Multiple sequence alignment - TraesCS7A01G077700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G077700 chr7A 100.000 2846 0 0 1 2846 42541800 42538955 0.000000e+00 5256
1 TraesCS7A01G077700 chr7A 94.485 1106 49 4 735 1840 42963676 42964769 0.000000e+00 1694
2 TraesCS7A01G077700 chr7A 99.049 736 6 1 1 735 701418833 701418098 0.000000e+00 1319
3 TraesCS7A01G077700 chr7A 82.839 472 41 21 2118 2563 42505560 42505103 1.240000e-103 387
4 TraesCS7A01G077700 chr7A 84.831 178 17 10 2378 2552 169041897 169041727 1.360000e-38 171
5 TraesCS7A01G077700 chr7D 93.832 1216 61 6 735 1936 42927318 42926103 0.000000e+00 1818
6 TraesCS7A01G077700 chr7D 93.705 1112 58 4 735 1840 43115802 43116907 0.000000e+00 1655
7 TraesCS7A01G077700 chr7D 91.700 747 47 7 1 735 483125096 483125839 0.000000e+00 1022
8 TraesCS7A01G077700 chr7D 90.411 146 10 1 1941 2086 42926065 42925924 3.740000e-44 189
9 TraesCS7A01G077700 chr4A 93.363 1115 59 3 735 1840 650872034 650870926 0.000000e+00 1635
10 TraesCS7A01G077700 chr4B 98.643 737 9 1 1 736 587859934 587859198 0.000000e+00 1304
11 TraesCS7A01G077700 chr7B 96.739 736 8 2 1 735 689691899 689691179 0.000000e+00 1212
12 TraesCS7A01G077700 chr7B 99.005 201 2 0 542 742 689696141 689695941 7.500000e-96 361
13 TraesCS7A01G077700 chr6D 94.858 739 34 4 1 737 76072011 76071275 0.000000e+00 1151
14 TraesCS7A01G077700 chr5D 94.708 737 35 4 1 735 478695855 478696589 0.000000e+00 1142
15 TraesCS7A01G077700 chr3B 93.121 785 39 3 735 1510 142727048 142726270 0.000000e+00 1136
16 TraesCS7A01G077700 chrUn 98.339 602 9 1 142 742 450909919 450909318 0.000000e+00 1055
17 TraesCS7A01G077700 chr5B 89.946 736 57 9 1 733 279585021 279585742 0.000000e+00 933
18 TraesCS7A01G077700 chr5B 95.688 487 17 1 1 483 470697580 470697094 0.000000e+00 780
19 TraesCS7A01G077700 chr3A 85.930 661 70 14 1 648 496602932 496602282 0.000000e+00 684
20 TraesCS7A01G077700 chr3A 97.561 287 7 0 1221 1507 640698297 640698583 2.550000e-135 492
21 TraesCS7A01G077700 chr6B 86.842 304 24 9 1153 1455 483536361 483536649 2.730000e-85 326
22 TraesCS7A01G077700 chr3D 86.645 307 18 8 1149 1455 597186192 597186475 4.580000e-83 318
23 TraesCS7A01G077700 chr3D 86.645 307 18 8 1149 1455 597190301 597190584 4.580000e-83 318
24 TraesCS7A01G077700 chr2D 97.222 72 2 0 839 910 87983440 87983369 3.850000e-24 122
25 TraesCS7A01G077700 chr5A 87.963 108 3 3 1275 1382 564766805 564766708 4.980000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G077700 chr7A 42538955 42541800 2845 True 5256.0 5256 100.0000 1 2846 1 chr7A.!!$R2 2845
1 TraesCS7A01G077700 chr7A 42963676 42964769 1093 False 1694.0 1694 94.4850 735 1840 1 chr7A.!!$F1 1105
2 TraesCS7A01G077700 chr7A 701418098 701418833 735 True 1319.0 1319 99.0490 1 735 1 chr7A.!!$R4 734
3 TraesCS7A01G077700 chr7D 43115802 43116907 1105 False 1655.0 1655 93.7050 735 1840 1 chr7D.!!$F1 1105
4 TraesCS7A01G077700 chr7D 483125096 483125839 743 False 1022.0 1022 91.7000 1 735 1 chr7D.!!$F2 734
5 TraesCS7A01G077700 chr7D 42925924 42927318 1394 True 1003.5 1818 92.1215 735 2086 2 chr7D.!!$R1 1351
6 TraesCS7A01G077700 chr4A 650870926 650872034 1108 True 1635.0 1635 93.3630 735 1840 1 chr4A.!!$R1 1105
7 TraesCS7A01G077700 chr4B 587859198 587859934 736 True 1304.0 1304 98.6430 1 736 1 chr4B.!!$R1 735
8 TraesCS7A01G077700 chr7B 689691179 689691899 720 True 1212.0 1212 96.7390 1 735 1 chr7B.!!$R1 734
9 TraesCS7A01G077700 chr6D 76071275 76072011 736 True 1151.0 1151 94.8580 1 737 1 chr6D.!!$R1 736
10 TraesCS7A01G077700 chr5D 478695855 478696589 734 False 1142.0 1142 94.7080 1 735 1 chr5D.!!$F1 734
11 TraesCS7A01G077700 chr3B 142726270 142727048 778 True 1136.0 1136 93.1210 735 1510 1 chr3B.!!$R1 775
12 TraesCS7A01G077700 chrUn 450909318 450909919 601 True 1055.0 1055 98.3390 142 742 1 chrUn.!!$R1 600
13 TraesCS7A01G077700 chr5B 279585021 279585742 721 False 933.0 933 89.9460 1 733 1 chr5B.!!$F1 732
14 TraesCS7A01G077700 chr3A 496602282 496602932 650 True 684.0 684 85.9300 1 648 1 chr3A.!!$R1 647
15 TraesCS7A01G077700 chr3D 597186192 597190584 4392 False 318.0 318 86.6450 1149 1455 2 chr3D.!!$F1 306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 620 1.167851 CACATCCAAACAGATGGCGT 58.832 50.0 6.49 0.0 46.56 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 6096 0.107165 CAATCCGGTCCTTTCCCTCC 60.107 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
587 620 1.167851 CACATCCAAACAGATGGCGT 58.832 50.000 6.49 0.00 46.56 5.68
951 1005 3.706373 AACACCCAGCGCCTCGAT 61.706 61.111 2.29 0.00 0.00 3.59
1134 1191 1.676635 CGAGGTCCCCGACTACACA 60.677 63.158 0.00 0.00 32.47 3.72
1449 5621 2.114670 CATCGGCCGCATCAAGGTT 61.115 57.895 23.51 0.00 0.00 3.50
1527 5699 2.027169 GGGGATTACGTCGAGGCG 59.973 66.667 4.75 0.00 37.94 5.52
1652 5824 2.295885 CCTCAACTGGAAGGATCATGC 58.704 52.381 0.00 0.00 39.30 4.06
1665 5837 2.223340 GGATCATGCGGTCATTGACAAC 60.223 50.000 18.09 9.75 33.68 3.32
1830 6002 2.048603 GGTCCTTGTGGATGCTGGC 61.049 63.158 0.00 0.00 45.29 4.85
1835 6007 0.035152 CTTGTGGATGCTGGCTACCA 60.035 55.000 7.05 7.05 0.00 3.25
1841 6013 0.179073 GATGCTGGCTACCACGACAT 60.179 55.000 0.00 0.00 0.00 3.06
1866 6038 2.551071 GCCTTGGAGGGGATTATCTTCG 60.551 54.545 0.00 0.00 35.37 3.79
1871 6043 3.388024 TGGAGGGGATTATCTTCGACAAG 59.612 47.826 0.00 0.00 0.00 3.16
1875 6047 4.901849 AGGGGATTATCTTCGACAAGATCA 59.098 41.667 2.88 0.00 44.86 2.92
1877 6049 5.872070 GGGGATTATCTTCGACAAGATCATC 59.128 44.000 10.77 10.77 44.86 2.92
1878 6050 5.574830 GGGATTATCTTCGACAAGATCATCG 59.425 44.000 12.12 7.51 44.86 3.84
1879 6051 6.153067 GGATTATCTTCGACAAGATCATCGT 58.847 40.000 12.12 0.00 44.86 3.73
1881 6053 3.622828 ATCTTCGACAAGATCATCGTCG 58.377 45.455 19.53 19.53 44.86 5.12
