Multiple sequence alignment - TraesCS7A01G077600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G077600 chr7A 100.000 3222 0 0 1 3222 42536218 42539439 0.000000e+00 5951.0
1 TraesCS7A01G077600 chr7A 84.831 178 17 10 3032 3206 169041727 169041897 1.540000e-38 171.0
2 TraesCS7A01G077600 chr7D 91.986 1959 96 20 390 2322 42900372 42902295 0.000000e+00 2691.0
3 TraesCS7A01G077600 chr7D 95.887 389 16 0 1 389 335848485 335848873 5.870000e-177 630.0
4 TraesCS7A01G077600 chr7D 79.426 418 55 21 2378 2790 42905169 42905560 1.910000e-67 267.0
5 TraesCS7A01G077600 chr7D 81.538 130 16 6 2641 2764 42947214 42947341 2.050000e-17 100.0
6 TraesCS7A01G077600 chr4A 91.684 1467 64 13 544 1981 650409177 650410614 0.000000e+00 1980.0
7 TraesCS7A01G077600 chr4A 95.630 389 17 0 1 389 78259619 78260007 2.730000e-175 625.0
8 TraesCS7A01G077600 chr2B 95.373 389 18 0 1 389 170350401 170350013 1.270000e-173 619.0
9 TraesCS7A01G077600 chr2B 94.560 386 21 0 1 386 710836067 710836452 5.950000e-167 597.0
10 TraesCS7A01G077600 chr1B 95.116 389 19 0 1 389 687569418 687569030 5.910000e-172 614.0
11 TraesCS7A01G077600 chr1B 93.830 389 24 0 1 389 13533308 13533696 1.290000e-163 586.0
12 TraesCS7A01G077600 chr1A 94.344 389 22 0 1 389 19500544 19500156 5.950000e-167 597.0
13 TraesCS7A01G077600 chr4B 94.315 387 21 1 3 389 584448922 584449307 2.770000e-165 592.0
14 TraesCS7A01G077600 chr4B 93.622 392 21 3 1 389 87455643 87456033 1.670000e-162 582.0
15 TraesCS7A01G077600 chr4D 81.538 130 16 6 2641 2764 474444494 474444367 2.050000e-17 100.0
16 TraesCS7A01G077600 chr1D 80.000 130 16 8 2641 2764 416229188 416229063 1.590000e-13 87.9
17 TraesCS7A01G077600 chr6A 74.500 200 38 12 2607 2798 78724241 78724047 1.240000e-09 75.0
18 TraesCS7A01G077600 chr5A 78.261 115 21 3 2636 2747 11209690 11209577 1.600000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G077600 chr7A 42536218 42539439 3221 False 5951 5951 100.000 1 3222 1 chr7A.!!$F1 3221
1 TraesCS7A01G077600 chr7D 42900372 42905560 5188 False 1479 2691 85.706 390 2790 2 chr7D.!!$F3 2400
2 TraesCS7A01G077600 chr4A 650409177 650410614 1437 False 1980 1980 91.684 544 1981 1 chr4A.!!$F2 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.324923 TGCATCCTACTACCGGGTGT 60.325 55.0 10.66 6.62 35.06 4.16 F
1711 1726 0.598562 GCACTGTCTCCGTTCTCAGA 59.401 55.0 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2017 0.179004 TGTGGCAGGACGAAATGGTT 60.179 50.0 0.00 0.0 0.00 3.67 R
3083 5941 1.255882 AAAATGCCATGCACTCGGAA 58.744 45.0 2.87 0.0 43.04 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.804036 TGGAAAATGCATCCTACTACCG 58.196 45.455 0.00 0.00 37.85 4.02
48 49 3.139077 GGAAAATGCATCCTACTACCGG 58.861 50.000 0.00 0.00 33.98 5.28
49 50 2.930826 AAATGCATCCTACTACCGGG 57.069 50.000 6.32 0.00 0.00 5.73
50 51 1.802553 AATGCATCCTACTACCGGGT 58.197 50.000 6.32 4.46 0.00 5.28
51 52 1.048601 ATGCATCCTACTACCGGGTG 58.951 55.000 10.66 0.00 35.71 4.61
52 53 0.324923 TGCATCCTACTACCGGGTGT 60.325 55.000 10.66 6.62 35.06 4.16
53 54 1.063792 TGCATCCTACTACCGGGTGTA 60.064 52.381 10.66 7.54 35.06 2.90
76 77 9.209048 TGTAGTTACACCCATTTCTCATATACT 57.791 33.333 0.00 0.00 0.00 2.12
83 84 8.884323 ACACCCATTTCTCATATACTATCATGT 58.116 33.333 0.00 0.00 0.00 3.21
84 85 9.159364 CACCCATTTCTCATATACTATCATGTG 57.841 37.037 0.00 0.00 0.00 3.21
85 86 8.324306 ACCCATTTCTCATATACTATCATGTGG 58.676 37.037 0.00 0.00 0.00 4.17
86 87 8.324306 CCCATTTCTCATATACTATCATGTGGT 58.676 37.037 0.00 0.00 0.00 4.16
153 154 7.768807 ATATCTAAGATACTCCAAAGCGAGT 57.231 36.000 0.00 0.00 45.15 4.18
154 155 5.916661 TCTAAGATACTCCAAAGCGAGTT 57.083 39.130 0.00 0.00 40.23 3.01
155 156 7.584122 ATCTAAGATACTCCAAAGCGAGTTA 57.416 36.000 0.00 0.00 40.23 2.24
156 157 7.584122 TCTAAGATACTCCAAAGCGAGTTAT 57.416 36.000 0.00 0.00 40.23 1.89
157 158 7.426410 TCTAAGATACTCCAAAGCGAGTTATG 58.574 38.462 0.00 0.00 40.23 1.90
158 159 5.599999 AGATACTCCAAAGCGAGTTATGT 57.400 39.130 0.00 0.00 40.23 2.29
159 160 5.352284 AGATACTCCAAAGCGAGTTATGTG 58.648 41.667 0.00 0.00 40.23 3.21
160 161 3.678056 ACTCCAAAGCGAGTTATGTGA 57.322 42.857 0.00 0.00 40.23 3.58
161 162 4.002906 ACTCCAAAGCGAGTTATGTGAA 57.997 40.909 0.00 0.00 40.23 3.18
162 163 4.385825 ACTCCAAAGCGAGTTATGTGAAA 58.614 39.130 0.00 0.00 40.23 2.69
163 164 4.819630 ACTCCAAAGCGAGTTATGTGAAAA 59.180 37.500 0.00 0.00 40.23 2.29
164 165 5.298276 ACTCCAAAGCGAGTTATGTGAAAAA 59.702 36.000 0.00 0.00 40.23 1.94
183 184 4.530710 AAAATTGCATGTGAGCTCATGT 57.469 36.364 21.47 8.91 44.68 3.21
184 185 4.530710 AAATTGCATGTGAGCTCATGTT 57.469 36.364 21.47 4.89 44.68 2.71
185 186 4.530710 AATTGCATGTGAGCTCATGTTT 57.469 36.364 21.47 7.86 44.68 2.83
186 187 4.530710 ATTGCATGTGAGCTCATGTTTT 57.469 36.364 21.47 0.26 44.68 2.43
187 188 4.325028 TTGCATGTGAGCTCATGTTTTT 57.675 36.364 21.47 0.00 44.68 1.94
188 189 5.450592 TTGCATGTGAGCTCATGTTTTTA 57.549 34.783 21.47 0.86 44.68 1.52
189 190 5.648178 TGCATGTGAGCTCATGTTTTTAT 57.352 34.783 21.47 3.62 44.68 1.40
190 191 6.756299 TGCATGTGAGCTCATGTTTTTATA 57.244 33.333 21.47 0.00 44.68 0.98
191 192 7.155655 TGCATGTGAGCTCATGTTTTTATAA 57.844 32.000 21.47 0.00 44.68 0.98
192 193 7.774134 TGCATGTGAGCTCATGTTTTTATAAT 58.226 30.769 21.47 0.00 44.68 1.28
193 194 8.901793 TGCATGTGAGCTCATGTTTTTATAATA 58.098 29.630 21.47 0.00 44.68 0.98
194 195 9.903682 GCATGTGAGCTCATGTTTTTATAATAT 57.096 29.630 21.47 0.00 44.68 1.28
235 236 9.646336 CATATTTGTACGTAAAAAGGAGTATGC 57.354 33.333 15.76 0.00 0.00 3.14
236 237 7.916914 ATTTGTACGTAAAAAGGAGTATGCT 57.083 32.000 15.76 0.00 40.15 3.79
237 238 6.956299 TTGTACGTAAAAAGGAGTATGCTC 57.044 37.500 1.56 1.56 33.13 4.26
238 239 6.028146 TGTACGTAAAAAGGAGTATGCTCA 57.972 37.500 13.14 0.00 43.37 4.26
239 240 6.457355 TGTACGTAAAAAGGAGTATGCTCAA 58.543 36.000 13.14 0.00 43.37 3.02
240 241 6.930164 TGTACGTAAAAAGGAGTATGCTCAAA 59.070 34.615 13.14 0.00 43.37 2.69
241 242 6.870971 ACGTAAAAAGGAGTATGCTCAAAA 57.129 33.333 13.14 0.00 43.37 2.44
242 243 6.665465 ACGTAAAAAGGAGTATGCTCAAAAC 58.335 36.000 13.14 1.46 43.37 2.43
243 244 6.261381 ACGTAAAAAGGAGTATGCTCAAAACA 59.739 34.615 13.14 0.00 43.37 2.83
244 245 7.040686 ACGTAAAAAGGAGTATGCTCAAAACAT 60.041 33.333 13.14 0.00 43.37 2.71
245 246 8.447833 CGTAAAAAGGAGTATGCTCAAAACATA 58.552 33.333 13.14 0.00 43.37 2.29
246 247 9.556030 GTAAAAAGGAGTATGCTCAAAACATAC 57.444 33.333 13.14 5.91 46.68 2.39
257 258 7.980742 TGCTCAAAACATACTACATACTACG 57.019 36.000 0.00 0.00 0.00 3.51
258 259 7.541162 TGCTCAAAACATACTACATACTACGT 58.459 34.615 0.00 0.00 0.00 3.57
259 260 8.676401 TGCTCAAAACATACTACATACTACGTA 58.324 33.333 0.00 0.00 0.00 3.57
260 261 9.507280 GCTCAAAACATACTACATACTACGTAA 57.493 33.333 0.00 0.00 0.00 3.18
309 310 9.674824 AACATTCTTACATACTACATACTACGC 57.325 33.333 0.00 0.00 0.00 4.42
310 311 8.013947 ACATTCTTACATACTACATACTACGCG 58.986 37.037 3.53 3.53 0.00 6.01
311 312 7.482654 TTCTTACATACTACATACTACGCGT 57.517 36.000 19.17 19.17 0.00 6.01
312 313 8.587952 TTCTTACATACTACATACTACGCGTA 57.412 34.615 19.40 19.40 0.00 4.42
313 314 8.007821 TCTTACATACTACATACTACGCGTAC 57.992 38.462 16.41 0.00 0.00 3.67
