Multiple sequence alignment - TraesCS7A01G076400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G076400 chr7A 100.000 4454 0 0 772 5225 41793443 41797896 0.000000e+00 8226.0
1 TraesCS7A01G076400 chr7A 100.000 494 0 0 1 494 41792672 41793165 0.000000e+00 913.0
2 TraesCS7A01G076400 chr4A 88.407 3459 283 65 1729 5119 649203352 649206760 0.000000e+00 4058.0
3 TraesCS7A01G076400 chr4A 91.269 859 58 13 870 1721 649202466 649203314 0.000000e+00 1155.0
4 TraesCS7A01G076400 chr4A 91.968 498 29 2 1 491 649197449 649197942 0.000000e+00 688.0
5 TraesCS7A01G076400 chr4A 82.825 361 48 9 2340 2696 649204358 649204708 1.410000e-80 311.0
6 TraesCS7A01G076400 chr4A 94.828 58 3 0 773 830 649197988 649198045 2.000000e-14 91.6
7 TraesCS7A01G076400 chr7D 89.842 1644 126 23 2764 4387 42497525 42499147 0.000000e+00 2073.0
8 TraesCS7A01G076400 chr7D 92.961 895 38 17 870 1758 42495491 42496366 0.000000e+00 1280.0
9 TraesCS7A01G076400 chr7D 93.664 726 40 6 1746 2469 42496801 42497522 0.000000e+00 1081.0
10 TraesCS7A01G076400 chr7D 90.014 711 35 15 4430 5113 42499145 42499846 0.000000e+00 887.0
11 TraesCS7A01G076400 chr7D 95.399 326 15 0 1 326 42436997 42437322 2.160000e-143 520.0
12 TraesCS7A01G076400 chr7D 81.481 351 53 7 2374 2720 42497525 42497867 1.430000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G076400 chr7A 41792672 41797896 5224 False 4569.500000 8226 100.000000 1 5225 2 chr7A.!!$F1 5224
1 TraesCS7A01G076400 chr4A 649202466 649206760 4294 False 1841.333333 4058 87.500333 870 5119 3 chr4A.!!$F2 4249
2 TraesCS7A01G076400 chr4A 649197449 649198045 596 False 389.800000 688 93.398000 1 830 2 chr4A.!!$F1 829
3 TraesCS7A01G076400 chr7D 42495491 42499846 4355 False 1119.800000 2073 89.592400 870 5113 5 chr7D.!!$F2 4243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 868 0.035056 ATTTCTGGGAAGGCGTGGAG 60.035 55.0 0.0 0.0 0.00 3.86 F
1293 1305 0.249868 TCGTTGTTCTGGTGGCTGAG 60.250 55.0 0.0 0.0 0.00 3.35 F
2506 3005 0.392336 TTGTGGGACAAAGCCAATGC 59.608 50.0 0.0 0.0 44.16 3.56 F
3657 4175 0.654683 CTGCTGAAGTGCCTTATCGC 59.345 55.0 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2698 3206 0.821517 ATCAACGGTACTCGGCATCA 59.178 50.0 8.31 0.0 44.45 3.07 R
3199 3711 0.949105 TTTCTTGGCCGAGACGCTTC 60.949 55.0 23.18 0.0 0.00 3.86 R
3806 4324 0.107800 CAGCAGGTGATGAGGGACAG 60.108 60.0 0.00 0.0 32.25 3.51 R
5156 5744 0.103026 TGATTGATCGCCGAGACTGG 59.897 55.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.100252 CAGCCAAATGTATGCTCCCTTG 59.900 50.000 0.00 0.00 31.77 3.61