1882 6054 3.065510 ATCTTCGACAAGATCATCGTCGT 59.934 43.478 22.62 8.30 44.86 4.34
1883 6055 5.020287 ATCTTCGACAAGATCATCGTCGTG 61.020 45.833 22.62 18.09 44.86 4.35
1895 6081 0.718904 TCGTCGTGGCGATTTCATTG 59.281 50.000 0.00 0.00 38.42 2.82
1903 6089 0.098728 GCGATTTCATTGACCACCCG 59.901 55.000 0.00 0.00 0.00 5.28
1910 6096 0.523072 CATTGACCACCCGAGCTTTG 59.477 55.000 0.00 0.00 0.00 2.77
1924 6110 0.960861 GCTTTGGAGGGAAAGGACCG 60.961 60.000 0.00 0.00 34.11 4.79
1931 6117 1.208165 AGGGAAAGGACCGGATTGCT 61.208 55.000 9.46 0.00 0.00 3.91
1936 6122 3.606687 GAAAGGACCGGATTGCTCTTTA 58.393 45.455 9.46 0.00 0.00 1.85
1937 6123 3.933861 AAGGACCGGATTGCTCTTTAT 57.066 42.857 9.46 0.00 0.00 1.40
1938 6124 3.933861 AGGACCGGATTGCTCTTTATT 57.066 42.857 9.46 0.00 0.00 1.40
1939 6125 3.809905 AGGACCGGATTGCTCTTTATTC 58.190 45.455 9.46 0.00 0.00 1.75
1944 6163 4.273480 ACCGGATTGCTCTTTATTCAATCG 59.727 41.667 9.46 4.52 44.09 3.34
1951 6170 5.487433 TGCTCTTTATTCAATCGAGTCCAA 58.513 37.500 0.00 0.00 0.00 3.53
1976 6195 4.503123 GGCTTTATTGCAAAGTTCTTGGGT 60.503 41.667 1.71 0.00 34.04 4.51
1979 6198 6.292865 GCTTTATTGCAAAGTTCTTGGGTTTC 60.293 38.462 1.71 0.00 0.00 2.78
1980 6199 4.751767 ATTGCAAAGTTCTTGGGTTTCA 57.248 36.364 1.71 0.00 0.00 2.69
1991 6210 8.887036 AGTTCTTGGGTTTCATTGTAATTTTC 57.113 30.769 0.00 0.00 0.00 2.29
2012 6231 3.977999 TCTTTTCCTACTTGGTCCAAGGA 59.022 43.478 30.76 24.14 44.81 3.36
2054 6273 3.506059 ATTCGCCCTCATCTCGCCG 62.506 63.158 0.00 0.00 0.00 6.46
2086 6305 0.976073 GGTTGGGGTGATCGGAGAGA 60.976 60.000 0.00 0.00 43.63 3.10
2087 6306 1.123928 GTTGGGGTGATCGGAGAGAT 58.876 55.000 0.00 0.00 43.63 2.75
2088 6307 1.123077 TTGGGGTGATCGGAGAGATG 58.877 55.000 0.00 0.00 43.63 2.90
2089 6308 0.261696 TGGGGTGATCGGAGAGATGA 59.738 55.000 0.00 0.00 43.63 2.92
2090 6309 0.676736 GGGGTGATCGGAGAGATGAC 59.323 60.000 0.00 0.00 43.63 3.06
2091 6310 1.403814 GGGTGATCGGAGAGATGACA 58.596 55.000 0.77 0.00 43.89 3.58
2092 6311 1.967066 GGGTGATCGGAGAGATGACAT 59.033 52.381 0.00 0.00 43.89 3.06
2093 6312 2.366916 GGGTGATCGGAGAGATGACATT 59.633 50.000 0.77 0.00 43.89 2.71
2094 6313 3.181461 GGGTGATCGGAGAGATGACATTT 60.181 47.826 0.77 0.00 43.89 2.32
2095 6314 4.446371 GGTGATCGGAGAGATGACATTTT 58.554 43.478 0.77 0.00 43.89 1.82
2096 6315 5.453339 GGGTGATCGGAGAGATGACATTTTA 60.453 44.000 0.77 0.00 43.89 1.52
2097 6316 6.226787 GGTGATCGGAGAGATGACATTTTAT 58.773 40.000 0.77 0.00 43.89 1.40
2098 6317 6.708054 GGTGATCGGAGAGATGACATTTTATT 59.292 38.462 0.77 0.00 43.89 1.40
2099 6318 7.872993 GGTGATCGGAGAGATGACATTTTATTA 59.127 37.037 0.77 0.00 43.89 0.98
2100 6319 9.261180 GTGATCGGAGAGATGACATTTTATTAA 57.739 33.333 0.00 0.00 42.07 1.40
2103 6322 9.784531 ATCGGAGAGATGACATTTTATTAATGT 57.215 29.630 3.00 3.00 43.63 2.71
2222 6441 7.692908 TTGTCATGCTAAACTTTAAAACTGC 57.307 32.000 0.00 0.00 0.00 4.40
2223 6442 6.800543 TGTCATGCTAAACTTTAAAACTGCA 58.199 32.000 0.00 0.00 0.00 4.41
2224 6443 7.261325 TGTCATGCTAAACTTTAAAACTGCAA 58.739 30.769 0.00 0.00 32.88 4.08
2225 6444 7.925483 TGTCATGCTAAACTTTAAAACTGCAAT 59.075 29.630 0.00 0.00 32.88 3.56
2226 6445 8.427774 GTCATGCTAAACTTTAAAACTGCAATC 58.572 33.333 0.00 0.00 32.88 2.67
2227 6446 7.598493 TCATGCTAAACTTTAAAACTGCAATCC 59.402 33.333 0.00 0.00 32.88 3.01
2228 6447 7.049799 TGCTAAACTTTAAAACTGCAATCCT 57.950 32.000 0.00 0.00 0.00 3.24
2229 6448 7.145323 TGCTAAACTTTAAAACTGCAATCCTC 58.855 34.615 0.00 0.00 0.00 3.71
2230 6449 6.305638 GCTAAACTTTAAAACTGCAATCCTCG 59.694 38.462 0.00 0.00 0.00 4.63
2231 6450 4.766404 ACTTTAAAACTGCAATCCTCGG 57.234 40.909 0.00 0.00 0.00 4.63
2232 6451 3.506067 ACTTTAAAACTGCAATCCTCGGG 59.494 43.478 0.00 0.00 0.00 5.14
2233 6452 2.871096 TAAAACTGCAATCCTCGGGT 57.129 45.000 0.00 0.00 0.00 5.28
2234 6453 1.995376 AAAACTGCAATCCTCGGGTT 58.005 45.000 0.00 0.00 0.00 4.11
2235 6454 2.871096 AAACTGCAATCCTCGGGTTA 57.129 45.000 0.00 0.00 0.00 2.85
2236 6455 2.871096 AACTGCAATCCTCGGGTTAA 57.129 45.000 0.00 0.00 0.00 2.01
2237 6456 2.871096 ACTGCAATCCTCGGGTTAAA 57.129 45.000 0.00 0.00 0.00 1.52
2238 6457 3.149005 ACTGCAATCCTCGGGTTAAAA 57.851 42.857 0.00 0.00 0.00 1.52
2239 6458 3.492337 ACTGCAATCCTCGGGTTAAAAA 58.508 40.909 0.00 0.00 0.00 1.94
2240 6459 4.086457 ACTGCAATCCTCGGGTTAAAAAT 58.914 39.130 0.00 0.00 0.00 1.82
2241 6460 4.082245 ACTGCAATCCTCGGGTTAAAAATG 60.082 41.667 0.00 0.00 0.00 2.32
2242 6461 3.186909 GCAATCCTCGGGTTAAAAATGC 58.813 45.455 0.00 0.00 0.00 3.56
2243 6462 3.780902 CAATCCTCGGGTTAAAAATGCC 58.219 45.455 0.00 0.00 0.00 4.40
2244 6463 2.588464 TCCTCGGGTTAAAAATGCCA 57.412 45.000 0.00 0.00 0.00 4.92
2245 6464 3.094484 TCCTCGGGTTAAAAATGCCAT 57.906 42.857 0.00 0.00 0.00 4.40
2246 6465 2.757868 TCCTCGGGTTAAAAATGCCATG 59.242 45.455 0.00 0.00 0.00 3.66
2247 6466 2.757868 CCTCGGGTTAAAAATGCCATGA 59.242 45.455 0.00 0.00 0.00 3.07
2248 6467 3.194542 CCTCGGGTTAAAAATGCCATGAA 59.805 43.478 0.00 0.00 0.00 2.57
2249 6468 4.322349 CCTCGGGTTAAAAATGCCATGAAA 60.322 41.667 0.00 0.00 0.00 2.69
2250 6469 5.215252 TCGGGTTAAAAATGCCATGAAAA 57.785 34.783 0.00 0.00 0.00 2.29
2251 6470 5.611374 TCGGGTTAAAAATGCCATGAAAAA 58.389 33.333 0.00 0.00 0.00 1.94
2285 6504 9.485206 AATCTATAAATTGAGAAAATGCCATGC 57.515 29.630 0.00 0.00 0.00 4.06
2286 6505 8.241497 TCTATAAATTGAGAAAATGCCATGCT 57.759 30.769 0.00 0.00 0.00 3.79
2287 6506 8.698210 TCTATAAATTGAGAAAATGCCATGCTT 58.302 29.630 0.00 0.00 0.00 3.91
2288 6507 9.321562 CTATAAATTGAGAAAATGCCATGCTTT 57.678 29.630 0.00 0.00 0.00 3.51
2289 6508 5.873179 AATTGAGAAAATGCCATGCTTTG 57.127 34.783 0.00 0.00 0.00 2.77
2290 6509 4.603989 TTGAGAAAATGCCATGCTTTGA 57.396 36.364 0.00 0.00 0.00 2.69
2291 6510 4.603989 TGAGAAAATGCCATGCTTTGAA 57.396 36.364 0.00 0.00 0.00 2.69