314 315 7.651704 TCTTACATACTACATACTACGCGTACA 59.348 37.037 16.41 6.57 0.00 2.90
315 316 6.791887 ACATACTACATACTACGCGTACAT 57.208 37.500 16.41 8.81 0.00 2.29
316 317 7.889589 ACATACTACATACTACGCGTACATA 57.110 36.000 16.41 11.24 0.00 2.29
317 318 7.733608 ACATACTACATACTACGCGTACATAC 58.266 38.462 16.41 0.00 0.00 2.39
318 319 7.600375 ACATACTACATACTACGCGTACATACT 59.400 37.037 16.41 0.56 0.00 2.12
319 320 6.459257 ACTACATACTACGCGTACATACTC 57.541 41.667 16.41 0.00 0.00 2.59
320 321 6.219473 ACTACATACTACGCGTACATACTCT 58.781 40.000 16.41 0.00 0.00 3.24
321 322 5.588568 ACATACTACGCGTACATACTCTC 57.411 43.478 16.41 0.00 0.00 3.20
322 323 4.450419 ACATACTACGCGTACATACTCTCC 59.550 45.833 16.41 0.00 0.00 3.71
323 324 1.863454 ACTACGCGTACATACTCTCCG 59.137 52.381 16.41 4.02 0.00 4.63
324 325 2.130395 CTACGCGTACATACTCTCCGA 58.870 52.381 16.41 0.00 0.00 4.55
325 326 1.590932 ACGCGTACATACTCTCCGAT 58.409 50.000 11.67 0.00 0.00 4.18
326 327 2.759191 ACGCGTACATACTCTCCGATA 58.241 47.619 11.67 0.00 0.00 2.92
327 328 3.332919 ACGCGTACATACTCTCCGATAT 58.667 45.455 11.67 0.00 0.00 1.63
328 329 3.750130 ACGCGTACATACTCTCCGATATT 59.250 43.478 11.67 0.00 0.00 1.28
329 330 4.931601 ACGCGTACATACTCTCCGATATTA 59.068 41.667 11.67 0.00 0.00 0.98
330 331 5.583854 ACGCGTACATACTCTCCGATATTAT 59.416 40.000 11.67 0.00 0.00 1.28
331 332 6.758416 ACGCGTACATACTCTCCGATATTATA 59.242 38.462 11.67 0.00 0.00 0.98
332 333 7.042858 ACGCGTACATACTCTCCGATATTATAG 60.043 40.741 11.67 0.00 0.00 1.31
333 334 7.168804 CGCGTACATACTCTCCGATATTATAGA 59.831 40.741 0.00 0.00 0.00 1.98
334 335 8.991026 GCGTACATACTCTCCGATATTATAGAT 58.009 37.037 0.00 0.00 0.00 1.98
356 357 8.743085 AGATACTACCTAGAACGTATGAAACA 57.257 34.615 0.00 0.00 0.00 2.83
357 358 9.182214 AGATACTACCTAGAACGTATGAAACAA 57.818 33.333 0.00 0.00 0.00 2.83
358 359 9.793252 GATACTACCTAGAACGTATGAAACAAA 57.207 33.333 0.00 0.00 0.00 2.83
360 361 8.530269 ACTACCTAGAACGTATGAAACAAAAG 57.470 34.615 0.00 0.00 0.00 2.27
361 362 8.146412 ACTACCTAGAACGTATGAAACAAAAGT 58.854 33.333 0.00 0.00 0.00 2.66
362 363 7.186021 ACCTAGAACGTATGAAACAAAAGTG 57.814 36.000 0.00 0.00 0.00 3.16
363 364 6.204108 ACCTAGAACGTATGAAACAAAAGTGG 59.796 38.462 0.00 0.00 0.00 4.00
364 365 5.432885 AGAACGTATGAAACAAAAGTGGG 57.567 39.130 0.00 0.00 0.00 4.61
365 366 5.127491 AGAACGTATGAAACAAAAGTGGGA 58.873 37.500 0.00 0.00 0.00 4.37
366 367 5.238650 AGAACGTATGAAACAAAAGTGGGAG 59.761 40.000 0.00 0.00 0.00 4.30
367 368 4.457466 ACGTATGAAACAAAAGTGGGAGT 58.543 39.130 0.00 0.00 0.00 3.85
368 369 5.613329 ACGTATGAAACAAAAGTGGGAGTA 58.387 37.500 0.00 0.00 0.00 2.59
369 370 6.056884 ACGTATGAAACAAAAGTGGGAGTAA 58.943 36.000 0.00 0.00 0.00 2.24
370 371 6.017687 ACGTATGAAACAAAAGTGGGAGTAAC 60.018 38.462 0.00 0.00 0.00 2.50
371 372 6.204108 CGTATGAAACAAAAGTGGGAGTAACT 59.796 38.462 0.00 0.00 0.00 2.24
372 373 7.385752 CGTATGAAACAAAAGTGGGAGTAACTA 59.614 37.037 0.00 0.00 0.00 2.24
373 374 6.930667 TGAAACAAAAGTGGGAGTAACTAC 57.069 37.500 0.00 0.00 0.00 2.73
374 375 6.416415 TGAAACAAAAGTGGGAGTAACTACA 58.584 36.000 0.00 0.00 0.00 2.74
375 376 6.316890 TGAAACAAAAGTGGGAGTAACTACAC 59.683 38.462 0.00 0.00 0.00 2.90
376 377 4.711399 ACAAAAGTGGGAGTAACTACACC 58.289 43.478 0.00 0.00 36.39 4.16
380 381 2.982026 GGGAGTAACTACACCCGGT 58.018 57.895 0.00 0.00 45.03 5.28
381 382 2.143876 GGGAGTAACTACACCCGGTA 57.856 55.000 0.00 0.00 45.03 4.02
391 392 2.537633 ACACCCGGTAGTAGGAATCA 57.462 50.000 0.00 0.00 0.00 2.57
392 393 2.823959 ACACCCGGTAGTAGGAATCAA 58.176 47.619 0.00 0.00 0.00 2.57
393 394 2.498885 ACACCCGGTAGTAGGAATCAAC 59.501 50.000 0.00 0.00 0.00 3.18
474 476 7.393515 CCCTTGTTATATAATCCCTTAGTTGGC 59.606 40.741 0.00 0.00 0.00 4.52
546 548 5.826601 TTGTTTGTACAAGCAGAATGACA 57.173 34.783 21.95 12.19 39.29 3.58
549 551 6.207928 TGTTTGTACAAGCAGAATGACAATG 58.792 36.000 19.74 0.00 39.69 2.82
658 660 8.896320 ATTTCCTATTGGGTGTTGTTTTTAAC 57.104 30.769 0.00 0.00 36.25 2.01
751 753 5.892119 TCATATCTTCTTACCACCGAAGAGT 59.108 40.000 7.63 0.00 46.05 3.24
812 816 3.311853 ACAACCTATACCTGTATGGGGGT 60.312 47.826 19.88 15.20 45.27 4.95
903 907 7.623630 TCTCATGTGAAATGATGAGGTAAGAA 58.376 34.615 0.00 0.00 43.92 2.52
904 908 8.102676 TCTCATGTGAAATGATGAGGTAAGAAA 58.897 33.333 0.00 0.00 43.92 2.52
905 909 8.812513 TCATGTGAAATGATGAGGTAAGAAAT 57.187 30.769 0.00 0.00 0.00 2.17
906 910 9.246670 TCATGTGAAATGATGAGGTAAGAAATT 57.753 29.630 0.00 0.00 0.00 1.82
1133 1148 4.796038 TTAGAGTTTACCGTCAAGGAGG 57.204 45.455 0.00 0.00 45.00 4.30
1136 1151 1.622312 AGTTTACCGTCAAGGAGGACC 59.378 52.381 0.00 0.00 45.00 4.46
1156 1171 3.054434 ACCCGATCCATCTTCACATTTGA 60.054 43.478 0.00 0.00 0.00 2.69
1321 1336 1.102809 TGACCACAGCTGCAACCAAG 61.103 55.000 15.27 0.00 0.00 3.61
1324 1339 0.896940 CCACAGCTGCAACCAAGGAT 60.897 55.000 15.27 0.00 0.00 3.24
1342 1357 3.952323 AGGATATCTTCTTCGACGTGGAA 59.048 43.478 12.62 12.62 0.00 3.53
1414 1429 1.070275 GGAAAGGTTCACCGTCGGT 59.930 57.895 12.23 12.23 42.08 4.69
1504 1519 3.011517 AGCGAGCCCAAGGATGGT 61.012 61.111 0.00 0.00 46.01 3.55
1507 1522 1.972660 GCGAGCCCAAGGATGGTACT 61.973 60.000 0.00 0.00 46.01 2.73
1685 1700 3.933542 GAGGGGGACTGCCTCACCT 62.934 68.421 0.00 0.00 43.13 4.00
1702 1717 0.673022 CCTTGAGCTGCACTGTCTCC 60.673 60.000 1.02 0.00 0.00 3.71
1711 1726 0.598562 GCACTGTCTCCGTTCTCAGA 59.401 55.000 0.00 0.00 0.00 3.27
1738 1753 1.452953 AACTGTCGTCCGACTGAGCA 61.453 55.000 26.37 5.46 43.68 4.26
1756 1774 1.396653 CACATCCATGGCTTCCTTCC 58.603 55.000 6.96 0.00 0.00 3.46
1844 1862 7.231467 AGCAGGAGGTTAAGATTTTTACTTCA 58.769 34.615 0.86 0.00 0.00 3.02
1876 1894 2.479837 GATGTGGTTGTGTTCGAGTCA 58.520 47.619 0.00 0.00 0.00 3.41
1887 1907 3.916172 GTGTTCGAGTCAAAGCGTATGTA 59.084 43.478 0.00 0.00 0.00 2.29
1918 1954 7.480810 ACTGGTTGAGAACTAAAATTTGTCAC 58.519 34.615 0.00 0.00 0.00 3.67
1928 1964 4.576106 AAAATTTGTCACGTGTTTGTGC 57.424 36.364 16.51 1.24 39.73 4.57
1945 1981 1.205417 GTGCTTGTGCCCATGCTATTT 59.795 47.619 8.43 0.00 41.15 1.40
1948 1984 2.354003 GCTTGTGCCCATGCTATTTGTT 60.354 45.455 0.00 0.00 38.39 2.83
1962 1998 2.376915 TTTGTTGATGCGAACGACAC 57.623 45.000 0.00 0.00 32.32 3.67
1981 2017 5.163903 CGACACGGTTGATTACAAATCATCA 60.164 40.000 3.34 0.00 37.77 3.07
1992 2028 7.967854 TGATTACAAATCATCAACCATTTCGTC 59.032 33.333 0.00 0.00 0.00 4.20
1993 2029 5.059404 ACAAATCATCAACCATTTCGTCC 57.941 39.130 0.00 0.00 0.00 4.79
1996 2032 2.083774 TCATCAACCATTTCGTCCTGC 58.916 47.619 0.00 0.00 0.00 4.85
2012 2048 1.492176 CCTGCCACATATTCTCCAGGT 59.508 52.381 0.00 0.00 36.10 4.00
2020 2056 3.203040 ACATATTCTCCAGGTCCAAAGGG 59.797 47.826 0.00 0.00 0.00 3.95
2046 2082 3.149196 AGTGCACAACTACCATTTCCTG 58.851 45.455 21.04 0.00 37.36 3.86
2047 2083 2.884639 GTGCACAACTACCATTTCCTGT 59.115 45.455 13.17 0.00 0.00 4.00
2048 2084 3.058224 GTGCACAACTACCATTTCCTGTC 60.058 47.826 13.17 0.00 0.00 3.51
2049 2085 3.181445 TGCACAACTACCATTTCCTGTCT 60.181 43.478 0.00 0.00 0.00 3.41
2050 2086 3.821033 GCACAACTACCATTTCCTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2051 2087 4.278419 GCACAACTACCATTTCCTGTCTTT 59.722 41.667 0.00 0.00 0.00 2.52
2078 2114 2.853457 CGAACACGCAAAGTTGGTG 58.147 52.632 9.65 9.65 36.26 4.17
