Multiple sequence alignment - TraesCS7A01G078000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G078000 chr7A 100.000 3119 0 0 1 3119 42962669 42965787 0.000000e+00 5760.0
1 TraesCS7A01G078000 chr7A 94.485 1106 49 4 1008 2101 42541066 42539961 0.000000e+00 1694.0
2 TraesCS7A01G078000 chr7A 78.279 244 37 8 732 963 42791522 42791761 3.240000e-30 143.0
3 TraesCS7A01G078000 chr7A 81.287 171 19 7 1410 1580 736014935 736015092 3.270000e-25 126.0
4 TraesCS7A01G078000 chr4A 92.539 2332 122 26 824 3119 650872235 650869920 0.000000e+00 3295.0
5 TraesCS7A01G078000 chr7D 91.136 2042 111 29 732 2732 43115513 43117525 0.000000e+00 2704.0
6 TraesCS7A01G078000 chr7D 92.864 1121 68 3 1000 2108 42927326 42926206 0.000000e+00 1616.0
7 TraesCS7A01G078000 chr7D 90.434 784 43 8 2346 3119 43117523 43118284 0.000000e+00 1003.0
8 TraesCS7A01G078000 chr7D 83.838 198 25 1 2922 3119 43122079 43122269 6.870000e-42 182.0
9 TraesCS7A01G078000 chr7D 85.057 87 8 3 1410 1496 204881499 204881418 1.990000e-12 84.2
10 TraesCS7A01G078000 chr3B 95.299 787 22 6 1000 1771 142727056 142726270 0.000000e+00 1234.0
11 TraesCS7A01G078000 chr2D 90.563 657 33 6 2346 2991 87981309 87980671 0.000000e+00 843.0
12 TraesCS7A01G078000 chr2D 85.312 320 31 10 2415 2732 87981612 87981307 1.810000e-82 316.0
13 TraesCS7A01G078000 chr2D 97.222 72 2 0 1100 1171 87983440 87983369 4.220000e-24 122.0
14 TraesCS7A01G078000 chr6A 88.110 656 46 13 2346 2991 376680615 376679982 0.000000e+00 750.0
15 TraesCS7A01G078000 chr6A 84.375 320 34 10 2415 2732 376680918 376680613 1.820000e-77 300.0
16 TraesCS7A01G078000 chr3A 97.909 287 6 0 1482 1768 640698297 640698583 6.010000e-137 497.0
17 TraesCS7A01G078000 chr1B 87.105 411 34 4 2346 2755 621202527 621202919 6.140000e-122 448.0
18 TraesCS7A01G078000 chr3D 86.039 308 18 10 1410 1716 597186192 597186475 1.090000e-79 307.0
19 TraesCS7A01G078000 chr3D 86.039 308 18 10 1410 1716 597190301 597190584 1.090000e-79 307.0
20 TraesCS7A01G078000 chr6B 85.479 303 28 6 1415 1716 483536362 483536649 5.060000e-78 302.0
21 TraesCS7A01G078000 chr5A 87.273 110 4 4 1534 1643 564766807 564766708 1.970000e-22 117.0
22 TraesCS7A01G078000 chr1A 85.088 114 12 3 1410 1523 351994910 351995018 9.140000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G078000 chr7A 42962669 42965787 3118 False 5760.000000 5760 100.000000 1 3119 1 chr7A.!!$F2 3118
1 TraesCS7A01G078000 chr7A 42539961 42541066 1105 True 1694.000000 1694 94.485000 1008 2101 1 chr7A.!!$R1 1093
2 TraesCS7A01G078000 chr4A 650869920 650872235 2315 True 3295.000000 3295 92.539000 824 3119 1 chr4A.!!$R1 2295
3 TraesCS7A01G078000 chr7D 42926206 42927326 1120 True 1616.000000 1616 92.864000 1000 2108 1 chr7D.!!$R1 1108
4 TraesCS7A01G078000 chr7D 43115513 43122269 6756 False 1296.333333 2704 88.469333 732 3119 3 chr7D.!!$F1 2387
5 TraesCS7A01G078000 chr3B 142726270 142727056 786 True 1234.000000 1234 95.299000 1000 1771 1 chr3B.!!$R1 771
6 TraesCS7A01G078000 chr2D 87980671 87983440 2769 True 427.000000 843 91.032333 1100 2991 3 chr2D.!!$R1 1891
7 TraesCS7A01G078000 chr6A 376679982 376680918 936 True 525.000000 750 86.242500 2346 2991 2 chr6A.!!$R1 645
8 TraesCS7A01G078000 chr3D 597186192 597190584 4392 False 307.000000 307 86.039000 1410 1716 2 chr3D.!!$F1 306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.033601 TTGACTTTGCAGGGTGGTGT 60.034 50.0 0.0 0.0 0.0 4.16 F
669 670 0.240945 AAAAATCCAGTTGCCGCTCG 59.759 50.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 6116 0.693049 GGACCTTCTCCTTCTTGGCA 59.307 55.0 0.00 0.00 35.89 4.92 R
2554 6987 0.793478 CTCACGCTCTTCACGTACGG 60.793 60.0 21.06 8.79 42.96 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.896039 AGTCCCTTACTGCTTGTCTCT 58.104 47.619 0.00 0.00 36.93 3.10
32 33 4.048970 AGTCCCTTACTGCTTGTCTCTA 57.951 45.455 0.00 0.00 36.93 2.43
33 34 4.417437 AGTCCCTTACTGCTTGTCTCTAA 58.583 43.478 0.00 0.00 36.93 2.10
34 35 4.464597 AGTCCCTTACTGCTTGTCTCTAAG 59.535 45.833 0.00 0.00 36.93 2.18
35 36 4.221041 GTCCCTTACTGCTTGTCTCTAAGT 59.779 45.833 0.00 0.00 0.00 2.24
37 38 6.014647 TCCCTTACTGCTTGTCTCTAAGTTA 58.985 40.000 0.00 0.00 0.00 2.24
38 39 6.071503 TCCCTTACTGCTTGTCTCTAAGTTAC 60.072 42.308 0.00 0.00 0.00 2.50
41 42 4.161102 ACTGCTTGTCTCTAAGTTACCCT 58.839 43.478 0.00 0.00 0.00 4.34
42 43 5.331069 ACTGCTTGTCTCTAAGTTACCCTA 58.669 41.667 0.00 0.00 0.00 3.53
43 44 5.958987 ACTGCTTGTCTCTAAGTTACCCTAT 59.041 40.000 0.00 0.00 0.00 2.57
44 45 6.440965 ACTGCTTGTCTCTAAGTTACCCTATT 59.559 38.462 0.00 0.00 0.00 1.73
46 47 8.548880 TGCTTGTCTCTAAGTTACCCTATTAT 57.451 34.615 0.00 0.00 0.00 1.28
47 48 8.421784 TGCTTGTCTCTAAGTTACCCTATTATG 58.578 37.037 0.00 0.00 0.00 1.90
49 50 7.907841 TGTCTCTAAGTTACCCTATTATGCA 57.092 36.000 0.00 0.00 0.00 3.96
51 52 8.421784 TGTCTCTAAGTTACCCTATTATGCAAG 58.578 37.037 0.00 0.00 0.00 4.01
52 53 8.422566 GTCTCTAAGTTACCCTATTATGCAAGT 58.577 37.037 0.00 0.00 0.00 3.16
54 55 8.313944 TCTAAGTTACCCTATTATGCAAGTCA 57.686 34.615 0.00 0.00 0.00 3.41
56 57 6.561519 AGTTACCCTATTATGCAAGTCACT 57.438 37.500 0.00 0.00 0.00 3.41
57 58 6.349300 AGTTACCCTATTATGCAAGTCACTG 58.651 40.000 0.00 0.00 0.00 3.66
58 59 6.156256 AGTTACCCTATTATGCAAGTCACTGA 59.844 38.462 0.00 0.00 0.00 3.41
59 60 5.435686 ACCCTATTATGCAAGTCACTGAA 57.564 39.130 0.00 0.00 0.00 3.02
60 61 6.006275 ACCCTATTATGCAAGTCACTGAAT 57.994 37.500 0.00 0.00 0.00 2.57
61 62 5.824624 ACCCTATTATGCAAGTCACTGAATG 59.175 40.000 0.00 0.00 0.00 2.67
62 63 6.057533 CCCTATTATGCAAGTCACTGAATGA 58.942 40.000 0.00 0.00 33.79 2.57
63 64 6.713903 CCCTATTATGCAAGTCACTGAATGAT 59.286 38.462 0.00 0.00 40.28 2.45
64 65 7.230108 CCCTATTATGCAAGTCACTGAATGATT 59.770 37.037 0.00 0.00 40.28 2.57
65 66 8.074370 CCTATTATGCAAGTCACTGAATGATTG 58.926 37.037 0.00 0.00 40.28 2.67
67 68 4.492791 TGCAAGTCACTGAATGATTGTG 57.507 40.909 0.00 0.00 40.28 3.33
68 69 3.884693 TGCAAGTCACTGAATGATTGTGT 59.115 39.130 0.00 0.00 40.28 3.72
69 70 4.023792 TGCAAGTCACTGAATGATTGTGTC 60.024 41.667 0.00 0.00 40.28 3.67
70 71 4.214971 GCAAGTCACTGAATGATTGTGTCT 59.785 41.667 0.00 0.00 40.28 3.41
71 72 5.409520 GCAAGTCACTGAATGATTGTGTCTA 59.590 40.000 0.00 0.00 40.28 2.59
72 73 6.093219 GCAAGTCACTGAATGATTGTGTCTAT 59.907 38.462 0.00 0.00 40.28 1.98
73 74 7.461918 CAAGTCACTGAATGATTGTGTCTATG 58.538 38.462 0.00 0.00 40.28 2.23
74 75 6.939622 AGTCACTGAATGATTGTGTCTATGA 58.060 36.000 0.00 0.00 40.28 2.15
75 76 7.563020 AGTCACTGAATGATTGTGTCTATGAT 58.437 34.615 0.00 0.00 40.28 2.45
76 77 8.699130 AGTCACTGAATGATTGTGTCTATGATA 58.301 33.333 0.00 0.00 40.28 2.15
77 78 9.317936 GTCACTGAATGATTGTGTCTATGATAA 57.682 33.333 0.00 0.00 40.28 1.75
78 79 9.538508 TCACTGAATGATTGTGTCTATGATAAG 57.461 33.333 0.00 0.00 33.82 1.73
79 80 9.538508 CACTGAATGATTGTGTCTATGATAAGA 57.461 33.333 0.00 0.00 0.00 2.10
90 91 9.301897 TGTGTCTATGATAAGATATAGCAGTGT 57.698 33.333 0.00 0.00 0.00 3.55
99 100 9.265901 GATAAGATATAGCAGTGTTGTCAATGT 57.734 33.333 0.00 0.00 41.04 2.71
100 101 6.915544 AGATATAGCAGTGTTGTCAATGTG 57.084 37.500 0.00 0.00 41.04 3.21
102 103 2.057137 AGCAGTGTTGTCAATGTGGT 57.943 45.000 0.00 0.00 41.04 4.16
104 105 1.269206 GCAGTGTTGTCAATGTGGTGG 60.269 52.381 0.00 0.00 41.04 4.61
105 106 2.023673 CAGTGTTGTCAATGTGGTGGT 58.976 47.619 0.00 0.00 35.32 4.16
106 107 2.426738 CAGTGTTGTCAATGTGGTGGTT 59.573 45.455 0.00 0.00 35.32 3.67
107 108 3.096092 AGTGTTGTCAATGTGGTGGTTT 58.904 40.909 0.00 0.00 0.00 3.27
108 109 4.097135 CAGTGTTGTCAATGTGGTGGTTTA 59.903 41.667 0.00 0.00 35.32 2.01
109 110 4.338118 AGTGTTGTCAATGTGGTGGTTTAG 59.662 41.667 0.00 0.00 0.00 1.85
110 111 4.097286 GTGTTGTCAATGTGGTGGTTTAGT 59.903 41.667 0.00 0.00 0.00 2.24
111 112 4.707448 TGTTGTCAATGTGGTGGTTTAGTT 59.293 37.500 0.00 0.00 0.00 2.24
112 113 5.886474 TGTTGTCAATGTGGTGGTTTAGTTA 59.114 36.000 0.00 0.00 0.00 2.24
113 114 6.547880 TGTTGTCAATGTGGTGGTTTAGTTAT 59.452 34.615 0.00 0.00 0.00 1.89
115 116 6.299922 TGTCAATGTGGTGGTTTAGTTATCA 58.700 36.000 0.00 0.00 0.00 2.15
116 117 6.945435 TGTCAATGTGGTGGTTTAGTTATCAT 59.055 34.615 0.00 0.00 0.00 2.45
117 118 8.103935 TGTCAATGTGGTGGTTTAGTTATCATA 58.896 33.333 0.00 0.00 0.00 2.15
118 119 9.120538 GTCAATGTGGTGGTTTAGTTATCATAT 57.879 33.333 0.00 0.00 0.00 1.78
121 122 9.793259 AATGTGGTGGTTTAGTTATCATATAGG 57.207 33.333 0.00 0.00 0.00 2.57
122 123 8.326765 TGTGGTGGTTTAGTTATCATATAGGT 57.673 34.615 0.00 0.00 0.00 3.08
123 124 8.208224 TGTGGTGGTTTAGTTATCATATAGGTG 58.792 37.037 0.00 0.00 0.00 4.00
124 125 8.208903 GTGGTGGTTTAGTTATCATATAGGTGT 58.791 37.037 0.00 0.00 0.00 4.16
125 126 8.774183 TGGTGGTTTAGTTATCATATAGGTGTT 58.226 33.333 0.00 0.00 0.00 3.32