2292 6511 4.958509 TGAGAAAATGCCATGCTTTGAAA 58.041 34.783 0.00 0.00 0.00 2.69
2293 6512 5.366460 TGAGAAAATGCCATGCTTTGAAAA 58.634 33.333 0.00 0.00 0.00 2.29
2294 6513 5.821470 TGAGAAAATGCCATGCTTTGAAAAA 59.179 32.000 0.00 0.00 0.00 1.94
2309 6528 2.642700 AAAAATTGCCGCGCGACT 59.357 50.000 34.63 9.64 0.00 4.18
2310 6529 1.007849 AAAAATTGCCGCGCGACTT 60.008 47.368 34.63 15.50 0.00 3.01
2311 6530 0.596341 AAAAATTGCCGCGCGACTTT 60.596 45.000 34.63 20.35 0.00 2.66
2312 6531 0.238817 AAAATTGCCGCGCGACTTTA 59.761 45.000 34.63 10.19 0.00 1.85
2313 6532 0.450184 AAATTGCCGCGCGACTTTAT 59.550 45.000 34.63 12.24 0.00 1.40
2314 6533 1.292061 AATTGCCGCGCGACTTTATA 58.708 45.000 34.63 9.27 0.00 0.98
2315 6534 1.292061 ATTGCCGCGCGACTTTATAA 58.708 45.000 34.63 10.22 0.00 0.98
2316 6535 1.077123 TTGCCGCGCGACTTTATAAA 58.923 45.000 34.63 5.66 0.00 1.40
2317 6536 1.077123 TGCCGCGCGACTTTATAAAA 58.923 45.000 34.63 0.00 0.00 1.52
2318 6537 1.666700 TGCCGCGCGACTTTATAAAAT 59.333 42.857 34.63 0.00 0.00 1.82
2319 6538 2.096174 TGCCGCGCGACTTTATAAAATT 59.904 40.909 34.63 0.00 0.00 1.82
2320 6539 2.462565 GCCGCGCGACTTTATAAAATTG 59.537 45.455 34.63 10.18 0.00 2.32
2321 6540 3.676540 CCGCGCGACTTTATAAAATTGT 58.323 40.909 34.63 0.00 0.00 2.71
2322 6541 3.717404 CCGCGCGACTTTATAAAATTGTC 59.283 43.478 34.63 3.14 0.00 3.18
2323 6542 4.327845 CGCGCGACTTTATAAAATTGTCA 58.672 39.130 28.94 0.00 0.00 3.58
2324 6543 4.961551 CGCGCGACTTTATAAAATTGTCAT 59.038 37.500 28.94 0.00 0.00 3.06
2325 6544 5.112052 CGCGCGACTTTATAAAATTGTCATC 59.888 40.000 28.94 6.27 0.00 2.92
2326 6545 6.192360 GCGCGACTTTATAAAATTGTCATCT 58.808 36.000 12.10 0.00 0.00 2.90
2327 6546 6.687105 GCGCGACTTTATAAAATTGTCATCTT 59.313 34.615 12.10 0.00 0.00 2.40
2328 6547 7.097409 GCGCGACTTTATAAAATTGTCATCTTC 60.097 37.037 12.10 0.00 0.00 2.87
2329 6548 8.116753 CGCGACTTTATAAAATTGTCATCTTCT 58.883 33.333 0.00 0.00 0.00 2.85
2363 6582 7.999450 TTTTTATCTAGGTAAGCCCGAAAAA 57.001 32.000 0.00 0.00 38.74 1.94
2364 6583 6.990341 TTTATCTAGGTAAGCCCGAAAAAC 57.010 37.500 0.00 0.00 38.74 2.43
2365 6584 4.563140 ATCTAGGTAAGCCCGAAAAACA 57.437 40.909 0.00 0.00 38.74 2.83
2366 6585 4.354893 TCTAGGTAAGCCCGAAAAACAA 57.645 40.909 0.00 0.00 38.74 2.83
2367 6586 4.716794 TCTAGGTAAGCCCGAAAAACAAA 58.283 39.130 0.00 0.00 38.74 2.83
2368 6587 3.720949 AGGTAAGCCCGAAAAACAAAC 57.279 42.857 0.00 0.00 38.74 2.93
2369 6588 3.293337 AGGTAAGCCCGAAAAACAAACT 58.707 40.909 0.00 0.00 38.74 2.66
2370 6589 3.067601 AGGTAAGCCCGAAAAACAAACTG 59.932 43.478 0.00 0.00 38.74 3.16
2371 6590 3.181484 GGTAAGCCCGAAAAACAAACTGT 60.181 43.478 0.00 0.00 0.00 3.55
2372 6591 2.863401 AGCCCGAAAAACAAACTGTC 57.137 45.000 0.00 0.00 0.00 3.51
2373 6592 2.096248 AGCCCGAAAAACAAACTGTCA 58.904 42.857 0.00 0.00 0.00 3.58
2374 6593 2.693074 AGCCCGAAAAACAAACTGTCAT 59.307 40.909 0.00 0.00 0.00 3.06
2375 6594 2.794350 GCCCGAAAAACAAACTGTCATG 59.206 45.455 0.00 0.00 0.00 3.07
2376 6595 2.794350 CCCGAAAAACAAACTGTCATGC 59.206 45.455 0.00 0.00 0.00 4.06
2377 6596 2.794350 CCGAAAAACAAACTGTCATGCC 59.206 45.455 0.00 0.00 0.00 4.40
2378 6597 3.443037 CGAAAAACAAACTGTCATGCCA 58.557 40.909 0.00 0.00 0.00 4.92
2379 6598 4.050553 CGAAAAACAAACTGTCATGCCAT 58.949 39.130 0.00 0.00 0.00 4.40
2380 6599 4.507388 CGAAAAACAAACTGTCATGCCATT 59.493 37.500 0.00 0.00 0.00 3.16
2381 6600 5.689514 CGAAAAACAAACTGTCATGCCATTA 59.310 36.000 0.00 0.00 0.00 1.90
2382 6601 6.199908 CGAAAAACAAACTGTCATGCCATTAA 59.800 34.615 0.00 0.00 0.00 1.40
2383 6602 7.254252 CGAAAAACAAACTGTCATGCCATTAAA 60.254 33.333 0.00 0.00 0.00 1.52
2384 6603 7.856145 AAAACAAACTGTCATGCCATTAAAA 57.144 28.000 0.00 0.00 0.00 1.52
2385 6604 7.856145 AAACAAACTGTCATGCCATTAAAAA 57.144 28.000 0.00 0.00 0.00 1.94
2386 6605 8.449251 AAACAAACTGTCATGCCATTAAAAAT 57.551 26.923 0.00 0.00 0.00 1.82
2387 6606 9.553064 AAACAAACTGTCATGCCATTAAAAATA 57.447 25.926 0.00 0.00 0.00 1.40
2388 6607 9.723601 AACAAACTGTCATGCCATTAAAAATAT 57.276 25.926 0.00 0.00 0.00 1.28
2389 6608 9.153721 ACAAACTGTCATGCCATTAAAAATATG 57.846 29.630 0.00 0.00 0.00 1.78
2390 6609 7.775397 AACTGTCATGCCATTAAAAATATGC 57.225 32.000 0.00 0.00 0.00 3.14
2391 6610 6.282930 ACTGTCATGCCATTAAAAATATGCC 58.717 36.000 0.00 0.00 0.00 4.40
2392 6611 6.127111 ACTGTCATGCCATTAAAAATATGCCA 60.127 34.615 0.00 0.00 0.00 4.92
2393 6612 6.828788 TGTCATGCCATTAAAAATATGCCAT 58.171 32.000 0.00 0.00 0.00 4.40
2394 6613 6.930164 TGTCATGCCATTAAAAATATGCCATC 59.070 34.615 0.00 0.00 0.00 3.51
2395 6614 6.369615 GTCATGCCATTAAAAATATGCCATCC 59.630 38.462 0.00 0.00 0.00 3.51
2396 6615 6.270463 TCATGCCATTAAAAATATGCCATCCT 59.730 34.615 0.00 0.00 0.00 3.24
2397 6616 7.454066 TCATGCCATTAAAAATATGCCATCCTA 59.546 33.333 0.00 0.00 0.00 2.94
2398 6617 7.795534 TGCCATTAAAAATATGCCATCCTAT 57.204 32.000 0.00 0.00 0.00 2.57
2399 6618 8.204903 TGCCATTAAAAATATGCCATCCTATT 57.795 30.769 0.00 0.00 0.00 1.73
2400 6619 8.658619 TGCCATTAAAAATATGCCATCCTATTT 58.341 29.630 0.00 0.00 0.00 1.40
2401 6620 8.938906 GCCATTAAAAATATGCCATCCTATTTG 58.061 33.333 0.00 0.00 30.13 2.32
2438 6657 8.776376 TCCATTCTCTCAAAAATTAAAATGCC 57.224 30.769 0.00 0.00 0.00 4.40
2439 6658 8.373981 TCCATTCTCTCAAAAATTAAAATGCCA 58.626 29.630 0.00 0.00 0.00 4.92
2440 6659 9.169592 CCATTCTCTCAAAAATTAAAATGCCAT 57.830 29.630 0.00 0.00 0.00 4.40
2442 6661 8.776376 TTCTCTCAAAAATTAAAATGCCATCC 57.224 30.769 0.00 0.00 0.00 3.51
2443 6662 8.137745 TCTCTCAAAAATTAAAATGCCATCCT 57.862 30.769 0.00 0.00 0.00 3.24
2444 6663 9.253832 TCTCTCAAAAATTAAAATGCCATCCTA 57.746 29.630 0.00 0.00 0.00 2.94
2496 6715 6.884096 TTAAATAAAAATGCCATGCACTCG 57.116 33.333 0.00 0.00 43.04 4.18
2497 6716 2.937469 TAAAAATGCCATGCACTCGG 57.063 45.000 0.00 0.00 43.04 4.63