2091 2127 7.026562 CGCAAAGTTGGTGTATCATTTCATTA 58.973 34.615 0.00 0.00 0.00 1.90
2113 2149 9.482627 CATTAATAGAAGGAAATAGAGCGAGTT 57.517 33.333 0.00 0.00 0.00 3.01
2153 2189 1.205893 TGGCACACACGCATACATAGA 59.794 47.619 0.00 0.00 0.00 1.98
2165 2201 0.906066 TACATAGAAAGGCGTGGGCA 59.094 50.000 0.00 0.00 42.47 5.36
2190 2226 1.515020 CCCGAGCAGAGAGACAAGG 59.485 63.158 0.00 0.00 0.00 3.61
2193 2229 1.110442 CGAGCAGAGAGACAAGGGAT 58.890 55.000 0.00 0.00 0.00 3.85
2194 2230 1.202394 CGAGCAGAGAGACAAGGGATG 60.202 57.143 0.00 0.00 0.00 3.51
2195 2231 0.540923 AGCAGAGAGACAAGGGATGC 59.459 55.000 0.00 0.00 0.00 3.91
2196 2232 0.540923 GCAGAGAGACAAGGGATGCT 59.459 55.000 0.00 0.00 0.00 3.79
2197 2233 1.065564 GCAGAGAGACAAGGGATGCTT 60.066 52.381 0.00 0.00 0.00 3.91
2198 2234 2.169352 GCAGAGAGACAAGGGATGCTTA 59.831 50.000 0.00 0.00 0.00 3.09
2199 2235 3.740764 GCAGAGAGACAAGGGATGCTTAG 60.741 52.174 0.00 0.00 0.00 2.18
2200 2236 3.703556 CAGAGAGACAAGGGATGCTTAGA 59.296 47.826 0.00 0.00 0.00 2.10
2201 2237 3.704061 AGAGAGACAAGGGATGCTTAGAC 59.296 47.826 0.00 0.00 0.00 2.59
2202 2238 2.769095 AGAGACAAGGGATGCTTAGACC 59.231 50.000 0.00 0.00 0.00 3.85
2203 2239 2.501723 GAGACAAGGGATGCTTAGACCA 59.498 50.000 0.00 0.00 0.00 4.02
2204 2240 2.912956 AGACAAGGGATGCTTAGACCAA 59.087 45.455 0.00 0.00 0.00 3.67
2205 2241 3.330701 AGACAAGGGATGCTTAGACCAAA 59.669 43.478 0.00 0.00 0.00 3.28
2206 2242 3.421844 ACAAGGGATGCTTAGACCAAAC 58.578 45.455 0.00 0.00 0.00 2.93
2207 2243 2.755103 CAAGGGATGCTTAGACCAAACC 59.245 50.000 0.00 0.00 0.00 3.27
2208 2244 1.992557 AGGGATGCTTAGACCAAACCA 59.007 47.619 0.00 0.00 0.00 3.67
2209 2245 2.378547 AGGGATGCTTAGACCAAACCAA 59.621 45.455 0.00 0.00 0.00 3.67
2210 2246 3.161866 GGGATGCTTAGACCAAACCAAA 58.838 45.455 0.00 0.00 0.00 3.28
2211 2247 3.056821 GGGATGCTTAGACCAAACCAAAC 60.057 47.826 0.00 0.00 0.00 2.93
2212 2248 3.572255 GGATGCTTAGACCAAACCAAACA 59.428 43.478 0.00 0.00 0.00 2.83
2213 2249 4.321230 GGATGCTTAGACCAAACCAAACAG 60.321 45.833 0.00 0.00 0.00 3.16
2214 2250 3.892284 TGCTTAGACCAAACCAAACAGA 58.108 40.909 0.00 0.00 0.00 3.41
2215 2251 3.882888 TGCTTAGACCAAACCAAACAGAG 59.117 43.478 0.00 0.00 0.00 3.35
2216 2252 4.134563 GCTTAGACCAAACCAAACAGAGA 58.865 43.478 0.00 0.00 0.00 3.10
2249 2286 3.736720 ACTAAAAAGTCGAACACCTCCC 58.263 45.455 0.00 0.00 0.00 4.30
2252 2289 0.974383 AAAGTCGAACACCTCCCGAT 59.026 50.000 0.00 0.00 34.71 4.18
2257 2294 0.036765 CGAACACCTCCCGATCCAAA 60.037 55.000 0.00 0.00 0.00 3.28
2260 2297 1.077716 CACCTCCCGATCCAAACCC 60.078 63.158 0.00 0.00 0.00 4.11
2288 2325 1.819928 TGCGAGGAAGCAAAATAGCA 58.180 45.000 0.00 0.00 45.06 3.49
2305 2342 1.064832 AGCATCTTCAAGAAGGGGAGC 60.065 52.381 9.73 8.64 38.88 4.70
2306 2343 1.340405 GCATCTTCAAGAAGGGGAGCA 60.340 52.381 9.73 0.00 38.88 4.26
2308 2345 3.629087 CATCTTCAAGAAGGGGAGCAAT 58.371 45.455 9.73 0.00 38.88 3.56
2322 2359 1.260033 GAGCAATGCGATCCGAAGAAG 59.740 52.381 0.00 0.00 0.00 2.85
2323 2360 1.009829 GCAATGCGATCCGAAGAAGT 58.990 50.000 0.00 0.00 0.00 3.01
2327 2364 1.254975 TGCGATCCGAAGAAGTGGGA 61.255 55.000 0.00 0.00 38.68 4.37
2328 2365 0.108329 GCGATCCGAAGAAGTGGGAA 60.108 55.000 0.00 0.00 37.71 3.97
2329 2366 1.473434 GCGATCCGAAGAAGTGGGAAT 60.473 52.381 0.00 0.00 37.71 3.01
2331 2368 3.555168 GCGATCCGAAGAAGTGGGAATAT 60.555 47.826 0.00 0.00 37.71 1.28
2332 2369 4.632153 CGATCCGAAGAAGTGGGAATATT 58.368 43.478 0.00 0.00 37.71 1.28
2333 2370 5.057149 CGATCCGAAGAAGTGGGAATATTT 58.943 41.667 0.00 0.00 37.71 1.40
2334 2371 5.177696 CGATCCGAAGAAGTGGGAATATTTC 59.822 44.000 0.00 0.00 37.71 2.17
2335 2372 5.429681 TCCGAAGAAGTGGGAATATTTCA 57.570 39.130 0.00 0.00 29.75 2.69
2336 2373 5.811190 TCCGAAGAAGTGGGAATATTTCAA 58.189 37.500 0.00 0.00 29.75 2.69
2338 2375 5.414454 CCGAAGAAGTGGGAATATTTCAACA 59.586 40.000 4.00 0.00 0.00 3.33
2339 2376 6.314784 CGAAGAAGTGGGAATATTTCAACAC 58.685 40.000 4.00 0.04 38.53 3.32
2340 2377 6.072728 CGAAGAAGTGGGAATATTTCAACACA 60.073 38.462 4.00 0.00 39.81 3.72
2349 5123 8.694540 TGGGAATATTTCAACACATGATAAAGG 58.305 33.333 0.00 0.00 38.03 3.11
2370 5144 2.416431 GCTATTGTGCAAGCCCTCAAAG 60.416 50.000 0.00 0.00 32.40 2.77
2371 5145 0.971386 ATTGTGCAAGCCCTCAAAGG 59.029 50.000 0.00 0.00 34.30 3.11
2408 5263 4.145807 TCTTTCCCGGTTTTATGAAAGCA 58.854 39.130 18.43 8.98 42.03 3.91
2412 5267 2.757868 CCCGGTTTTATGAAAGCATCCA 59.242 45.455 12.00 0.00 42.02 3.41
2413 5268 3.181487 CCCGGTTTTATGAAAGCATCCAG 60.181 47.826 12.00 0.00 42.02 3.86
2414 5269 3.694072 CCGGTTTTATGAAAGCATCCAGA 59.306 43.478 12.00 0.00 42.02 3.86
2416 5271 5.335127 CGGTTTTATGAAAGCATCCAGAAG 58.665 41.667 12.00 0.00 42.02 2.85
2417 5272 5.105063 GGTTTTATGAAAGCATCCAGAAGC 58.895 41.667 7.23 0.00 41.65 3.86
2418 5273 5.105595 GGTTTTATGAAAGCATCCAGAAGCT 60.106 40.000 7.23 0.00 44.31 3.74
2423 5278 2.391226 AGCATCCAGAAGCTTCCCA 58.609 52.632 22.81 7.43 38.01 4.37
2424 5279 0.700564 AGCATCCAGAAGCTTCCCAA 59.299 50.000 22.81 8.68 38.01 4.12
2425 5280 1.101331 GCATCCAGAAGCTTCCCAAG 58.899 55.000 22.81 10.38 0.00 3.61
2426 5281 1.615384 GCATCCAGAAGCTTCCCAAGT 60.615 52.381 22.81 0.59 0.00 3.16
2434 5289 5.507985 CCAGAAGCTTCCCAAGTAGTTTTTG 60.508 44.000 22.81 9.36 0.00 2.44
2450 5305 7.945109 AGTAGTTTTTGGGAAGCTTCTAGAAAT 59.055 33.333 25.05 13.50 0.00 2.17
2451 5306 7.603180 AGTTTTTGGGAAGCTTCTAGAAATT 57.397 32.000 25.05 14.95 0.00 1.82
2457 5312 6.748132 TGGGAAGCTTCTAGAAATTGTTTTG 58.252 36.000 25.05 0.00 0.00 2.44
2475 5330 5.929415 TGTTTTGTTTCTTGGTTTTCTGGAC 59.071 36.000 0.00 0.00 0.00 4.02
2479 5334 1.981256 TCTTGGTTTTCTGGACTGGC 58.019 50.000 0.00 0.00 0.00 4.85
2484 5342 2.430332 TGGTTTTCTGGACTGGCTTTTG 59.570 45.455 0.00 0.00 0.00 2.44
2486 5344 3.118775 GGTTTTCTGGACTGGCTTTTGTT 60.119 43.478 0.00 0.00 0.00 2.83
2495 5353 4.142708 GGACTGGCTTTTGTTTGGTTTTTG 60.143 41.667 0.00 0.00 0.00 2.44
2496 5354 3.755905 ACTGGCTTTTGTTTGGTTTTTGG 59.244 39.130 0.00 0.00 0.00 3.28
2503 5361 6.920758 GCTTTTGTTTGGTTTTTGGTTTTTCT 59.079 30.769 0.00 0.00 0.00 2.52
2504 5362 7.436673 GCTTTTGTTTGGTTTTTGGTTTTTCTT 59.563 29.630 0.00 0.00 0.00 2.52
2507 5365 9.653287 TTTGTTTGGTTTTTGGTTTTTCTTTTT 57.347 22.222 0.00 0.00 0.00 1.94
2583 5441 9.965824 TCATTTTTCATAAGACTGAACCTTTTC 57.034 29.630 0.00 0.00 34.96 2.29
2588 5446 8.477419 TTCATAAGACTGAACCTTTTCCAAAT 57.523 30.769 0.00 0.00 30.34 2.32
2590 5448 8.923270 TCATAAGACTGAACCTTTTCCAAATTT 58.077 29.630 0.00 0.00 0.00 1.82
2676 5534 9.778993 CATGAACTTTTTATTGATCAACGATCT 57.221 29.630 11.07 0.00 39.56 2.75
2729 5587 5.584253 TCGGTGAACTTTTTCCAAATTCA 57.416 34.783 0.00 0.00 0.00 2.57
2730 5588 5.344884 TCGGTGAACTTTTTCCAAATTCAC 58.655 37.500 6.83 6.83 45.40 3.18
2732 5590 5.344884 GGTGAACTTTTTCCAAATTCACGA 58.655 37.500 8.77 0.00 46.51 4.35
2735 5593 6.530181 GTGAACTTTTTCCAAATTCACGAACT 59.470 34.615 0.00 0.00 39.65 3.01
2751 5609 6.711579 TCACGAACTTTATATCAAATTCCGC 58.288 36.000 0.00 0.00 0.00 5.54
2775 5633 5.508825 CGAACCTTTTTCAAATCCATGGACA 60.509 40.000 18.99 0.00 0.00 4.02
2777 5635 6.438186 ACCTTTTTCAAATCCATGGACATT 57.562 33.333 18.99 12.77 0.00 2.71
2778 5636 6.840527 ACCTTTTTCAAATCCATGGACATTT 58.159 32.000 18.99 12.23 0.00 2.32