66 67 2.564062 CCTTGCCTCATGAATTGGTTGT 59.436 45.455 0.00 0.00 0.00 3.32
67 68 3.007182 CCTTGCCTCATGAATTGGTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
68 69 4.503643 CCTTGCCTCATGAATTGGTTGTTT 60.504 41.667 0.00 0.00 0.00 2.83
69 70 3.992643 TGCCTCATGAATTGGTTGTTTG 58.007 40.909 0.00 0.00 0.00 2.93
111 112 4.685807 AGGCTATGGTAGGGATAGGTAAC 58.314 47.826 0.00 0.00 0.00 2.50
112 113 4.109106 AGGCTATGGTAGGGATAGGTAACA 59.891 45.833 0.00 0.00 41.41 2.41
113 114 4.842380 GGCTATGGTAGGGATAGGTAACAA 59.158 45.833 0.00 0.00 41.41 2.83
125 126 6.604795 GGGATAGGTAACAACACTAGACAGTA 59.395 42.308 0.00 0.00 41.41 2.74
150 151 5.440610 CCAACTTCATATAGCATATCCCCC 58.559 45.833 0.00 0.00 0.00 5.40
151 152 5.044919 CCAACTTCATATAGCATATCCCCCA 60.045 44.000 0.00 0.00 0.00 4.96
178 179 0.908910 TCAATACACTGACGGGGCAT 59.091 50.000 0.00 0.00 0.00 4.40
187 188 1.396996 CTGACGGGGCATAGAAAAACG 59.603 52.381 0.00 0.00 0.00 3.60
199 200 6.311200 GGCATAGAAAAACGCAATTTCAGATT 59.689 34.615 9.81 0.00 38.86 2.40
224 225 1.808945 CGGAAGCTCACTTGAAGCAAT 59.191 47.619 0.00 0.00 35.82 3.56
317 318 2.890808 TGTCACTATTCGCCATCTCC 57.109 50.000 0.00 0.00 0.00 3.71
330 331 1.912043 CCATCTCCACCTTCCTTCAGT 59.088 52.381 0.00 0.00 0.00 3.41
336 337 4.712337 TCTCCACCTTCCTTCAGTCTTATC 59.288 45.833 0.00 0.00 0.00 1.75
366 367 0.617413 AGGCCACCTCTCATGACAAG 59.383 55.000 5.01 0.00 0.00 3.16
413 414 1.367840 GGTATAGTGAGGCAGGCGG 59.632 63.158 0.00 0.00 0.00 6.13
421 422 2.361610 AGGCAGGCGGGTCAAATG 60.362 61.111 0.00 0.00 0.00 2.32
465 473 6.042093 TGGTTTGGCCAATTGATAACAGTAAA 59.958 34.615 21.26 0.00 45.94 2.01
477 485 8.437360 TTGATAACAGTAAATGCTCGAATCAT 57.563 30.769 0.00 0.00 0.00 2.45
482 490 8.613060 AACAGTAAATGCTCGAATCATCATAT 57.387 30.769 0.95 0.00 0.00 1.78
485 493 9.964253 CAGTAAATGCTCGAATCATCATATTAC 57.036 33.333 0.95 6.12 0.00 1.89
491 499 8.707938 TGCTCGAATCATCATATTACCTTATG 57.292 34.615 0.00 0.00 0.00 1.90
816 824 4.526650 TGTCCTTAGAGCAACTATGACACA 59.473 41.667 13.95 9.65 37.82 3.72
822 830 3.999663 AGAGCAACTATGACACAAGCTTC 59.000 43.478 0.00 0.00 0.00 3.86
830 838 6.402222 ACTATGACACAAGCTTCTCCTTAAG 58.598 40.000 0.00 0.00 0.00 1.85
831 839 4.008074 TGACACAAGCTTCTCCTTAAGG 57.992 45.455 15.98 15.98 0.00 2.69
832 840 3.646162 TGACACAAGCTTCTCCTTAAGGA 59.354 43.478 22.94 22.94 43.08 3.36
833 841 4.102524 TGACACAAGCTTCTCCTTAAGGAA 59.897 41.667 24.31 10.48 44.91 3.36
834 842 5.221925 TGACACAAGCTTCTCCTTAAGGAAT 60.222 40.000 24.31 6.38 44.91 3.01
835 843 5.635120 ACACAAGCTTCTCCTTAAGGAATT 58.365 37.500 24.31 11.55 44.91 2.17
