGAATTAATTTCATGAAAATCGACCA 59.021 33.333 23.91 0.00 36.54 4.02
162 163 8.197439 AGGGAATTAATTTCATGAAAATCGACC 58.803 33.333 23.91 19.86 36.54 4.79
164 165 8.965819 TGAGGGAATTAATTTCATGAAAATCGA 58.034 29.630 23.91 11.24 36.54 3.59
168 169 9.927668 GAACTGAGGGAATTAATTTCATGAAAA 57.072 29.630 23.91 9.13 35.94 2.29
169 170 9.312904 AGAACTGAGGGAATTAATTTCATGAAA 57.687 29.630 22.52 22.52 35.94 2.69
170 171 8.742777 CAGAACTGAGGGAATTAATTTCATGAA 58.257 33.333 3.38 3.38 35.94 2.57
171 172 7.340232 CCAGAACTGAGGGAATTAATTTCATGA 59.660 37.037 8.74 0.00 35.94 3.07
174 175 6.434028 CACCAGAACTGAGGGAATTAATTTCA 59.566 38.462 8.74 5.07 35.94 2.69
176 177 5.716703 CCACCAGAACTGAGGGAATTAATTT 59.283 40.000 1.43 0.00 0.00 1.82
177 178 5.264395 CCACCAGAACTGAGGGAATTAATT 58.736 41.667 0.00 0.00 0.00 1.40
178 179 4.860022 CCACCAGAACTGAGGGAATTAAT 58.140 43.478 3.19 0.00 0.00 1.40
179 180 3.561313 GCCACCAGAACTGAGGGAATTAA 60.561 47.826 13.11 0.00 0.00 1.40
180 181 2.026262 GCCACCAGAACTGAGGGAATTA 60.026 50.000 13.11 0.00 0.00 1.40
181 182 1.272147 GCCACCAGAACTGAGGGAATT 60.272 52.381 13.11 0.00 0.00 2.17
182 183 0.329596 GCCACCAGAACTGAGGGAAT 59.670 55.000 13.11 0.00 0.00 3.01
184 185 1.059584 TTGCCACCAGAACTGAGGGA 61.060 55.000 13.11 8.80 0.00 4.20
185 186 0.178992 TTTGCCACCAGAACTGAGGG 60.179 55.000 3.19 5.55 0.00 4.30
186 187 1.915141 ATTTGCCACCAGAACTGAGG 58.085 50.000 3.19 6.21 0.00 3.86
187 188 3.686726 GTCTATTTGCCACCAGAACTGAG 59.313 47.826 3.19 0.00 0.00 3.35
188 189 3.559171 GGTCTATTTGCCACCAGAACTGA 60.559 47.826 3.19 0.00 0.00 3.41
189 190 2.749621 GGTCTATTTGCCACCAGAACTG 59.250 50.000 0.00 0.00 0.00 3.16
190 191 2.290960 GGGTCTATTTGCCACCAGAACT 60.291 50.000 0.00 0.00 31.06 3.01
191 192 2.092323 GGGTCTATTTGCCACCAGAAC 58.908 52.381 0.00 0.00 31.06 3.01
192 193 1.339631 CGGGTCTATTTGCCACCAGAA 60.340 52.381 0.00 0.00 31.06 3.02
193 194 0.251916 CGGGTCTATTTGCCACCAGA 59.748 55.000 0.00 0.00 31.06 3.86
195 196 0.251916 CTCGGGTCTATTTGCCACCA 59.748 55.000 0.00 0.00 31.06 4.17
196 197 1.095807 GCTCGGGTCTATTTGCCACC 61.096 60.000 0.00 0.00 0.00 4.61
197 198 1.095807 GGCTCGGGTCTATTTGCCAC 61.096 60.000 0.00 0.00 40.04 5.01
198 199 1.223487 GGCTCGGGTCTATTTGCCA 59.777 57.895 0.00 0.00 40.04 4.92
199 200 1.095807 GTGGCTCGGGTCTATTTGCC 61.096 60.000 0.00 0.00 40.62 4.52
200 201 1.095807 GGTGGCTCGGGTCTATTTGC 61.096 60.000 0.00 0.00 0.00 3.68
201 202 0.541863 AGGTGGCTCGGGTCTATTTG 59.458 55.000 0.00 0.00 0.00 2.32