2779 5637 7.289310 ACCTTTTTCAAATCCATGGACATTTT 58.711 30.769 18.99 11.43 0.00 1.82
2780 5638 7.445096 ACCTTTTTCAAATCCATGGACATTTTC 59.555 33.333 18.99 0.00 0.00 2.29
2781 5639 7.094677 CCTTTTTCAAATCCATGGACATTTTCC 60.095 37.037 18.99 0.00 46.13 3.13
2795 5653 7.967890 GGACATTTTCCAAAATCAATGAGTT 57.032 32.000 0.00 0.00 45.10 3.01
2796 5654 8.382030 GGACATTTTCCAAAATCAATGAGTTT 57.618 30.769 2.57 2.57 45.10 2.66
2797 5655 8.839343 GGACATTTTCCAAAATCAATGAGTTTT 58.161 29.630 5.90 2.41 45.10 2.43
2798 5656 9.654417 GACATTTTCCAAAATCAATGAGTTTTG 57.346 29.630 5.90 12.83 42.21 2.44
2806 5664 7.408910 CAAAATCAATGAGTTTTGGTCAAACC 58.591 34.615 5.90 0.00 45.42 3.27
2807 5665 4.664150 TCAATGAGTTTTGGTCAAACCC 57.336 40.909 0.00 0.00 45.42 4.11
2808 5666 4.026744 TCAATGAGTTTTGGTCAAACCCA 58.973 39.130 0.00 0.00 45.42 4.51
2809 5667 4.653341 TCAATGAGTTTTGGTCAAACCCAT 59.347 37.500 0.00 0.00 43.66 4.00
2810 5668 4.605640 ATGAGTTTTGGTCAAACCCATG 57.394 40.909 0.00 0.00 41.09 3.66
2811 5669 3.636679 TGAGTTTTGGTCAAACCCATGA 58.363 40.909 0.00 0.00 45.42 3.07
2812 5670 4.222336 TGAGTTTTGGTCAAACCCATGAT 58.778 39.130 0.00 0.00 45.42 2.45
2813 5671 4.280677 TGAGTTTTGGTCAAACCCATGATC 59.719 41.667 0.00 0.00 45.42 2.92
2814 5672 4.482990 AGTTTTGGTCAAACCCATGATCT 58.517 39.130 0.00 0.00 45.42 2.75
2815 5673 4.901250 AGTTTTGGTCAAACCCATGATCTT 59.099 37.500 0.00 0.00 45.42 2.40
2816 5674 5.366477 AGTTTTGGTCAAACCCATGATCTTT 59.634 36.000 0.00 0.00 45.42 2.52
2817 5675 6.553100 AGTTTTGGTCAAACCCATGATCTTTA 59.447 34.615 0.00 0.00 45.42 1.85
2818 5676 7.235399 AGTTTTGGTCAAACCCATGATCTTTAT 59.765 33.333 0.00 0.00 45.42 1.40
2819 5677 7.552050 TTTGGTCAAACCCATGATCTTTATT 57.448 32.000 0.00 0.00 37.50 1.40
2820 5678 7.552050 TTGGTCAAACCCATGATCTTTATTT 57.448 32.000 0.00 0.00 37.50 1.40
2821 5679 7.552050 TGGTCAAACCCATGATCTTTATTTT 57.448 32.000 0.00 0.00 37.50 1.82
2822 5680 7.972301 TGGTCAAACCCATGATCTTTATTTTT 58.028 30.769 0.00 0.00 37.50 1.94
2823 5681 8.093927 TGGTCAAACCCATGATCTTTATTTTTC 58.906 33.333 0.00 0.00 37.50 2.29
2824 5682 7.275560 GGTCAAACCCATGATCTTTATTTTTCG 59.724 37.037 0.00 0.00 30.04 3.46
2825 5683 8.026607 GTCAAACCCATGATCTTTATTTTTCGA 58.973 33.333 0.00 0.00 0.00 3.71
2826 5684 8.580720 TCAAACCCATGATCTTTATTTTTCGAA 58.419 29.630 0.00 0.00 0.00 3.71
2827 5685 9.202273 CAAACCCATGATCTTTATTTTTCGAAA 57.798 29.630 6.47 6.47 0.00 3.46
2828 5686 9.942850 AAACCCATGATCTTTATTTTTCGAAAT 57.057 25.926 12.12 0.00 0.00 2.17
2869 5727 9.933723 CCCAATCTTCTTCAAATTCTTAATTGT 57.066 29.630 0.00 0.00 0.00 2.71
2908 5766 9.786105 AAAACATTTTTCAAAATCCATGAACAC 57.214 25.926 0.00 0.00 36.52 3.32
2909 5767 8.735692 AACATTTTTCAAAATCCATGAACACT 57.264 26.923 0.00 0.00 36.52 3.55
2910 5768 8.735692 ACATTTTTCAAAATCCATGAACACTT 57.264 26.923 0.00 0.00 36.52 3.16
2911 5769 9.176460 ACATTTTTCAAAATCCATGAACACTTT 57.824 25.926 0.00 0.00 36.52 2.66
2912 5770 9.654417 CATTTTTCAAAATCCATGAACACTTTC 57.346 29.630 0.00 0.00 36.52 2.62
2913 5771 8.783833 TTTTTCAAAATCCATGAACACTTTCA 57.216 26.923 0.00 0.00 45.93 2.69
2914 5772 8.422973 TTTTCAAAATCCATGAACACTTTCAG 57.577 30.769 0.00 0.00 45.07 3.02
2915 5773 6.713762 TCAAAATCCATGAACACTTTCAGT 57.286 33.333 0.00 0.00 45.07 3.41
2916 5774 7.111247 TCAAAATCCATGAACACTTTCAGTT 57.889 32.000 0.00 0.00 45.07 3.16
2917 5775 7.555087 TCAAAATCCATGAACACTTTCAGTTT 58.445 30.769 0.00 0.00 45.07 2.66
2918 5776 7.706179 TCAAAATCCATGAACACTTTCAGTTTC 59.294 33.333 0.00 0.00 45.07 2.78
2919 5777 4.811555 TCCATGAACACTTTCAGTTTCG 57.188 40.909 0.00 0.00 45.07 3.46
2920 5778 4.196193 TCCATGAACACTTTCAGTTTCGT 58.804 39.130 0.00 0.00 45.07 3.85
2921 5779 4.035091 TCCATGAACACTTTCAGTTTCGTG 59.965 41.667 0.00 10.74 45.07 4.35
2922 5780 4.035091 CCATGAACACTTTCAGTTTCGTGA 59.965 41.667 15.33 0.00 45.07 4.35
2923 5781 5.277974 CCATGAACACTTTCAGTTTCGTGAT 60.278 40.000 15.33 0.00 45.07 3.06
2924 5782 5.811399 TGAACACTTTCAGTTTCGTGATT 57.189 34.783 0.00 0.00 36.79 2.57
2925 5783 6.189677 TGAACACTTTCAGTTTCGTGATTT 57.810 33.333 0.00 0.00 36.79 2.17
2926 5784 6.616947 TGAACACTTTCAGTTTCGTGATTTT 58.383 32.000 0.00 0.00 36.79 1.82
2927 5785 7.087639 TGAACACTTTCAGTTTCGTGATTTTT 58.912 30.769 0.00 0.00 36.79 1.94
2947 5805 5.814314 TTTTAAACCGATGCACATTTTCG 57.186 34.783 0.00 0.00 0.00 3.46
2948 5806 4.750952 TTAAACCGATGCACATTTTCGA 57.249 36.364 8.18 0.00 34.92 3.71
2949 5807 3.634568 AAACCGATGCACATTTTCGAA 57.365 38.095 8.18 0.00 34.92 3.71
2950 5808 3.634568 AACCGATGCACATTTTCGAAA 57.365 38.095 6.47 6.47 34.92 3.46
2951 5809 3.848272 ACCGATGCACATTTTCGAAAT 57.152 38.095 12.12 0.00 34.92 2.17
2952 5810 4.173036 ACCGATGCACATTTTCGAAATT 57.827 36.364 12.12 5.37 34.92 1.82
2953 5811 4.555262 ACCGATGCACATTTTCGAAATTT 58.445 34.783 12.12 0.00 34.92 1.82
2954 5812 4.385447 ACCGATGCACATTTTCGAAATTTG 59.615 37.500 12.12 14.42 34.92 2.32
2955 5813 4.385447 CCGATGCACATTTTCGAAATTTGT 59.615 37.500 12.12 15.05 34.92 2.83
2956 5814 5.299622 CGATGCACATTTTCGAAATTTGTG 58.700 37.500 30.81 30.81 34.92 3.33
2957 5815 5.116831 CGATGCACATTTTCGAAATTTGTGA 59.883 36.000 35.04 26.12 34.92 3.58
2958 5816 6.345644 CGATGCACATTTTCGAAATTTGTGAA 60.346 34.615 35.04 30.56 34.92 3.18
2959 5817 6.030379 TGCACATTTTCGAAATTTGTGAAC 57.970 33.333 35.04 25.63 0.00 3.18
2960 5818 5.809562 TGCACATTTTCGAAATTTGTGAACT 59.190 32.000 35.04 13.40 0.00 3.01
2961 5819 6.312426 TGCACATTTTCGAAATTTGTGAACTT 59.688 30.769 35.04 12.90 0.00 2.66
2962 5820 7.148507 TGCACATTTTCGAAATTTGTGAACTTT 60.149 29.630 35.04 12.40 0.00 2.66
2963 5821 7.691877 GCACATTTTCGAAATTTGTGAACTTTT 59.308 29.630 35.04 11.90 0.00 2.27
2964 5822 9.540431 CACATTTTCGAAATTTGTGAACTTTTT 57.460 25.926 31.15 8.25 0.00 1.94
2998 5856 9.658799 TGTTATTTTTGTTTGTCAAATCTTGGA 57.341 25.926 0.40 0.00 44.15 3.53
3028 5886 8.825667 TTTGAATGTTAAAAAGTTAGGATGGC 57.174 30.769 0.00 0.00 0.00 4.40
3029 5887 7.531857 TGAATGTTAAAAAGTTAGGATGGCA 57.468 32.000 0.00 0.00 0.00 4.92
3030 5888 8.133024 TGAATGTTAAAAAGTTAGGATGGCAT 57.867 30.769 0.00 0.00 0.00 4.40
3031 5889 8.592809 TGAATGTTAAAAAGTTAGGATGGCATT 58.407 29.630 0.00 0.00 0.00 3.56
3032 5890 9.435688 GAATGTTAAAAAGTTAGGATGGCATTT 57.564 29.630 0.00 0.00 0.00 2.32
3033 5891 9.791801 AATGTTAAAAAGTTAGGATGGCATTTT 57.208 25.926 0.00 0.00 0.00 1.82
3034 5892 9.791801 ATGTTAAAAAGTTAGGATGGCATTTTT 57.208 25.926 0.00 6.09 34.99 1.94
3074 5932 9.737844 AGACATTTTTATTTTTATTGGCATGGT 57.262 25.926 0.00 0.00 0.00 3.55
3086 5944 9.660180 TTTTATTGGCATGGTACTTTTTATTCC 57.340 29.630 0.00 0.00 0.00 3.01
3087 5945 4.974368 TGGCATGGTACTTTTTATTCCG 57.026 40.909 0.00 0.00 0.00 4.30
3088 5946 4.590918 TGGCATGGTACTTTTTATTCCGA 58.409 39.130 0.00 0.00 0.00 4.55
3089 5947 4.638421 TGGCATGGTACTTTTTATTCCGAG 59.362 41.667 0.00 0.00 0.00 4.63
3090 5948 4.638865 GGCATGGTACTTTTTATTCCGAGT 59.361 41.667 0.00 0.00 0.00 4.18
3091 5949 5.448632 GGCATGGTACTTTTTATTCCGAGTG 60.449 44.000 0.00 0.00 0.00 3.51
3092 5950 5.569413 CATGGTACTTTTTATTCCGAGTGC 58.431 41.667 0.00 0.00 0.00 4.40
3093 5951 4.643463 TGGTACTTTTTATTCCGAGTGCA 58.357 39.130 0.00 0.00 0.00 4.57
3094 5952 5.250200 TGGTACTTTTTATTCCGAGTGCAT 58.750 37.500 0.00 0.00 0.00 3.96