2498 6717 1.255882 AAAAATGCCATGCACTCGGA 58.744 45.000 2.87 0.00 43.04 4.55
2499 6718 1.255882 AAAATGCCATGCACTCGGAA 58.744 45.000 2.87 0.00 43.04 4.30
2500 6719 1.477553 AAATGCCATGCACTCGGAAT 58.522 45.000 2.87 0.00 43.04 3.01
2501 6720 2.346766 AATGCCATGCACTCGGAATA 57.653 45.000 2.87 0.00 43.04 1.75
2502 6721 2.346766 ATGCCATGCACTCGGAATAA 57.653 45.000 2.87 0.00 43.04 1.40
2503 6722 2.121291 TGCCATGCACTCGGAATAAA 57.879 45.000 2.87 0.00 31.71 1.40
2504 6723 2.441410 TGCCATGCACTCGGAATAAAA 58.559 42.857 2.87 0.00 31.71 1.52
2505 6724 2.822561 TGCCATGCACTCGGAATAAAAA 59.177 40.909 2.87 0.00 31.71 1.94
2506 6725 3.119531 TGCCATGCACTCGGAATAAAAAG 60.120 43.478 2.87 0.00 31.71 2.27
2507 6726 3.119495 GCCATGCACTCGGAATAAAAAGT 60.119 43.478 2.87 0.00 0.00 2.66
2508 6727 4.095782 GCCATGCACTCGGAATAAAAAGTA 59.904 41.667 2.87 0.00 0.00 2.24
2509 6728 5.569413 CCATGCACTCGGAATAAAAAGTAC 58.431 41.667 0.00 0.00 0.00 2.73
2510 6729 5.448632 CCATGCACTCGGAATAAAAAGTACC 60.449 44.000 0.00 0.00 0.00 3.34
2511 6730 4.643463 TGCACTCGGAATAAAAAGTACCA 58.357 39.130 0.00 0.00 0.00 3.25
2512 6731 5.250200 TGCACTCGGAATAAAAAGTACCAT 58.750 37.500 0.00 0.00 0.00 3.55
2513 6732 5.123186 TGCACTCGGAATAAAAAGTACCATG 59.877 40.000 0.00 0.00 0.00 3.66
2514 6733 5.569413 CACTCGGAATAAAAAGTACCATGC 58.431 41.667 0.00 0.00 0.00 4.06
2515 6734 4.638865 ACTCGGAATAAAAAGTACCATGCC 59.361 41.667 0.00 0.00 0.00 4.40
2516 6735 4.590918 TCGGAATAAAAAGTACCATGCCA 58.409 39.130 0.00 0.00 0.00 4.92
2517 6736 5.010933 TCGGAATAAAAAGTACCATGCCAA 58.989 37.500 0.00 0.00 0.00 4.52
2518 6737 5.654650 TCGGAATAAAAAGTACCATGCCAAT 59.345 36.000 0.00 0.00 0.00 3.16
2519 6738 6.829298 TCGGAATAAAAAGTACCATGCCAATA 59.171 34.615 0.00 0.00 0.00 1.90
2520 6739 7.339721 TCGGAATAAAAAGTACCATGCCAATAA 59.660 33.333 0.00 0.00 0.00 1.40
2521 6740 7.976734 CGGAATAAAAAGTACCATGCCAATAAA 59.023 33.333 0.00 0.00 0.00 1.40
2522 6741 9.660180 GGAATAAAAAGTACCATGCCAATAAAA 57.340 29.630 0.00 0.00 0.00 1.52
2534 6753 9.737844 ACCATGCCAATAAAAATAAAAATGTCT 57.262 25.926 0.00 0.00 0.00 3.41
2574 6793 9.791801 AAAAATGCCATCCTAACTTTTTAACAT 57.208 25.926 0.00 0.00 0.00 2.71
2575 6794 9.791801 AAAATGCCATCCTAACTTTTTAACATT 57.208 25.926 0.00 0.00 0.00 2.71
2576 6795 9.435688 AAATGCCATCCTAACTTTTTAACATTC 57.564 29.630 0.00 0.00 0.00 2.67
2577 6796 7.531857 TGCCATCCTAACTTTTTAACATTCA 57.468 32.000 0.00 0.00 0.00 2.57
2578 6797 7.957002 TGCCATCCTAACTTTTTAACATTCAA 58.043 30.769 0.00 0.00 0.00 2.69
2579 6798 8.424918 TGCCATCCTAACTTTTTAACATTCAAA 58.575 29.630 0.00 0.00 0.00 2.69
2580 6799 9.267084 GCCATCCTAACTTTTTAACATTCAAAA 57.733 29.630 0.00 0.00 0.00 2.44
2644 6863 9.540431 AAAAAGTTCACAAATTTCGAAAATGTG 57.460 25.926 32.94 32.94 39.31 3.21
2645 6864 6.272698 AGTTCACAAATTTCGAAAATGTGC 57.727 33.333 33.43 26.08 38.55 4.57
2646 6865 5.809562 AGTTCACAAATTTCGAAAATGTGCA 59.190 32.000 33.43 27.27 38.55 4.57
2647 6866 6.479660 AGTTCACAAATTTCGAAAATGTGCAT 59.520 30.769 33.43 24.73 38.55 3.96
2648 6867 6.450845 TCACAAATTTCGAAAATGTGCATC 57.549 33.333 33.43 0.00 38.55 3.91
2649 6868 5.116831 TCACAAATTTCGAAAATGTGCATCG 59.883 36.000 33.43 21.17 38.55 3.84
2650 6869 4.385447 ACAAATTTCGAAAATGTGCATCGG 59.615 37.500 23.75 6.64 37.20 4.18
2651 6870 3.848272 ATTTCGAAAATGTGCATCGGT 57.152 38.095 15.66 0.00 37.20 4.69
2652 6871 3.634568 TTTCGAAAATGTGCATCGGTT 57.365 38.095 8.44 0.00 37.20 4.44
2653 6872 3.634568 TTCGAAAATGTGCATCGGTTT 57.365 38.095 6.80 0.00 37.20 3.27
2654 6873 4.750952 TTCGAAAATGTGCATCGGTTTA 57.249 36.364 6.80 0.00 37.20 2.01
2655 6874 4.750952 TCGAAAATGTGCATCGGTTTAA 57.249 36.364 6.80 0.00 37.20 1.52
2656 6875 5.109662 TCGAAAATGTGCATCGGTTTAAA 57.890 34.783 6.80 0.00 37.20 1.52
2657 6876 5.520632 TCGAAAATGTGCATCGGTTTAAAA 58.479 33.333 6.80 0.00 37.20 1.52
2658 6877 5.977725 TCGAAAATGTGCATCGGTTTAAAAA 59.022 32.000 6.80 0.00 37.20 1.94
2693 6912 8.422973 CTGAAAGTGTTCATGGATTTTGAAAA 57.577 30.769 0.00 0.00 42.85 2.29
2694 6913 8.783833 TGAAAGTGTTCATGGATTTTGAAAAA 57.216 26.923 0.00 0.00 38.88 1.94
2695 6914 9.393512 TGAAAGTGTTCATGGATTTTGAAAAAT 57.606 25.926 0.68 0.68 38.88 1.82
2696 6915 9.654417 GAAAGTGTTCATGGATTTTGAAAAATG 57.346 29.630 5.76 0.00 35.00 2.32
2697 6916 8.735692 AAGTGTTCATGGATTTTGAAAAATGT 57.264 26.923 5.76 0.00 38.64 2.71
2698 6917 8.735692 AGTGTTCATGGATTTTGAAAAATGTT 57.264 26.923 5.76 0.00 38.64 2.71
2699 6918 9.176460 AGTGTTCATGGATTTTGAAAAATGTTT 57.824 25.926 5.76 0.00 38.64 2.83
2700 6919 9.786105 GTGTTCATGGATTTTGAAAAATGTTTT 57.214 25.926 5.76 0.00 38.64 2.43
2739 6958 9.933723 ACAATTAAGAATTTGAAGAAGATTGGG 57.066 29.630 0.00 0.00 0.00 4.12
2780 6999 9.942850 ATTTCGAAAAATAAAGATCATGGGTTT 57.057 25.926 15.66 0.00 33.27 3.27
2781 7000 8.755696 TTCGAAAAATAAAGATCATGGGTTTG 57.244 30.769 0.00 0.00 0.00 2.93
2782 7001 8.116651 TCGAAAAATAAAGATCATGGGTTTGA 57.883 30.769 0.00 0.00 0.00 2.69
2783 7002 8.026607 TCGAAAAATAAAGATCATGGGTTTGAC 58.973 33.333 0.00 0.00 0.00 3.18
2784 7003 7.275560 CGAAAAATAAAGATCATGGGTTTGACC 59.724 37.037 0.00 0.00 37.60 4.02
2785 7004 7.552050 AAAATAAAGATCATGGGTTTGACCA 57.448 32.000 0.00 0.00 46.24 4.02
2786 7005 7.552050 AAATAAAGATCATGGGTTTGACCAA 57.448 32.000 0.00 0.00 45.13 3.67
2787 7006 7.552050 AATAAAGATCATGGGTTTGACCAAA 57.448 32.000 0.00 0.00 45.13 3.28
2788 7007 5.885449 AAAGATCATGGGTTTGACCAAAA 57.115 34.783 0.00 0.00 45.13 2.44
2789 7008 4.871933 AGATCATGGGTTTGACCAAAAC 57.128 40.909 2.08 2.08 45.13 2.43
2790 7009 4.482990 AGATCATGGGTTTGACCAAAACT 58.517 39.130 9.98 0.00 46.27 2.66
2796 7015 4.664150 GGGTTTGACCAAAACTCATTGA 57.336 40.909 9.98 0.00 46.84 2.57
2797 7016 5.213891 GGGTTTGACCAAAACTCATTGAT 57.786 39.130 9.98 0.00 46.84 2.57
2798 7017 5.610398 GGGTTTGACCAAAACTCATTGATT 58.390 37.500 9.98 0.00 46.84 2.57