202 203 0.831307 GAGGTGGCTCGGGTCTATTT 59.169 55.000 0.00 0.00 0.00 1.40
203 204 1.392710 CGAGGTGGCTCGGGTCTATT 61.393 60.000 0.00 0.00 42.51 1.73
204 205 1.828660 CGAGGTGGCTCGGGTCTAT 60.829 63.158 0.00 0.00 42.51 1.98
205 206 2.439701 CGAGGTGGCTCGGGTCTA 60.440 66.667 0.00 0.00 42.51 2.59
214 215 3.711541 AATACGCGGACGAGGTGGC 62.712 63.158 12.47 0.00 43.93 5.01
217 218 0.179145 CAAGAATACGCGGACGAGGT 60.179 55.000 12.47 0.00 43.93 3.85
219 220 0.099968 TCCAAGAATACGCGGACGAG 59.900 55.000 12.47 0.00 43.93 4.18
220 221 0.099968 CTCCAAGAATACGCGGACGA 59.900 55.000 12.47 0.00 43.93 4.20
222 223 0.179108 AGCTCCAAGAATACGCGGAC 60.179 55.000 12.47 0.00 0.00 4.79
223 224 0.535335 AAGCTCCAAGAATACGCGGA 59.465 50.000 12.47 0.00 0.00 5.54
224 225 1.062587 CAAAGCTCCAAGAATACGCGG 59.937 52.381 12.47 0.00 0.00 6.46
225 226 1.062587 CCAAAGCTCCAAGAATACGCG 59.937 52.381 3.53 3.53 0.00 6.01
226 227 1.202188 GCCAAAGCTCCAAGAATACGC 60.202 52.381 0.00 0.00 35.50 4.42
227 228 2.832672 GCCAAAGCTCCAAGAATACG 57.167 50.000 0.00 0.00 35.50 3.06
239 240 1.269448 TGAAAATCGACCAGCCAAAGC 59.731 47.619 0.00 0.00 40.32 3.51
240 241 3.191162 TCATGAAAATCGACCAGCCAAAG 59.809 43.478 0.00 0.00 0.00 2.77
242 243 2.789213 TCATGAAAATCGACCAGCCAA 58.211 42.857 0.00 0.00 0.00 4.52
243 244 2.488204 TCATGAAAATCGACCAGCCA 57.512 45.000 0.00 0.00 0.00 4.75
244 245 3.848272 TTTCATGAAAATCGACCAGCC 57.152 42.857 18.45 0.00 0.00 4.85
245 246 7.992180 ATTAATTTCATGAAAATCGACCAGC 57.008 32.000 23.91 0.00 36.54 4.85
247 248 7.978975 GGGAATTAATTTCATGAAAATCGACCA 59.021 33.333 23.91 0.00 36.54 4.02
250 251 8.196771 CCAGGGAATTAATTTCATGAAAATCGA 58.803 33.333 23.91 11.24 36.54 3.59
251 252 7.981225 ACCAGGGAATTAATTTCATGAAAATCG 59.019 33.333 23.91 6.91 36.54 3.34
252 253 9.101655 CACCAGGGAATTAATTTCATGAAAATC 57.898 33.333 23.91 15.74 36.54 2.17
254 255 7.393216 CCACCAGGGAATTAATTTCATGAAAA 58.607 34.615 23.91 9.13 40.01 2.29
255 256 6.576045 GCCACCAGGGAATTAATTTCATGAAA 60.576 38.462 22.52 22.52 40.01 2.69
256 257 5.104982 GCCACCAGGGAATTAATTTCATGAA 60.105 40.000 20.23 3.38 40.01 2.57
257 258 4.405358 GCCACCAGGGAATTAATTTCATGA 59.595 41.667 20.23 0.00 40.01 3.07
258 259 4.161942 TGCCACCAGGGAATTAATTTCATG 59.838 41.667 13.18 13.18 40.01 3.07
259 260 4.360889 TGCCACCAGGGAATTAATTTCAT 58.639 39.130 8.74 0.00 40.01 2.57
260 261 3.784178 TGCCACCAGGGAATTAATTTCA 58.216 40.909 8.74 0.00 40.01 2.69
261 262 4.817318 TTGCCACCAGGGAATTAATTTC 57.183 40.909 1.43 0.00 40.68 2.17