3095 5953 5.123186 TGGTACTTTTTATTCCGAGTGCATG 59.877 40.000 0.00 0.00 0.00 4.06
3096 5954 4.701956 ACTTTTTATTCCGAGTGCATGG 57.298 40.909 0.00 0.00 0.00 3.66
3097 5955 3.119495 ACTTTTTATTCCGAGTGCATGGC 60.119 43.478 0.00 0.00 0.00 4.40
3098 5956 2.121291 TTTATTCCGAGTGCATGGCA 57.879 45.000 0.00 0.00 35.60 4.92
3099 5957 2.346766 TTATTCCGAGTGCATGGCAT 57.653 45.000 0.00 0.00 41.91 4.40
3100 5958 2.346766 TATTCCGAGTGCATGGCATT 57.653 45.000 0.00 0.00 41.91 3.56
3101 5959 1.477553 ATTCCGAGTGCATGGCATTT 58.522 45.000 0.00 0.00 41.91 2.32
3102 5960 1.255882 TTCCGAGTGCATGGCATTTT 58.744 45.000 0.00 0.00 41.91 1.82
3103 5961 1.255882 TCCGAGTGCATGGCATTTTT 58.744 45.000 0.00 0.00 41.91 1.94
3104 5962 2.441410 TCCGAGTGCATGGCATTTTTA 58.559 42.857 0.00 0.00 41.91 1.52
3105 5963 3.023119 TCCGAGTGCATGGCATTTTTAT 58.977 40.909 0.00 0.00 41.91 1.40
3106 5964 3.446873 TCCGAGTGCATGGCATTTTTATT 59.553 39.130 0.00 0.00 41.91 1.40
3107 5965 4.081752 TCCGAGTGCATGGCATTTTTATTT 60.082 37.500 0.00 0.00 41.91 1.40
3108 5966 5.126222 TCCGAGTGCATGGCATTTTTATTTA 59.874 36.000 0.00 0.00 41.91 1.40
3109 5967 5.809562 CCGAGTGCATGGCATTTTTATTTAA 59.190 36.000 0.00 0.00 41.91 1.52
3110 5968 6.479660 CCGAGTGCATGGCATTTTTATTTAAT 59.520 34.615 0.00 0.00 41.91 1.40
3111 5969 7.651304 CCGAGTGCATGGCATTTTTATTTAATA 59.349 33.333 0.00 0.00 41.91 0.98
3112 5970 9.029243 CGAGTGCATGGCATTTTTATTTAATAA 57.971 29.630 0.00 0.00 41.91 1.40
3164 6022 8.137745 AGGATGGCATTTTAATTTTTGAGAGA 57.862 30.769 0.00 0.00 0.00 3.10
3165 6023 8.596293 AGGATGGCATTTTAATTTTTGAGAGAA 58.404 29.630 0.00 0.00 0.00 2.87
3166 6024 9.387257 GGATGGCATTTTAATTTTTGAGAGAAT 57.613 29.630 0.00 0.00 0.00 2.40
3168 6026 8.550710 TGGCATTTTAATTTTTGAGAGAATGG 57.449 30.769 0.00 0.00 0.00 3.16
3169 6027 8.373981 TGGCATTTTAATTTTTGAGAGAATGGA 58.626 29.630 0.00 0.00 0.00 3.41
3170 6028 9.218440 GGCATTTTAATTTTTGAGAGAATGGAA 57.782 29.630 0.00 0.00 0.00 3.53
3207 6065 8.938906 CAAATAGGATGGCATATTTTTAATGGC 58.061 33.333 0.00 2.95 46.90 4.40
3214 6072 6.774354 GGCATATTTTTAATGGCATGACAG 57.226 37.500 7.63 0.00 46.21 3.51
3215 6073 6.282930 GGCATATTTTTAATGGCATGACAGT 58.717 36.000 7.63 7.19 46.21 3.55
3216 6074 6.762661 GGCATATTTTTAATGGCATGACAGTT 59.237 34.615 6.90 4.09 46.21 3.16
3217 6075 7.280652 GGCATATTTTTAATGGCATGACAGTTT 59.719 33.333 6.90 0.00 46.21 2.66
3218 6076 8.117988 GCATATTTTTAATGGCATGACAGTTTG 58.882 33.333 6.90 0.00 0.00 2.93
3219 6077 9.153721 CATATTTTTAATGGCATGACAGTTTGT 57.846 29.630 6.90 0.00 0.00 2.83
3220 6078 9.723601 ATATTTTTAATGGCATGACAGTTTGTT 57.276 25.926 6.90 0.00 0.00 2.83
3221 6079 7.856145 TTTTTAATGGCATGACAGTTTGTTT 57.144 28.000 6.90 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 7.987458 CGGTAGTAGGATGCATTTTCCATATAT 59.013 37.037 0.00 0.00 35.59 0.86
22 23 7.327975 CGGTAGTAGGATGCATTTTCCATATA 58.672 38.462 0.00 0.00 35.59 0.86
23 24 6.173339 CGGTAGTAGGATGCATTTTCCATAT 58.827 40.000 0.00 0.00 35.59 1.78
24 25 5.512404 CCGGTAGTAGGATGCATTTTCCATA 60.512 44.000 0.00 0.00 35.59 2.74
25 26 4.389374 CGGTAGTAGGATGCATTTTCCAT 58.611 43.478 0.00 0.00 35.59 3.41
26 27 3.433031 CCGGTAGTAGGATGCATTTTCCA 60.433 47.826 0.00 0.00 35.59 3.53
27 28 3.139077 CCGGTAGTAGGATGCATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
28 29 3.139077 CCCGGTAGTAGGATGCATTTTC 58.861 50.000 0.00 0.00 0.00 2.29
29 30 2.508300 ACCCGGTAGTAGGATGCATTTT 59.492 45.455 0.00 0.00 0.00 1.82
30 31 2.124411 ACCCGGTAGTAGGATGCATTT 58.876 47.619 0.00 0.00 0.00 2.32
31 32 1.416401 CACCCGGTAGTAGGATGCATT 59.584 52.381 0.00 0.00 0.00 3.56
32 33 1.048601 CACCCGGTAGTAGGATGCAT 58.951 55.000 0.00 0.00 0.00 3.96
33 34 0.324923 ACACCCGGTAGTAGGATGCA 60.325 55.000 0.00 0.00 0.00 3.96
34 35 1.612463 CTACACCCGGTAGTAGGATGC 59.388 57.143 18.15 0.00 43.73 3.91
50 51 9.209048 AGTATATGAGAAATGGGTGTAACTACA 57.791 33.333 0.00 0.00 36.74 2.74
57 58 8.884323 ACATGATAGTATATGAGAAATGGGTGT 58.116 33.333 0.00 0.00 0.00 4.16
58 59 9.159364 CACATGATAGTATATGAGAAATGGGTG 57.841 37.037 0.00 0.00 0.00 4.61
59 60 8.324306 CCACATGATAGTATATGAGAAATGGGT 58.676 37.037 0.00 0.00 0.00 4.51
60 61 8.324306 ACCACATGATAGTATATGAGAAATGGG 58.676 37.037 0.00 0.00 0.00 4.00
127 128 9.298250 ACTCGCTTTGGAGTATCTTAGATATAA 57.702 33.333 5.15 0.00 45.14 0.98
128 129 8.865420 ACTCGCTTTGGAGTATCTTAGATATA 57.135 34.615 5.15 0.00 45.14 0.86
129 130 7.768807 ACTCGCTTTGGAGTATCTTAGATAT 57.231 36.000 5.15 0.00 45.14 1.63
130 131 7.584122 AACTCGCTTTGGAGTATCTTAGATA 57.416 36.000 0.00 0.00 46.21 1.98
131 132 6.472686 AACTCGCTTTGGAGTATCTTAGAT 57.527 37.500 0.00 0.00 46.21 1.98
132 133 5.916661 AACTCGCTTTGGAGTATCTTAGA 57.083 39.130 0.00 0.00 46.21 2.10
133 134 7.168302 CACATAACTCGCTTTGGAGTATCTTAG 59.832 40.741 0.00 0.00 46.21 2.18
134 135 6.978659 CACATAACTCGCTTTGGAGTATCTTA 59.021 38.462 0.00 0.00 46.21 2.10
135 136 5.812642 CACATAACTCGCTTTGGAGTATCTT 59.187 40.000 0.00 0.00 46.21 2.40
136 137 5.127194 TCACATAACTCGCTTTGGAGTATCT 59.873 40.000 0.00 0.00 46.21 1.98
137 138 5.348986 TCACATAACTCGCTTTGGAGTATC 58.651 41.667 0.00 0.00 46.21 2.24
138 139 5.339008 TCACATAACTCGCTTTGGAGTAT 57.661 39.130 0.00 0.00 46.21 2.12
139 140 4.794278 TCACATAACTCGCTTTGGAGTA 57.206 40.909 0.00 0.00 46.21 2.59
141 142 5.356882 TTTTCACATAACTCGCTTTGGAG 57.643 39.130 0.00 0.00 39.97 3.86
142 143 5.759506 TTTTTCACATAACTCGCTTTGGA 57.240 34.783 0.00 0.00 0.00 3.53
209 210 9.646336 GCATACTCCTTTTTACGTACAAATATG 57.354 33.333 15.08 15.08 0.00 1.78
210 211 9.609346 AGCATACTCCTTTTTACGTACAAATAT 57.391 29.630 7.32 0.93 0.00 1.28
211 212 9.090692 GAGCATACTCCTTTTTACGTACAAATA 57.909 33.333 7.32 0.00 36.90 1.40
212 213 7.604927 TGAGCATACTCCTTTTTACGTACAAAT 59.395 33.333 7.32 0.00 42.74 2.32
213 214 6.930164 TGAGCATACTCCTTTTTACGTACAAA 59.070 34.615 6.71 6.71 42.74 2.83
214 215 6.457355 TGAGCATACTCCTTTTTACGTACAA 58.543 36.000 0.00 0.00 42.74 2.41
215 216 6.028146 TGAGCATACTCCTTTTTACGTACA 57.972 37.500 0.00 0.00 42.74 2.90
216 217 6.956299 TTGAGCATACTCCTTTTTACGTAC 57.044 37.500 0.00 0.00 42.74 3.67
217 218 7.441760 TGTTTTGAGCATACTCCTTTTTACGTA 59.558 33.333 0.00 0.00 42.74 3.57
218 219 6.261381 TGTTTTGAGCATACTCCTTTTTACGT 59.739 34.615 0.00 0.00 42.74 3.57
219 220 6.664515 TGTTTTGAGCATACTCCTTTTTACG 58.335 36.000 0.00 0.00 42.74 3.18
220 221 9.556030 GTATGTTTTGAGCATACTCCTTTTTAC 57.444 33.333 7.43 0.00 43.03 2.01
231 232 9.673454 CGTAGTATGTAGTATGTTTTGAGCATA 57.327 33.333 0.00 0.00 0.00 3.14
232 233 8.195436 ACGTAGTATGTAGTATGTTTTGAGCAT 58.805 33.333 0.00 0.00 41.94 3.79
233 234 7.541162 ACGTAGTATGTAGTATGTTTTGAGCA 58.459 34.615 0.00 0.00 41.94 4.26
234 235 7.982371 ACGTAGTATGTAGTATGTTTTGAGC 57.018 36.000 0.00 0.00 41.94 4.26
283 284 9.674824 GCGTAGTATGTAGTATGTAAGAATGTT 57.325 33.333 0.00 0.00 0.00 2.71
284 285 8.013947 CGCGTAGTATGTAGTATGTAAGAATGT 58.986 37.037 0.00 0.00 0.00 2.71
285 286 8.013947 ACGCGTAGTATGTAGTATGTAAGAATG 58.986 37.037 11.67 0.00 0.00 2.67
286 287 8.092521 ACGCGTAGTATGTAGTATGTAAGAAT 57.907 34.615 11.67 0.00 0.00 2.40
287 288 7.482654 ACGCGTAGTATGTAGTATGTAAGAA 57.517 36.000 11.67 0.00 0.00 2.52
288 289 7.651704 TGTACGCGTAGTATGTAGTATGTAAGA 59.348 37.037 21.25 0.00 37.69 2.10