2799 7018 6.054941 GGGTTTGACCAAAACTCATTGATTT 58.945 36.000 9.98 0.00 46.84 2.17
2800 7019 6.542005 GGGTTTGACCAAAACTCATTGATTTT 59.458 34.615 9.98 0.00 46.84 1.82
2801 7020 7.408910 GGTTTGACCAAAACTCATTGATTTTG 58.591 34.615 17.88 17.88 46.27 2.44
2810 7029 9.654417 CAAAACTCATTGATTTTGGAAAATGTC 57.346 29.630 17.45 0.00 40.53 3.06
2825 7044 7.742556 GGAAAATGTCCATGGATTTGAAAAA 57.257 32.000 19.62 0.00 46.97 1.94
2826 7045 7.809665 GGAAAATGTCCATGGATTTGAAAAAG 58.190 34.615 19.62 0.00 46.97 2.27
2827 7046 7.094677 GGAAAATGTCCATGGATTTGAAAAAGG 60.095 37.037 19.62 0.00 46.97 3.11
2828 7047 6.438186 AATGTCCATGGATTTGAAAAAGGT 57.562 33.333 19.62 0.00 0.00 3.50
2829 7048 5.885449 TGTCCATGGATTTGAAAAAGGTT 57.115 34.783 19.62 0.00 0.00 3.50
2830 7049 5.852827 TGTCCATGGATTTGAAAAAGGTTC 58.147 37.500 19.62 0.00 0.00 3.62
2831 7050 4.923281 GTCCATGGATTTGAAAAAGGTTCG 59.077 41.667 19.62 0.00 0.00 3.95
2832 7051 3.679502 CCATGGATTTGAAAAAGGTTCGC 59.320 43.478 5.56 0.00 0.00 4.70
2833 7052 3.006659 TGGATTTGAAAAAGGTTCGCG 57.993 42.857 0.00 0.00 0.00 5.87
2834 7053 2.287909 TGGATTTGAAAAAGGTTCGCGG 60.288 45.455 6.13 0.00 0.00 6.46
2835 7054 2.030628 GGATTTGAAAAAGGTTCGCGGA 60.031 45.455 6.13 0.00 0.00 5.54
2836 7055 3.551250 GGATTTGAAAAAGGTTCGCGGAA 60.551 43.478 6.13 0.00 0.00 4.30
2837 7056 3.719173 TTTGAAAAAGGTTCGCGGAAT 57.281 38.095 6.13 0.00 0.00 3.01
2838 7057 3.719173 TTGAAAAAGGTTCGCGGAATT 57.281 38.095 6.13 0.00 0.00 2.17
2839 7058 3.719173 TGAAAAAGGTTCGCGGAATTT 57.281 38.095 6.13 0.00 0.00 1.82
2840 7059 3.376540 TGAAAAAGGTTCGCGGAATTTG 58.623 40.909 6.13 0.00 0.00 2.32
2841 7060 3.066900 TGAAAAAGGTTCGCGGAATTTGA 59.933 39.130 6.13 0.00 0.00 2.69
2842 7061 3.934457 AAAAGGTTCGCGGAATTTGAT 57.066 38.095 6.13 0.00 0.00 2.57
2843 7062 5.048643 TGAAAAAGGTTCGCGGAATTTGATA 60.049 36.000 6.13 0.00 0.00 2.15
2844 7063 5.576447 AAAAGGTTCGCGGAATTTGATAT 57.424 34.783 6.13 0.00 0.00 1.63
2845 7064 6.687081 AAAAGGTTCGCGGAATTTGATATA 57.313 33.333 6.13 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 232 0.247736 AGCTTCTCGGCTTCGTCAAT 59.752 50.000 0.00 0.00 39.86 2.57
416 418 1.626321 TCGACAACCATTAGCTCCCAA 59.374 47.619 0.00 0.00 0.00 4.12
587 620 9.348476 TGTAACCTGCATATAAATAGCAATCAA 57.652 29.630 0.00 0.00 37.89 2.57
951 1005 1.940883 GCGGGTCGTGGTAGATGTGA 61.941 60.000 0.00 0.00 0.00 3.58
1347 5519 4.430423 CCGTTGCACGCGAAGAGC 62.430 66.667 15.93 11.97 40.91 4.09
1356 5528 3.579626 GAAGAGCACGCCGTTGCAC 62.580 63.158 12.72 7.48 45.62 4.57
1449 5621 2.121963 ACCTTGGTCTGGAGCCCA 60.122 61.111 0.00 0.00 0.00 5.36
1527 5699 1.445716 GCTGGAGCATGAGCCACATC 61.446 60.000 0.00 0.00 43.56 3.06
1652 5824 5.418310 AAAGTACTTGTTGTCAATGACCG 57.582 39.130 9.34 0.00 32.82 4.79
1665 5837 1.076332 CGGAAGGGCGAAAGTACTTG 58.924 55.000 9.34 0.00 31.26 3.16
1830 6002 2.223829 CCAAGGCTAGATGTCGTGGTAG 60.224 54.545 0.00 0.00 43.40 3.18
1835 6007 1.115467 CCTCCAAGGCTAGATGTCGT 58.885 55.000 0.00 0.00 0.00 4.34
1841 6013 3.144894 AGATAATCCCCTCCAAGGCTAGA 59.855 47.826 0.00 0.00 32.73 2.43
1866 6038 0.924090 GCCACGACGATGATCTTGTC 59.076 55.000 0.00 0.00 35.23 3.18
1877 6049 0.718904 TCAATGAAATCGCCACGACG 59.281 50.000 0.00 0.00 39.18 5.12
1878 6050 1.202031 GGTCAATGAAATCGCCACGAC 60.202 52.381 0.00 0.00 39.18 4.34
1879 6051 1.083489 GGTCAATGAAATCGCCACGA 58.917 50.000 0.00 0.00 41.13 4.35
1881 6053 1.135402 GGTGGTCAATGAAATCGCCAC 60.135 52.381 10.45 10.45 39.75 5.01
1882 6054 1.173043 GGTGGTCAATGAAATCGCCA 58.827 50.000 7.05 0.00 0.00 5.69
1883 6055 0.455815 GGGTGGTCAATGAAATCGCC 59.544 55.000 4.30 4.30 0.00 5.54
1895 6081 1.376037 CTCCAAAGCTCGGGTGGTC 60.376 63.158 2.46 0.00 33.88 4.02
1903 6089 1.614583 GGTCCTTTCCCTCCAAAGCTC 60.615 57.143 0.00 0.00 32.75 4.09
1910 6096 0.107165 CAATCCGGTCCTTTCCCTCC 60.107 60.000 0.00 0.00 0.00 4.30
1924 6110 6.293135 GGACTCGATTGAATAAAGAGCAATCC 60.293 42.308 0.00 2.73 42.91 3.01
1931 6117 5.428253 CCCTTGGACTCGATTGAATAAAGA 58.572 41.667 0.00 0.00 0.00 2.52
1936 6122 1.561542 AGCCCTTGGACTCGATTGAAT 59.438 47.619 0.00 0.00 0.00 2.57
1937 6123 0.984230 AGCCCTTGGACTCGATTGAA 59.016 50.000 0.00 0.00 0.00 2.69
1938 6124 0.984230 AAGCCCTTGGACTCGATTGA 59.016 50.000 0.00 0.00 0.00 2.57
1939 6125 1.826385 AAAGCCCTTGGACTCGATTG 58.174 50.000 0.00 0.00 0.00 2.67
1944 6163 2.446435 TGCAATAAAGCCCTTGGACTC 58.554 47.619 0.00 0.00 0.00 3.36
1951 6170 4.262592 CCAAGAACTTTGCAATAAAGCCCT 60.263 41.667 0.00 0.00 0.00 5.19
1979 6198 9.981114 ACCAAGTAGGAAAAGAAAATTACAATG 57.019 29.630 0.00 0.00 41.22 2.82
1991 6210 4.327680 CTCCTTGGACCAAGTAGGAAAAG 58.672 47.826 28.45 13.47 39.58 2.27
2012 6231 6.061441 TGTACACAAACTGAATGATTGTCCT 58.939 36.000 0.00 0.00 39.21 3.85
2013 6232 6.312399 TGTACACAAACTGAATGATTGTCC 57.688 37.500 0.00 0.00 39.21 4.02
2054 6273 1.379044 CCAACCATCCAGTCCTGCC 60.379 63.158 0.00 0.00 0.00 4.85
2055 6274 1.379044 CCCAACCATCCAGTCCTGC 60.379 63.158 0.00 0.00 0.00 4.85
2056 6275 1.304282 CCCCAACCATCCAGTCCTG 59.696 63.158 0.00 0.00 0.00 3.86
2057 6276 1.151587 ACCCCAACCATCCAGTCCT 60.152 57.895 0.00 0.00 0.00 3.85
2067 6286 0.976073 TCTCTCCGATCACCCCAACC 60.976 60.000 0.00 0.00 0.00 3.77
2196 6415 8.764287 GCAGTTTTAAAGTTTAGCATGACAATT 58.236 29.630 0.00 0.00 0.00 2.32
2197 6416 7.925483 TGCAGTTTTAAAGTTTAGCATGACAAT 59.075 29.630 0.00 0.00 0.00 2.71
2198 6417 7.261325 TGCAGTTTTAAAGTTTAGCATGACAA 58.739 30.769 0.00 0.00 0.00 3.18
2199 6418 6.800543 TGCAGTTTTAAAGTTTAGCATGACA 58.199 32.000 0.00 0.00 0.00 3.58
2200 6419 7.692908 TTGCAGTTTTAAAGTTTAGCATGAC 57.307 32.000 0.00 0.00 0.00 3.06
2201 6420 7.598493 GGATTGCAGTTTTAAAGTTTAGCATGA 59.402 33.333 0.00 0.00 0.00 3.07
2202 6421 7.599998 AGGATTGCAGTTTTAAAGTTTAGCATG 59.400 33.333 7.17 0.00 0.00 4.06