126 127 9.052759 GGTGGTTTAGTTATCATATAGGTGTTG 57.947 37.037 0.00 0.00 0.00 3.33
127 128 9.826574 GTGGTTTAGTTATCATATAGGTGTTGA 57.173 33.333 0.00 0.00 0.00 3.18
146 147 9.601217 GGTGTTGAATATCTAGATTAAGTGTGT 57.399 33.333 11.25 0.00 0.00 3.72
171 172 9.301153 GTGTAATTATATTTTGACTTTGCAGGG 57.699 33.333 0.00 0.00 0.00 4.45
172 173 9.030452 TGTAATTATATTTTGACTTTGCAGGGT 57.970 29.630 0.00 0.00 0.00 4.34
173 174 9.301153 GTAATTATATTTTGACTTTGCAGGGTG 57.699 33.333 0.00 0.00 0.00 4.61
175 176 1.859302 TTTTGACTTTGCAGGGTGGT 58.141 45.000 0.00 0.00 0.00 4.16
176 177 1.110442 TTTGACTTTGCAGGGTGGTG 58.890 50.000 0.00 0.00 0.00 4.17
177 178 0.033601 TTGACTTTGCAGGGTGGTGT 60.034 50.000 0.00 0.00 0.00 4.16
179 180 1.213182 TGACTTTGCAGGGTGGTGTTA 59.787 47.619 0.00 0.00 0.00 2.41
180 181 2.303175 GACTTTGCAGGGTGGTGTTAA 58.697 47.619 0.00 0.00 0.00 2.01
181 182 2.028876 ACTTTGCAGGGTGGTGTTAAC 58.971 47.619 0.00 0.00 0.00 2.01
182 183 2.306847 CTTTGCAGGGTGGTGTTAACT 58.693 47.619 7.22 0.00 0.00 2.24
184 185 0.548989 TGCAGGGTGGTGTTAACTGT 59.451 50.000 7.22 0.00 0.00 3.55
185 186 0.951558 GCAGGGTGGTGTTAACTGTG 59.048 55.000 7.22 0.00 0.00 3.66
186 187 0.951558 CAGGGTGGTGTTAACTGTGC 59.048 55.000 7.22 0.00 0.00 4.57
188 189 1.512156 GGGTGGTGTTAACTGTGCGG 61.512 60.000 7.22 0.00 0.00 5.69
189 190 0.816421 GGTGGTGTTAACTGTGCGGT 60.816 55.000 7.22 0.00 0.00 5.68
190 191 1.018910 GTGGTGTTAACTGTGCGGTT 58.981 50.000 7.22 1.82 0.00 4.44
191 192 1.018148 TGGTGTTAACTGTGCGGTTG 58.982 50.000 7.22 0.00 0.00 3.77
192 193 1.018910 GGTGTTAACTGTGCGGTTGT 58.981 50.000 7.22 0.00 0.00 3.32
202 203 3.964875 GCGGTTGTGCAGTGGGTG 61.965 66.667 0.00 0.00 34.15 4.61
203 204 3.286751 CGGTTGTGCAGTGGGTGG 61.287 66.667 0.00 0.00 0.00 4.61
205 206 1.228552 GGTTGTGCAGTGGGTGGAT 60.229 57.895 0.00 0.00 0.00 3.41
206 207 1.526575 GGTTGTGCAGTGGGTGGATG 61.527 60.000 0.00 0.00 0.00 3.51
208 209 3.064324 GTGCAGTGGGTGGATGCC 61.064 66.667 0.00 0.00 39.22 4.40
224 225 3.577389 GCCCTTGGCTTGACATACT 57.423 52.632 0.00 0.00 46.69 2.12
226 227 1.098050 CCCTTGGCTTGACATACTGC 58.902 55.000 0.00 0.00 0.00 4.40
227 228 1.614051 CCCTTGGCTTGACATACTGCA 60.614 52.381 0.00 0.00 0.00 4.41
228 229 2.161855 CCTTGGCTTGACATACTGCAA 58.838 47.619 0.00 0.00 0.00 4.08
230 231 3.005684 CCTTGGCTTGACATACTGCAAAA 59.994 43.478 0.00 0.00 0.00 2.44
231 232 3.921119 TGGCTTGACATACTGCAAAAG 57.079 42.857 0.00 0.00 0.00 2.27
232 233 3.221771 TGGCTTGACATACTGCAAAAGT 58.778 40.909 0.00 0.00 43.40 2.66
233 234 3.004629 TGGCTTGACATACTGCAAAAGTG 59.995 43.478 0.00 0.00 40.26 3.16
244 245 1.783284 GCAAAAGTGCCTAACCAAGC 58.217 50.000 0.00 0.00 45.68 4.01
245 246 1.341209 GCAAAAGTGCCTAACCAAGCT 59.659 47.619 0.00 0.00 45.68 3.74
246 247 2.608016 GCAAAAGTGCCTAACCAAGCTC 60.608 50.000 0.00 0.00 45.68 4.09
247 248 2.887152 CAAAAGTGCCTAACCAAGCTCT 59.113 45.455 0.00 0.00 34.48 4.09
250 251 1.277557 AGTGCCTAACCAAGCTCTGAG 59.722 52.381 0.00 0.00 31.99 3.35
251 252 1.276421 GTGCCTAACCAAGCTCTGAGA 59.724 52.381 9.28 0.00 0.00 3.27
252 253 2.093235 GTGCCTAACCAAGCTCTGAGAT 60.093 50.000 9.28 0.00 0.00 2.75
253 254 3.133003 GTGCCTAACCAAGCTCTGAGATA 59.867 47.826 9.28 0.00 0.00 1.98
255 256 3.797184 GCCTAACCAAGCTCTGAGATACG 60.797 52.174 9.28 0.00 0.00 3.06
256 257 3.381908 CCTAACCAAGCTCTGAGATACGT 59.618 47.826 9.28 0.00 0.00 3.57
257 258 4.579340 CCTAACCAAGCTCTGAGATACGTA 59.421 45.833 9.28 0.00 0.00 3.57
258 259 4.373348 AACCAAGCTCTGAGATACGTAC 57.627 45.455 9.28 0.00 0.00 3.67
260 261 2.688446 CCAAGCTCTGAGATACGTACCA 59.312 50.000 9.28 0.00 0.00 3.25
261 262 3.319405 CCAAGCTCTGAGATACGTACCAT 59.681 47.826 9.28 0.00 0.00 3.55
262 263 4.294232 CAAGCTCTGAGATACGTACCATG 58.706 47.826 9.28 0.00 0.00 3.66
263 264 3.821748 AGCTCTGAGATACGTACCATGA 58.178 45.455 9.28 0.00 0.00 3.07
265 266 3.610585 GCTCTGAGATACGTACCATGAGC 60.611 52.174 9.28 17.34 37.76 4.26
266 267 3.551846 TCTGAGATACGTACCATGAGCA 58.448 45.455 0.00 0.00 0.00 4.26
267 268 4.145052 TCTGAGATACGTACCATGAGCAT 58.855 43.478 0.00 0.00 0.00 3.79
268 269 5.313712 TCTGAGATACGTACCATGAGCATA 58.686 41.667 0.00 0.00 0.00 3.14
269 270 5.768164 TCTGAGATACGTACCATGAGCATAA 59.232 40.000 0.00 0.00 0.00 1.90
272 273 6.868339 TGAGATACGTACCATGAGCATAAATG 59.132 38.462 0.00 0.00 0.00 2.32
273 274 6.759272 AGATACGTACCATGAGCATAAATGT 58.241 36.000 0.00 0.00 0.00 2.71
274 275 6.646653 AGATACGTACCATGAGCATAAATGTG 59.353 38.462 0.00 0.00 0.00 3.21
275 276 4.513442 ACGTACCATGAGCATAAATGTGT 58.487 39.130 0.00 0.00 0.00 3.72
276 277 4.941263 ACGTACCATGAGCATAAATGTGTT 59.059 37.500 0.00 0.00 0.00 3.32
277 278 5.163764 ACGTACCATGAGCATAAATGTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
279 280 4.343231 ACCATGAGCATAAATGTGTTGGA 58.657 39.130 0.00 0.00 0.00 3.53
281 282 4.400251 CCATGAGCATAAATGTGTTGGAGT 59.600 41.667 0.00 0.00 0.00 3.85
283 284 4.650734 TGAGCATAAATGTGTTGGAGTCA 58.349 39.130 0.00 0.00 0.00 3.41
287 288 4.398988 GCATAAATGTGTTGGAGTCATGGA 59.601 41.667 0.00 0.00 0.00 3.41
288 289 5.677091 GCATAAATGTGTTGGAGTCATGGAC 60.677 44.000 0.00 0.00 0.00 4.02
289 290 3.507162 AATGTGTTGGAGTCATGGACA 57.493 42.857 0.00 0.00 34.60 4.02
290 291 3.507162 ATGTGTTGGAGTCATGGACAA 57.493 42.857 0.00 0.00 34.60 3.18
291 292 3.507162 TGTGTTGGAGTCATGGACAAT 57.493 42.857 0.00 0.00 34.60 2.71
294 295 3.820467 GTGTTGGAGTCATGGACAATGAA 59.180 43.478 0.00 0.00 46.90 2.57
297 298 4.371624 TGGAGTCATGGACAATGAAACT 57.628 40.909 0.00 0.00 46.90 2.66
298 299 4.326826 TGGAGTCATGGACAATGAAACTC 58.673 43.478 0.00 0.00 46.90 3.01
299 300 4.202451 TGGAGTCATGGACAATGAAACTCA 60.202 41.667 11.76 0.30 46.90 3.41
302 303 5.563592 AGTCATGGACAATGAAACTCATGA 58.436 37.500 0.00 0.00 46.90 3.07
305 306 5.878669 TCATGGACAATGAAACTCATGAGAG 59.121 40.000 29.27 4.94 42.49 3.20
307 308 5.485620 TGGACAATGAAACTCATGAGAGAG 58.514 41.667 29.27 12.72 44.98 3.20
308 309 5.246883 TGGACAATGAAACTCATGAGAGAGA 59.753 40.000 29.27 10.32 44.98 3.10
309 310 5.811613 GGACAATGAAACTCATGAGAGAGAG 59.188 44.000 29.27 13.67 44.98 3.20
310 311 5.732633 ACAATGAAACTCATGAGAGAGAGG 58.267 41.667 29.27 13.95 44.98 3.69
311 312 5.117584 CAATGAAACTCATGAGAGAGAGGG 58.882 45.833 29.27 9.55 44.98 4.30
312 313 3.102972 TGAAACTCATGAGAGAGAGGGG 58.897 50.000 29.27 0.11 44.98 4.79
313 314 1.494960 AACTCATGAGAGAGAGGGGC 58.505 55.000 29.27 0.00 44.98 5.80
314 315 0.337773 ACTCATGAGAGAGAGGGGCA 59.662 55.000 29.27 0.00 44.98 5.36
315 316 1.273495 ACTCATGAGAGAGAGGGGCAA 60.273 52.381 29.27 0.00 44.98 4.52
316 317 1.836166 CTCATGAGAGAGAGGGGCAAA 59.164 52.381 18.34 0.00 44.98 3.68
317 318 1.836166 TCATGAGAGAGAGGGGCAAAG 59.164 52.381 0.00 0.00 0.00 2.77
319 320 0.546267 TGAGAGAGAGGGGCAAAGCT 60.546 55.000 0.00 0.00 0.00 3.74
320 321 0.617935 GAGAGAGAGGGGCAAAGCTT 59.382 55.000 0.00 0.00 0.00 3.74
321 322 1.834263 GAGAGAGAGGGGCAAAGCTTA 59.166 52.381 0.00 0.00 0.00 3.09
322 323 2.237392 GAGAGAGAGGGGCAAAGCTTAA 59.763 50.000 0.00 0.00 0.00 1.85
323 324 2.238395 AGAGAGAGGGGCAAAGCTTAAG 59.762 50.000 0.00 0.00 0.00 1.85
326 327 3.013219 GAGAGGGGCAAAGCTTAAGAAG 58.987 50.000 6.67 0.00 0.00 2.85
327 328 2.095461 GAGGGGCAAAGCTTAAGAAGG 58.905 52.381 6.67 0.00 0.00 3.46
328 329 1.710809 AGGGGCAAAGCTTAAGAAGGA 59.289 47.619 6.67 0.00 0.00 3.36
329 330 2.095461 GGGGCAAAGCTTAAGAAGGAG 58.905 52.381 6.67 0.00 0.00 3.69
330 331 2.290960 GGGGCAAAGCTTAAGAAGGAGA 60.291 50.000 6.67 0.00 0.00 3.71
331 332 3.421844 GGGCAAAGCTTAAGAAGGAGAA 58.578 45.455 6.67 0.00 0.00 2.87
332 333 4.019858 GGGCAAAGCTTAAGAAGGAGAAT 58.980 43.478 6.67 0.00 0.00 2.40
333 334 4.464244 GGGCAAAGCTTAAGAAGGAGAATT 59.536 41.667 6.67 0.00 0.00 2.17
334 335 5.652452 GGGCAAAGCTTAAGAAGGAGAATTA 59.348 40.000 6.67 0.00 0.00 1.40
335 336 6.322456 GGGCAAAGCTTAAGAAGGAGAATTAT 59.678 38.462 6.67 0.00 0.00 1.28
336 337 7.421599 GGCAAAGCTTAAGAAGGAGAATTATC 58.578 38.462 6.67 0.00 0.00 1.75
337 338 7.067494 GGCAAAGCTTAAGAAGGAGAATTATCA 59.933 37.037 6.67 0.00 0.00 2.15
338 339 8.127954 GCAAAGCTTAAGAAGGAGAATTATCAG 58.872 37.037 6.67 0.00 0.00 2.90
339 340 9.171877 CAAAGCTTAAGAAGGAGAATTATCAGT 57.828 33.333 6.67 0.00 0.00 3.41
340 341 9.746457 AAAGCTTAAGAAGGAGAATTATCAGTT 57.254 29.630 6.67 0.00 0.00 3.16
341 342 8.729805 AGCTTAAGAAGGAGAATTATCAGTTG 57.270 34.615 6.67 0.00 0.00 3.16
342 343 7.772757 AGCTTAAGAAGGAGAATTATCAGTTGG 59.227 37.037 6.67 0.00 0.00 3.77
343 344 7.012799 GCTTAAGAAGGAGAATTATCAGTTGGG 59.987 40.741 6.67 0.00 0.00 4.12
345 346 4.228210 AGAAGGAGAATTATCAGTTGGGCA 59.772 41.667 1.97 0.00 0.00 5.36
346 347 4.591321 AGGAGAATTATCAGTTGGGCAA 57.409 40.909 1.97 0.00 0.00 4.52
347 348 5.134725 AGGAGAATTATCAGTTGGGCAAT 57.865 39.130 1.97 0.00 0.00 3.56
348 349 6.266131 AGGAGAATTATCAGTTGGGCAATA 57.734 37.500 1.97 0.00 0.00 1.90