836 844 5.707764 ACACAAGCTTCTCCTTAAGGAATTC 59.292 40.000 24.31 13.53 44.91 2.17
837 845 5.707298 CACAAGCTTCTCCTTAAGGAATTCA 59.293 40.000 24.31 6.82 44.91 2.57
838 846 6.207417 CACAAGCTTCTCCTTAAGGAATTCAA 59.793 38.462 24.31 13.40 44.91 2.69
839 847 6.950619 ACAAGCTTCTCCTTAAGGAATTCAAT 59.049 34.615 24.31 7.97 44.91 2.57
840 848 7.452813 ACAAGCTTCTCCTTAAGGAATTCAATT 59.547 33.333 24.31 12.36 44.91 2.32
841 849 8.960591 CAAGCTTCTCCTTAAGGAATTCAATTA 58.039 33.333 24.31 3.18 44.91 1.40
842 850 9.706529 AAGCTTCTCCTTAAGGAATTCAATTAT 57.293 29.630 24.31 3.98 44.91 1.28
843 851 9.706529 AGCTTCTCCTTAAGGAATTCAATTATT 57.293 29.630 24.31 1.49 44.91 1.40
849 857 9.200817 TCCTTAAGGAATTCAATTATTTCTGGG 57.799 33.333 22.27 0.00 42.18 4.45
850 858 9.200817 CCTTAAGGAATTCAATTATTTCTGGGA 57.799 33.333 17.21 0.00 37.39 4.37
853 861 7.666063 AGGAATTCAATTATTTCTGGGAAGG 57.334 36.000 7.93 0.00 0.00 3.46
854 862 6.098838 AGGAATTCAATTATTTCTGGGAAGGC 59.901 38.462 7.93 0.00 0.00 4.35
855 863 4.981806 TTCAATTATTTCTGGGAAGGCG 57.018 40.909 0.00 0.00 0.00 5.52
856 864 3.963129 TCAATTATTTCTGGGAAGGCGT 58.037 40.909 0.00 0.00 0.00 5.68
857 865 3.694072 TCAATTATTTCTGGGAAGGCGTG 59.306 43.478 0.00 0.00 0.00 5.34
858 866 2.122783 TTATTTCTGGGAAGGCGTGG 57.877 50.000 0.00 0.00 0.00 4.94
859 867 1.281419 TATTTCTGGGAAGGCGTGGA 58.719 50.000 0.00 0.00 0.00 4.02
860 868 0.035056 ATTTCTGGGAAGGCGTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
861 869 1.125093 TTTCTGGGAAGGCGTGGAGA 61.125 55.000 0.00 0.00 0.00 3.71
862 870 0.909610 TTCTGGGAAGGCGTGGAGAT 60.910 55.000 0.00 0.00 0.00 2.75
863 871 1.153289 CTGGGAAGGCGTGGAGATG 60.153 63.158 0.00 0.00 0.00 2.90
864 872 2.514824 GGGAAGGCGTGGAGATGC 60.515 66.667 0.00 0.00 0.00 3.91
865 873 2.586792 GGAAGGCGTGGAGATGCT 59.413 61.111 0.00 0.00 34.20 3.79
866 874 1.817099 GGAAGGCGTGGAGATGCTG 60.817 63.158 0.00 0.00 34.20 4.41
867 875 1.078848 GAAGGCGTGGAGATGCTGT 60.079 57.895 0.00 0.00 34.20 4.40
868 876 1.078848 AAGGCGTGGAGATGCTGTC 60.079 57.895 0.00 0.00 34.20 3.51
897 908 5.163713 GCCAGGAGATGTAAAAGATGTGTTC 60.164 44.000 0.00 0.00 0.00 3.18
921 932 1.741770 GGAGGCGCACGAATCTTGT 60.742 57.895 10.83 0.00 0.00 3.16
930 941 1.061131 CACGAATCTTGTCGCACATCC 59.939 52.381 0.00 0.00 45.00 3.51
1083 1095 1.379309 GCCGTCCTCTCTCAGGTCT 60.379 63.158 0.00 0.00 43.95 3.85
1125 1137 2.046892 CACGCCCCACTCCTGAAG 60.047 66.667 0.00 0.00 0.00 3.02
1148 1160 2.597903 GCTGACCCTCCCCAATCC 59.402 66.667 0.00 0.00 0.00 3.01
1283 1295 1.129058 ACTCTGGGGTTCGTTGTTCT 58.871 50.000 0.00 0.00 0.00 3.01