262 263 5.777526 ATTTGCCACCAGGGAATTAATTT 57.222 34.783 1.43 0.00 45.30 1.82
264 265 8.740616 ATTATATTTGCCACCAGGGAATTAAT 57.259 30.769 0.00 0.00 45.30 1.40
267 268 7.015195 GTGTATTATATTTGCCACCAGGGAATT 59.985 37.037 0.00 0.00 45.30 2.17
269 270 5.830991 GTGTATTATATTTGCCACCAGGGAA 59.169 40.000 0.00 0.00 44.22 3.97
270 271 5.103898 TGTGTATTATATTTGCCACCAGGGA 60.104 40.000 0.00 0.00 40.01 4.20
272 273 6.899393 ATGTGTATTATATTTGCCACCAGG 57.101 37.500 0.00 0.00 38.23 4.45
274 275 9.019656 GGATTATGTGTATTATATTTGCCACCA 57.980 33.333 0.00 0.00 0.00 4.17
275 276 9.019656 TGGATTATGTGTATTATATTTGCCACC 57.980 33.333 0.00 0.00 0.00 4.61
298 299 9.791801 ATACACACTAATGCATAACAATATGGA 57.208 29.630 0.00 0.00 42.98 3.41
302 303 9.389755 ACACATACACACTAATGCATAACAATA 57.610 29.630 0.00 0.00 0.00 1.90
303 304 8.183536 CACACATACACACTAATGCATAACAAT 58.816 33.333 0.00 0.00 0.00 2.71
304 305 7.389053 TCACACATACACACTAATGCATAACAA 59.611 33.333 0.00 0.00 0.00 2.83
305 306 6.876257 TCACACATACACACTAATGCATAACA 59.124 34.615 0.00 0.00 0.00 2.41
306 307 7.302350 TCACACATACACACTAATGCATAAC 57.698 36.000 0.00 0.00 0.00 1.89
307 308 7.913674 TTCACACATACACACTAATGCATAA 57.086 32.000 0.00 0.00 0.00 1.90
308 309 7.913674 TTTCACACATACACACTAATGCATA 57.086 32.000 0.00 0.00 0.00 3.14
309 310 6.816134 TTTCACACATACACACTAATGCAT 57.184 33.333 0.00 0.00 0.00 3.96
310 311 6.816134 ATTTCACACATACACACTAATGCA 57.184 33.333 0.00 0.00 0.00 3.96
311 312 8.196802 TCTATTTCACACATACACACTAATGC 57.803 34.615 0.00 0.00 0.00 3.56
314 315 8.536175 TCCATCTATTTCACACATACACACTAA 58.464 33.333 0.00 0.00 0.00 2.24
315 316 8.073467 TCCATCTATTTCACACATACACACTA 57.927 34.615 0.00 0.00 0.00 2.74
316 317 6.946340 TCCATCTATTTCACACATACACACT 58.054 36.000 0.00 0.00 0.00 3.55
317 318 7.792374 ATCCATCTATTTCACACATACACAC 57.208 36.000 0.00 0.00 0.00 3.82
320 321 9.506018 CCATAATCCATCTATTTCACACATACA 57.494 33.333 0.00 0.00 0.00 2.29
321 322 9.507329 ACCATAATCCATCTATTTCACACATAC 57.493 33.333 0.00 0.00 0.00 2.39
322 323 9.725019 GACCATAATCCATCTATTTCACACATA 57.275 33.333 0.00 0.00 0.00 2.29
327 328 5.643777 CGGGACCATAATCCATCTATTTCAC 59.356 44.000 0.00 0.00 40.96 3.18
328 329 5.309543 ACGGGACCATAATCCATCTATTTCA 59.690 40.000 0.00 0.00 40.96 2.69
331 332 6.295719 GTACGGGACCATAATCCATCTATT 57.704 41.667 0.00 0.00 40.96 1.73
332 333 5.934402 GTACGGGACCATAATCCATCTAT 57.066 43.478 0.00 0.00 40.96 1.98
346 347 2.701951 TCCATCTTATTGGGTACGGGAC 59.298 50.000 0.00 0.00 37.37 4.46