2203 6422 7.670364 AGGATTGCAGTTTTAAAGTTTAGCAT 58.330 30.769 7.17 0.39 0.00 3.79
2204 6423 7.049799 AGGATTGCAGTTTTAAAGTTTAGCA 57.950 32.000 3.17 3.17 0.00 3.49
2205 6424 6.305638 CGAGGATTGCAGTTTTAAAGTTTAGC 59.694 38.462 0.00 0.00 0.00 3.09
2206 6425 6.801862 CCGAGGATTGCAGTTTTAAAGTTTAG 59.198 38.462 0.00 0.00 0.00 1.85
2207 6426 6.294286 CCCGAGGATTGCAGTTTTAAAGTTTA 60.294 38.462 0.00 0.00 0.00 2.01
2208 6427 5.508994 CCCGAGGATTGCAGTTTTAAAGTTT 60.509 40.000 0.00 0.00 0.00 2.66
2209 6428 4.022329 CCCGAGGATTGCAGTTTTAAAGTT 60.022 41.667 0.00 0.00 0.00 2.66
2210 6429 3.506067 CCCGAGGATTGCAGTTTTAAAGT 59.494 43.478 0.00 0.00 0.00 2.66
2211 6430 3.506067 ACCCGAGGATTGCAGTTTTAAAG 59.494 43.478 0.00 0.00 0.00 1.85
2212 6431 3.492337 ACCCGAGGATTGCAGTTTTAAA 58.508 40.909 0.00 0.00 0.00 1.52
2213 6432 3.149005 ACCCGAGGATTGCAGTTTTAA 57.851 42.857 0.00 0.00 0.00 1.52
2214 6433 2.871096 ACCCGAGGATTGCAGTTTTA 57.129 45.000 0.00 0.00 0.00 1.52
2215 6434 1.995376 AACCCGAGGATTGCAGTTTT 58.005 45.000 0.00 0.00 0.00 2.43
2216 6435 2.871096 TAACCCGAGGATTGCAGTTT 57.129 45.000 0.00 0.00 0.00 2.66
2217 6436 2.871096 TTAACCCGAGGATTGCAGTT 57.129 45.000 0.00 0.00 0.00 3.16
2218 6437 2.871096 TTTAACCCGAGGATTGCAGT 57.129 45.000 0.00 0.00 0.00 4.40
2219 6438 4.423732 CATTTTTAACCCGAGGATTGCAG 58.576 43.478 0.00 0.00 0.00 4.41
2220 6439 3.367910 GCATTTTTAACCCGAGGATTGCA 60.368 43.478 0.00 0.00 0.00 4.08
2221 6440 3.186909 GCATTTTTAACCCGAGGATTGC 58.813 45.455 0.00 0.00 0.00 3.56
2222 6441 3.194542 TGGCATTTTTAACCCGAGGATTG 59.805 43.478 0.00 0.00 0.00 2.67
2223 6442 3.436243 TGGCATTTTTAACCCGAGGATT 58.564 40.909 0.00 0.00 0.00 3.01
2224 6443 3.094484 TGGCATTTTTAACCCGAGGAT 57.906 42.857 0.00 0.00 0.00 3.24
2225 6444 2.588464 TGGCATTTTTAACCCGAGGA 57.412 45.000 0.00 0.00 0.00 3.71
2226 6445 2.757868 TCATGGCATTTTTAACCCGAGG 59.242 45.455 0.00 0.00 0.00 4.63
2227 6446 4.448537 TTCATGGCATTTTTAACCCGAG 57.551 40.909 0.00 0.00 0.00 4.63
2228 6447 4.873746 TTTCATGGCATTTTTAACCCGA 57.126 36.364 0.00 0.00 0.00 5.14
2229 6448 5.931441 TTTTTCATGGCATTTTTAACCCG 57.069 34.783 0.00 0.00 0.00 5.28
2259 6478 9.485206 GCATGGCATTTTCTCAATTTATAGATT 57.515 29.630 0.00 0.00 0.00 2.40
2260 6479 8.867097 AGCATGGCATTTTCTCAATTTATAGAT 58.133 29.630 0.00 0.00 0.00 1.98
2261 6480 8.241497 AGCATGGCATTTTCTCAATTTATAGA 57.759 30.769 0.00 0.00 0.00 1.98
2262 6481 8.882415 AAGCATGGCATTTTCTCAATTTATAG 57.118 30.769 0.00 0.00 0.00 1.31
2263 6482 9.100554 CAAAGCATGGCATTTTCTCAATTTATA 57.899 29.630 0.00 0.00 0.00 0.98
2264 6483 7.825270 TCAAAGCATGGCATTTTCTCAATTTAT 59.175 29.630 0.00 0.00 0.00 1.40
2265 6484 7.160049 TCAAAGCATGGCATTTTCTCAATTTA 58.840 30.769 0.00 0.00 0.00 1.40
2266 6485 5.998981 TCAAAGCATGGCATTTTCTCAATTT 59.001 32.000 0.00 0.00 0.00 1.82
2267 6486 5.553123 TCAAAGCATGGCATTTTCTCAATT 58.447 33.333 0.00 0.00 0.00 2.32
2268 6487 5.155278 TCAAAGCATGGCATTTTCTCAAT 57.845 34.783 0.00 0.00 0.00 2.57
2269 6488 4.603989 TCAAAGCATGGCATTTTCTCAA 57.396 36.364 0.00 0.00 0.00 3.02
2270 6489 4.603989 TTCAAAGCATGGCATTTTCTCA 57.396 36.364 0.00 0.00 0.00 3.27
2271 6490 5.927954 TTTTCAAAGCATGGCATTTTCTC 57.072 34.783 0.00 0.00 0.00 2.87
2292 6511 0.596341 AAAGTCGCGCGGCAATTTTT 60.596 45.000 37.48 24.30 0.00 1.94
2293 6512 0.238817 TAAAGTCGCGCGGCAATTTT 59.761 45.000 37.48 28.17 0.00 1.82
2294 6513 0.450184 ATAAAGTCGCGCGGCAATTT 59.550 45.000 37.48 28.89 0.00 1.82
2295 6514 1.292061 TATAAAGTCGCGCGGCAATT 58.708 45.000 37.48 30.18 0.00 2.32
2296 6515 1.292061 TTATAAAGTCGCGCGGCAAT 58.708 45.000 37.48 26.57 0.00 3.56
2297 6516 1.077123 TTTATAAAGTCGCGCGGCAA 58.923 45.000 37.48 21.68 0.00 4.52
2298 6517 1.077123 TTTTATAAAGTCGCGCGGCA 58.923 45.000 37.48 17.39 0.00 5.69
2299 6518 2.378507 ATTTTATAAAGTCGCGCGGC 57.621 45.000 29.76 29.76 0.00 6.53
2300 6519 3.676540 ACAATTTTATAAAGTCGCGCGG 58.323 40.909 31.69 11.75 0.00 6.46
2301 6520 4.327845 TGACAATTTTATAAAGTCGCGCG 58.672 39.130 26.76 26.76 32.08 6.86
2302 6521 6.192360 AGATGACAATTTTATAAAGTCGCGC 58.808 36.000 0.00 0.00 32.08 6.86
2303 6522 8.116753 AGAAGATGACAATTTTATAAAGTCGCG 58.883 33.333 0.00 0.00 32.08 5.87
2339 6558 7.447853 TGTTTTTCGGGCTTACCTAGATAAAAA 59.552 33.333 0.00 0.00 36.97 1.94
2340 6559 6.941436 TGTTTTTCGGGCTTACCTAGATAAAA 59.059 34.615 0.00 0.00 36.97 1.52
2341 6560 6.474630 TGTTTTTCGGGCTTACCTAGATAAA 58.525 36.000 0.00 0.00 36.97 1.40
2342 6561 6.052405 TGTTTTTCGGGCTTACCTAGATAA 57.948 37.500 0.00 0.00 36.97 1.75
2343 6562 5.680594 TGTTTTTCGGGCTTACCTAGATA 57.319 39.130 0.00 0.00 36.97 1.98
2344 6563 4.563140 TGTTTTTCGGGCTTACCTAGAT 57.437 40.909 0.00 0.00 36.97 1.98
2345 6564 4.354893 TTGTTTTTCGGGCTTACCTAGA 57.645 40.909 0.00 0.00 36.97 2.43
2346 6565 4.517832 AGTTTGTTTTTCGGGCTTACCTAG 59.482 41.667 0.00 0.00 36.97 3.02
2347 6566 4.276431 CAGTTTGTTTTTCGGGCTTACCTA 59.724 41.667 0.00 0.00 36.97 3.08
2348 6567 3.067601 CAGTTTGTTTTTCGGGCTTACCT 59.932 43.478 0.00 0.00 36.97 3.08
2349 6568 3.181484 ACAGTTTGTTTTTCGGGCTTACC 60.181 43.478 0.00 0.00 0.00 2.85
2350 6569 4.036567 ACAGTTTGTTTTTCGGGCTTAC 57.963 40.909 0.00 0.00 0.00 2.34
2351 6570 3.695060 TGACAGTTTGTTTTTCGGGCTTA 59.305 39.130 0.00 0.00 0.00 3.09
2352 6571 2.494073 TGACAGTTTGTTTTTCGGGCTT 59.506 40.909 0.00 0.00 0.00 4.35
2353 6572 2.096248 TGACAGTTTGTTTTTCGGGCT 58.904 42.857 0.00 0.00 0.00 5.19
2354 6573 2.570442 TGACAGTTTGTTTTTCGGGC 57.430 45.000 0.00 0.00 0.00 6.13
2355 6574 2.794350 GCATGACAGTTTGTTTTTCGGG 59.206 45.455 0.00 0.00 0.00 5.14
2356 6575 2.794350 GGCATGACAGTTTGTTTTTCGG 59.206 45.455 0.00 0.00 0.00 4.30
2357 6576 3.443037 TGGCATGACAGTTTGTTTTTCG 58.557 40.909 0.00 0.00 0.00 3.46
2358 6577 5.989551 AATGGCATGACAGTTTGTTTTTC 57.010 34.783 7.63 0.00 0.00 2.29
2359 6578 7.856145 TTTAATGGCATGACAGTTTGTTTTT 57.144 28.000 6.90 0.00 0.00 1.94