349 350 6.856757 AGGAGAATTATCAGTTGGGCAATAT 58.143 36.000 1.97 0.00 0.00 1.28
350 351 6.718454 AGGAGAATTATCAGTTGGGCAATATG 59.282 38.462 1.97 0.00 0.00 1.78
351 352 6.491403 GGAGAATTATCAGTTGGGCAATATGT 59.509 38.462 1.97 0.00 0.00 2.29
352 353 7.665559 GGAGAATTATCAGTTGGGCAATATGTA 59.334 37.037 1.97 0.00 0.00 2.29
354 355 7.998383 AGAATTATCAGTTGGGCAATATGTACA 59.002 33.333 0.00 0.00 0.00 2.90
355 356 7.750229 ATTATCAGTTGGGCAATATGTACAG 57.250 36.000 0.33 0.00 0.00 2.74
356 357 3.278574 TCAGTTGGGCAATATGTACAGC 58.721 45.455 0.33 0.00 0.00 4.40
357 358 2.358898 CAGTTGGGCAATATGTACAGCC 59.641 50.000 14.00 14.00 46.28 4.85
364 365 5.009854 GGCAATATGTACAGCCAATTTGT 57.990 39.130 16.71 0.00 46.26 2.83
365 366 4.805192 GGCAATATGTACAGCCAATTTGTG 59.195 41.667 16.71 0.17 46.26 3.33
382 383 8.550710 CAATTTGTGGATAATGTGTCCAAATT 57.449 30.769 0.00 0.00 46.67 1.82
383 384 9.650539 CAATTTGTGGATAATGTGTCCAAATTA 57.349 29.630 0.00 0.00 46.67 1.40
389 390 9.301153 GTGGATAATGTGTCCAAATTATTTGAC 57.699 33.333 18.13 13.86 46.67 3.18
390 391 9.253832 TGGATAATGTGTCCAAATTATTTGACT 57.746 29.630 18.13 3.28 42.56 3.41
394 395 8.415950 AATGTGTCCAAATTATTTGACTACCA 57.584 30.769 18.13 12.37 43.26 3.25
395 396 7.825331 TGTGTCCAAATTATTTGACTACCAA 57.175 32.000 18.13 3.44 43.26 3.67
396 397 7.881142 TGTGTCCAAATTATTTGACTACCAAG 58.119 34.615 18.13 0.41 43.26 3.61
397 398 7.721842 TGTGTCCAAATTATTTGACTACCAAGA 59.278 33.333 18.13 2.67 43.26 3.02
398 399 8.739972 GTGTCCAAATTATTTGACTACCAAGAT 58.260 33.333 18.13 0.00 43.26 2.40
399 400 8.739039 TGTCCAAATTATTTGACTACCAAGATG 58.261 33.333 18.13 0.00 43.26 2.90
402 403 8.190784 CCAAATTATTTGACTACCAAGATGGTC 58.809 37.037 18.13 0.00 44.89 4.02
403 404 8.960591 CAAATTATTTGACTACCAAGATGGTCT 58.039 33.333 11.89 0.00 44.89 3.85
412 413 3.969287 CCAAGATGGTCTGAAGTCTCA 57.031 47.619 0.00 0.00 31.35 3.27
413 414 4.484537 CCAAGATGGTCTGAAGTCTCAT 57.515 45.455 0.00 0.00 31.35 2.90
415 416 4.190001 CAAGATGGTCTGAAGTCTCATGG 58.810 47.826 0.00 0.00 0.00 3.66
416 417 2.170187 AGATGGTCTGAAGTCTCATGGC 59.830 50.000 0.00 0.00 0.00 4.40
418 419 1.911357 TGGTCTGAAGTCTCATGGCAT 59.089 47.619 0.00 0.00 0.00 4.40
421 422 2.093288 GTCTGAAGTCTCATGGCATGGA 60.093 50.000 26.15 18.77 0.00 3.41
422 423 2.775960 TCTGAAGTCTCATGGCATGGAT 59.224 45.455 26.15 9.23 0.00 3.41
423 424 3.201487 TCTGAAGTCTCATGGCATGGATT 59.799 43.478 26.15 15.81 0.00 3.01
424 425 4.409901 TCTGAAGTCTCATGGCATGGATTA 59.590 41.667 26.15 7.02 0.00 1.75
426 427 5.508567 TGAAGTCTCATGGCATGGATTAAA 58.491 37.500 26.15 5.90 0.00 1.52
427 428 5.357878 TGAAGTCTCATGGCATGGATTAAAC 59.642 40.000 26.15 14.71 0.00 2.01
428 429 4.210331 AGTCTCATGGCATGGATTAAACC 58.790 43.478 26.15 9.84 0.00 3.27
429 430 3.953612 GTCTCATGGCATGGATTAAACCA 59.046 43.478 26.15 6.95 44.41 3.67
430 431 4.402155 GTCTCATGGCATGGATTAAACCAA 59.598 41.667 26.15 2.97 43.47 3.67
432 433 5.069383 TCTCATGGCATGGATTAAACCAATG 59.931 40.000 26.15 7.99 43.47 2.82
433 434 4.961099 TCATGGCATGGATTAAACCAATGA 59.039 37.500 26.15 10.09 43.47 2.57
434 435 5.069383 TCATGGCATGGATTAAACCAATGAG 59.931 40.000 26.15 1.21 43.47 2.90
435 436 3.705579 TGGCATGGATTAAACCAATGAGG 59.294 43.478 8.70 0.00 43.47 3.86
437 438 3.385755 GCATGGATTAAACCAATGAGGCT 59.614 43.478 8.70 0.00 43.47 4.58
438 439 4.584325 GCATGGATTAAACCAATGAGGCTA 59.416 41.667 8.70 0.00 43.47 3.93
439 440 5.244626 GCATGGATTAAACCAATGAGGCTAT 59.755 40.000 8.70 0.00 43.47 2.97
440 441 6.571150 GCATGGATTAAACCAATGAGGCTATC 60.571 42.308 8.70 0.00 43.47 2.08
441 442 6.012337 TGGATTAAACCAATGAGGCTATCA 57.988 37.500 1.25 0.00 43.14 2.15
454 455 6.731292 TGAGGCTATCATAGAACTTAAGCA 57.269 37.500 1.29 0.00 31.12 3.91
456 457 6.551227 TGAGGCTATCATAGAACTTAAGCAGA 59.449 38.462 1.29 0.00 31.12 4.26
458 459 7.796054 AGGCTATCATAGAACTTAAGCAGAAA 58.204 34.615 1.29 0.00 0.00 2.52
459 460 8.267894 AGGCTATCATAGAACTTAAGCAGAAAA 58.732 33.333 1.29 0.00 0.00 2.29
460 461 8.893727 GGCTATCATAGAACTTAAGCAGAAAAA 58.106 33.333 1.29 0.00 0.00 1.94
461 462 9.928236 GCTATCATAGAACTTAAGCAGAAAAAG 57.072 33.333 1.29 0.00 0.00 2.27
465 466 8.936864 TCATAGAACTTAAGCAGAAAAAGTAGC 58.063 33.333 1.29 0.00 33.24 3.58
466 467 8.721478 CATAGAACTTAAGCAGAAAAAGTAGCA 58.279 33.333 1.29 0.00 33.24 3.49
467 468 7.195839 AGAACTTAAGCAGAAAAAGTAGCAG 57.804 36.000 1.29 0.00 33.24 4.24
468 469 5.363979 ACTTAAGCAGAAAAAGTAGCAGC 57.636 39.130 1.29 0.00 31.84 5.25
469 470 5.066593 ACTTAAGCAGAAAAAGTAGCAGCT 58.933 37.500 1.29 0.00 31.84 4.24
470 471 5.532779 ACTTAAGCAGAAAAAGTAGCAGCTT 59.467 36.000 0.00 0.00 42.69 3.74
471 472 3.911661 AGCAGAAAAAGTAGCAGCTTG 57.088 42.857 0.00 0.00 0.00 4.01
472 473 3.480470 AGCAGAAAAAGTAGCAGCTTGA 58.520 40.909 0.00 0.00 0.00 3.02
473 474 3.501445 AGCAGAAAAAGTAGCAGCTTGAG 59.499 43.478 0.00 0.00 0.00 3.02
474 475 3.365767 GCAGAAAAAGTAGCAGCTTGAGG 60.366 47.826 0.00 0.00 0.00 3.86
475 476 4.067896 CAGAAAAAGTAGCAGCTTGAGGA 58.932 43.478 0.00 0.00 0.00 3.71
476 477 4.153835 CAGAAAAAGTAGCAGCTTGAGGAG 59.846 45.833 0.00 0.00 0.00 3.69
488 489 3.557228 CTTGAGGAGCAGGCTAAGATT 57.443 47.619 0.00 0.00 0.00 2.40
489 490 2.996249 TGAGGAGCAGGCTAAGATTG 57.004 50.000 0.00 0.00 0.00 2.67
490 491 2.470990 TGAGGAGCAGGCTAAGATTGA 58.529 47.619 0.00 0.00 0.00 2.57
491 492 2.433604 TGAGGAGCAGGCTAAGATTGAG 59.566 50.000 0.00 0.00 0.00 3.02
492 493 2.697751 GAGGAGCAGGCTAAGATTGAGA 59.302 50.000 0.00 0.00 0.00 3.27
493 494 3.316501 AGGAGCAGGCTAAGATTGAGAT 58.683 45.455 0.00 0.00 0.00 2.75
494 495 4.487804 AGGAGCAGGCTAAGATTGAGATA 58.512 43.478 0.00 0.00 0.00 1.98
495 496 4.283212 AGGAGCAGGCTAAGATTGAGATAC 59.717 45.833 0.00 0.00 0.00 2.24
497 498 5.212532 AGCAGGCTAAGATTGAGATACAG 57.787 43.478 0.00 0.00 0.00 2.74
498 499 4.898265 AGCAGGCTAAGATTGAGATACAGA 59.102 41.667 0.00 0.00 0.00 3.41
499 500 5.543405 AGCAGGCTAAGATTGAGATACAGAT 59.457 40.000 0.00 0.00 0.00 2.90
500 501 5.638657 GCAGGCTAAGATTGAGATACAGATG 59.361 44.000 0.00 0.00 0.00 2.90
501 502 6.164876 CAGGCTAAGATTGAGATACAGATGG 58.835 44.000 0.00 0.00 0.00 3.51
502 503 6.014755 CAGGCTAAGATTGAGATACAGATGGA 60.015 42.308 0.00 0.00 0.00 3.41
503 504 6.556495 AGGCTAAGATTGAGATACAGATGGAA 59.444 38.462 0.00 0.00 0.00 3.53
504 505 7.071698 AGGCTAAGATTGAGATACAGATGGAAA 59.928 37.037 0.00 0.00 0.00 3.13
505 506 7.716998 GGCTAAGATTGAGATACAGATGGAAAA 59.283 37.037 0.00 0.00 0.00 2.29
506 507 8.555361 GCTAAGATTGAGATACAGATGGAAAAC 58.445 37.037 0.00 0.00 0.00 2.43
507 508 9.829507 CTAAGATTGAGATACAGATGGAAAACT 57.170 33.333 0.00 0.00 0.00 2.66
508 509 8.503458 AAGATTGAGATACAGATGGAAAACTG 57.497 34.615 0.00 0.00 39.65 3.16
509 510 7.855375 AGATTGAGATACAGATGGAAAACTGA 58.145 34.615 0.00 0.00 37.54 3.41
511 512 7.912056 TTGAGATACAGATGGAAAACTGAAG 57.088 36.000 0.00 0.00 37.54 3.02
512 513 5.877012 TGAGATACAGATGGAAAACTGAAGC 59.123 40.000 0.00 0.00 37.54 3.86
513 514 6.059787 AGATACAGATGGAAAACTGAAGCT 57.940 37.500 0.00 0.00 37.54 3.74
517 518 4.889409 ACAGATGGAAAACTGAAGCTGAAA 59.111 37.500 0.00 0.00 37.54 2.69
518 519 5.360714 ACAGATGGAAAACTGAAGCTGAAAA 59.639 36.000 0.00 0.00 37.54 2.29
519 520 6.127366 ACAGATGGAAAACTGAAGCTGAAAAA 60.127 34.615 0.00 0.00 37.54 1.94
520 521 6.927381 CAGATGGAAAACTGAAGCTGAAAAAT 59.073 34.615 0.00 0.00 36.38 1.82
523 524 6.275335 TGGAAAACTGAAGCTGAAAAATGAG 58.725 36.000 0.00 0.00 0.00 2.90
524 525 5.176406 GGAAAACTGAAGCTGAAAAATGAGC 59.824 40.000 0.00 0.00 35.28 4.26
525 526 4.924305 AACTGAAGCTGAAAAATGAGCA 57.076 36.364 0.00 0.00 37.70 4.26
527 528 6.579666 AACTGAAGCTGAAAAATGAGCATA 57.420 33.333 0.00 0.00 37.70 3.14
529 530 5.125097 ACTGAAGCTGAAAAATGAGCATAGG 59.875 40.000 0.00 0.00 37.70 2.57
530 531 5.012239 TGAAGCTGAAAAATGAGCATAGGT 58.988 37.500 0.00 0.00 37.70 3.08
531 532 4.978083 AGCTGAAAAATGAGCATAGGTG 57.022 40.909 0.00 0.00 37.70 4.00
549 550 3.940723 GCATCCTGCAGATTCAAGC 57.059 52.632 17.39 6.54 44.26 4.01
551 552 1.065701 GCATCCTGCAGATTCAAGCTG 59.934 52.381 17.39 0.00 44.26 4.24
553 554 2.105006 TCCTGCAGATTCAAGCTGAC 57.895 50.000 17.39 0.00 35.39 3.51
554 555 1.348696 TCCTGCAGATTCAAGCTGACA 59.651 47.619 17.39 3.26 35.39 3.58
555 556 2.026542 TCCTGCAGATTCAAGCTGACAT 60.027 45.455 17.39 0.00 35.39 3.06
557 558 3.007635 CTGCAGATTCAAGCTGACATCA 58.992 45.455 8.42 0.00 35.39 3.07
558 559 3.617284 TGCAGATTCAAGCTGACATCAT 58.383 40.909 6.90 0.00 35.39 2.45
559 560 3.626217 TGCAGATTCAAGCTGACATCATC 59.374 43.478 6.90 0.00 35.39 2.92
561 562 4.196971 CAGATTCAAGCTGACATCATCCA 58.803 43.478 0.00 0.00 35.39 3.41
562 563 4.035324 CAGATTCAAGCTGACATCATCCAC 59.965 45.833 0.00 0.00 35.39 4.02
564 565 3.421919 TCAAGCTGACATCATCCACAA 57.578 42.857 0.00 0.00 0.00 3.33