289 290 7.787084 TGTACGCGTAGTATGTAGTATGTAAG 58.213 38.462 21.25 0.00 37.69 2.34
290 291 7.707774 TGTACGCGTAGTATGTAGTATGTAA 57.292 36.000 21.25 0.00 37.69 2.41
291 292 7.889589 ATGTACGCGTAGTATGTAGTATGTA 57.110 36.000 21.25 0.00 37.69 2.29
292 293 6.791887 ATGTACGCGTAGTATGTAGTATGT 57.208 37.500 21.25 0.00 37.69 2.29
293 294 7.957615 AGTATGTACGCGTAGTATGTAGTATG 58.042 38.462 21.25 0.00 37.69 2.39
294 295 8.031864 AGAGTATGTACGCGTAGTATGTAGTAT 58.968 37.037 21.25 5.95 37.69 2.12
295 296 7.371159 AGAGTATGTACGCGTAGTATGTAGTA 58.629 38.462 21.25 0.00 37.69 1.82
296 297 6.219473 AGAGTATGTACGCGTAGTATGTAGT 58.781 40.000 21.25 10.64 37.69 2.73
297 298 6.183360 GGAGAGTATGTACGCGTAGTATGTAG 60.183 46.154 21.25 0.00 37.69 2.74
298 299 5.635280 GGAGAGTATGTACGCGTAGTATGTA 59.365 44.000 21.25 5.63 37.69 2.29
299 300 4.450419 GGAGAGTATGTACGCGTAGTATGT 59.550 45.833 21.25 9.14 37.69 2.29
300 301 4.433936 CGGAGAGTATGTACGCGTAGTATG 60.434 50.000 21.25 0.37 37.69 2.39
301 302 3.677121 CGGAGAGTATGTACGCGTAGTAT 59.323 47.826 21.25 18.64 37.69 2.12
302 303 3.052745 CGGAGAGTATGTACGCGTAGTA 58.947 50.000 21.25 12.49 0.00 1.82
303 304 1.863454 CGGAGAGTATGTACGCGTAGT 59.137 52.381 21.25 14.01 0.00 2.73
304 305 2.130395 TCGGAGAGTATGTACGCGTAG 58.870 52.381 21.25 3.74 0.00 3.51
305 306 2.223537 TCGGAGAGTATGTACGCGTA 57.776 50.000 16.41 16.41 0.00 4.42
306 307 1.590932 ATCGGAGAGTATGTACGCGT 58.409 50.000 19.17 19.17 43.63 6.01
307 308 4.337985 AATATCGGAGAGTATGTACGCG 57.662 45.455 3.53 3.53 43.63 6.01
308 309 8.362860 TCTATAATATCGGAGAGTATGTACGC 57.637 38.462 3.11 0.00 43.63 4.42
330 331 9.836864 TGTTTCATACGTTCTAGGTAGTATCTA 57.163 33.333 0.00 0.00 0.00 1.98
331 332 8.743085 TGTTTCATACGTTCTAGGTAGTATCT 57.257 34.615 0.00 0.00 0.00 1.98
332 333 9.793252 TTTGTTTCATACGTTCTAGGTAGTATC 57.207 33.333 0.00 0.00 0.00 2.24
334 335 9.630098 CTTTTGTTTCATACGTTCTAGGTAGTA 57.370 33.333 0.00 0.00 0.00 1.82
335 336 8.146412 ACTTTTGTTTCATACGTTCTAGGTAGT 58.854 33.333 0.00 0.00 0.00 2.73
336 337 8.433126 CACTTTTGTTTCATACGTTCTAGGTAG 58.567 37.037 0.00 0.00 0.00 3.18
337 338 7.385752 CCACTTTTGTTTCATACGTTCTAGGTA 59.614 37.037 0.00 0.00 0.00 3.08
338 339 6.204108 CCACTTTTGTTTCATACGTTCTAGGT 59.796 38.462 0.00 0.00 0.00 3.08
339 340 6.348213 CCCACTTTTGTTTCATACGTTCTAGG 60.348 42.308 0.00 0.00 0.00 3.02
340 341 6.425721 TCCCACTTTTGTTTCATACGTTCTAG 59.574 38.462 0.00 0.00 0.00 2.43
341 342 6.289834 TCCCACTTTTGTTTCATACGTTCTA 58.710 36.000 0.00 0.00 0.00 2.10
342 343 5.127491 TCCCACTTTTGTTTCATACGTTCT 58.873 37.500 0.00 0.00 0.00 3.01
343 344 5.008316 ACTCCCACTTTTGTTTCATACGTTC 59.992 40.000 0.00 0.00 0.00 3.95
344 345 4.885325 ACTCCCACTTTTGTTTCATACGTT 59.115 37.500 0.00 0.00 0.00 3.99
345 346 4.457466 ACTCCCACTTTTGTTTCATACGT 58.543 39.130 0.00 0.00 0.00 3.57
346 347 6.204108 AGTTACTCCCACTTTTGTTTCATACG 59.796 38.462 0.00 0.00 0.00 3.06
347 348 7.506328 AGTTACTCCCACTTTTGTTTCATAC 57.494 36.000 0.00 0.00 0.00 2.39
348 349 8.212312 TGTAGTTACTCCCACTTTTGTTTCATA 58.788 33.333 0.00 0.00 0.00 2.15
349 350 7.012989 GTGTAGTTACTCCCACTTTTGTTTCAT 59.987 37.037 7.55 0.00 0.00 2.57
350 351 6.316890 GTGTAGTTACTCCCACTTTTGTTTCA 59.683 38.462 7.55 0.00 0.00 2.69
351 352 6.238566 GGTGTAGTTACTCCCACTTTTGTTTC 60.239 42.308 12.62 0.00 34.61 2.78
352 353 5.591472 GGTGTAGTTACTCCCACTTTTGTTT 59.409 40.000 12.62 0.00 34.61 2.83
353 354 5.128205 GGTGTAGTTACTCCCACTTTTGTT 58.872 41.667 12.62 0.00 34.61 2.83
354 355 4.711399 GGTGTAGTTACTCCCACTTTTGT 58.289 43.478 12.62 0.00 34.61 2.83
371 372 3.668141 TGATTCCTACTACCGGGTGTA 57.332 47.619 10.66 7.54 0.00 2.90
372 373 2.498885 GTTGATTCCTACTACCGGGTGT 59.501 50.000 10.66 6.62 0.00 4.16
373 374 2.498481 TGTTGATTCCTACTACCGGGTG 59.502 50.000 10.66 0.00 0.00 4.61
374 375 2.764572 CTGTTGATTCCTACTACCGGGT 59.235 50.000 6.32 4.46 0.00 5.28
375 376 2.764572 ACTGTTGATTCCTACTACCGGG 59.235 50.000 6.32 0.00 0.00 5.73
376 377 4.643784 ACTACTGTTGATTCCTACTACCGG 59.356 45.833 0.00 0.00 0.00 5.28
377 378 5.356190 TCACTACTGTTGATTCCTACTACCG 59.644 44.000 0.00 0.00 0.00 4.02
378 379 6.770746 TCACTACTGTTGATTCCTACTACC 57.229 41.667 0.00 0.00 0.00 3.18
379 380 9.654663 ATTTTCACTACTGTTGATTCCTACTAC 57.345 33.333 0.00 0.00 0.00 2.73
428 429 9.875691 ACAAGGGCAATTAATTTTCTCTATTTC 57.124 29.630 0.00 0.00 0.00 2.17
497 499 6.452244 AGCAAATTTTATCGCTGTTCAAAC 57.548 33.333 0.30 0.00 32.33 2.93
546 548 5.163519 GCCATCATGGTGTAAAGCTAACATT 60.164 40.000 5.31 0.00 40.46 2.71
549 551 3.066760 GGCCATCATGGTGTAAAGCTAAC 59.933 47.826 5.31 0.00 40.46 2.34
658 660 5.816919 ACAAGGAAATAAATTATGTCGCGG 58.183 37.500 6.13 0.00 0.00 6.46
793 797 4.110758 ACATACCCCCATACAGGTATAGGT 59.889 45.833 1.55 10.81 45.57 3.08
805 809 6.402981 AGACTTCTTTTAACATACCCCCAT 57.597 37.500 0.00 0.00 0.00 4.00
890 894 8.328758 ACATGGTCTTAATTTCTTACCTCATCA 58.671 33.333 0.00 0.00 0.00 3.07
919 923 6.964370 CGACACATCAACTTTTTGAACAGTTA 59.036 34.615 0.00 0.00 45.01 2.24
1003 1014 6.732896 TTTCAGAACTTCAGAAGTCTAGGT 57.267 37.500 16.44 0.00 41.91 3.08
1133 1148 2.918712 ATGTGAAGATGGATCGGGTC 57.081 50.000 0.00 0.00 0.00 4.46
1136 1151 4.214971 GGATCAAATGTGAAGATGGATCGG 59.785 45.833 0.00 0.00 37.30 4.18
1321 1336 3.984508 TCCACGTCGAAGAAGATATCC 57.015 47.619 5.05 0.00 38.59 2.59
1324 1339 2.159282 GCCTTCCACGTCGAAGAAGATA 60.159 50.000 22.44 0.00 41.57 1.98
1504 1519 0.895100 ACCTTACGCCGACCACAGTA 60.895 55.000 0.00 0.00 0.00 2.74
1507 1522 1.005867 GAACCTTACGCCGACCACA 60.006 57.895 0.00 0.00 0.00 4.17
1685 1700 1.005748 CGGAGACAGTGCAGCTCAA 60.006 57.895 9.57 0.00 0.00 3.02
1702 1717 1.597663 AGTTGCGGTTTTCTGAGAACG 59.402 47.619 0.00 0.00 0.00 3.95
1711 1726 1.768112 CGGACGACAGTTGCGGTTTT 61.768 55.000 0.00 0.00 0.00 2.43
1738 1753 0.259938 GGGAAGGAAGCCATGGATGT 59.740 55.000 18.40 0.00 0.00 3.06
1756 1774 1.858091 AAGCTTATGCAGATCGACGG 58.142 50.000 0.00 0.00 42.74 4.79
1779 1797 1.210931 CGCGTCGACCCTCAAAGTA 59.789 57.895 10.58 0.00 0.00 2.24
1780 1798 2.049433 CGCGTCGACCCTCAAAGT 60.049 61.111 10.58 0.00 0.00 2.66
1781 1799 3.479269 GCGCGTCGACCCTCAAAG 61.479 66.667 10.58 0.00 0.00 2.77
1844 1862 3.198068 CAACCACATCGATCCGAATTCT 58.802 45.455 3.52 0.00 39.99 2.40
1876 1894 3.055385 ACCAGTCACCATACATACGCTTT 60.055 43.478 0.00 0.00 0.00 3.51
1887 1907 4.974645 TTAGTTCTCAACCAGTCACCAT 57.025 40.909 0.00 0.00 0.00 3.55
1918 1954 1.588667 GGGCACAAGCACAAACACG 60.589 57.895 0.00 0.00 45.91 4.49
1928 1964 3.056678 TCAACAAATAGCATGGGCACAAG 60.057 43.478 0.00 0.00 44.61 3.16
1945 1981 1.553195 CCGTGTCGTTCGCATCAACA 61.553 55.000 0.00 0.00 0.00 3.33
1948 1984 1.300311 AACCGTGTCGTTCGCATCA 60.300 52.632 0.00 0.00 0.00 3.07
1981 2017 0.179004 TGTGGCAGGACGAAATGGTT 60.179 50.000 0.00 0.00 0.00 3.67
1989 2025 1.138859 TGGAGAATATGTGGCAGGACG 59.861 52.381 0.00 0.00 0.00 4.79
1992 2028 1.492176 ACCTGGAGAATATGTGGCAGG 59.508 52.381 0.00 0.00 34.94 4.85
1993 2029 2.486191 GGACCTGGAGAATATGTGGCAG 60.486 54.545 0.00 0.00 0.00 4.85
1996 2032 3.931907 TTGGACCTGGAGAATATGTGG 57.068 47.619 0.00 0.00 0.00 4.17
2012 2048 5.794893 AGTTGTGCACTAGATCCCTTTGGA 61.795 45.833 19.41 0.00 38.57 3.53
2020 2056 5.294552 GGAAATGGTAGTTGTGCACTAGATC 59.705 44.000 19.41 2.45 38.77 2.75