1293 1305 0.249868 TCGTTGTTCTGGTGGCTGAG 60.250 55.000 0.00 0.00 0.00 3.35
1448 1460 1.597937 GCCTCTGTTTTGCTCGTTGTG 60.598 52.381 0.00 0.00 0.00 3.33
1455 1467 5.065346 TCTGTTTTGCTCGTTGTGTTGATAA 59.935 36.000 0.00 0.00 0.00 1.75
1456 1468 5.826586 TGTTTTGCTCGTTGTGTTGATAAT 58.173 33.333 0.00 0.00 0.00 1.28
1459 1471 7.536964 TGTTTTGCTCGTTGTGTTGATAATATG 59.463 33.333 0.00 0.00 0.00 1.78
1477 1492 1.283793 GTGTGTGGTGCTGCACATC 59.716 57.895 31.35 22.81 45.65 3.06
1506 1521 3.636764 GTGTTTGTTCAGTCCCCATTTCT 59.363 43.478 0.00 0.00 0.00 2.52
1513 1528 0.405585 AGTCCCCATTTCTGGTGGTG 59.594 55.000 0.00 0.00 41.37 4.17
1591 1606 8.649973 ACTAATAGACGGATGATTTTGAGTTC 57.350 34.615 0.00 0.00 0.00 3.01
1597 1612 4.637534 ACGGATGATTTTGAGTTCTGATGG 59.362 41.667 0.00 0.00 0.00 3.51
1607 1622 1.144969 GTTCTGATGGTTGCGTCGAA 58.855 50.000 0.00 0.00 0.00 3.71
1614 1629 2.750888 GGTTGCGTCGAATGGCTCC 61.751 63.158 0.00 5.18 0.00 4.70
1660 1679 4.665212 CTTTTCGATGGATGTGGAATGTG 58.335 43.478 0.00 0.00 0.00 3.21
1773 2270 5.067413 TCTGTTATTGTTCTAGCTAGGTCCG 59.933 44.000 20.58 0.00 0.00 4.79
1814 2311 7.517320 TCATGGTAGCCAATTGTATCAGTAAT 58.483 34.615 4.43 0.00 36.95 1.89
1848 2345 1.691434 TGCTGGAAACATTTGTTCCCC 59.309 47.619 0.00 2.79 41.51 4.81
1850 2347 2.368548 GCTGGAAACATTTGTTCCCCTT 59.631 45.455 12.84 0.00 41.51 3.95
1852 2349 4.039852 GCTGGAAACATTTGTTCCCCTTAA 59.960 41.667 12.84 0.00 41.51 1.85
1858 2355 8.704668 GGAAACATTTGTTCCCCTTAATATCAT 58.295 33.333 0.00 0.00 37.25 2.45
1859 2356 9.533253 GAAACATTTGTTCCCCTTAATATCATG 57.467 33.333 0.00 0.00 37.25 3.07
2051 2549 2.552599 TGACTAATTCCGTTGCACCA 57.447 45.000 0.00 0.00 0.00 4.17
2053 2551 2.224426 TGACTAATTCCGTTGCACCAGT 60.224 45.455 0.00 0.00 0.00 4.00
2088 2586 7.860872 TGTATTTGCTGTATACAGTATCGTGAG 59.139 37.037 28.95 6.67 45.45 3.51
2230 2728 4.099266 CAGGAGGAGATGTAAGAACTCAGG 59.901 50.000 0.00 0.00 33.00 3.86
2348 2847 1.539827 GAAACCAAGTTGATGTCCCCG 59.460 52.381 3.87 0.00 0.00 5.73
2383 2882 7.096551 TCTTGAAAAAGAAAAACTGGGTTGAG 58.903 34.615 0.00 0.00 0.00 3.02
2389 2888 4.218312 AGAAAAACTGGGTTGAGCTGATT 58.782 39.130 0.00 0.00 0.00 2.57
2441 2940 8.304596 TCTGTAGTTTAGTAAGTGAGTGATTGG 58.695 37.037 0.00 0.00 0.00 3.16
2450 2949 3.144506 AGTGAGTGATTGGCTGAACTTG 58.855 45.455 0.00 0.00 0.00 3.16
2469 2968 4.993584 ACTTGAGTATCTTGTGCTGAGTTG 59.006 41.667 0.00 0.00 34.92 3.16
2471 2970 5.722021 TGAGTATCTTGTGCTGAGTTGTA 57.278 39.130 0.00 0.00 34.92 2.41
2486 2985 6.392625 TGAGTTGTATATGCTGTCCTACTC 57.607 41.667 0.00 0.00 0.00 2.59