566 567 2.815503 CAAGCTGACATCATCCACAACA 59.184 45.455 0.00 0.00 0.00 3.33
567 568 2.430465 AGCTGACATCATCCACAACAC 58.570 47.619 0.00 0.00 0.00 3.32
571 572 3.140623 TGACATCATCCACAACACACTG 58.859 45.455 0.00 0.00 0.00 3.66
572 573 3.181456 TGACATCATCCACAACACACTGA 60.181 43.478 0.00 0.00 0.00 3.41
573 574 3.814842 GACATCATCCACAACACACTGAA 59.185 43.478 0.00 0.00 0.00 3.02
577 578 3.118445 TCATCCACAACACACTGAAGACA 60.118 43.478 0.00 0.00 0.00 3.41
578 579 3.342377 TCCACAACACACTGAAGACAA 57.658 42.857 0.00 0.00 0.00 3.18
579 580 3.884895 TCCACAACACACTGAAGACAAT 58.115 40.909 0.00 0.00 0.00 2.71
580 581 3.627123 TCCACAACACACTGAAGACAATG 59.373 43.478 0.00 0.00 0.00 2.82
581 582 3.627123 CCACAACACACTGAAGACAATGA 59.373 43.478 0.00 0.00 0.00 2.57
582 583 4.096231 CCACAACACACTGAAGACAATGAA 59.904 41.667 0.00 0.00 0.00 2.57
583 584 5.268544 CACAACACACTGAAGACAATGAAG 58.731 41.667 0.00 0.00 0.00 3.02
584 585 4.336433 ACAACACACTGAAGACAATGAAGG 59.664 41.667 0.00 0.00 0.00 3.46
585 586 4.422073 ACACACTGAAGACAATGAAGGA 57.578 40.909 0.00 0.00 0.00 3.36
586 587 4.384056 ACACACTGAAGACAATGAAGGAG 58.616 43.478 0.00 0.00 0.00 3.69
587 588 4.101585 ACACACTGAAGACAATGAAGGAGA 59.898 41.667 0.00 0.00 0.00 3.71
589 590 6.014242 ACACACTGAAGACAATGAAGGAGATA 60.014 38.462 0.00 0.00 0.00 1.98
590 591 6.534436 CACACTGAAGACAATGAAGGAGATAG 59.466 42.308 0.00 0.00 0.00 2.08
592 593 6.979817 CACTGAAGACAATGAAGGAGATAGAG 59.020 42.308 0.00 0.00 0.00 2.43
595 596 7.724287 TGAAGACAATGAAGGAGATAGAGATG 58.276 38.462 0.00 0.00 0.00 2.90
596 597 6.669125 AGACAATGAAGGAGATAGAGATGG 57.331 41.667 0.00 0.00 0.00 3.51
597 598 5.543405 AGACAATGAAGGAGATAGAGATGGG 59.457 44.000 0.00 0.00 0.00 4.00
598 599 5.222870 ACAATGAAGGAGATAGAGATGGGT 58.777 41.667 0.00 0.00 0.00 4.51
600 601 6.496565 ACAATGAAGGAGATAGAGATGGGTAG 59.503 42.308 0.00 0.00 0.00 3.18
601 602 5.932027 TGAAGGAGATAGAGATGGGTAGA 57.068 43.478 0.00 0.00 0.00 2.59
602 603 5.886609 TGAAGGAGATAGAGATGGGTAGAG 58.113 45.833 0.00 0.00 0.00 2.43
603 604 4.946160 AGGAGATAGAGATGGGTAGAGG 57.054 50.000 0.00 0.00 0.00 3.69
604 605 3.011257 AGGAGATAGAGATGGGTAGAGGC 59.989 52.174 0.00 0.00 0.00 4.70
606 607 3.000360 AGATAGAGATGGGTAGAGGCCT 59.000 50.000 3.86 3.86 0.00 5.19
607 608 2.685106 TAGAGATGGGTAGAGGCCTG 57.315 55.000 12.00 0.00 0.00 4.85
608 609 0.762461 AGAGATGGGTAGAGGCCTGC 60.762 60.000 12.00 1.09 0.00 4.85
610 611 0.327000 AGATGGGTAGAGGCCTGCTT 60.327 55.000 12.00 0.00 0.00 3.91
614 615 1.559682 TGGGTAGAGGCCTGCTTAAAG 59.440 52.381 12.00 0.00 0.00 1.85
615 616 1.838077 GGGTAGAGGCCTGCTTAAAGA 59.162 52.381 12.00 0.00 0.00 2.52
616 617 2.420269 GGGTAGAGGCCTGCTTAAAGAC 60.420 54.545 12.00 1.81 0.00 3.01
618 619 3.307480 GGTAGAGGCCTGCTTAAAGACAA 60.307 47.826 12.00 0.00 0.00 3.18
619 620 3.508845 AGAGGCCTGCTTAAAGACAAA 57.491 42.857 12.00 0.00 0.00 2.83
622 623 4.279420 AGAGGCCTGCTTAAAGACAAAAAG 59.721 41.667 12.00 0.00 0.00 2.27
624 625 3.320826 GGCCTGCTTAAAGACAAAAAGGA 59.679 43.478 0.00 0.00 0.00 3.36
625 626 4.550422 GCCTGCTTAAAGACAAAAAGGAG 58.450 43.478 0.00 0.00 38.13 3.69
626 627 4.278419 GCCTGCTTAAAGACAAAAAGGAGA 59.722 41.667 4.64 0.00 40.06 3.71
628 629 5.048434 CCTGCTTAAAGACAAAAAGGAGAGG 60.048 44.000 4.64 0.00 40.06 3.69
629 630 5.445964 TGCTTAAAGACAAAAAGGAGAGGT 58.554 37.500 0.00 0.00 0.00 3.85
630 631 5.531287 TGCTTAAAGACAAAAAGGAGAGGTC 59.469 40.000 0.00 0.00 0.00 3.85
631 632 5.334182 GCTTAAAGACAAAAAGGAGAGGTCG 60.334 44.000 0.00 0.00 33.84 4.79
632 633 4.417426 AAAGACAAAAAGGAGAGGTCGA 57.583 40.909 0.00 0.00 33.84 4.20
633 634 3.388345 AGACAAAAAGGAGAGGTCGAC 57.612 47.619 7.13 7.13 33.84 4.20
634 635 2.698797 AGACAAAAAGGAGAGGTCGACA 59.301 45.455 18.91 0.00 33.84 4.35
635 636 3.060602 GACAAAAAGGAGAGGTCGACAG 58.939 50.000 18.91 0.00 0.00 3.51
637 638 2.802816 CAAAAAGGAGAGGTCGACAGTG 59.197 50.000 18.91 0.00 0.00 3.66
638 639 0.318762 AAAGGAGAGGTCGACAGTGC 59.681 55.000 18.91 6.17 0.00 4.40
640 641 1.214062 GGAGAGGTCGACAGTGCTG 59.786 63.158 18.91 0.00 0.00 4.41
641 642 1.214062 GAGAGGTCGACAGTGCTGG 59.786 63.158 18.91 0.00 34.19 4.85
642 643 2.433318 GAGGTCGACAGTGCTGGC 60.433 66.667 18.91 0.00 34.56 4.85
644 645 2.280797 GGTCGACAGTGCTGGCAA 60.281 61.111 18.91 0.00 38.95 4.52
645 646 2.607892 GGTCGACAGTGCTGGCAAC 61.608 63.158 18.91 0.00 38.95 4.17
649 650 1.835483 CGACAGTGCTGGCAACACTC 61.835 60.000 20.03 9.95 45.06 3.51
650 651 0.815213 GACAGTGCTGGCAACACTCA 60.815 55.000 20.03 0.00 45.06 3.41
652 653 0.740149 CAGTGCTGGCAACACTCAAA 59.260 50.000 20.03 0.00 45.06 2.69
653 654 1.134753 CAGTGCTGGCAACACTCAAAA 59.865 47.619 20.03 0.00 45.06 2.44
654 655 1.824230 AGTGCTGGCAACACTCAAAAA 59.176 42.857 17.40 0.00 45.06 1.94
655 656 2.431782 AGTGCTGGCAACACTCAAAAAT 59.568 40.909 17.40 0.00 45.06 1.82
656 657 2.796593 GTGCTGGCAACACTCAAAAATC 59.203 45.455 13.56 0.00 46.17 2.17
659 660 3.645884 CTGGCAACACTCAAAAATCCAG 58.354 45.455 0.00 0.00 46.17 3.86
660 661 3.030291 TGGCAACACTCAAAAATCCAGT 58.970 40.909 0.00 0.00 46.17 4.00
662 663 3.803778 GGCAACACTCAAAAATCCAGTTG 59.196 43.478 0.00 0.00 38.24 3.16
665 666 2.034558 ACACTCAAAAATCCAGTTGCCG 59.965 45.455 0.00 0.00 0.00 5.69
666 667 1.000274 ACTCAAAAATCCAGTTGCCGC 60.000 47.619 0.00 0.00 0.00 6.53
669 670 0.240945 AAAAATCCAGTTGCCGCTCG 59.759 50.000 0.00 0.00 0.00 5.03
670 671 1.586154 AAAATCCAGTTGCCGCTCGG 61.586 55.000 3.56 3.56 38.57 4.63
681 682 4.253257 CGCTCGGCTACCTCGACC 62.253 72.222 0.00 0.00 32.86 4.79
682 683 3.902086 GCTCGGCTACCTCGACCC 61.902 72.222 0.00 0.00 32.86 4.46
683 684 3.217743 CTCGGCTACCTCGACCCC 61.218 72.222 0.00 0.00 32.86 4.95
685 686 3.072468 CGGCTACCTCGACCCCAA 61.072 66.667 0.00 0.00 0.00 4.12
686 687 2.901042 GGCTACCTCGACCCCAAG 59.099 66.667 0.00 0.00 0.00 3.61
687 688 1.988406 GGCTACCTCGACCCCAAGT 60.988 63.158 0.00 0.00 0.00 3.16
688 689 1.551019 GGCTACCTCGACCCCAAGTT 61.551 60.000 0.00 0.00 0.00 2.66
689 690 0.323957 GCTACCTCGACCCCAAGTTT 59.676 55.000 0.00 0.00 0.00 2.66
692 693 3.557686 GCTACCTCGACCCCAAGTTTAAA 60.558 47.826 0.00 0.00 0.00 1.52
693 694 3.136009 ACCTCGACCCCAAGTTTAAAG 57.864 47.619 0.00 0.00 0.00 1.85
694 695 2.440627 ACCTCGACCCCAAGTTTAAAGT 59.559 45.455 0.00 0.00 0.00 2.66
695 696 3.117776 ACCTCGACCCCAAGTTTAAAGTT 60.118 43.478 2.28 2.28 0.00 2.66
696 697 3.887110 CCTCGACCCCAAGTTTAAAGTTT 59.113 43.478 5.51 0.00 0.00 2.66
698 699 5.532032 CCTCGACCCCAAGTTTAAAGTTTTA 59.468 40.000 5.51 0.00 0.00 1.52
699 700 6.293790 CCTCGACCCCAAGTTTAAAGTTTTAG 60.294 42.308 5.51 0.77 0.00 1.85
700 701 6.121590 TCGACCCCAAGTTTAAAGTTTTAGT 58.878 36.000 5.51 3.75 0.00 2.24
702 703 7.938490 TCGACCCCAAGTTTAAAGTTTTAGTAT 59.062 33.333 5.51 0.00 0.00 2.12
703 704 8.570488 CGACCCCAAGTTTAAAGTTTTAGTATT 58.430 33.333 5.51 0.00 0.00 1.89
704 705 9.687210 GACCCCAAGTTTAAAGTTTTAGTATTG 57.313 33.333 5.51 0.00 0.00 1.90
706 707 9.687210 CCCCAAGTTTAAAGTTTTAGTATTGTC 57.313 33.333 5.51 0.00 0.00 3.18
808 809 8.308207 GTTTCAAAGTTGGCCCAATAAATACTA 58.692 33.333 0.00 0.00 0.00 1.82
809 810 7.639113 TCAAAGTTGGCCCAATAAATACTAG 57.361 36.000 0.00 0.00 0.00 2.57
811 812 8.330247 TCAAAGTTGGCCCAATAAATACTAGTA 58.670 33.333 4.77 4.77 0.00 1.82
813 814 6.838382 AGTTGGCCCAATAAATACTAGTAGG 58.162 40.000 8.85 3.44 0.00 3.18
864 875 6.600822 AGTGTCAATTTCTATCCATTGTCCAG 59.399 38.462 0.00 0.00 32.96 3.86
963 974 1.137594 TCCTCCCCCAAATCACCGTT 61.138 55.000 0.00 0.00 0.00 4.44
966 979 0.326927 TCCCCCAAATCACCGTTCTC 59.673 55.000 0.00 0.00 0.00 2.87
991 1004 3.276857 CCAAATCACATCCCACTCTCAG 58.723 50.000 0.00 0.00 0.00 3.35
992 1005 3.054875 CCAAATCACATCCCACTCTCAGA 60.055 47.826 0.00 0.00 0.00 3.27
993 1006 4.384978 CCAAATCACATCCCACTCTCAGAT 60.385 45.833 0.00 0.00 0.00 2.90
995 1008 3.395054 TCACATCCCACTCTCAGATCT 57.605 47.619 0.00 0.00 0.00 2.75
996 1009 3.295093 TCACATCCCACTCTCAGATCTC 58.705 50.000 0.00 0.00 0.00 2.75
997 1010 2.034432 CACATCCCACTCTCAGATCTCG 59.966 54.545 0.00 0.00 0.00 4.04
1782 5840 0.818040 GCTTCGCCGGGGATTATGTT 60.818 55.000 23.22 0.00 0.00 2.71
1839 5897 3.872696 TGATGATTATGTTGTCGCCACT 58.127 40.909 0.00 0.00 0.00 4.00
1887 5945 0.251742 TGCAGGCTGCTTTTGGGTAT 60.252 50.000 36.50 0.00 45.31 2.73
2058 6116 3.187700 GGTTGATAACGACATCGAGCTT 58.812 45.455 8.54 0.00 43.02 3.74
2125 6183 0.107508 GCAGCAGCCATAGAGTTGGA 60.108 55.000 0.00 0.00 39.25 3.53
2136 6194 7.284034 CAGCCATAGAGTTGGAATCAATAGTTT 59.716 37.037 0.00 0.00 39.25 2.66
2138 6196 7.469181 GCCATAGAGTTGGAATCAATAGTTTGG 60.469 40.741 0.00 0.00 39.25 3.28
2167 6225 2.247358 GAGCTTGGTTTGGATTTCCCA 58.753 47.619 0.00 0.00 44.93 4.37
2170 6228 1.623311 CTTGGTTTGGATTTCCCACCC 59.377 52.381 10.95 0.00 46.62 4.61
2172 6230 1.221781 TGGTTTGGATTTCCCACCCTT 59.778 47.619 10.95 0.00 46.62 3.95