2360 6579 7.856145 TTTTAATGGCATGACAGTTTGTTTT 57.144 28.000 6.90 0.00 0.00 2.43
2361 6580 7.856145 TTTTTAATGGCATGACAGTTTGTTT 57.144 28.000 6.90 0.00 0.00 2.83
2362 6581 9.723601 ATATTTTTAATGGCATGACAGTTTGTT 57.276 25.926 6.90 0.00 0.00 2.83
2363 6582 9.153721 CATATTTTTAATGGCATGACAGTTTGT 57.846 29.630 6.90 0.00 0.00 2.83
2364 6583 8.117988 GCATATTTTTAATGGCATGACAGTTTG 58.882 33.333 6.90 0.00 0.00 2.93
2365 6584 7.280652 GGCATATTTTTAATGGCATGACAGTTT 59.719 33.333 6.90 0.00 46.21 2.66
2366 6585 6.762661 GGCATATTTTTAATGGCATGACAGTT 59.237 34.615 6.90 4.09 46.21 3.16
2367 6586 6.282930 GGCATATTTTTAATGGCATGACAGT 58.717 36.000 7.63 7.19 46.21 3.55
2368 6587 6.774354 GGCATATTTTTAATGGCATGACAG 57.226 37.500 7.63 0.00 46.21 3.51
2375 6594 8.938906 CAAATAGGATGGCATATTTTTAATGGC 58.061 33.333 0.00 2.95 46.90 4.40
2412 6631 9.218440 GGCATTTTAATTTTTGAGAGAATGGAA 57.782 29.630 0.00 0.00 0.00 3.53
2413 6632 8.373981 TGGCATTTTAATTTTTGAGAGAATGGA 58.626 29.630 0.00 0.00 0.00 3.41
2414 6633 8.550710 TGGCATTTTAATTTTTGAGAGAATGG 57.449 30.769 0.00 0.00 0.00 3.16
2416 6635 9.387257 GGATGGCATTTTAATTTTTGAGAGAAT 57.613 29.630 0.00 0.00 0.00 2.40
2417 6636 8.596293 AGGATGGCATTTTAATTTTTGAGAGAA 58.404 29.630 0.00 0.00 0.00 2.87
2418 6637 8.137745 AGGATGGCATTTTAATTTTTGAGAGA 57.862 30.769 0.00 0.00 0.00 3.10
2470 6689 9.029243 CGAGTGCATGGCATTTTTATTTAATAA 57.971 29.630 0.00 0.00 41.91 1.40
2471 6690 7.651304 CCGAGTGCATGGCATTTTTATTTAATA 59.349 33.333 0.00 0.00 41.91 0.98
2472 6691 6.479660 CCGAGTGCATGGCATTTTTATTTAAT 59.520 34.615 0.00 0.00 41.91 1.40
2473 6692 5.809562 CCGAGTGCATGGCATTTTTATTTAA 59.190 36.000 0.00 0.00 41.91 1.52
2474 6693 5.126222 TCCGAGTGCATGGCATTTTTATTTA 59.874 36.000 0.00 0.00 41.91 1.40
2475 6694 4.081752 TCCGAGTGCATGGCATTTTTATTT 60.082 37.500 0.00 0.00 41.91 1.40
2476 6695 3.446873 TCCGAGTGCATGGCATTTTTATT 59.553 39.130 0.00 0.00 41.91 1.40
2477 6696 3.023119 TCCGAGTGCATGGCATTTTTAT 58.977 40.909 0.00 0.00 41.91 1.40
2478 6697 2.441410 TCCGAGTGCATGGCATTTTTA 58.559 42.857 0.00 0.00 41.91 1.52
2479 6698 1.255882 TCCGAGTGCATGGCATTTTT 58.744 45.000 0.00 0.00 41.91 1.94
2480 6699 1.255882 TTCCGAGTGCATGGCATTTT 58.744 45.000 0.00 0.00 41.91 1.82
2481 6700 1.477553 ATTCCGAGTGCATGGCATTT 58.522 45.000 0.00 0.00 41.91 2.32
2482 6701 2.346766 TATTCCGAGTGCATGGCATT 57.653 45.000 0.00 0.00 41.91 3.56
2483 6702 2.346766 TTATTCCGAGTGCATGGCAT 57.653 45.000 0.00 0.00 41.91 4.40
2484 6703 2.121291 TTTATTCCGAGTGCATGGCA 57.879 45.000 0.00 0.00 35.60 4.92
2485 6704 3.119495 ACTTTTTATTCCGAGTGCATGGC 60.119 43.478 0.00 0.00 0.00 4.40
2486 6705 4.701956 ACTTTTTATTCCGAGTGCATGG 57.298 40.909 0.00 0.00 0.00 3.66
2487 6706 5.123186 TGGTACTTTTTATTCCGAGTGCATG 59.877 40.000 0.00 0.00 0.00 4.06
2488 6707 5.250200 TGGTACTTTTTATTCCGAGTGCAT 58.750 37.500 0.00 0.00 0.00 3.96
2489 6708 4.643463 TGGTACTTTTTATTCCGAGTGCA 58.357 39.130 0.00 0.00 0.00 4.57
2490 6709 5.569413 CATGGTACTTTTTATTCCGAGTGC 58.431 41.667 0.00 0.00 0.00 4.40
2491 6710 5.448632 GGCATGGTACTTTTTATTCCGAGTG 60.449 44.000 0.00 0.00 0.00 3.51
2492 6711 4.638865 GGCATGGTACTTTTTATTCCGAGT 59.361 41.667 0.00 0.00 0.00 4.18
2493 6712 4.638421 TGGCATGGTACTTTTTATTCCGAG 59.362 41.667 0.00 0.00 0.00 4.63
2494 6713 4.590918 TGGCATGGTACTTTTTATTCCGA 58.409 39.130 0.00 0.00 0.00 4.55
2495 6714 4.974368 TGGCATGGTACTTTTTATTCCG 57.026 40.909 0.00 0.00 0.00 4.30
2496 6715 9.660180 TTTTATTGGCATGGTACTTTTTATTCC 57.340 29.630 0.00 0.00 0.00 3.01
2508 6727 9.737844 AGACATTTTTATTTTTATTGGCATGGT 57.262 25.926 0.00 0.00 0.00 3.55
2548 6767 9.791801 ATGTTAAAAAGTTAGGATGGCATTTTT 57.208 25.926 0.00 6.09 34.99 1.94
2549 6768 9.791801 AATGTTAAAAAGTTAGGATGGCATTTT 57.208 25.926 0.00 0.00 0.00 1.82
2550 6769 9.435688 GAATGTTAAAAAGTTAGGATGGCATTT 57.564 29.630 0.00 0.00 0.00 2.32
2551 6770 8.592809 TGAATGTTAAAAAGTTAGGATGGCATT 58.407 29.630 0.00 0.00 0.00 3.56
2552 6771 8.133024 TGAATGTTAAAAAGTTAGGATGGCAT 57.867 30.769 0.00 0.00 0.00 4.40
2553 6772 7.531857 TGAATGTTAAAAAGTTAGGATGGCA 57.468 32.000 0.00 0.00 0.00 4.92
2554 6773 8.825667 TTTGAATGTTAAAAAGTTAGGATGGC 57.174 30.769 0.00 0.00 0.00 4.40
2584 6803 9.658799 TGTTATTTTTGTTTGTCAAATCTTGGA 57.341 25.926 0.40 0.00 44.15 3.53
2618 6837 9.540431 CACATTTTCGAAATTTGTGAACTTTTT 57.460 25.926 31.15 8.25 0.00 1.94
2619 6838 7.691877 GCACATTTTCGAAATTTGTGAACTTTT 59.308 29.630 35.04 11.90 0.00 2.27
2620 6839 7.148507 TGCACATTTTCGAAATTTGTGAACTTT 60.149 29.630 35.04 12.40 0.00 2.66
2621 6840 6.312426 TGCACATTTTCGAAATTTGTGAACTT 59.688 30.769 35.04 12.90 0.00 2.66
2622 6841 5.809562 TGCACATTTTCGAAATTTGTGAACT 59.190 32.000 35.04 13.40 0.00 3.01
2623 6842 6.030379 TGCACATTTTCGAAATTTGTGAAC 57.970 33.333 35.04 25.63 0.00 3.18
2624 6843 6.345644 CGATGCACATTTTCGAAATTTGTGAA 60.346 34.615 35.04 30.56 34.92 3.18
2625 6844 5.116831 CGATGCACATTTTCGAAATTTGTGA 59.883 36.000 35.04 26.12 34.92 3.58
2626 6845 5.299622 CGATGCACATTTTCGAAATTTGTG 58.700 37.500 30.81 30.81 34.92 3.33
2627 6846 4.385447 CCGATGCACATTTTCGAAATTTGT 59.615 37.500 12.12 15.05 34.92 2.83
2628 6847 4.385447 ACCGATGCACATTTTCGAAATTTG 59.615 37.500 12.12 14.42 34.92 2.32
2629 6848 4.555262 ACCGATGCACATTTTCGAAATTT 58.445 34.783 12.12 0.00 34.92 1.82
2630 6849 4.173036 ACCGATGCACATTTTCGAAATT 57.827 36.364 12.12 5.37 34.92 1.82
2631 6850 3.848272 ACCGATGCACATTTTCGAAAT 57.152 38.095 12.12 0.00 34.92 2.17
2632 6851 3.634568 AACCGATGCACATTTTCGAAA 57.365 38.095 6.47 6.47 34.92 3.46
2633 6852 3.634568 AAACCGATGCACATTTTCGAA 57.365 38.095 8.18 0.00 34.92 3.71
2634 6853 4.750952 TTAAACCGATGCACATTTTCGA 57.249 36.364 8.18 0.00 34.92 3.71
2635 6854 5.814314 TTTTAAACCGATGCACATTTTCG 57.186 34.783 0.00 0.00 0.00 3.46