348 349 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
350 351 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
351 352 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
352 353 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
353 354 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
354 355 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
355 356 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
356 357 7.066163 ACACACACACACATATCCATCTTATTG 59.934 37.037 0.00 0.00 0.00 1.90
357 358 7.112122 ACACACACACACATATCCATCTTATT 58.888 34.615 0.00 0.00 0.00 1.40
360 361 4.910195 ACACACACACACATATCCATCTT 58.090 39.130 0.00 0.00 0.00 2.40
363 364 6.048732 TCTAACACACACACACATATCCAT 57.951 37.500 0.00 0.00 0.00 3.41
364 365 5.245075 TCTCTAACACACACACACATATCCA 59.755 40.000 0.00 0.00 0.00 3.41
365 366 5.720202 TCTCTAACACACACACACATATCC 58.280 41.667 0.00 0.00 0.00 2.59
367 368 6.434340 TCTCTCTCTAACACACACACACATAT 59.566 38.462 0.00 0.00 0.00 1.78
368 369 5.768164 TCTCTCTCTAACACACACACACATA 59.232 40.000 0.00 0.00 0.00 2.29
369 370 4.584743 TCTCTCTCTAACACACACACACAT 59.415 41.667 0.00 0.00 0.00 3.21
373 374 3.057174 CCCTCTCTCTCTAACACACACAC 60.057 52.174 0.00 0.00 0.00 3.82
375 376 3.422796 TCCCTCTCTCTCTAACACACAC 58.577 50.000 0.00 0.00 0.00 3.82
376 377 3.330998 TCTCCCTCTCTCTCTAACACACA 59.669 47.826 0.00 0.00 0.00 3.72
377 378 3.945285 CTCTCCCTCTCTCTCTAACACAC 59.055 52.174 0.00 0.00 0.00 3.82
378 379 3.053991 CCTCTCCCTCTCTCTCTAACACA 60.054 52.174 0.00 0.00 0.00 3.72
379 380 3.551846 CCTCTCCCTCTCTCTCTAACAC 58.448 54.545 0.00 0.00 0.00 3.32
380 381 2.512056 CCCTCTCCCTCTCTCTCTAACA 59.488 54.545 0.00 0.00 0.00 2.41
381 382 2.158519 CCCCTCTCCCTCTCTCTCTAAC 60.159 59.091 0.00 0.00 0.00 2.34
382 383 2.140224 CCCCTCTCCCTCTCTCTCTAA 58.860 57.143 0.00 0.00 0.00 2.10
385 386 0.996762 TCCCCCTCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
386 387 0.330431 ATCCCCCTCTCCCTCTCTCT 60.330 60.000 0.00 0.00 0.00 3.10
387 388 1.357761 CTATCCCCCTCTCCCTCTCTC 59.642 61.905 0.00 0.00 0.00 3.20
388 389 1.059364 TCTATCCCCCTCTCCCTCTCT 60.059 57.143 0.00 0.00 0.00 3.10
389 390 1.357761 CTCTATCCCCCTCTCCCTCTC 59.642 61.905 0.00 0.00 0.00 3.20
390 391 1.059364 TCTCTATCCCCCTCTCCCTCT 60.059 57.143 0.00 0.00 0.00 3.69
391 392 1.357761 CTCTCTATCCCCCTCTCCCTC 59.642 61.905 0.00 0.00 0.00 4.30
392 393 1.348160 ACTCTCTATCCCCCTCTCCCT 60.348 57.143 0.00 0.00 0.00 4.20
393 394 1.163408 ACTCTCTATCCCCCTCTCCC 58.837 60.000 0.00 0.00 0.00 4.30