2173 6231 2.451273 TGGTTTGGATTTCCCACCCTTA 59.549 45.455 10.95 0.00 46.62 2.69
2174 6232 3.096852 GGTTTGGATTTCCCACCCTTAG 58.903 50.000 4.39 0.00 46.62 2.18
2213 6271 1.741706 CATTGCAGTAGAGGTTGGCTG 59.258 52.381 0.00 0.00 0.00 4.85
2271 6329 7.523415 AGGAGGTTTAAAGTTTGATCCTACAA 58.477 34.615 17.67 0.00 34.21 2.41
2272 6330 7.665974 AGGAGGTTTAAAGTTTGATCCTACAAG 59.334 37.037 17.67 0.00 34.21 3.16
2324 6382 8.618677 GTGCTTTTCTCATATGAATGAATCAGA 58.381 33.333 6.90 0.00 41.57 3.27
2396 6829 7.421530 TGATAGCAAACTTGTCTTTCTGTAC 57.578 36.000 0.00 0.00 0.00 2.90
2403 6836 4.442706 ACTTGTCTTTCTGTACTGTGTGG 58.557 43.478 0.00 0.00 0.00 4.17
2548 6981 7.275888 TGAAATGATGAATATGTTAGCCCAC 57.724 36.000 0.00 0.00 0.00 4.61
2554 6987 6.265196 TGATGAATATGTTAGCCCACATTTCC 59.735 38.462 3.80 0.00 38.40 3.13
2556 6989 1.762708 ATGTTAGCCCACATTTCCCG 58.237 50.000 0.00 0.00 33.29 5.14
2847 7291 8.055181 AGACCCTACATGATTCACACAAAATAT 58.945 33.333 0.00 0.00 0.00 1.28
3016 7460 0.037326 TGGGTGCTGAGACAACGATC 60.037 55.000 0.00 0.00 0.00 3.69
3019 7463 2.417719 GGTGCTGAGACAACGATCTTT 58.582 47.619 0.00 0.00 0.00 2.52
3045 7489 2.386661 TTCACTTCAGGCGATCCTTC 57.613 50.000 0.00 0.00 41.93 3.46
3093 7537 4.032960 TGTAACCTGCACCATGAATTCT 57.967 40.909 7.05 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.221041 ACTTAGAGACAAGCAGTAAGGGAC 59.779 45.833 0.00 0.00 0.00 4.46
13 14 4.417437 ACTTAGAGACAAGCAGTAAGGGA 58.583 43.478 0.00 0.00 0.00 4.20
15 16 6.100668 GGTAACTTAGAGACAAGCAGTAAGG 58.899 44.000 0.00 0.00 0.00 2.69
17 18 5.778750 AGGGTAACTTAGAGACAAGCAGTAA 59.221 40.000 0.00 0.00 0.00 2.24
19 20 4.161102 AGGGTAACTTAGAGACAAGCAGT 58.839 43.478 0.00 0.00 0.00 4.40
22 23 7.385478 GCATAATAGGGTAACTTAGAGACAAGC 59.615 40.741 0.00 0.00 0.00 4.01
23 24 8.421784 TGCATAATAGGGTAACTTAGAGACAAG 58.578 37.037 0.00 0.00 0.00 3.16
24 25 8.313944 TGCATAATAGGGTAACTTAGAGACAA 57.686 34.615 0.00 0.00 0.00 3.18
25 26 7.907841 TGCATAATAGGGTAACTTAGAGACA 57.092 36.000 0.00 0.00 0.00 3.41
27 28 8.548880 ACTTGCATAATAGGGTAACTTAGAGA 57.451 34.615 0.00 0.00 0.00 3.10
29 30 8.202137 GTGACTTGCATAATAGGGTAACTTAGA 58.798 37.037 0.00 0.00 0.00 2.10
30 31 8.204836 AGTGACTTGCATAATAGGGTAACTTAG 58.795 37.037 0.00 0.00 0.00 2.18
31 32 7.985184 CAGTGACTTGCATAATAGGGTAACTTA 59.015 37.037 0.00 0.00 0.00 2.24
32 33 6.823689 CAGTGACTTGCATAATAGGGTAACTT 59.176 38.462 0.00 0.00 0.00 2.66
33 34 6.156256 TCAGTGACTTGCATAATAGGGTAACT 59.844 38.462 0.00 0.00 0.00 2.24
34 35 6.346096 TCAGTGACTTGCATAATAGGGTAAC 58.654 40.000 0.00 0.00 0.00 2.50
35 36 6.553953 TCAGTGACTTGCATAATAGGGTAA 57.446 37.500 0.00 0.00 0.00 2.85
37 38 5.435686 TTCAGTGACTTGCATAATAGGGT 57.564 39.130 0.00 0.00 0.00 4.34
38 39 6.057533 TCATTCAGTGACTTGCATAATAGGG 58.942 40.000 0.00 0.00 0.00 3.53
41 42 8.400186 CACAATCATTCAGTGACTTGCATAATA 58.600 33.333 0.00 0.00 40.28 0.98
42 43 7.094075 ACACAATCATTCAGTGACTTGCATAAT 60.094 33.333 0.00 0.00 40.28 1.28
43 44 6.207221 ACACAATCATTCAGTGACTTGCATAA 59.793 34.615 0.00 0.00 40.28 1.90
44 45 5.706833 ACACAATCATTCAGTGACTTGCATA 59.293 36.000 0.00 0.00 40.28 3.14
46 47 3.884693 ACACAATCATTCAGTGACTTGCA 59.115 39.130 0.00 0.00 40.28 4.08
47 48 4.214971 AGACACAATCATTCAGTGACTTGC 59.785 41.667 0.00 0.00 40.28 4.01
49 50 7.389232 TCATAGACACAATCATTCAGTGACTT 58.611 34.615 0.00 0.00 40.28 3.01
51 52 7.783090 ATCATAGACACAATCATTCAGTGAC 57.217 36.000 0.00 0.00 40.28 3.67
52 53 9.538508 CTTATCATAGACACAATCATTCAGTGA 57.461 33.333 0.00 0.00 42.06 3.41
64 65 9.301897 ACACTGCTATATCTTATCATAGACACA 57.698 33.333 0.00 0.00 0.00 3.72
72 73 9.264719 CATTGACAACACTGCTATATCTTATCA 57.735 33.333 0.00 0.00 0.00 2.15
73 74 9.265901 ACATTGACAACACTGCTATATCTTATC 57.734 33.333 0.00 0.00 31.27 1.75
74 75 9.049523 CACATTGACAACACTGCTATATCTTAT 57.950 33.333 0.00 0.00 31.27 1.73
75 76 7.495606 CCACATTGACAACACTGCTATATCTTA 59.504 37.037 0.00 0.00 31.27 2.10
76 77 6.317140 CCACATTGACAACACTGCTATATCTT 59.683 38.462 0.00 0.00 31.27 2.40
77 78 5.819379 CCACATTGACAACACTGCTATATCT 59.181 40.000 0.00 0.00 31.27 1.98
78 79 5.586243 ACCACATTGACAACACTGCTATATC 59.414 40.000 0.00 0.00 31.27 1.63
79 80 5.355071 CACCACATTGACAACACTGCTATAT 59.645 40.000 0.00 0.00 31.27 0.86
80 81 4.694982 CACCACATTGACAACACTGCTATA 59.305 41.667 0.00 0.00 31.27 1.31
81 82 3.503363 CACCACATTGACAACACTGCTAT 59.497 43.478 0.00 0.00 31.27 2.97
82 83 2.877786 CACCACATTGACAACACTGCTA 59.122 45.455 0.00 0.00 31.27 3.49
83 84 1.677576 CACCACATTGACAACACTGCT 59.322 47.619 0.00 0.00 31.27 4.24
84 85 1.269206 CCACCACATTGACAACACTGC 60.269 52.381 0.00 0.00 31.27 4.40
86 87 2.435372 ACCACCACATTGACAACACT 57.565 45.000 0.00 0.00 0.00 3.55
87 88 3.518634 AAACCACCACATTGACAACAC 57.481 42.857 0.00 0.00 0.00 3.32
88 89 4.274147 ACTAAACCACCACATTGACAACA 58.726 39.130 0.00 0.00 0.00 3.33
90 91 6.773200 TGATAACTAAACCACCACATTGACAA 59.227 34.615 0.00 0.00 0.00 3.18
91 92 6.299922 TGATAACTAAACCACCACATTGACA 58.700 36.000 0.00 0.00 0.00 3.58
95 96 9.793259 CCTATATGATAACTAAACCACCACATT 57.207 33.333 0.00 0.00 0.00 2.71
96 97 8.945193 ACCTATATGATAACTAAACCACCACAT 58.055 33.333 0.00 0.00 0.00 3.21
97 98 8.208224 CACCTATATGATAACTAAACCACCACA 58.792 37.037 0.00 0.00 0.00 4.17
99 100 8.326765 ACACCTATATGATAACTAAACCACCA 57.673 34.615 0.00 0.00 0.00 4.17
100 101 9.052759 CAACACCTATATGATAACTAAACCACC 57.947 37.037 0.00 0.00 0.00 4.61
119 120 9.823647 CACACTTAATCTAGATATTCAACACCT 57.176 33.333 5.46 0.00 0.00 4.00
144 145 9.853555 CCTGCAAAGTCAAAATATAATTACACA 57.146 29.630 0.00 0.00 0.00 3.72
146 147 9.030452 ACCCTGCAAAGTCAAAATATAATTACA 57.970 29.630 0.00 0.00 0.00 2.41
147 148 9.301153 CACCCTGCAAAGTCAAAATATAATTAC 57.699 33.333 0.00 0.00 0.00 1.89
148 149 8.474025 CCACCCTGCAAAGTCAAAATATAATTA 58.526 33.333 0.00 0.00 0.00 1.40
149 150 7.038373 ACCACCCTGCAAAGTCAAAATATAATT 60.038 33.333 0.00 0.00 0.00 1.40
150 151 6.440328 ACCACCCTGCAAAGTCAAAATATAAT 59.560 34.615 0.00 0.00 0.00 1.28
151 152 5.777732 ACCACCCTGCAAAGTCAAAATATAA 59.222 36.000 0.00 0.00 0.00 0.98
152 153 5.184864 CACCACCCTGCAAAGTCAAAATATA 59.815 40.000 0.00 0.00 0.00 0.86
153 154 4.021192 CACCACCCTGCAAAGTCAAAATAT 60.021 41.667 0.00 0.00 0.00 1.28
155 156 2.102925 CACCACCCTGCAAAGTCAAAAT 59.897 45.455 0.00 0.00 0.00 1.82
156 157 1.480137 CACCACCCTGCAAAGTCAAAA 59.520 47.619 0.00 0.00 0.00 2.44
158 159 0.033601 ACACCACCCTGCAAAGTCAA 60.034 50.000 0.00 0.00 0.00 3.18
159 160 0.033601 AACACCACCCTGCAAAGTCA 60.034 50.000 0.00 0.00 0.00 3.41
160 161 1.975660 TAACACCACCCTGCAAAGTC 58.024 50.000 0.00 0.00 0.00 3.01
161 162 2.028876 GTTAACACCACCCTGCAAAGT 58.971 47.619 0.00 0.00 0.00 2.66
163 164 2.028130 CAGTTAACACCACCCTGCAAA 58.972 47.619 8.61 0.00 0.00 3.68
165 166 0.548989 ACAGTTAACACCACCCTGCA 59.451 50.000 8.61 0.00 0.00 4.41
167 168 0.951558 GCACAGTTAACACCACCCTG 59.048 55.000 8.61 0.00 0.00 4.45
168 169 0.534203 CGCACAGTTAACACCACCCT 60.534 55.000 8.61 0.00 0.00 4.34
169 170 1.512156 CCGCACAGTTAACACCACCC 61.512 60.000 8.61 0.00 0.00 4.61
171 172 1.018910 AACCGCACAGTTAACACCAC 58.981 50.000 8.61 0.00 0.00 4.16
172 173 1.018148 CAACCGCACAGTTAACACCA 58.982 50.000 8.61 0.00 0.00 4.17
173 174 1.018910 ACAACCGCACAGTTAACACC 58.981 50.000 8.61 0.00 0.00 4.16
175 176 0.378962 GCACAACCGCACAGTTAACA 59.621 50.000 8.61 0.00 0.00 2.41
176 177 0.378962 TGCACAACCGCACAGTTAAC 59.621 50.000 0.00 0.00 36.86 2.01
177 178 0.660488 CTGCACAACCGCACAGTTAA 59.340 50.000 0.00 0.00 36.86 2.01
179 180 1.748879 ACTGCACAACCGCACAGTT 60.749 52.632 0.00 0.00 40.35 3.16
180 181 2.124736 ACTGCACAACCGCACAGT 60.125 55.556 0.00 0.00 36.86 3.55
181 182 2.328989 CACTGCACAACCGCACAG 59.671 61.111 0.00 0.00 36.86 3.66
182 183 3.208383 CCACTGCACAACCGCACA 61.208 61.111 0.00 0.00 36.86 4.57
184 185 4.497984 ACCCACTGCACAACCGCA 62.498 61.111 0.00 0.00 40.32 5.69
185 186 3.964875 CACCCACTGCACAACCGC 61.965 66.667 0.00 0.00 0.00 5.68
186 187 3.286751 CCACCCACTGCACAACCG 61.287 66.667 0.00 0.00 0.00 4.44
188 189 1.959085 CATCCACCCACTGCACAAC 59.041 57.895 0.00 0.00 0.00 3.32
189 190 1.902918 GCATCCACCCACTGCACAA 60.903 57.895 0.00 0.00 35.96 3.33
190 191 2.282391 GCATCCACCCACTGCACA 60.282 61.111 0.00 0.00 35.96 4.57
191 192 3.064324 GGCATCCACCCACTGCAC 61.064 66.667 0.00 0.00 37.64 4.57
206 207 2.886359 GCAGTATGTCAAGCCAAGGGC 61.886 57.143 0.00 0.00 44.66 5.19
208 209 1.825090 TGCAGTATGTCAAGCCAAGG 58.175 50.000 0.00 0.00 39.31 3.61
210 211 3.636300 ACTTTTGCAGTATGTCAAGCCAA 59.364 39.130 0.00 0.00 39.31 4.52
211 212 3.004629 CACTTTTGCAGTATGTCAAGCCA 59.995 43.478 0.00 0.00 39.31 4.75
226 227 2.887152 AGAGCTTGGTTAGGCACTTTTG 59.113 45.455 0.00 0.00 41.75 2.44
227 228 2.887152 CAGAGCTTGGTTAGGCACTTTT 59.113 45.455 0.00 0.00 41.75 2.27