2061 2097 3.002862 TGATACACCAACTTTGCGTGTTC 59.997 43.478 16.36 14.08 40.50 3.18
2091 2127 7.113658 TGAACTCGCTCTATTTCCTTCTATT 57.886 36.000 0.00 0.00 0.00 1.73
2105 2141 1.137086 TGCCCTCTTATGAACTCGCTC 59.863 52.381 0.00 0.00 0.00 5.03
2107 2143 1.291132 GTGCCCTCTTATGAACTCGC 58.709 55.000 0.00 0.00 0.00 5.03
2108 2144 2.672961 TGTGCCCTCTTATGAACTCG 57.327 50.000 0.00 0.00 0.00 4.18
2113 2149 3.346315 CATGTGTTGTGCCCTCTTATGA 58.654 45.455 0.00 0.00 0.00 2.15
2153 2189 1.677633 GTACCATGCCCACGCCTTT 60.678 57.895 0.00 0.00 0.00 3.11
2175 2211 1.473080 GCATCCCTTGTCTCTCTGCTC 60.473 57.143 0.00 0.00 0.00 4.26
2190 2226 3.572255 TGTTTGGTTTGGTCTAAGCATCC 59.428 43.478 0.00 0.00 35.65 3.51
2193 2229 3.882888 CTCTGTTTGGTTTGGTCTAAGCA 59.117 43.478 0.00 0.00 34.02 3.91
2194 2230 4.134563 TCTCTGTTTGGTTTGGTCTAAGC 58.865 43.478 0.00 0.00 0.00 3.09
2195 2231 6.693315 TTTCTCTGTTTGGTTTGGTCTAAG 57.307 37.500 0.00 0.00 0.00 2.18
2196 2232 7.469537 TTTTTCTCTGTTTGGTTTGGTCTAA 57.530 32.000 0.00 0.00 0.00 2.10
2198 2234 5.993748 TTTTTCTCTGTTTGGTTTGGTCT 57.006 34.783 0.00 0.00 0.00 3.85
2224 2260 5.754890 GGAGGTGTTCGACTTTTTAGTTGTA 59.245 40.000 0.00 0.00 0.00 2.41
2238 2274 0.036765 TTTGGATCGGGAGGTGTTCG 60.037 55.000 0.00 0.00 0.00 3.95
2249 2286 1.525995 CATCCCCGGGTTTGGATCG 60.526 63.158 21.85 0.35 39.36 3.69
2252 2289 2.938798 AGCATCCCCGGGTTTGGA 60.939 61.111 21.85 10.03 34.54 3.53
2260 2297 4.161295 TTCCTCGCAGCATCCCCG 62.161 66.667 0.00 0.00 0.00 5.73
2274 2311 6.199937 TCTTGAAGATGCTATTTTGCTTCC 57.800 37.500 0.00 0.00 37.70 3.46
2275 2312 6.750963 CCTTCTTGAAGATGCTATTTTGCTTC 59.249 38.462 11.53 0.00 37.38 3.86
2282 2319 4.688321 GCTCCCCTTCTTGAAGATGCTATT 60.688 45.833 11.53 0.00 0.00 1.73
2288 2325 3.629087 CATTGCTCCCCTTCTTGAAGAT 58.371 45.455 11.53 0.00 0.00 2.40
2305 2342 1.328680 CCACTTCTTCGGATCGCATTG 59.671 52.381 0.00 0.00 0.00 2.82
2306 2343 1.656652 CCACTTCTTCGGATCGCATT 58.343 50.000 0.00 0.00 0.00 3.56
2308 2345 1.218047 CCCACTTCTTCGGATCGCA 59.782 57.895 0.00 0.00 0.00 5.10
2322 2359 9.520204 CTTTATCATGTGTTGAAATATTCCCAC 57.480 33.333 0.00 0.00 38.03 4.61
2323 2360 8.694540 CCTTTATCATGTGTTGAAATATTCCCA 58.305 33.333 0.00 0.00 38.03 4.37
2331 2368 8.028354 CACAATAGCCTTTATCATGTGTTGAAA 58.972 33.333 0.00 0.00 38.03 2.69
2332 2369 7.537715 CACAATAGCCTTTATCATGTGTTGAA 58.462 34.615 0.00 0.00 38.03 2.69
2333 2370 6.404623 GCACAATAGCCTTTATCATGTGTTGA 60.405 38.462 0.00 0.00 39.02 3.18
2334 2371 5.745294 GCACAATAGCCTTTATCATGTGTTG 59.255 40.000 0.00 0.00 39.02 3.33
2335 2372 5.418524 TGCACAATAGCCTTTATCATGTGTT 59.581 36.000 0.00 0.00 39.02 3.32
2336 2373 4.949238 TGCACAATAGCCTTTATCATGTGT 59.051 37.500 0.00 0.00 39.02 3.72
2338 2375 5.450965 GCTTGCACAATAGCCTTTATCATGT 60.451 40.000 0.00 0.00 0.00 3.21
2339 2376 4.980434 GCTTGCACAATAGCCTTTATCATG 59.020 41.667 0.00 0.00 0.00 3.07
2340 2377 5.192327 GCTTGCACAATAGCCTTTATCAT 57.808 39.130 0.00 0.00 0.00 2.45
2349 5123 1.176527 TTGAGGGCTTGCACAATAGC 58.823 50.000 0.00 0.00 36.66 2.97
2354 5128 4.179361 CCTTTGAGGGCTTGCACA 57.821 55.556 0.00 0.00 0.00 4.57
2366 5140 6.535963 AAGAAATCTTCCCAATAGCCTTTG 57.464 37.500 0.00 0.00 0.00 2.77
2370 5144 4.342378 GGGAAAGAAATCTTCCCAATAGCC 59.658 45.833 14.48 0.00 40.22 3.93
2371 5145 4.036852 CGGGAAAGAAATCTTCCCAATAGC 59.963 45.833 18.34 0.00 40.36 2.97
2373 5147 4.017867 ACCGGGAAAGAAATCTTCCCAATA 60.018 41.667 18.34 0.00 40.36 1.90
2375 5149 2.109304 ACCGGGAAAGAAATCTTCCCAA 59.891 45.455 18.34 0.00 40.36 4.12
2376 5150 1.708551 ACCGGGAAAGAAATCTTCCCA 59.291 47.619 18.34 0.00 40.36 4.37
2408 5263 3.185455 ACTACTTGGGAAGCTTCTGGAT 58.815 45.455 25.05 10.48 0.00 3.41
2412 5267 4.584743 CCAAAAACTACTTGGGAAGCTTCT 59.415 41.667 25.05 8.34 39.82 2.85
2413 5268 4.871513 CCAAAAACTACTTGGGAAGCTTC 58.128 43.478 18.54 18.54 39.82 3.86
2414 5269 4.937201 CCAAAAACTACTTGGGAAGCTT 57.063 40.909 0.00 0.00 39.82 3.74
2421 5276 4.584743 AGAAGCTTCCCAAAAACTACTTGG 59.415 41.667 22.81 0.00 42.62 3.61
2422 5277 5.774498 AGAAGCTTCCCAAAAACTACTTG 57.226 39.130 22.81 0.00 0.00 3.16
2423 5278 6.838382 TCTAGAAGCTTCCCAAAAACTACTT 58.162 36.000 22.81 2.12 0.00 2.24
2424 5279 6.435292 TCTAGAAGCTTCCCAAAAACTACT 57.565 37.500 22.81 2.33 0.00 2.57
2425 5280 7.506328 TTTCTAGAAGCTTCCCAAAAACTAC 57.494 36.000 22.81 0.00 0.00 2.73
2426 5281 8.576442 CAATTTCTAGAAGCTTCCCAAAAACTA 58.424 33.333 22.81 5.33 0.00 2.24
2434 5289 6.749139 ACAAAACAATTTCTAGAAGCTTCCC 58.251 36.000 22.81 0.00 0.00 3.97
2450 5305 6.425417 GTCCAGAAAACCAAGAAACAAAACAA 59.575 34.615 0.00 0.00 0.00 2.83
2451 5306 5.929415 GTCCAGAAAACCAAGAAACAAAACA 59.071 36.000 0.00 0.00 0.00 2.83
2457 5312 3.490933 GCCAGTCCAGAAAACCAAGAAAC 60.491 47.826 0.00 0.00 0.00 2.78
2470 5325 1.756538 ACCAAACAAAAGCCAGTCCAG 59.243 47.619 0.00 0.00 0.00 3.86
2475 5330 3.755905 ACCAAAAACCAAACAAAAGCCAG 59.244 39.130 0.00 0.00 0.00 4.85
2479 5334 8.864069 AAGAAAAACCAAAAACCAAACAAAAG 57.136 26.923 0.00 0.00 0.00 2.27
2557 5415 9.965824 GAAAAGGTTCAGTCTTATGAAAAATGA 57.034 29.630 0.00 0.00 40.72 2.57
2558 5416 9.196552 GGAAAAGGTTCAGTCTTATGAAAAATG 57.803 33.333 0.00 0.00 40.72 2.32
2559 5417 8.923270 TGGAAAAGGTTCAGTCTTATGAAAAAT 58.077 29.630 0.00 0.00 40.72 1.82
2560 5418 8.299990 TGGAAAAGGTTCAGTCTTATGAAAAA 57.700 30.769 0.00 0.00 40.72 1.94
2570 5428 9.710900 AATCATAAATTTGGAAAAGGTTCAGTC 57.289 29.630 0.00 0.00 35.25 3.51
2609 5467 8.599624 ACATGTTTTCCTAAAAGGATCATGAT 57.400 30.769 25.40 8.25 45.34 2.45
2650 5508 9.778993 AGATCGTTGATCAATAAAAAGTTCATG 57.221 29.630 12.12 0.00 41.12 3.07
2700 5558 5.967088 TGGAAAAAGTTCACCGATTTTCAA 58.033 33.333 10.77 0.00 41.34 2.69
2702 5560 6.895607 TTTGGAAAAAGTTCACCGATTTTC 57.104 33.333 0.00 0.00 39.73 2.29
2703 5561 7.550906 TGAATTTGGAAAAAGTTCACCGATTTT 59.449 29.630 0.00 0.00 35.25 1.82
2710 5568 6.530181 AGTTCGTGAATTTGGAAAAAGTTCAC 59.470 34.615 13.40 13.40 43.04 3.18
2729 5587 5.521010 TCGCGGAATTTGATATAAAGTTCGT 59.479 36.000 6.13 0.00 29.18 3.85
2730 5588 5.969741 TCGCGGAATTTGATATAAAGTTCG 58.030 37.500 6.13 0.00 29.18 3.95
2732 5590 6.317893 AGGTTCGCGGAATTTGATATAAAGTT 59.682 34.615 6.13 0.00 0.00 2.66
2735 5593 6.687081 AAGGTTCGCGGAATTTGATATAAA 57.313 33.333 6.13 0.00 0.00 1.40
2746 5604 3.551250 GGATTTGAAAAAGGTTCGCGGAA 60.551 43.478 6.13 0.00 0.00 4.30
2751 5609 4.923281 GTCCATGGATTTGAAAAAGGTTCG 59.077 41.667 19.62 0.00 0.00 3.95
2781 5639 7.408910 GGTTTGACCAAAACTCATTGATTTTG 58.591 34.615 17.88 17.88 46.27 2.44
2782 5640 6.542005 GGGTTTGACCAAAACTCATTGATTTT 59.458 34.615 9.98 0.00 46.84 1.82
2783 5641 6.054941 GGGTTTGACCAAAACTCATTGATTT 58.945 36.000 9.98 0.00 46.84 2.17
2784 5642 5.610398 GGGTTTGACCAAAACTCATTGATT 58.390 37.500 9.98 0.00 46.84 2.57
2785 5643 5.213891 GGGTTTGACCAAAACTCATTGAT 57.786 39.130 9.98 0.00 46.84 2.57
2786 5644 4.664150 GGGTTTGACCAAAACTCATTGA 57.336 40.909 9.98 0.00 46.84 2.57
2792 5650 4.482990 AGATCATGGGTTTGACCAAAACT 58.517 39.130 9.98 0.00 46.27 2.66
2793 5651 4.871933 AGATCATGGGTTTGACCAAAAC 57.128 40.909 2.08 2.08 45.13 2.43
2794 5652 5.885449 AAAGATCATGGGTTTGACCAAAA 57.115 34.783 0.00 0.00 45.13 2.44
2795 5653 7.552050 AATAAAGATCATGGGTTTGACCAAA 57.448 32.000 0.00 0.00 45.13 3.28