394 395 1.783979 TCACTCTCTATCCCCCTCTCC 59.216 57.143 0.00 0.00 0.00 3.71
397 398 1.783979 TCCTCACTCTCTATCCCCCTC 59.216 57.143 0.00 0.00 0.00 4.30
399 400 2.178106 TCTTCCTCACTCTCTATCCCCC 59.822 54.545 0.00 0.00 0.00 5.40
403 404 4.398319 CTCCCTCTTCCTCACTCTCTATC 58.602 52.174 0.00 0.00 0.00 2.08
404 405 3.140144 CCTCCCTCTTCCTCACTCTCTAT 59.860 52.174 0.00 0.00 0.00 1.98
405 406 2.512056 CCTCCCTCTTCCTCACTCTCTA 59.488 54.545 0.00 0.00 0.00 2.43
407 408 1.687996 CCCTCCCTCTTCCTCACTCTC 60.688 61.905 0.00 0.00 0.00 3.20
408 409 0.338120 CCCTCCCTCTTCCTCACTCT 59.662 60.000 0.00 0.00 0.00 3.24
409 410 0.336737 TCCCTCCCTCTTCCTCACTC 59.663 60.000 0.00 0.00 0.00 3.51
410 411 0.338120 CTCCCTCCCTCTTCCTCACT 59.662 60.000 0.00 0.00 0.00 3.41
411 412 0.336737 TCTCCCTCCCTCTTCCTCAC 59.663 60.000 0.00 0.00 0.00 3.51
412 413 0.633921 CTCTCCCTCCCTCTTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
413 414 0.634465 ACTCTCCCTCCCTCTTCCTC 59.366 60.000 0.00 0.00 0.00 3.71
414 415 0.338120 CACTCTCCCTCCCTCTTCCT 59.662 60.000 0.00 0.00 0.00 3.36
416 417 1.190643 CACACTCTCCCTCCCTCTTC 58.809 60.000 0.00 0.00 0.00 2.87
417 418 0.489567 ACACACTCTCCCTCCCTCTT 59.510 55.000 0.00 0.00 0.00 2.85
418 419 0.252012 CACACACTCTCCCTCCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
420 421 0.543174 GACACACACTCTCCCTCCCT 60.543 60.000 0.00 0.00 0.00 4.20
421 422 0.543174 AGACACACACTCTCCCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
422 423 1.343069 AAGACACACACTCTCCCTCC 58.657 55.000 0.00 0.00 0.00 4.30
425 426 2.213499 CACAAAGACACACACTCTCCC 58.787 52.381 0.00 0.00 0.00 4.30
426 427 2.609459 CACACAAAGACACACACTCTCC 59.391 50.000 0.00 0.00 0.00 3.71
427 428 3.062639 CACACACAAAGACACACACTCTC 59.937 47.826 0.00 0.00 0.00 3.20
428 429 3.002791 CACACACAAAGACACACACTCT 58.997 45.455 0.00 0.00 0.00 3.24
429 430 3.000041 TCACACACAAAGACACACACTC 59.000 45.455 0.00 0.00 0.00 3.51
430 431 3.002791 CTCACACACAAAGACACACACT 58.997 45.455 0.00 0.00 0.00 3.55
431 432 2.095853 CCTCACACACAAAGACACACAC 59.904 50.000 0.00 0.00 0.00 3.82
432 433 2.027653 TCCTCACACACAAAGACACACA 60.028 45.455 0.00 0.00 0.00 3.72
434 435 3.558931 ATCCTCACACACAAAGACACA 57.441 42.857 0.00 0.00 0.00 3.72
435 436 4.335315 TCAAATCCTCACACACAAAGACAC 59.665 41.667 0.00 0.00 0.00 3.67
436 437 4.522114 TCAAATCCTCACACACAAAGACA 58.478 39.130 0.00 0.00 0.00 3.41
437 438 5.455392 CATCAAATCCTCACACACAAAGAC 58.545 41.667 0.00 0.00 0.00 3.01