2655 6874 7.087639 TGAACACTTTCAGTTTCGTGATTTTT 58.912 30.769 0.00 0.00 36.79 1.94
2656 6875 6.616947 TGAACACTTTCAGTTTCGTGATTTT 58.383 32.000 0.00 0.00 36.79 1.82
2657 6876 6.189677 TGAACACTTTCAGTTTCGTGATTT 57.810 33.333 0.00 0.00 36.79 2.17
2658 6877 5.811399 TGAACACTTTCAGTTTCGTGATT 57.189 34.783 0.00 0.00 36.79 2.57
2659 6878 5.277974 CCATGAACACTTTCAGTTTCGTGAT 60.278 40.000 15.33 0.00 45.07 3.06
2660 6879 4.035091 CCATGAACACTTTCAGTTTCGTGA 59.965 41.667 15.33 0.00 45.07 4.35
2661 6880 4.035091 TCCATGAACACTTTCAGTTTCGTG 59.965 41.667 0.00 10.74 45.07 4.35
2662 6881 4.196193 TCCATGAACACTTTCAGTTTCGT 58.804 39.130 0.00 0.00 45.07 3.85
2663 6882 4.811555 TCCATGAACACTTTCAGTTTCG 57.188 40.909 0.00 0.00 45.07 3.46
2664 6883 7.706179 TCAAAATCCATGAACACTTTCAGTTTC 59.294 33.333 0.00 0.00 45.07 2.78
2665 6884 7.555087 TCAAAATCCATGAACACTTTCAGTTT 58.445 30.769 0.00 0.00 45.07 2.66
2666 6885 7.111247 TCAAAATCCATGAACACTTTCAGTT 57.889 32.000 0.00 0.00 45.07 3.16
2667 6886 6.713762 TCAAAATCCATGAACACTTTCAGT 57.286 33.333 0.00 0.00 45.07 3.41
2668 6887 8.422973 TTTTCAAAATCCATGAACACTTTCAG 57.577 30.769 0.00 0.00 45.07 3.02
2669 6888 8.783833 TTTTTCAAAATCCATGAACACTTTCA 57.216 26.923 0.00 0.00 45.93 2.69
2670 6889 9.654417 CATTTTTCAAAATCCATGAACACTTTC 57.346 29.630 0.00 0.00 36.52 2.62
2671 6890 9.176460 ACATTTTTCAAAATCCATGAACACTTT 57.824 25.926 0.00 0.00 36.52 2.66
2672 6891 8.735692 ACATTTTTCAAAATCCATGAACACTT 57.264 26.923 0.00 0.00 36.52 3.16
2673 6892 8.735692 AACATTTTTCAAAATCCATGAACACT 57.264 26.923 0.00 0.00 36.52 3.55
2674 6893 9.786105 AAAACATTTTTCAAAATCCATGAACAC 57.214 25.926 0.00 0.00 36.52 3.32
2713 6932 9.933723 CCCAATCTTCTTCAAATTCTTAATTGT 57.066 29.630 0.00 0.00 0.00 2.71
2754 6973 9.942850 AAACCCATGATCTTTATTTTTCGAAAT 57.057 25.926 12.12 0.00 0.00 2.17
2755 6974 9.202273 CAAACCCATGATCTTTATTTTTCGAAA 57.798 29.630 6.47 6.47 0.00 3.46
2756 6975 8.580720 TCAAACCCATGATCTTTATTTTTCGAA 58.419 29.630 0.00 0.00 0.00 3.71
2757 6976 8.026607 GTCAAACCCATGATCTTTATTTTTCGA 58.973 33.333 0.00 0.00 0.00 3.71
2758 6977 7.275560 GGTCAAACCCATGATCTTTATTTTTCG 59.724 37.037 0.00 0.00 30.04 3.46
2759 6978 8.093927 TGGTCAAACCCATGATCTTTATTTTTC 58.906 33.333 0.00 0.00 37.50 2.29
2760 6979 7.972301 TGGTCAAACCCATGATCTTTATTTTT 58.028 30.769 0.00 0.00 37.50 1.94
2761 6980 7.552050 TGGTCAAACCCATGATCTTTATTTT 57.448 32.000 0.00 0.00 37.50 1.82
2762 6981 7.552050 TTGGTCAAACCCATGATCTTTATTT 57.448 32.000 0.00 0.00 37.50 1.40
2763 6982 7.552050 TTTGGTCAAACCCATGATCTTTATT 57.448 32.000 0.00 0.00 37.50 1.40
2764 6983 7.235399 AGTTTTGGTCAAACCCATGATCTTTAT 59.765 33.333 0.00 0.00 45.42 1.40
2765 6984 6.553100 AGTTTTGGTCAAACCCATGATCTTTA 59.447 34.615 0.00 0.00 45.42 1.85
2766 6985 5.366477 AGTTTTGGTCAAACCCATGATCTTT 59.634 36.000 0.00 0.00 45.42 2.52
2767 6986 4.901250 AGTTTTGGTCAAACCCATGATCTT 59.099 37.500 0.00 0.00 45.42 2.40
2768 6987 4.482990 AGTTTTGGTCAAACCCATGATCT 58.517 39.130 0.00 0.00 45.42 2.75
2769 6988 4.280677 TGAGTTTTGGTCAAACCCATGATC 59.719 41.667 0.00 0.00 45.42 2.92
2770 6989 4.222336 TGAGTTTTGGTCAAACCCATGAT 58.778 39.130 0.00 0.00 45.42 2.45
2771 6990 3.636679 TGAGTTTTGGTCAAACCCATGA 58.363 40.909 0.00 0.00 45.42 3.07
2772 6991 4.605640 ATGAGTTTTGGTCAAACCCATG 57.394 40.909 0.00 0.00 41.09 3.66
2773 6992 4.653341 TCAATGAGTTTTGGTCAAACCCAT 59.347 37.500 0.00 0.00 43.66 4.00
2774 6993 4.026744 TCAATGAGTTTTGGTCAAACCCA 58.973 39.130 0.00 0.00 45.42 4.51
2775 6994 4.664150 TCAATGAGTTTTGGTCAAACCC 57.336 40.909 0.00 0.00 45.42 4.11
2776 6995 7.408910 CAAAATCAATGAGTTTTGGTCAAACC 58.591 34.615 5.90 0.00 45.42 3.27
2784 7003 9.654417 GACATTTTCCAAAATCAATGAGTTTTG 57.346 29.630 5.90 12.83 42.21 2.44
2785 7004 8.839343 GGACATTTTCCAAAATCAATGAGTTTT 58.161 29.630 5.90 2.41 45.10 2.43
2786 7005 8.382030 GGACATTTTCCAAAATCAATGAGTTT 57.618 30.769 2.57 2.57 45.10 2.66
2787 7006 7.967890 GGACATTTTCCAAAATCAATGAGTT 57.032 32.000 0.00 0.00 45.10 3.01
2801 7020 7.094677 CCTTTTTCAAATCCATGGACATTTTCC 60.095 37.037 18.99 0.00 46.13 3.13
2802 7021 7.445096 ACCTTTTTCAAATCCATGGACATTTTC 59.555 33.333 18.99 0.00 0.00 2.29
2803 7022 7.289310 ACCTTTTTCAAATCCATGGACATTTT 58.711 30.769 18.99 11.43 0.00 1.82
2804 7023 6.840527 ACCTTTTTCAAATCCATGGACATTT 58.159 32.000 18.99 12.23 0.00 2.32
2805 7024 6.438186 ACCTTTTTCAAATCCATGGACATT 57.562 33.333 18.99 12.77 0.00 2.71
2806 7025 6.438186 AACCTTTTTCAAATCCATGGACAT 57.562 33.333 18.99 6.29 0.00 3.06
2807 7026 5.508825 CGAACCTTTTTCAAATCCATGGACA 60.509 40.000 18.99 0.00 0.00 4.02
2808 7027 4.923281 CGAACCTTTTTCAAATCCATGGAC 59.077 41.667 18.99 0.00 0.00 4.02
2809 7028 4.560513 GCGAACCTTTTTCAAATCCATGGA 60.561 41.667 18.88 18.88 0.00 3.41
2810 7029 3.679502 GCGAACCTTTTTCAAATCCATGG 59.320 43.478 4.97 4.97 0.00 3.66
2811 7030 3.364621 CGCGAACCTTTTTCAAATCCATG 59.635 43.478 0.00 0.00 0.00 3.66
2812 7031 3.574614 CGCGAACCTTTTTCAAATCCAT 58.425 40.909 0.00 0.00 0.00 3.41
2813 7032 2.287909 CCGCGAACCTTTTTCAAATCCA 60.288 45.455 8.23 0.00 0.00 3.41
2814 7033 2.030628 TCCGCGAACCTTTTTCAAATCC 60.031 45.455 8.23 0.00 0.00 3.01
2815 7034 3.276882 TCCGCGAACCTTTTTCAAATC 57.723 42.857 8.23 0.00 0.00 2.17
2816 7035 3.719173 TTCCGCGAACCTTTTTCAAAT 57.281 38.095 8.23 0.00 0.00 2.32
2817 7036 3.719173 ATTCCGCGAACCTTTTTCAAA 57.281 38.095 8.23 0.00 0.00 2.69
2818 7037 3.719173 AATTCCGCGAACCTTTTTCAA 57.281 38.095 8.23 0.00 0.00 2.69
2819 7038 3.066900 TCAAATTCCGCGAACCTTTTTCA 59.933 39.130 8.23 0.00 0.00 2.69
2820 7039 3.634283 TCAAATTCCGCGAACCTTTTTC 58.366 40.909 8.23 0.00 0.00 2.29
2821 7040 3.719173 TCAAATTCCGCGAACCTTTTT 57.281 38.095 8.23 0.00 0.00 1.94
2822 7041 3.934457 ATCAAATTCCGCGAACCTTTT 57.066 38.095 8.23 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.