2796 5654 7.552050 AAATAAAGATCATGGGTTTGACCAA 57.448 32.000 0.00 0.00 45.13 3.67
2797 5655 7.552050 AAAATAAAGATCATGGGTTTGACCA 57.448 32.000 0.00 0.00 46.24 4.02
2798 5656 7.275560 CGAAAAATAAAGATCATGGGTTTGACC 59.724 37.037 0.00 0.00 37.60 4.02
2799 5657 8.026607 TCGAAAAATAAAGATCATGGGTTTGAC 58.973 33.333 0.00 0.00 0.00 3.18
2800 5658 8.116651 TCGAAAAATAAAGATCATGGGTTTGA 57.883 30.769 0.00 0.00 0.00 2.69
2801 5659 8.755696 TTCGAAAAATAAAGATCATGGGTTTG 57.244 30.769 0.00 0.00 0.00 2.93
2802 5660 9.942850 ATTTCGAAAAATAAAGATCATGGGTTT 57.057 25.926 15.66 0.00 33.27 3.27
2843 5701 9.933723 ACAATTAAGAATTTGAAGAAGATTGGG 57.066 29.630 0.00 0.00 0.00 4.12
2882 5740 9.786105 GTGTTCATGGATTTTGAAAAATGTTTT 57.214 25.926 5.76 0.00 38.64 2.43
2883 5741 9.176460 AGTGTTCATGGATTTTGAAAAATGTTT 57.824 25.926 5.76 0.00 38.64 2.83
2884 5742 8.735692 AGTGTTCATGGATTTTGAAAAATGTT 57.264 26.923 5.76 0.00 38.64 2.71
2885 5743 8.735692 AAGTGTTCATGGATTTTGAAAAATGT 57.264 26.923 5.76 0.00 38.64 2.71
2886 5744 9.654417 GAAAGTGTTCATGGATTTTGAAAAATG 57.346 29.630 5.76 0.00 35.00 2.32
2887 5745 9.393512 TGAAAGTGTTCATGGATTTTGAAAAAT 57.606 25.926 0.68 0.68 38.88 1.82
2924 5782 5.977725 TCGAAAATGTGCATCGGTTTAAAAA 59.022 32.000 6.80 0.00 37.20 1.94
2925 5783 5.520632 TCGAAAATGTGCATCGGTTTAAAA 58.479 33.333 6.80 0.00 37.20 1.52
2926 5784 5.109662 TCGAAAATGTGCATCGGTTTAAA 57.890 34.783 6.80 0.00 37.20 1.52
2927 5785 4.750952 TCGAAAATGTGCATCGGTTTAA 57.249 36.364 6.80 0.00 37.20 1.52
2928 5786 4.750952 TTCGAAAATGTGCATCGGTTTA 57.249 36.364 6.80 0.00 37.20 2.01
2929 5787 3.634568 TTCGAAAATGTGCATCGGTTT 57.365 38.095 6.80 0.00 37.20 3.27
2930 5788 3.634568 TTTCGAAAATGTGCATCGGTT 57.365 38.095 8.44 0.00 37.20 4.44
2931 5789 3.848272 ATTTCGAAAATGTGCATCGGT 57.152 38.095 15.66 0.00 37.20 4.69
2932 5790 4.385447 ACAAATTTCGAAAATGTGCATCGG 59.615 37.500 23.75 6.64 37.20 4.18
2933 5791 5.116831 TCACAAATTTCGAAAATGTGCATCG 59.883 36.000 33.43 21.17 38.55 3.84
2934 5792 6.450845 TCACAAATTTCGAAAATGTGCATC 57.549 33.333 33.43 0.00 38.55 3.91
2935 5793 6.479660 AGTTCACAAATTTCGAAAATGTGCAT 59.520 30.769 33.43 24.73 38.55 3.96
2936 5794 5.809562 AGTTCACAAATTTCGAAAATGTGCA 59.190 32.000 33.43 27.27 38.55 4.57
2937 5795 6.272698 AGTTCACAAATTTCGAAAATGTGC 57.727 33.333 33.43 26.08 38.55 4.57
2938 5796 9.540431 AAAAAGTTCACAAATTTCGAAAATGTG 57.460 25.926 32.94 32.94 39.31 3.21
3002 5860 9.267084 GCCATCCTAACTTTTTAACATTCAAAA 57.733 29.630 0.00 0.00 0.00 2.44
3003 5861 8.424918 TGCCATCCTAACTTTTTAACATTCAAA 58.575 29.630 0.00 0.00 0.00 2.69
3004 5862 7.957002 TGCCATCCTAACTTTTTAACATTCAA 58.043 30.769 0.00 0.00 0.00 2.69
3005 5863 7.531857 TGCCATCCTAACTTTTTAACATTCA 57.468 32.000 0.00 0.00 0.00 2.57
3006 5864 9.435688 AAATGCCATCCTAACTTTTTAACATTC 57.564 29.630 0.00 0.00 0.00 2.67
3007 5865 9.791801 AAAATGCCATCCTAACTTTTTAACATT 57.208 25.926 0.00 0.00 0.00 2.71
3008 5866 9.791801 AAAAATGCCATCCTAACTTTTTAACAT 57.208 25.926 0.00 0.00 0.00 2.71
3048 5906 9.737844 ACCATGCCAATAAAAATAAAAATGTCT 57.262 25.926 0.00 0.00 0.00 3.41
3060 5918 9.660180 GGAATAAAAAGTACCATGCCAATAAAA 57.340 29.630 0.00 0.00 0.00 1.52
3061 5919 7.976734 CGGAATAAAAAGTACCATGCCAATAAA 59.023 33.333 0.00 0.00 0.00 1.40
3062 5920 7.339721 TCGGAATAAAAAGTACCATGCCAATAA 59.660 33.333 0.00 0.00 0.00 1.40
3063 5921 6.829298 TCGGAATAAAAAGTACCATGCCAATA 59.171 34.615 0.00 0.00 0.00 1.90
3064 5922 5.654650 TCGGAATAAAAAGTACCATGCCAAT 59.345 36.000 0.00 0.00 0.00 3.16
3065 5923 5.010933 TCGGAATAAAAAGTACCATGCCAA 58.989 37.500 0.00 0.00 0.00 4.52
3066 5924 4.590918 TCGGAATAAAAAGTACCATGCCA 58.409 39.130 0.00 0.00 0.00 4.92
3067 5925 4.638865 ACTCGGAATAAAAAGTACCATGCC 59.361 41.667 0.00 0.00 0.00 4.40
3068 5926 5.569413 CACTCGGAATAAAAAGTACCATGC 58.431 41.667 0.00 0.00 0.00 4.06
3069 5927 5.123186 TGCACTCGGAATAAAAAGTACCATG 59.877 40.000 0.00 0.00 0.00 3.66
3070 5928 5.250200 TGCACTCGGAATAAAAAGTACCAT 58.750 37.500 0.00 0.00 0.00 3.55
3071 5929 4.643463 TGCACTCGGAATAAAAAGTACCA 58.357 39.130 0.00 0.00 0.00 3.25
3072 5930 5.448632 CCATGCACTCGGAATAAAAAGTACC 60.449 44.000 0.00 0.00 0.00 3.34
3073 5931 5.569413 CCATGCACTCGGAATAAAAAGTAC 58.431 41.667 0.00 0.00 0.00 2.73
3074 5932 4.095782 GCCATGCACTCGGAATAAAAAGTA 59.904 41.667 2.87 0.00 0.00 2.24
3075 5933 3.119495 GCCATGCACTCGGAATAAAAAGT 60.119 43.478 2.87 0.00 0.00 2.66
3076 5934 3.119531 TGCCATGCACTCGGAATAAAAAG 60.120 43.478 2.87 0.00 31.71 2.27
3077 5935 2.822561 TGCCATGCACTCGGAATAAAAA 59.177 40.909 2.87 0.00 31.71 1.94
3078 5936 2.441410 TGCCATGCACTCGGAATAAAA 58.559 42.857 2.87 0.00 31.71 1.52
3079 5937 2.121291 TGCCATGCACTCGGAATAAA 57.879 45.000 2.87 0.00 31.71 1.40
3080 5938 2.346766 ATGCCATGCACTCGGAATAA 57.653 45.000 2.87 0.00 43.04 1.40
3081 5939 2.346766 AATGCCATGCACTCGGAATA 57.653 45.000 2.87 0.00 43.04 1.75
3082 5940 1.477553 AAATGCCATGCACTCGGAAT 58.522 45.000 2.87 0.00 43.04 3.01
3083 5941 1.255882 AAAATGCCATGCACTCGGAA 58.744 45.000 2.87 0.00 43.04 4.30
3084 5942 1.255882 AAAAATGCCATGCACTCGGA 58.744 45.000 2.87 0.00 43.04 4.55
3085 5943 2.937469 TAAAAATGCCATGCACTCGG 57.063 45.000 0.00 0.00 43.04 4.63
3086 5944 6.884096 TTAAATAAAAATGCCATGCACTCG 57.116 33.333 0.00 0.00 43.04 4.18
3138 5996 9.253832 TCTCTCAAAAATTAAAATGCCATCCTA 57.746 29.630 0.00 0.00 0.00 2.94
3139 5997 8.137745 TCTCTCAAAAATTAAAATGCCATCCT 57.862 30.769 0.00 0.00 0.00 3.24
3140 5998 8.776376 TTCTCTCAAAAATTAAAATGCCATCC 57.224 30.769 0.00 0.00 0.00 3.51
3142 6000 9.169592 CCATTCTCTCAAAAATTAAAATGCCAT 57.830 29.630 0.00 0.00 0.00 4.40
3143 6001 8.373981 TCCATTCTCTCAAAAATTAAAATGCCA 58.626 29.630 0.00 0.00 0.00 4.92
3144 6002 8.776376 TCCATTCTCTCAAAAATTAAAATGCC 57.224 30.769 0.00 0.00 0.00 4.40
3181 6039 8.938906 GCCATTAAAAATATGCCATCCTATTTG 58.061 33.333 0.00 0.00 30.13 2.32
3182 6040 8.658619 TGCCATTAAAAATATGCCATCCTATTT 58.341 29.630 0.00 0.00 0.00 1.40
3183 6041 8.204903 TGCCATTAAAAATATGCCATCCTATT 57.795 30.769 0.00 0.00 0.00 1.73
3184 6042 7.795534 TGCCATTAAAAATATGCCATCCTAT 57.204 32.000 0.00 0.00 0.00 2.57
3185 6043 7.454066 TCATGCCATTAAAAATATGCCATCCTA 59.546 33.333 0.00 0.00 0.00 2.94
3186 6044 6.270463 TCATGCCATTAAAAATATGCCATCCT 59.730 34.615 0.00 0.00 0.00 3.24
3187 6045 6.369615 GTCATGCCATTAAAAATATGCCATCC 59.630 38.462 0.00 0.00 0.00 3.51
3188 6046 6.930164 TGTCATGCCATTAAAAATATGCCATC 59.070 34.615 0.00 0.00 0.00 3.51
3189 6047 6.828788 TGTCATGCCATTAAAAATATGCCAT 58.171 32.000 0.00 0.00 0.00 4.40
3190 6048 6.127111 ACTGTCATGCCATTAAAAATATGCCA 60.127 34.615 0.00 0.00 0.00 4.92
3191 6049 6.282930 ACTGTCATGCCATTAAAAATATGCC 58.717 36.000 0.00 0.00 0.00 4.40
3192 6050 7.775397 AACTGTCATGCCATTAAAAATATGC 57.225 32.000 0.00 0.00 0.00 3.14
3193 6051 9.153721 ACAAACTGTCATGCCATTAAAAATATG 57.846 29.630 0.00 0.00 0.00 1.78
3194 6052 9.723601 AACAAACTGTCATGCCATTAAAAATAT 57.276 25.926 0.00 0.00 0.00 1.28
3195 6053 9.553064 AAACAAACTGTCATGCCATTAAAAATA 57.447 25.926 0.00 0.00 0.00 1.40
3196 6054 8.449251 AAACAAACTGTCATGCCATTAAAAAT 57.551 26.923 0.00 0.00 0.00 1.82
3197 6055 7.856145 AAACAAACTGTCATGCCATTAAAAA 57.144 28.000 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.