438 439 4.520111 CCATCAAATCCTCACACACAAAGA 59.480 41.667 0.00 0.00 0.00 2.52
439 440 4.279169 ACCATCAAATCCTCACACACAAAG 59.721 41.667 0.00 0.00 0.00 2.77
440 441 4.214310 ACCATCAAATCCTCACACACAAA 58.786 39.130 0.00 0.00 0.00 2.83
441 442 3.831323 ACCATCAAATCCTCACACACAA 58.169 40.909 0.00 0.00 0.00 3.33
443 444 5.957842 TTTACCATCAAATCCTCACACAC 57.042 39.130 0.00 0.00 0.00 3.82
444 445 6.968263 TTTTTACCATCAAATCCTCACACA 57.032 33.333 0.00 0.00 0.00 3.72
465 466 2.172851 TACGACATTGGCGACCTTTT 57.827 45.000 20.74 0.00 0.00 2.27
466 467 2.172851 TTACGACATTGGCGACCTTT 57.827 45.000 20.74 0.00 0.00 3.11
468 469 3.746045 ATATTACGACATTGGCGACCT 57.254 42.857 20.74 4.55 0.00 3.85
470 471 5.006358 AGTTCAATATTACGACATTGGCGAC 59.994 40.000 20.74 2.50 33.77 5.19
471 472 5.113383 AGTTCAATATTACGACATTGGCGA 58.887 37.500 20.74 0.00 33.77 5.54
472 473 5.234329 AGAGTTCAATATTACGACATTGGCG 59.766 40.000 11.09 11.09 33.77 5.69
486 487 8.736244 GGCCACATTAACTTTAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
487 488 7.309805 GGGCCACATTAACTTTAAGAGTTCAAT 60.310 37.037 4.39 4.32 45.40 2.57
488 489 6.015772 GGGCCACATTAACTTTAAGAGTTCAA 60.016 38.462 4.39 2.81 45.40 2.69
489 490 5.475564 GGGCCACATTAACTTTAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
490 491 5.105877 GGGGCCACATTAACTTTAAGAGTTC 60.106 44.000 4.39 0.00 45.40 3.01
493 494 3.377172 CGGGGCCACATTAACTTTAAGAG 59.623 47.826 5.46 0.00 0.00 2.85
494 495 3.244981 ACGGGGCCACATTAACTTTAAGA 60.245 43.478 5.46 0.00 0.00 2.10
495 496 3.086282 ACGGGGCCACATTAACTTTAAG 58.914 45.455 5.46 0.00 0.00 1.85
497 498 2.820787 CAACGGGGCCACATTAACTTTA 59.179 45.455 5.46 0.00 0.00 1.85
498 499 1.616374 CAACGGGGCCACATTAACTTT 59.384 47.619 5.46 0.00 0.00 2.66
499 500 1.253100 CAACGGGGCCACATTAACTT 58.747 50.000 5.46 0.00 0.00 2.66
500 501 1.248101 GCAACGGGGCCACATTAACT 61.248 55.000 5.46 0.00 0.00 2.24
501 502 1.214325 GCAACGGGGCCACATTAAC 59.786 57.895 5.46 0.00 0.00 2.01
502 503 0.827925 TTGCAACGGGGCCACATTAA 60.828 50.000 5.46 0.00 0.00 1.40
503 504 1.228583 TTGCAACGGGGCCACATTA 60.229 52.632 5.46 0.00 0.00 1.90
504 505 2.522923 TTGCAACGGGGCCACATT 60.523 55.556 5.46 0.00 0.00 2.71
505 506 3.302344 GTTGCAACGGGGCCACAT 61.302 61.111 14.90 0.00 30.39 3.21
515 516 3.839642 AATGCCCGTGCGTTGCAAC 62.840 57.895 19.89 19.89 44.90 4.17
516 517 3.550339 GAATGCCCGTGCGTTGCAA 62.550 57.895 0.86 0.00 46.55 4.08
517 518 4.036804 GAATGCCCGTGCGTTGCA 62.037 61.111 0.86 8.11 46.55 4.08