228 229 2.106511 TCAGAGCTTGGTTAGGCACTTT 59.893 45.455 0.00 0.00 41.75 2.66
230 231 1.277557 CTCAGAGCTTGGTTAGGCACT 59.722 52.381 0.00 0.00 46.37 4.40
231 232 1.276421 TCTCAGAGCTTGGTTAGGCAC 59.724 52.381 0.00 0.00 0.00 5.01
232 233 1.644509 TCTCAGAGCTTGGTTAGGCA 58.355 50.000 0.00 0.00 0.00 4.75
233 234 2.998316 ATCTCAGAGCTTGGTTAGGC 57.002 50.000 0.00 0.00 0.00 3.93
234 235 3.381908 ACGTATCTCAGAGCTTGGTTAGG 59.618 47.826 0.00 0.00 0.00 2.69
235 236 4.640789 ACGTATCTCAGAGCTTGGTTAG 57.359 45.455 0.00 0.00 0.00 2.34
236 237 4.337555 GGTACGTATCTCAGAGCTTGGTTA 59.662 45.833 0.00 0.00 0.00 2.85
237 238 3.130693 GGTACGTATCTCAGAGCTTGGTT 59.869 47.826 0.00 0.00 0.00 3.67
238 239 2.688958 GGTACGTATCTCAGAGCTTGGT 59.311 50.000 0.00 0.00 0.00 3.67
240 241 4.036852 TCATGGTACGTATCTCAGAGCTTG 59.963 45.833 7.47 0.00 0.00 4.01
241 242 4.207955 TCATGGTACGTATCTCAGAGCTT 58.792 43.478 7.47 0.00 0.00 3.74
242 243 3.818210 CTCATGGTACGTATCTCAGAGCT 59.182 47.826 7.47 0.00 0.00 4.09
243 244 3.610585 GCTCATGGTACGTATCTCAGAGC 60.611 52.174 22.36 22.36 39.09 4.09
244 245 3.565902 TGCTCATGGTACGTATCTCAGAG 59.434 47.826 7.47 11.79 0.00 3.35
245 246 3.551846 TGCTCATGGTACGTATCTCAGA 58.448 45.455 7.47 1.76 0.00 3.27
246 247 3.990318 TGCTCATGGTACGTATCTCAG 57.010 47.619 7.47 1.53 0.00 3.35
247 248 6.399639 TTTATGCTCATGGTACGTATCTCA 57.600 37.500 7.47 3.25 0.00 3.27
250 251 6.423905 ACACATTTATGCTCATGGTACGTATC 59.576 38.462 0.00 0.00 0.00 2.24
251 252 6.288294 ACACATTTATGCTCATGGTACGTAT 58.712 36.000 0.00 0.00 0.00 3.06
252 253 5.666462 ACACATTTATGCTCATGGTACGTA 58.334 37.500 0.00 0.00 0.00 3.57
253 254 4.513442 ACACATTTATGCTCATGGTACGT 58.487 39.130 0.00 0.00 0.00 3.57
255 256 5.356751 TCCAACACATTTATGCTCATGGTAC 59.643 40.000 0.00 0.00 0.00 3.34
256 257 5.504853 TCCAACACATTTATGCTCATGGTA 58.495 37.500 0.00 0.00 0.00 3.25
257 258 4.343231 TCCAACACATTTATGCTCATGGT 58.657 39.130 0.00 0.00 0.00 3.55
258 259 4.400251 ACTCCAACACATTTATGCTCATGG 59.600 41.667 0.00 0.00 0.00 3.66
260 261 5.255687 TGACTCCAACACATTTATGCTCAT 58.744 37.500 0.00 0.00 0.00 2.90
261 262 4.650734 TGACTCCAACACATTTATGCTCA 58.349 39.130 0.00 0.00 0.00 4.26
262 263 5.449588 CCATGACTCCAACACATTTATGCTC 60.450 44.000 0.00 0.00 0.00 4.26
263 264 4.400251 CCATGACTCCAACACATTTATGCT 59.600 41.667 0.00 0.00 0.00 3.79
265 266 5.415389 TGTCCATGACTCCAACACATTTATG 59.585 40.000 0.00 0.00 33.15 1.90
266 267 5.569355 TGTCCATGACTCCAACACATTTAT 58.431 37.500 0.00 0.00 33.15 1.40
267 268 4.979335 TGTCCATGACTCCAACACATTTA 58.021 39.130 0.00 0.00 33.15 1.40
268 269 3.831323 TGTCCATGACTCCAACACATTT 58.169 40.909 0.00 0.00 33.15 2.32
269 270 3.507162 TGTCCATGACTCCAACACATT 57.493 42.857 0.00 0.00 33.15 2.71
272 273 3.411446 TCATTGTCCATGACTCCAACAC 58.589 45.455 0.00 0.00 36.94 3.32
273 274 3.786368 TCATTGTCCATGACTCCAACA 57.214 42.857 0.00 0.00 36.94 3.33
274 275 4.520492 AGTTTCATTGTCCATGACTCCAAC 59.480 41.667 0.00 0.00 41.98 3.77
275 276 4.728772 AGTTTCATTGTCCATGACTCCAA 58.271 39.130 0.00 0.00 41.98 3.53
276 277 4.202451 TGAGTTTCATTGTCCATGACTCCA 60.202 41.667 0.00 0.00 41.98 3.86
277 278 4.326826 TGAGTTTCATTGTCCATGACTCC 58.673 43.478 0.00 0.00 41.98 3.85
279 280 5.563592 TCATGAGTTTCATTGTCCATGACT 58.436 37.500 0.00 0.00 41.98 3.41
281 282 5.807909 TCTCATGAGTTTCATTGTCCATGA 58.192 37.500 21.92 0.00 40.43 3.07
283 284 6.058553 TCTCTCATGAGTTTCATTGTCCAT 57.941 37.500 21.92 0.00 40.98 3.41
287 288 5.338219 CCCTCTCTCTCATGAGTTTCATTGT 60.338 44.000 21.92 0.00 40.98 2.71
288 289 5.117584 CCCTCTCTCTCATGAGTTTCATTG 58.882 45.833 21.92 7.11 40.98 2.82
289 290 4.163839 CCCCTCTCTCTCATGAGTTTCATT 59.836 45.833 21.92 0.00 40.98 2.57
290 291 3.710677 CCCCTCTCTCTCATGAGTTTCAT 59.289 47.826 21.92 0.00 40.98 2.57
291 292 3.102972 CCCCTCTCTCTCATGAGTTTCA 58.897 50.000 21.92 2.08 40.98 2.69
294 295 1.273495 TGCCCCTCTCTCTCATGAGTT 60.273 52.381 21.92 0.00 40.98 3.01
297 298 1.836166 CTTTGCCCCTCTCTCTCATGA 59.164 52.381 0.00 0.00 0.00 3.07
298 299 1.746516 GCTTTGCCCCTCTCTCTCATG 60.747 57.143 0.00 0.00 0.00 3.07
299 300 0.545646 GCTTTGCCCCTCTCTCTCAT 59.454 55.000 0.00 0.00 0.00 2.90
302 303 1.958288 TAAGCTTTGCCCCTCTCTCT 58.042 50.000 3.20 0.00 0.00 3.10
305 306 2.789409 TCTTAAGCTTTGCCCCTCTC 57.211 50.000 3.20 0.00 0.00 3.20
307 308 2.095461 CCTTCTTAAGCTTTGCCCCTC 58.905 52.381 3.20 0.00 0.00 4.30
308 309 1.710809 TCCTTCTTAAGCTTTGCCCCT 59.289 47.619 3.20 0.00 0.00 4.79
309 310 2.095461 CTCCTTCTTAAGCTTTGCCCC 58.905 52.381 3.20 0.00 0.00 5.80
310 311 3.073274 TCTCCTTCTTAAGCTTTGCCC 57.927 47.619 3.20 0.00 0.00 5.36
311 312 5.651387 AATTCTCCTTCTTAAGCTTTGCC 57.349 39.130 3.20 0.00 0.00 4.52
312 313 7.989826 TGATAATTCTCCTTCTTAAGCTTTGC 58.010 34.615 3.20 0.00 0.00 3.68
313 314 9.171877 ACTGATAATTCTCCTTCTTAAGCTTTG 57.828 33.333 3.20 0.00 0.00 2.77
314 315 9.746457 AACTGATAATTCTCCTTCTTAAGCTTT 57.254 29.630 3.20 0.00 0.00 3.51
315 316 9.171877 CAACTGATAATTCTCCTTCTTAAGCTT 57.828 33.333 3.48 3.48 0.00 3.74
316 317 7.772757 CCAACTGATAATTCTCCTTCTTAAGCT 59.227 37.037 0.00 0.00 0.00 3.74
317 318 7.012799 CCCAACTGATAATTCTCCTTCTTAAGC 59.987 40.741 0.00 0.00 0.00 3.09
319 320 6.828785 GCCCAACTGATAATTCTCCTTCTTAA 59.171 38.462 0.00 0.00 0.00 1.85
320 321 6.069673 TGCCCAACTGATAATTCTCCTTCTTA 60.070 38.462 0.00 0.00 0.00 2.10
321 322 5.196695 GCCCAACTGATAATTCTCCTTCTT 58.803 41.667 0.00 0.00 0.00 2.52
322 323 4.228210 TGCCCAACTGATAATTCTCCTTCT 59.772 41.667 0.00 0.00 0.00 2.85
323 324 4.526970 TGCCCAACTGATAATTCTCCTTC 58.473 43.478 0.00 0.00 0.00 3.46
326 327 6.491403 ACATATTGCCCAACTGATAATTCTCC 59.509 38.462 0.00 0.00 0.00 3.71
327 328 7.516198 ACATATTGCCCAACTGATAATTCTC 57.484 36.000 0.00 0.00 0.00 2.87
328 329 7.998383 TGTACATATTGCCCAACTGATAATTCT 59.002 33.333 0.00 0.00 0.00 2.40
329 330 8.165239 TGTACATATTGCCCAACTGATAATTC 57.835 34.615 0.00 0.00 0.00 2.17
330 331 7.255590 GCTGTACATATTGCCCAACTGATAATT 60.256 37.037 0.00 0.00 0.00 1.40
331 332 6.207417 GCTGTACATATTGCCCAACTGATAAT 59.793 38.462 0.00 0.00 0.00 1.28
332 333 5.530915 GCTGTACATATTGCCCAACTGATAA 59.469 40.000 0.00 0.00 0.00 1.75
333 334 5.063204 GCTGTACATATTGCCCAACTGATA 58.937 41.667 0.00 0.00 0.00 2.15
334 335 3.885297 GCTGTACATATTGCCCAACTGAT 59.115 43.478 0.00 0.00 0.00 2.90
335 336 3.278574 GCTGTACATATTGCCCAACTGA 58.721 45.455 0.00 0.00 0.00 3.41
336 337 2.358898 GGCTGTACATATTGCCCAACTG 59.641 50.000 11.82 0.00 39.49 3.16
337 338 2.025416 TGGCTGTACATATTGCCCAACT 60.025 45.455 18.30 0.00 44.32 3.16
338 339 2.374184 TGGCTGTACATATTGCCCAAC 58.626 47.619 18.30 0.00 44.32 3.77
339 340 2.816777 TGGCTGTACATATTGCCCAA 57.183 45.000 18.30 1.42 44.32 4.12
340 341 2.816777 TTGGCTGTACATATTGCCCA 57.183 45.000 18.30 7.35 44.32 5.36
341 342 4.141959 ACAAATTGGCTGTACATATTGCCC 60.142 41.667 18.30 4.49 44.32 5.36
342 343 4.805192 CACAAATTGGCTGTACATATTGCC 59.195 41.667 15.18 15.18 45.10 4.52
343 344 4.805192 CCACAAATTGGCTGTACATATTGC 59.195 41.667 0.00 0.00 39.07 3.56
345 346 8.532186 TTATCCACAAATTGGCTGTACATATT 57.468 30.769 0.00 0.00 46.47 1.28
346 347 8.579006 CATTATCCACAAATTGGCTGTACATAT 58.421 33.333 0.00 0.00 46.47 1.78
347 348 7.559533 ACATTATCCACAAATTGGCTGTACATA 59.440 33.333 0.00 0.00 46.47 2.29
348 349 6.380846 ACATTATCCACAAATTGGCTGTACAT 59.619 34.615 0.00 0.00 46.47 2.29
349 350 5.714333 ACATTATCCACAAATTGGCTGTACA 59.286 36.000 0.00 0.00 46.47 2.90
350 351 6.035843 CACATTATCCACAAATTGGCTGTAC 58.964 40.000 0.00 0.00 46.47 2.90
351 352 5.714333 ACACATTATCCACAAATTGGCTGTA 59.286 36.000 0.00 0.00 46.47 2.74
352 353 4.527816 ACACATTATCCACAAATTGGCTGT 59.472 37.500 0.00 0.00 46.47 4.40
354 355 4.160252 GGACACATTATCCACAAATTGGCT 59.840 41.667 0.00 0.00 46.47 4.75
355 356 4.081752 TGGACACATTATCCACAAATTGGC 60.082 41.667 0.00 0.00 46.47 4.52
356 357 6.035368 TTGGACACATTATCCACAAATTGG 57.965 37.500 0.00 0.00 46.09 3.16
357 358 8.550710 AATTTGGACACATTATCCACAAATTG 57.449 30.769 10.52 0.00 46.09 2.32
361 362 9.650539 CAAATAATTTGGACACATTATCCACAA 57.349 29.630 4.67 0.00 46.09 3.33
364 365 9.253832 AGTCAAATAATTTGGACACATTATCCA 57.746 29.630 5.58 0.00 44.74 3.41
368 369 9.521841 TGGTAGTCAAATAATTTGGACACATTA 57.478 29.630 5.58 0.00 40.98 1.90
369 370 8.415950 TGGTAGTCAAATAATTTGGACACATT 57.584 30.769 5.58 0.00 40.98 2.71
370 371 8.415950 TTGGTAGTCAAATAATTTGGACACAT 57.584 30.769 5.58 0.00 40.98 3.21
371 372 7.721842 TCTTGGTAGTCAAATAATTTGGACACA 59.278 33.333 5.58 0.00 40.98 3.72
373 374 8.739039 CATCTTGGTAGTCAAATAATTTGGACA 58.261 33.333 5.58 0.00 40.98 4.02
375 376 8.292444 CCATCTTGGTAGTCAAATAATTTGGA 57.708 34.615 0.00 0.00 35.58 3.53
389 390 5.128499 ATGAGACTTCAGACCATCTTGGTAG 59.872 44.000 0.00 0.00 42.51 3.18