2500 2999 2.038557 TCCTACTCTTGTGGGACAAAGC 59.961 50.000 0.00 0.00 46.79 3.51
2503 3002 1.064017 ACTCTTGTGGGACAAAGCCAA 60.064 47.619 0.00 0.00 44.16 4.52
2504 3003 2.242043 CTCTTGTGGGACAAAGCCAAT 58.758 47.619 0.00 0.00 44.16 3.16
2505 3004 1.962807 TCTTGTGGGACAAAGCCAATG 59.037 47.619 0.00 0.00 44.16 2.82
2506 3005 0.392336 TTGTGGGACAAAGCCAATGC 59.608 50.000 0.00 0.00 44.16 3.56
2514 3022 3.002553 GGACAAAGCCAATGCAAAACTTG 59.997 43.478 0.00 0.00 41.13 3.16
2635 3143 6.441093 TTCCAATTGTAGCAGCTCTAATTG 57.559 37.500 24.36 24.36 30.58 2.32
2645 3153 4.829492 AGCAGCTCTAATTGTTTGGAAAGT 59.171 37.500 0.00 0.00 0.00 2.66
2656 3164 5.066968 TGTTTGGAAAGTTCACTGGAAAC 57.933 39.130 0.00 0.00 34.13 2.78
2664 3172 5.819825 AAGTTCACTGGAAACTGAAGTTC 57.180 39.130 0.00 0.00 34.74 3.01
2665 3173 4.843728 AGTTCACTGGAAACTGAAGTTCA 58.156 39.130 5.25 5.25 37.25 3.18
2669 3177 6.174720 TCACTGGAAACTGAAGTTCACTAT 57.825 37.500 0.08 0.00 37.25 2.12
2689 3197 2.751436 ATCGGTGTGGGCATGCAC 60.751 61.111 21.36 18.25 35.07 4.57
2698 3206 2.570752 TGTGGGCATGCACCATTTTAAT 59.429 40.909 24.76 0.00 40.70 1.40
2699 3207 2.937799 GTGGGCATGCACCATTTTAATG 59.062 45.455 24.76 0.00 40.70 1.90
2711 3219 4.578928 ACCATTTTAATGATGCCGAGTACC 59.421 41.667 4.07 0.00 38.70 3.34
2712 3220 4.319477 CCATTTTAATGATGCCGAGTACCG 60.319 45.833 4.07 0.00 38.70 4.02
2719 3227 2.427812 TGATGCCGAGTACCGTTGATAA 59.572 45.455 0.00 0.00 36.31 1.75
2720 3228 2.282701 TGCCGAGTACCGTTGATAAC 57.717 50.000 0.00 0.00 36.31 1.89
2721 3229 1.545136 TGCCGAGTACCGTTGATAACA 59.455 47.619 0.00 0.00 36.31 2.41
2729 3237 7.063780 CCGAGTACCGTTGATAACATAAAACTT 59.936 37.037 0.00 0.00 36.31 2.66
2739 3247 6.605594 TGATAACATAAAACTTGGATGTCCCC 59.394 38.462 0.00 0.00 32.67 4.81
2752 3260 5.940617 TGGATGTCCCCATAGTTTATCTTG 58.059 41.667 0.00 0.00 34.29 3.02
2756 3264 7.559897 GGATGTCCCCATAGTTTATCTTGAAAA 59.440 37.037 0.00 0.00 0.00 2.29
2782 3290 3.618690 AACTAGGATGAACTGAGTGGC 57.381 47.619 0.00 0.00 0.00 5.01
2813 3323 3.311048 GCTGCCAATGCTACTCTAGTTTC 59.689 47.826 0.00 0.00 38.71 2.78
2823 3333 4.820716 GCTACTCTAGTTTCGTGAGGGATA 59.179 45.833 0.00 0.00 32.58 2.59
2879 3389 3.300388 TGCTGTCCTACTCTTATGGGAG 58.700 50.000 0.00 0.00 39.09 4.30
2897 3408 7.775053 ATGGGAGAAACTATTGCAAAAACTA 57.225 32.000 1.71 0.00 0.00 2.24
2913 3424 9.502091 TGCAAAAACTAGTATCACTATGAAACT 57.498 29.630 0.00 0.00 29.08 2.66
2929 3440 6.829229 ATGAAACTGAAATGCTCATTCTGA 57.171 33.333 9.35 0.00 32.14 3.27
2933 3444 8.145767 TGAAACTGAAATGCTCATTCTGAAAAT 58.854 29.630 0.00 0.00 32.14 1.82