521 522 0.460284 CTAGAAGAATGCCCGTGCGT 60.460 55.000 0.00 0.00 41.78 5.24
522 523 0.460284 ACTAGAAGAATGCCCGTGCG 60.460 55.000 0.00 0.00 41.78 5.34
523 524 1.739067 AACTAGAAGAATGCCCGTGC 58.261 50.000 0.00 0.00 38.26 5.34
525 526 3.600388 CTGAAACTAGAAGAATGCCCGT 58.400 45.455 0.00 0.00 0.00 5.28
526 527 2.352960 GCTGAAACTAGAAGAATGCCCG 59.647 50.000 0.00 0.00 0.00 6.13
527 528 3.347216 TGCTGAAACTAGAAGAATGCCC 58.653 45.455 0.00 0.00 0.00 5.36
528 529 3.181502 GCTGCTGAAACTAGAAGAATGCC 60.182 47.826 0.00 0.00 0.00 4.40
529 530 3.438087 TGCTGCTGAAACTAGAAGAATGC 59.562 43.478 0.00 0.00 0.00 3.56
531 532 4.006319 GGTGCTGCTGAAACTAGAAGAAT 58.994 43.478 0.00 0.00 0.00 2.40
532 533 3.403038 GGTGCTGCTGAAACTAGAAGAA 58.597 45.455 0.00 0.00 0.00 2.52
533 534 2.289694 GGGTGCTGCTGAAACTAGAAGA 60.290 50.000 0.00 0.00 0.00 2.87
534 535 2.079925 GGGTGCTGCTGAAACTAGAAG 58.920 52.381 0.00 0.00 0.00 2.85
535 536 1.608025 CGGGTGCTGCTGAAACTAGAA 60.608 52.381 0.00 0.00 0.00 2.10
536 537 0.037326 CGGGTGCTGCTGAAACTAGA 60.037 55.000 0.00 0.00 0.00 2.43
538 539 0.320421 GTCGGGTGCTGCTGAAACTA 60.320 55.000 0.00 0.00 0.00 2.24
540 541 2.617274 GGTCGGGTGCTGCTGAAAC 61.617 63.158 0.00 0.00 0.00 2.78
627 3865 1.673665 GCAAGACACCAGCCCTCTG 60.674 63.158 0.00 0.00 40.02 3.35
672 3916 3.138798 GGTAGAGGAGGCGCGTCA 61.139 66.667 29.07 8.06 33.89 4.35
705 3952 0.312102 CGATGAGCTCGTAGATGGCA 59.688 55.000 8.83 0.00 42.56 4.92
823 4073 1.530013 TTGGAGACGGGGTCGAGAAC 61.530 60.000 0.00 0.00 37.67 3.01
825 4075 1.975407 GTTGGAGACGGGGTCGAGA 60.975 63.158 0.00 0.00 37.67 4.04
957 4234 2.036346 GCAGGACCTGTTTGCAATTTCT 59.964 45.455 22.58 0.00 37.75 2.52
996 4273 3.244215 GGCATCCGAAATAGACCATGAGA 60.244 47.826 0.00 0.00 0.00 3.27
1224 4513 3.243771 GGTGAAAGTCGTCCTCTTTGAGA 60.244 47.826 0.00 0.00 35.62 3.27
1258 4550 3.620821 GGATCTGCTGCTGAAAAGAGTAC 59.379 47.826 13.26 0.00 0.00 2.73
1483 4788 2.343426 ACTGCAGCGACGAGATGGA 61.343 57.895 15.27 0.00 36.61 3.41
1582 4896 2.514013 GGTAATCGCAGGCGTCACG 61.514 63.158 13.83 0.00 40.74 4.35
1760 5074 2.553028 CCTTGGCTGTTGTACCAGATGT 60.553 50.000 3.57 0.00 37.24 3.06
1787 5101 2.682352 CTGCGATCAGACTCTGAGAGAA 59.318 50.000 17.71 4.81 44.08 2.87
2164 5496 3.498082 TCATACGAAGTGTCATGTCACG 58.502 45.455 15.80 8.32 45.73 4.35
2165 5497 3.859961 CCTCATACGAAGTGTCATGTCAC 59.140 47.826 14.28 14.28 45.73 3.67
2197 5529 4.401519 AGTTTTAGCAGCCGAGTATCTACA 59.598 41.667 0.00 0.00 0.00 2.74