390 391 5.026121 ATGAGACTTCAGACCATCTTGGTA 58.974 41.667 0.00 0.00 42.51 3.25
391 392 3.843027 ATGAGACTTCAGACCATCTTGGT 59.157 43.478 0.00 0.00 44.17 3.67
392 393 3.969287 TGAGACTTCAGACCATCTTGG 57.031 47.619 0.00 0.00 45.02 3.61
394 395 3.370315 GCCATGAGACTTCAGACCATCTT 60.370 47.826 0.00 0.00 36.61 2.40
395 396 2.170187 GCCATGAGACTTCAGACCATCT 59.830 50.000 0.00 0.00 36.61 2.90
396 397 2.093288 TGCCATGAGACTTCAGACCATC 60.093 50.000 0.00 0.00 36.61 3.51
397 398 1.911357 TGCCATGAGACTTCAGACCAT 59.089 47.619 0.00 0.00 36.61 3.55
398 399 1.351076 TGCCATGAGACTTCAGACCA 58.649 50.000 0.00 0.00 36.61 4.02
399 400 2.286872 CATGCCATGAGACTTCAGACC 58.713 52.381 0.00 0.00 36.61 3.85
402 403 2.704464 TCCATGCCATGAGACTTCAG 57.296 50.000 6.18 0.00 36.61 3.02
403 404 3.657398 AATCCATGCCATGAGACTTCA 57.343 42.857 6.18 0.00 37.81 3.02
404 405 5.221126 GGTTTAATCCATGCCATGAGACTTC 60.221 44.000 6.18 0.00 0.00 3.01
409 410 5.069383 TCATTGGTTTAATCCATGCCATGAG 59.931 40.000 6.18 0.00 37.33 2.90
410 411 4.961099 TCATTGGTTTAATCCATGCCATGA 59.039 37.500 6.18 9.19 37.33 3.07
411 412 5.279255 TCATTGGTTTAATCCATGCCATG 57.721 39.130 6.09 7.22 37.33 3.66
412 413 4.345837 CCTCATTGGTTTAATCCATGCCAT 59.654 41.667 6.09 0.00 37.33 4.40
413 414 3.705579 CCTCATTGGTTTAATCCATGCCA 59.294 43.478 6.09 0.00 37.33 4.92
415 416 3.385755 AGCCTCATTGGTTTAATCCATGC 59.614 43.478 6.09 5.18 37.33 4.06
416 417 6.491062 TGATAGCCTCATTGGTTTAATCCATG 59.509 38.462 6.09 7.20 37.33 3.66
418 419 6.012337 TGATAGCCTCATTGGTTTAATCCA 57.988 37.500 0.86 0.86 38.35 3.41
421 422 9.289782 GTTCTATGATAGCCTCATTGGTTTAAT 57.710 33.333 4.84 0.00 42.07 1.40
422 423 8.494433 AGTTCTATGATAGCCTCATTGGTTTAA 58.506 33.333 4.84 0.00 42.07 1.52
423 424 8.034313 AGTTCTATGATAGCCTCATTGGTTTA 57.966 34.615 4.84 0.00 42.07 2.01
424 425 6.904626 AGTTCTATGATAGCCTCATTGGTTT 58.095 36.000 4.84 0.00 42.07 3.27
426 427 6.506538 AAGTTCTATGATAGCCTCATTGGT 57.493 37.500 4.84 0.00 42.07 3.67
427 428 7.118971 GCTTAAGTTCTATGATAGCCTCATTGG 59.881 40.741 4.02 0.64 42.07 3.16
428 429 7.658982 TGCTTAAGTTCTATGATAGCCTCATTG 59.341 37.037 4.02 3.86 42.07 2.82
429 430 7.739825 TGCTTAAGTTCTATGATAGCCTCATT 58.260 34.615 4.02 0.00 42.07 2.57
430 431 7.234371 TCTGCTTAAGTTCTATGATAGCCTCAT 59.766 37.037 4.02 4.90 46.49 2.90
432 433 6.987386 TCTGCTTAAGTTCTATGATAGCCTC 58.013 40.000 4.02 0.00 0.00 4.70
433 434 6.985653 TCTGCTTAAGTTCTATGATAGCCT 57.014 37.500 4.02 0.00 0.00 4.58
434 435 8.438676 TTTTCTGCTTAAGTTCTATGATAGCC 57.561 34.615 4.02 0.00 0.00 3.93
435 436 9.928236 CTTTTTCTGCTTAAGTTCTATGATAGC 57.072 33.333 4.02 0.00 0.00 2.97
439 440 8.936864 GCTACTTTTTCTGCTTAAGTTCTATGA 58.063 33.333 4.02 0.00 34.26 2.15
440 441 8.721478 TGCTACTTTTTCTGCTTAAGTTCTATG 58.279 33.333 4.02 0.00 34.26 2.23
441 442 8.848474 TGCTACTTTTTCTGCTTAAGTTCTAT 57.152 30.769 4.02 0.00 34.26 1.98
442 443 7.095187 GCTGCTACTTTTTCTGCTTAAGTTCTA 60.095 37.037 4.02 0.00 34.26 2.10
443 444 6.293680 GCTGCTACTTTTTCTGCTTAAGTTCT 60.294 38.462 4.02 0.00 34.26 3.01
446 447 5.066593 AGCTGCTACTTTTTCTGCTTAAGT 58.933 37.500 0.00 0.00 36.23 2.24
447 448 5.619625 AGCTGCTACTTTTTCTGCTTAAG 57.380 39.130 0.00 0.00 32.32 1.85
450 451 3.885297 TCAAGCTGCTACTTTTTCTGCTT 59.115 39.130 0.90 0.00 42.82 3.91
451 452 3.480470 TCAAGCTGCTACTTTTTCTGCT 58.520 40.909 0.90 0.00 36.74 4.24
452 453 3.365767 CCTCAAGCTGCTACTTTTTCTGC 60.366 47.826 0.90 0.00 0.00 4.26
454 455 4.322567 CTCCTCAAGCTGCTACTTTTTCT 58.677 43.478 0.90 0.00 0.00 2.52
468 469 3.118482 TCAATCTTAGCCTGCTCCTCAAG 60.118 47.826 0.00 0.00 0.00 3.02
469 470 2.840038 TCAATCTTAGCCTGCTCCTCAA 59.160 45.455 0.00 0.00 0.00 3.02
470 471 2.433604 CTCAATCTTAGCCTGCTCCTCA 59.566 50.000 0.00 0.00 0.00 3.86
471 472 2.697751 TCTCAATCTTAGCCTGCTCCTC 59.302 50.000 0.00 0.00 0.00 3.71
472 473 2.756907 TCTCAATCTTAGCCTGCTCCT 58.243 47.619 0.00 0.00 0.00 3.69
473 474 3.767902 ATCTCAATCTTAGCCTGCTCC 57.232 47.619 0.00 0.00 0.00 4.70
474 475 5.010516 TCTGTATCTCAATCTTAGCCTGCTC 59.989 44.000 0.00 0.00 0.00 4.26
475 476 4.898265 TCTGTATCTCAATCTTAGCCTGCT 59.102 41.667 0.00 0.00 0.00 4.24
476 477 5.207110 TCTGTATCTCAATCTTAGCCTGC 57.793 43.478 0.00 0.00 0.00 4.85
478 479 6.080682 TCCATCTGTATCTCAATCTTAGCCT 58.919 40.000 0.00 0.00 0.00 4.58
481 482 9.829507 AGTTTTCCATCTGTATCTCAATCTTAG 57.170 33.333 0.00 0.00 0.00 2.18
482 483 9.605275 CAGTTTTCCATCTGTATCTCAATCTTA 57.395 33.333 0.00 0.00 0.00 2.10
483 484 8.324306 TCAGTTTTCCATCTGTATCTCAATCTT 58.676 33.333 0.00 0.00 33.89 2.40
484 485 7.855375 TCAGTTTTCCATCTGTATCTCAATCT 58.145 34.615 0.00 0.00 33.89 2.40
485 486 8.498054 TTCAGTTTTCCATCTGTATCTCAATC 57.502 34.615 0.00 0.00 33.89 2.67
486 487 7.066766 GCTTCAGTTTTCCATCTGTATCTCAAT 59.933 37.037 0.00 0.00 33.89 2.57
487 488 6.372659 GCTTCAGTTTTCCATCTGTATCTCAA 59.627 38.462 0.00 0.00 33.89 3.02
488 489 5.877012 GCTTCAGTTTTCCATCTGTATCTCA 59.123 40.000 0.00 0.00 33.89 3.27
489 490 6.036953 CAGCTTCAGTTTTCCATCTGTATCTC 59.963 42.308 0.00 0.00 33.89 2.75
490 491 5.879223 CAGCTTCAGTTTTCCATCTGTATCT 59.121 40.000 0.00 0.00 33.89 1.98
491 492 5.877012 TCAGCTTCAGTTTTCCATCTGTATC 59.123 40.000 0.00 0.00 33.89 2.24
492 493 5.809001 TCAGCTTCAGTTTTCCATCTGTAT 58.191 37.500 0.00 0.00 33.89 2.29
493 494 5.227569 TCAGCTTCAGTTTTCCATCTGTA 57.772 39.130 0.00 0.00 33.89 2.74
494 495 4.090761 TCAGCTTCAGTTTTCCATCTGT 57.909 40.909 0.00 0.00 33.89 3.41
495 496 5.443185 TTTCAGCTTCAGTTTTCCATCTG 57.557 39.130 0.00 0.00 0.00 2.90
497 498 6.925165 TCATTTTTCAGCTTCAGTTTTCCATC 59.075 34.615 0.00 0.00 0.00 3.51
498 499 6.819284 TCATTTTTCAGCTTCAGTTTTCCAT 58.181 32.000 0.00 0.00 0.00 3.41
499 500 6.219417 TCATTTTTCAGCTTCAGTTTTCCA 57.781 33.333 0.00 0.00 0.00 3.53
500 501 5.176406 GCTCATTTTTCAGCTTCAGTTTTCC 59.824 40.000 0.00 0.00 0.00 3.13
501 502 5.750067 TGCTCATTTTTCAGCTTCAGTTTTC 59.250 36.000 0.00 0.00 0.00 2.29
502 503 5.663456 TGCTCATTTTTCAGCTTCAGTTTT 58.337 33.333 0.00 0.00 0.00 2.43
503 504 5.266733 TGCTCATTTTTCAGCTTCAGTTT 57.733 34.783 0.00 0.00 0.00 2.66
504 505 4.924305 TGCTCATTTTTCAGCTTCAGTT 57.076 36.364 0.00 0.00 0.00 3.16
505 506 5.125097 CCTATGCTCATTTTTCAGCTTCAGT 59.875 40.000 0.00 0.00 0.00 3.41
506 507 5.125097 ACCTATGCTCATTTTTCAGCTTCAG 59.875 40.000 0.00 0.00 0.00 3.02
507 508 5.012239 ACCTATGCTCATTTTTCAGCTTCA 58.988 37.500 0.00 0.00 0.00 3.02
508 509 5.338365 CACCTATGCTCATTTTTCAGCTTC 58.662 41.667 0.00 0.00 0.00 3.86
509 510 5.320549 CACCTATGCTCATTTTTCAGCTT 57.679 39.130 0.00 0.00 0.00 3.74
532 533 2.355132 GTCAGCTTGAATCTGCAGGATG 59.645 50.000 15.13 5.56 40.87 3.51
533 534 2.026542 TGTCAGCTTGAATCTGCAGGAT 60.027 45.455 15.13 2.41 35.97 3.24
534 535 1.348696 TGTCAGCTTGAATCTGCAGGA 59.651 47.619 15.13 0.57 0.00 3.86
535 536 1.817357 TGTCAGCTTGAATCTGCAGG 58.183 50.000 15.13 0.00 0.00 4.85
536 537 3.007635 TGATGTCAGCTTGAATCTGCAG 58.992 45.455 7.63 7.63 0.00 4.41
538 539 3.003482 GGATGATGTCAGCTTGAATCTGC 59.997 47.826 0.00 0.00 31.98 4.26
539 540 4.035324 GTGGATGATGTCAGCTTGAATCTG 59.965 45.833 0.00 0.00 31.98 2.90
540 541 4.197750 GTGGATGATGTCAGCTTGAATCT 58.802 43.478 0.00 0.00 31.98 2.40
541 542 3.943381 TGTGGATGATGTCAGCTTGAATC 59.057 43.478 0.00 0.00 31.98 2.52
542 543 3.959293 TGTGGATGATGTCAGCTTGAAT 58.041 40.909 0.00 0.00 31.98 2.57
545 546 2.815503 TGTTGTGGATGATGTCAGCTTG 59.184 45.455 0.00 0.00 31.98 4.01
546 547 2.816087 GTGTTGTGGATGATGTCAGCTT 59.184 45.455 0.00 0.00 31.98 3.74
547 548 2.224597 TGTGTTGTGGATGATGTCAGCT 60.225 45.455 0.00 0.00 31.98 4.24
549 550 3.187842 CAGTGTGTTGTGGATGATGTCAG 59.812 47.826 0.00 0.00 0.00 3.51
551 552 3.402110 TCAGTGTGTTGTGGATGATGTC 58.598 45.455 0.00 0.00 0.00 3.06
553 554 4.067192 TCTTCAGTGTGTTGTGGATGATG 58.933 43.478 0.00 0.00 0.00 3.07
554 555 4.067896 GTCTTCAGTGTGTTGTGGATGAT 58.932 43.478 0.00 0.00 0.00 2.45
555 556 3.118445 TGTCTTCAGTGTGTTGTGGATGA 60.118 43.478 0.00 0.00 0.00 2.92
557 558 3.558931 TGTCTTCAGTGTGTTGTGGAT 57.441 42.857 0.00 0.00 0.00 3.41
558 559 3.342377 TTGTCTTCAGTGTGTTGTGGA 57.658 42.857 0.00 0.00 0.00 4.02
559 560 3.627123 TCATTGTCTTCAGTGTGTTGTGG 59.373 43.478 0.00 0.00 33.83 4.17
561 562 4.336433 CCTTCATTGTCTTCAGTGTGTTGT 59.664 41.667 0.00 0.00 33.83 3.32
562 563 4.576053 TCCTTCATTGTCTTCAGTGTGTTG 59.424 41.667 0.00 0.00 33.83 3.33
564 565 4.101585 TCTCCTTCATTGTCTTCAGTGTGT 59.898 41.667 0.00 0.00 33.83 3.72
566 567 4.963318 TCTCCTTCATTGTCTTCAGTGT 57.037 40.909 0.00 0.00 33.83 3.55
567 568 6.871844 TCTATCTCCTTCATTGTCTTCAGTG 58.128 40.000 0.00 0.00 33.48 3.66
571 572 7.153985 CCATCTCTATCTCCTTCATTGTCTTC 58.846 42.308 0.00 0.00 0.00 2.87
572 573 6.043012 CCCATCTCTATCTCCTTCATTGTCTT 59.957 42.308 0.00 0.00 0.00 3.01
573 574 5.543405 CCCATCTCTATCTCCTTCATTGTCT 59.457 44.000 0.00 0.00 0.00 3.41