2982 3494 7.048629 TGGAGACAAAATTAAGCAATGTCAA 57.951 32.000 12.90 0.83 42.12 3.18
3033 3545 6.121776 TCTAATTGGTTGGAAAGCTCACTA 57.878 37.500 0.00 0.00 46.34 2.74
3078 3590 1.264295 TGCCAGCATGCACCATTTTA 58.736 45.000 21.98 0.00 36.04 1.52
3081 3593 2.610374 GCCAGCATGCACCATTTTATTG 59.390 45.455 21.98 4.82 31.97 1.90
3082 3594 3.679361 GCCAGCATGCACCATTTTATTGA 60.679 43.478 21.98 0.00 31.97 2.57
3083 3595 3.866910 CCAGCATGCACCATTTTATTGAC 59.133 43.478 21.98 0.00 31.97 3.18
3084 3596 4.382254 CCAGCATGCACCATTTTATTGACT 60.382 41.667 21.98 0.00 31.97 3.41
3085 3597 5.163530 CCAGCATGCACCATTTTATTGACTA 60.164 40.000 21.98 0.00 31.97 2.59
3087 3599 4.741676 GCATGCACCATTTTATTGACTAGC 59.258 41.667 14.21 0.00 0.00 3.42
3111 3623 5.221106 CGAGTCCCATTGATAAATGCAACAT 60.221 40.000 0.00 0.00 0.00 2.71
3117 3629 6.869913 CCCATTGATAAATGCAACATGGATAC 59.130 38.462 0.00 0.00 0.00 2.24
3145 3657 7.458397 TGTAATCCATCTTTCAGTGTACCTTT 58.542 34.615 0.00 0.00 0.00 3.11
3157 3669 4.037923 CAGTGTACCTTTTGGCTTGTGAAT 59.962 41.667 0.00 0.00 45.59 2.57
3178 3690 9.988350 GTGAATATATGTTTGTTTCGATGTTCT 57.012 29.630 0.00 0.00 0.00 3.01
3179 3691 9.986833 TGAATATATGTTTGTTTCGATGTTCTG 57.013 29.630 0.00 0.00 0.00 3.02
3199 3711 4.160439 TCTGAAATGGGTACAGAGCTACAG 59.840 45.833 0.00 0.00 36.04 2.74
3210 3722 4.386245 GCTACAGAAGCGTCTCGG 57.614 61.111 0.00 0.00 42.53 4.63
3226 3738 3.866327 GTCTCGGCCAAGAAATACTCTTC 59.134 47.826 2.24 0.00 42.84 2.87
3237 3749 5.420409 AGAAATACTCTTCGCTAACCCAAG 58.580 41.667 0.00 0.00 0.00 3.61
3257 3769 2.087646 GTTTGCCTAGGAGAGCCTTTG 58.912 52.381 14.75 0.00 43.90 2.77
3261 3773 2.910319 TGCCTAGGAGAGCCTTTGTAAA 59.090 45.455 14.75 0.00 43.90 2.01
3264 3776 4.336713 GCCTAGGAGAGCCTTTGTAAATTG 59.663 45.833 14.75 0.00 43.90 2.32
3271 3783 5.591099 AGAGCCTTTGTAAATTGTGTGTTG 58.409 37.500 0.00 0.00 0.00 3.33
3354 3866 4.018960 AGAGTCCAATTGGTACTCATTGCT 60.019 41.667 34.15 22.24 41.05 3.91
3410 3922 4.027674 TGCAGCTGGTCAAAAGGTATTA 57.972 40.909 17.12 0.00 0.00 0.98
3433 3945 9.740710 ATTAGCACTTAAATACCAACTTCTTCT 57.259 29.630 0.00 0.00 0.00 2.85
3436 3948 7.719633 AGCACTTAAATACCAACTTCTTCTTGA 59.280 33.333 0.00 0.00 0.00 3.02
3469 3984 4.475051 TTTCTGCCCACTATAACGCTTA 57.525 40.909 0.00 0.00 0.00 3.09
3472 3987 4.628074 TCTGCCCACTATAACGCTTATTC 58.372 43.478 0.00 0.00 0.00 1.75
3474 3989 5.537295 TCTGCCCACTATAACGCTTATTCTA 59.463 40.000 0.00 0.00 0.00 2.10
3480 3995 7.309012 CCCACTATAACGCTTATTCTACTGCTA 60.309 40.741 0.00 0.00 0.00 3.49