2199 5531 4.202121 CCAGTTTTAGCAGCCGAGTATCTA 60.202 45.833 0.00 0.00 0.00 1.98
2443 5819 3.251004 GTGGTTCCTACAACAAGAAGCAG 59.749 47.826 4.29 0.00 45.55 4.24
2448 5824 5.818678 ATACTGTGGTTCCTACAACAAGA 57.181 39.130 0.00 0.00 37.75 3.02
2520 5900 1.538419 GGTAGCACATCTTACCCGAGC 60.538 57.143 0.00 0.00 0.00 5.03
2660 6043 3.013073 AGAGAAACTAGAGGGGGCTTACT 59.987 47.826 0.00 0.00 0.00 2.24
2765 6149 1.448540 CCAGAGTAGCAACGGCCTG 60.449 63.158 0.00 0.00 42.56 4.85
2835 6219 2.401017 CGTCATCGGTGATATCGTGT 57.599 50.000 0.00 0.00 36.60 4.49
3103 6515 0.322322 AGGCAACCAAACATGCATGG 59.678 50.000 29.41 16.71 44.32 3.66
3122 6534 3.926527 CACGTGCATAAGAGTAGCTCAAA 59.073 43.478 0.82 0.00 32.06 2.69
3183 6733 3.103911 CACGGGCTTCACGACGAC 61.104 66.667 0.00 0.00 34.93 4.34
3286 6836 3.564053 AACTACCTCCACGGTCAAAAA 57.436 42.857 0.00 0.00 44.93 1.94
3287 6837 4.040706 ACATAACTACCTCCACGGTCAAAA 59.959 41.667 0.00 0.00 44.93 2.44
3288 6838 3.579586 ACATAACTACCTCCACGGTCAAA 59.420 43.478 0.00 0.00 44.93 2.69
3289 6839 3.167485 ACATAACTACCTCCACGGTCAA 58.833 45.455 0.00 0.00 44.93 3.18
3290 6840 2.811410 ACATAACTACCTCCACGGTCA 58.189 47.619 0.00 0.00 44.93 4.02
3291 6841 3.881937 AACATAACTACCTCCACGGTC 57.118 47.619 0.00 0.00 44.93 4.79
3293 6843 4.081531 TGGTAAACATAACTACCTCCACGG 60.082 45.833 0.00 0.00 38.74 4.94
3294 6844 5.075858 TGGTAAACATAACTACCTCCACG 57.924 43.478 0.00 0.00 38.74 4.94
3295 6845 6.104665 GTCTGGTAAACATAACTACCTCCAC 58.895 44.000 0.00 0.00 38.74 4.02
3296 6846 5.105635 CGTCTGGTAAACATAACTACCTCCA 60.106 44.000 0.00 0.00 38.74 3.86
3297 6847 5.346522 CGTCTGGTAAACATAACTACCTCC 58.653 45.833 0.00 0.00 38.74 4.30
3298 6848 5.346522 CCGTCTGGTAAACATAACTACCTC 58.653 45.833 0.00 0.00 38.74 3.85
3299 6849 4.161001 CCCGTCTGGTAAACATAACTACCT 59.839 45.833 0.00 0.00 38.74 3.08
3300 6850 4.436332 CCCGTCTGGTAAACATAACTACC 58.564 47.826 0.00 0.00 38.47 3.18
3315 6865 2.036733 TGGAGTTACAAGAACCCGTCTG 59.963 50.000 0.00 0.00 36.40 3.51
3347 6897 9.988350 AAAGACTCGCATGTAACAAAATATAAG 57.012 29.630 0.00 0.00 0.00 1.73
3487 7239 5.665916 TCTCTCATGCATGAACAACTAGA 57.334 39.130 28.39 18.81 36.18 2.43
3667 7419 0.606130 TGTTCAGATGGCACGCACAT 60.606 50.000 0.00 0.00 0.00 3.21
3855 7607 1.003118 GTTGACACCCATCTACTGCCA 59.997 52.381 0.00 0.00 0.00 4.92
3930 7682 2.099098 CCCCTCGATAAAAATGCACCAC 59.901 50.000 0.00 0.00 0.00 4.16
3934 7686 3.694072 CAGTTCCCCTCGATAAAAATGCA 59.306 43.478 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.