577 578 6.868826 TCTACCCATCTCTATCTCCTTCATT 58.131 40.000 0.00 0.00 0.00 2.57
578 579 6.476409 TCTACCCATCTCTATCTCCTTCAT 57.524 41.667 0.00 0.00 0.00 2.57
579 580 5.222233 CCTCTACCCATCTCTATCTCCTTCA 60.222 48.000 0.00 0.00 0.00 3.02
580 581 5.261216 CCTCTACCCATCTCTATCTCCTTC 58.739 50.000 0.00 0.00 0.00 3.46
581 582 4.510205 GCCTCTACCCATCTCTATCTCCTT 60.510 50.000 0.00 0.00 0.00 3.36
582 583 3.011257 GCCTCTACCCATCTCTATCTCCT 59.989 52.174 0.00 0.00 0.00 3.69
583 584 3.361786 GCCTCTACCCATCTCTATCTCC 58.638 54.545 0.00 0.00 0.00 3.71
584 585 3.011257 AGGCCTCTACCCATCTCTATCTC 59.989 52.174 0.00 0.00 0.00 2.75
585 586 3.000360 AGGCCTCTACCCATCTCTATCT 59.000 50.000 0.00 0.00 0.00 1.98
586 587 3.096092 CAGGCCTCTACCCATCTCTATC 58.904 54.545 0.00 0.00 0.00 2.08
587 588 2.825072 GCAGGCCTCTACCCATCTCTAT 60.825 54.545 0.00 0.00 0.00 1.98
589 590 0.762461 GCAGGCCTCTACCCATCTCT 60.762 60.000 0.00 0.00 0.00 3.10
590 591 0.762461 AGCAGGCCTCTACCCATCTC 60.762 60.000 0.00 0.00 0.00 2.75
592 593 1.424638 TAAGCAGGCCTCTACCCATC 58.575 55.000 0.00 0.00 0.00 3.51
595 596 1.838077 TCTTTAAGCAGGCCTCTACCC 59.162 52.381 0.00 0.00 0.00 3.69
596 597 2.236395 TGTCTTTAAGCAGGCCTCTACC 59.764 50.000 0.00 0.00 0.00 3.18
597 598 3.611766 TGTCTTTAAGCAGGCCTCTAC 57.388 47.619 0.00 0.00 0.00 2.59
598 599 4.634012 TTTGTCTTTAAGCAGGCCTCTA 57.366 40.909 0.00 0.00 0.00 2.43
600 601 4.550422 CTTTTTGTCTTTAAGCAGGCCTC 58.450 43.478 0.00 0.00 0.00 4.70
601 602 3.321968 CCTTTTTGTCTTTAAGCAGGCCT 59.678 43.478 0.00 0.00 0.00 5.19
602 603 3.320826 TCCTTTTTGTCTTTAAGCAGGCC 59.679 43.478 0.00 0.00 0.00 5.19
603 604 4.278419 TCTCCTTTTTGTCTTTAAGCAGGC 59.722 41.667 0.00 0.00 0.00 4.85
604 605 5.048434 CCTCTCCTTTTTGTCTTTAAGCAGG 60.048 44.000 0.00 0.00 0.00 4.85
606 607 5.445964 ACCTCTCCTTTTTGTCTTTAAGCA 58.554 37.500 0.00 0.00 0.00 3.91
607 608 5.334182 CGACCTCTCCTTTTTGTCTTTAAGC 60.334 44.000 0.00 0.00 0.00 3.09
608 609 5.989777 TCGACCTCTCCTTTTTGTCTTTAAG 59.010 40.000 0.00 0.00 0.00 1.85
610 611 5.163385 TGTCGACCTCTCCTTTTTGTCTTTA 60.163 40.000 14.12 0.00 0.00 1.85
614 615 3.060602 CTGTCGACCTCTCCTTTTTGTC 58.939 50.000 14.12 0.00 0.00 3.18
615 616 2.434702 ACTGTCGACCTCTCCTTTTTGT 59.565 45.455 14.12 0.00 0.00 2.83
616 617 2.802816 CACTGTCGACCTCTCCTTTTTG 59.197 50.000 14.12 0.00 0.00 2.44
618 619 1.270358 GCACTGTCGACCTCTCCTTTT 60.270 52.381 14.12 0.00 0.00 2.27
619 620 0.318762 GCACTGTCGACCTCTCCTTT 59.681 55.000 14.12 0.00 0.00 3.11
622 623 1.214062 CAGCACTGTCGACCTCTCC 59.786 63.158 14.12 0.00 0.00 3.71
624 625 2.936912 GCCAGCACTGTCGACCTCT 61.937 63.158 14.12 1.62 0.00 3.69
625 626 2.433318 GCCAGCACTGTCGACCTC 60.433 66.667 14.12 0.00 0.00 3.85
626 627 2.807107 TTGCCAGCACTGTCGACCT 61.807 57.895 14.12 0.00 0.00 3.85
628 629 1.887242 TGTTGCCAGCACTGTCGAC 60.887 57.895 9.11 9.11 0.00 4.20
629 630 1.887242 GTGTTGCCAGCACTGTCGA 60.887 57.895 4.26 0.00 34.30 4.20
630 631 1.835483 GAGTGTTGCCAGCACTGTCG 61.835 60.000 19.34 0.00 45.99 4.35
631 632 0.815213 TGAGTGTTGCCAGCACTGTC 60.815 55.000 19.34 6.46 45.99 3.51
632 633 0.394216 TTGAGTGTTGCCAGCACTGT 60.394 50.000 19.34 0.00 45.99 3.55
633 634 0.740149 TTTGAGTGTTGCCAGCACTG 59.260 50.000 19.34 0.00 45.99 3.66
635 636 2.292103 TTTTTGAGTGTTGCCAGCAC 57.708 45.000 3.17 3.17 37.13 4.40
637 638 2.224018 TGGATTTTTGAGTGTTGCCAGC 60.224 45.455 0.00 0.00 0.00 4.85
638 639 3.068590 ACTGGATTTTTGAGTGTTGCCAG 59.931 43.478 0.00 0.00 45.36 4.85
640 641 3.733443 ACTGGATTTTTGAGTGTTGCC 57.267 42.857 0.00 0.00 0.00 4.52
642 643 3.803778 GGCAACTGGATTTTTGAGTGTTG 59.196 43.478 0.00 0.00 37.11 3.33
644 645 2.034558 CGGCAACTGGATTTTTGAGTGT 59.965 45.455 0.00 0.00 0.00 3.55
645 646 2.664916 CGGCAACTGGATTTTTGAGTG 58.335 47.619 0.00 0.00 0.00 3.51
646 647 1.000274 GCGGCAACTGGATTTTTGAGT 60.000 47.619 0.00 0.00 0.00 3.41
648 649 1.269448 GAGCGGCAACTGGATTTTTGA 59.731 47.619 1.45 0.00 0.00 2.69
649 650 1.701704 GAGCGGCAACTGGATTTTTG 58.298 50.000 1.45 0.00 0.00 2.44
650 651 0.240945 CGAGCGGCAACTGGATTTTT 59.759 50.000 1.45 0.00 0.00 1.94
652 653 2.040544 CCGAGCGGCAACTGGATTT 61.041 57.895 1.45 0.00 0.00 2.17
653 654 2.436646 CCGAGCGGCAACTGGATT 60.437 61.111 1.45 0.00 0.00 3.01
666 667 3.217743 GGGGTCGAGGTAGCCGAG 61.218 72.222 5.87 0.00 37.93 4.63
669 670 1.551019 AACTTGGGGTCGAGGTAGCC 61.551 60.000 0.00 0.00 36.24 3.93
670 671 0.323957 AAACTTGGGGTCGAGGTAGC 59.676 55.000 0.00 0.00 0.00 3.58
671 672 3.967332 TTAAACTTGGGGTCGAGGTAG 57.033 47.619 0.00 0.00 0.00 3.18
673 674 2.440627 ACTTTAAACTTGGGGTCGAGGT 59.559 45.455 0.00 0.00 0.00 3.85
674 675 3.136009 ACTTTAAACTTGGGGTCGAGG 57.864 47.619 0.00 0.00 0.00 4.63
675 676 5.509716 AAAACTTTAAACTTGGGGTCGAG 57.490 39.130 0.00 0.00 0.00 4.04
677 678 6.381481 ACTAAAACTTTAAACTTGGGGTCG 57.619 37.500 0.00 0.00 0.00 4.79
678 679 9.687210 CAATACTAAAACTTTAAACTTGGGGTC 57.313 33.333 0.00 0.00 0.00 4.46
742 743 9.467258 GAAAATTCTTTTGTCATGATGTTGAGA 57.533 29.630 0.00 0.00 31.94 3.27
767 768 9.834628 CAACTTTGAAACTTTTAGTACTGTTGA 57.165 29.630 5.39 0.00 32.90 3.18
768 769 9.072294 CCAACTTTGAAACTTTTAGTACTGTTG 57.928 33.333 5.39 6.30 0.00 3.33
769 770 7.758076 GCCAACTTTGAAACTTTTAGTACTGTT 59.242 33.333 5.39 0.00 0.00 3.16
771 772 6.695713 GGCCAACTTTGAAACTTTTAGTACTG 59.304 38.462 5.39 0.00 0.00 2.74
772 773 6.183360 GGGCCAACTTTGAAACTTTTAGTACT 60.183 38.462 4.39 0.00 0.00 2.73
773 774 5.981315 GGGCCAACTTTGAAACTTTTAGTAC 59.019 40.000 4.39 0.00 0.00 2.73
775 776 4.468153 TGGGCCAACTTTGAAACTTTTAGT 59.532 37.500 2.13 0.00 0.00 2.24
776 777 5.017294 TGGGCCAACTTTGAAACTTTTAG 57.983 39.130 2.13 0.00 0.00 1.85
777 778 5.422214 TTGGGCCAACTTTGAAACTTTTA 57.578 34.783 16.66 0.00 0.00 1.52
779 780 3.990959 TTGGGCCAACTTTGAAACTTT 57.009 38.095 16.66 0.00 0.00 2.66
781 782 5.622346 TTTATTGGGCCAACTTTGAAACT 57.378 34.783 23.59 4.63 0.00 2.66
882 893 0.110486 TTTGGGTCTGGGTCAGCTTC 59.890 55.000 0.00 0.00 0.00 3.86
997 1010 2.506472 GGAGGAGTCGGCCATTCC 59.494 66.667 2.24 6.28 0.00 3.01
1450 4151 1.388837 TAGTAGCGCATGGGCTTCGA 61.389 55.000 37.82 27.01 41.39 3.71
1839 5897 1.227527 CACGGTGTGGCACTCTTCA 60.228 57.895 19.83 0.00 34.40 3.02
1887 5945 3.551496 CTTCCAGTTGAGGCCGGCA 62.551 63.158 30.85 4.32 0.00 5.69
2058 6116 0.693049 GGACCTTCTCCTTCTTGGCA 59.307 55.000 0.00 0.00 35.89 4.92
2125 6183 8.815912 AGCTCCATTTTAACCAAACTATTGATT 58.184 29.630 0.00 0.00 38.94 2.57
2136 6194 4.202305 CCAAACCAAGCTCCATTTTAACCA 60.202 41.667 0.00 0.00 0.00 3.67
2138 6196 5.208463 TCCAAACCAAGCTCCATTTTAAC 57.792 39.130 0.00 0.00 0.00 2.01
2167 6225 4.081420 CACACTGTATCAGCTTCTAAGGGT 60.081 45.833 0.00 0.00 34.37 4.34
2170 6228 3.868077 GCCACACTGTATCAGCTTCTAAG 59.132 47.826 0.00 0.00 34.37 2.18
2172 6230 2.168521 GGCCACACTGTATCAGCTTCTA 59.831 50.000 0.00 0.00 34.37 2.10
2173 6231 1.065854 GGCCACACTGTATCAGCTTCT 60.066 52.381 0.00 0.00 34.37 2.85
2174 6232 1.339055 TGGCCACACTGTATCAGCTTC 60.339 52.381 0.00 0.00 34.37 3.86
2213 6271 6.039382 ACCCTGAGACAAACAACAATAACTTC 59.961 38.462 0.00 0.00 0.00 3.01
2295 6353 9.181805 GATTCATTCATATGAGAAAAGCACATG 57.818 33.333 5.39 3.98 41.60 3.21
2296 6354 8.909923 TGATTCATTCATATGAGAAAAGCACAT 58.090 29.630 5.39 0.00 41.60 3.21
2297 6355 8.283699 TGATTCATTCATATGAGAAAAGCACA 57.716 30.769 5.39 0.00 41.60 4.57
2300 6358 8.618677 TGTCTGATTCATTCATATGAGAAAAGC 58.381 33.333 5.39 5.17 41.60 3.51
2324 6382 9.816354 GCTTCAAAATGGTATGGTATAAATTGT 57.184 29.630 0.00 0.00 0.00 2.71
2330 6388 8.588290 AGTTTGCTTCAAAATGGTATGGTATA 57.412 30.769 0.00 0.00 35.03 1.47
2396 6829 8.893219 ACATATATTCAGAATGTACCACACAG 57.107 34.615 5.85 0.00 41.51 3.66
2455 6888 2.953648 CCATTGCTATGTGCCAAGATGA 59.046 45.455 7.37 0.00 42.00 2.92
2531 6964 5.539955 GGGAAATGTGGGCTAACATATTCAT 59.460 40.000 18.18 0.00 39.89 2.57
2542 6975 1.078708 CGTACGGGAAATGTGGGCT 60.079 57.895 7.57 0.00 0.00 5.19
2548 6981 1.659098 GCTCTTCACGTACGGGAAATG 59.341 52.381 30.81 25.19 37.06 2.32
2554 6987 0.793478 CTCACGCTCTTCACGTACGG 60.793 60.000 21.06 8.79 42.96 4.02
2556 6989 1.714460 CAACTCACGCTCTTCACGTAC 59.286 52.381 0.00 0.00 42.96 3.67
2600 7033 4.225942 ACAGGCCAAGACTCTCATTTCATA 59.774 41.667 5.01 0.00 0.00 2.15
2787 7222 2.715046 CAGATACACACTGGGCATTGT 58.285 47.619 0.00 0.00 0.00 2.71
3016 7460 6.721571 TCGCCTGAAGTGAAATAACTAAAG 57.278 37.500 0.00 0.00 30.08 1.85
3019 7463 5.128827 AGGATCGCCTGAAGTGAAATAACTA 59.871 40.000 0.00 0.00 44.90 2.24
3045 7489 4.850859 TTGAGCACCATAATTACGAACG 57.149 40.909 0.00 0.00 0.00 3.95
3054 7498 5.414454 GGTTACAAGTCATTGAGCACCATAA 59.586 40.000 0.00 0.00 38.83 1.90
3093 7537 6.573664 ACAGCTTTGAATTACACTGCATAA 57.426 33.333 0.00 0.00 32.20 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.