3501 4019 6.982141 TGCTATTTTACACTATGTAGGGTTCG 59.018 38.462 0.00 0.00 41.02 3.95
3613 4131 7.145323 CCGATCAGTTTGTTGTTAAAAATCCT 58.855 34.615 0.00 0.00 0.00 3.24
3627 4145 7.171337 TGTTAAAAATCCTTACGGTGTACAGTC 59.829 37.037 0.00 0.00 0.00 3.51
3638 4156 4.508861 ACGGTGTACAGTCATTGTTGTTAC 59.491 41.667 0.00 3.71 41.29 2.50
3657 4175 0.654683 CTGCTGAAGTGCCTTATCGC 59.345 55.000 0.00 0.00 0.00 4.58
3665 4183 3.153024 TGCCTTATCGCACACTTCC 57.847 52.632 0.00 0.00 32.62 3.46
3666 4184 0.739462 TGCCTTATCGCACACTTCCG 60.739 55.000 0.00 0.00 32.62 4.30
3758 4276 2.973899 CTAGCAGAGCACACGGGT 59.026 61.111 0.00 0.00 0.00 5.28
3797 4315 4.149396 GTCAGCATTTTCTGTTGCATGTTC 59.851 41.667 0.00 0.00 41.35 3.18
3799 4317 3.322828 AGCATTTTCTGTTGCATGTTCCT 59.677 39.130 0.00 0.00 41.35 3.36
3801 4319 2.798976 TTTCTGTTGCATGTTCCTGC 57.201 45.000 0.00 0.00 42.62 4.85
3806 4324 0.242017 GTTGCATGTTCCTGCCACTC 59.758 55.000 0.00 0.00 41.58 3.51
3808 4326 0.607217 TGCATGTTCCTGCCACTCTG 60.607 55.000 0.00 0.00 41.58 3.35
3824 4342 0.252421 TCTGTCCCTCATCACCTGCT 60.252 55.000 0.00 0.00 0.00 4.24
3829 4348 1.555075 TCCCTCATCACCTGCTGTTAC 59.445 52.381 0.00 0.00 0.00 2.50
3831 4350 2.625737 CCTCATCACCTGCTGTTACAG 58.374 52.381 8.18 8.18 37.42 2.74
3835 4354 4.566004 TCATCACCTGCTGTTACAGTTAC 58.434 43.478 14.23 0.00 35.83 2.50
3843 4362 5.284861 TGCTGTTACAGTTACCTTTCAGA 57.715 39.130 14.23 0.00 33.43 3.27
3858 4384 4.515567 CCTTTCAGAGAAACGCCTTTTAGT 59.484 41.667 0.00 0.00 0.00 2.24
3873 4400 5.334957 GCCTTTTAGTGTTCCTGCTTACTTC 60.335 44.000 0.00 0.00 0.00 3.01
3879 4406 3.995048 GTGTTCCTGCTTACTTCCACTAC 59.005 47.826 0.00 0.00 0.00 2.73
3880 4407 3.644265 TGTTCCTGCTTACTTCCACTACA 59.356 43.478 0.00 0.00 0.00 2.74
3882 4409 2.565834 TCCTGCTTACTTCCACTACACC 59.434 50.000 0.00 0.00 0.00 4.16
3885 4412 4.381718 CCTGCTTACTTCCACTACACCTAC 60.382 50.000 0.00 0.00 0.00 3.18
3886 4413 3.192001 TGCTTACTTCCACTACACCTACG 59.808 47.826 0.00 0.00 0.00 3.51
3887 4414 3.441572 GCTTACTTCCACTACACCTACGA 59.558 47.826 0.00 0.00 0.00 3.43
3890 4417 2.230750 ACTTCCACTACACCTACGAAGC 59.769 50.000 0.00 0.00 31.92 3.86
3905 4432 5.642063 CCTACGAAGCCTTTGATTTGTTCTA 59.358 40.000 0.00 0.00 36.03 2.10
3914 4441 7.285401 AGCCTTTGATTTGTTCTAGTTTTCTCA 59.715 33.333 0.00 0.00 0.00 3.27
3916 4443 9.617975 CCTTTGATTTGTTCTAGTTTTCTCATC 57.382 33.333 0.00 0.00 0.00 2.92
3977 4504 6.434340 CCATATTTCCACTTTCCCTATAAGCC 59.566 42.308 0.00 0.00 0.00 4.35
4051 4582 6.518032 GCTGCATTCCTCTCATCTCAAGTATA 60.518 42.308 0.00 0.00 0.00 1.47
4053 4584 7.971201 TGCATTCCTCTCATCTCAAGTATATT 58.029 34.615 0.00 0.00 0.00 1.28
4054 4585 8.435187 TGCATTCCTCTCATCTCAAGTATATTT 58.565 33.333 0.00 0.00 0.00 1.40
4055 4586 9.935241 GCATTCCTCTCATCTCAAGTATATTTA 57.065 33.333 0.00 0.00 0.00 1.40
4122 4653 2.498726 GCAGAAGGAGCCCTCGAG 59.501 66.667 5.13 5.13 30.89 4.04
4134 4665 1.329256 CCCTCGAGTACGGGATCATT 58.671 55.000 12.31 0.00 43.41 2.57
4239 4771 3.636764 TCGGCTAATCTTAGATGTCAGCA 59.363 43.478 18.79 4.05 32.47 4.41
4341 4882 4.037565 TCATGCGGATGTACGAGATTTAGT 59.962 41.667 16.96 0.00 35.47 2.24
4347 4888 6.466812 CGGATGTACGAGATTTAGTTTGTTG 58.533 40.000 0.00 0.00 35.47 3.33
4356 4897 5.374071 AGATTTAGTTTGTTGTCTCCGGTT 58.626 37.500 0.00 0.00 0.00 4.44
4373 4914 3.483421 CGGTTTCCCCAGACTTTTAAGT 58.517 45.455 0.00 0.00 43.16 2.24
4408 4949 0.617820 AAGAGGTGATAGGCGGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
4409 4950 1.144057 GAGGTGATAGGCGGTGGTG 59.856 63.158 0.00 0.00 0.00 4.17
4412 4953 1.045407 GGTGATAGGCGGTGGTGATA 58.955 55.000 0.00 0.00 0.00 2.15
4415 4956 3.326747 GTGATAGGCGGTGGTGATATTC 58.673 50.000 0.00 0.00 0.00 1.75
4416 4957 2.029380 TGATAGGCGGTGGTGATATTCG 60.029 50.000 0.00 0.00 0.00 3.34
4417 4958 1.405872 TAGGCGGTGGTGATATTCGT 58.594 50.000 0.00 0.00 0.00 3.85
4420 4961 0.526954 GCGGTGGTGATATTCGTCGT 60.527 55.000 0.00 0.00 0.00 4.34
4443 4984 1.960417 TTCATGCACACCGAGAAACA 58.040 45.000 0.00 0.00 0.00 2.83
4447 4988 1.885850 GCACACCGAGAAACACCGT 60.886 57.895 0.00 0.00 0.00 4.83
4451 4992 1.070786 ACCGAGAAACACCGTGCAT 59.929 52.632 0.00 0.00 0.00 3.96
4452 4993 0.319083 ACCGAGAAACACCGTGCATA 59.681 50.000 0.00 0.00 0.00 3.14
4453 4994 0.999406 CCGAGAAACACCGTGCATAG 59.001 55.000 0.00 0.00 0.00 2.23
4464 5005 4.458989 ACACCGTGCATAGTTGATGATTTT 59.541 37.500 0.00 0.00 37.82 1.82
4469 5010 2.791004 GCATAGTTGATGATTTTGCGCC 59.209 45.455 4.18 0.00 37.82 6.53
4482 5023 3.650070 TTTGCGCCACATTAATGTTCA 57.350 38.095 18.50 10.99 39.39 3.18
4518 5060 2.366590 TCCGCAAGATGCTGTCTGATAT 59.633 45.455 0.43 0.00 42.25 1.63
4520 5062 3.562973 CCGCAAGATGCTGTCTGATATTT 59.437 43.478 0.43 0.00 42.25 1.40
4521 5063 4.751600 CCGCAAGATGCTGTCTGATATTTA 59.248 41.667 0.43 0.00 42.25 1.40
4523 5065 6.401903 CCGCAAGATGCTGTCTGATATTTATC 60.402 42.308 0.43 0.00 42.25 1.75
4586 5140 6.314152 CCGTCTTTCTTTTCCTTATCTTCTCC 59.686 42.308 0.00 0.00 0.00 3.71
4600 5154 1.349026 CTTCTCCTCAGGAAGGTTGCA 59.651 52.381 0.00 0.00 46.32 4.08
4727 5281 7.598278 CAGATTATAGTAGTGGTAGAAGGCAG 58.402 42.308 0.00 0.00 0.00 4.85
4767 5324 2.986979 TGGTAGCGAGCGTGGACA 60.987 61.111 0.00 0.00 0.00 4.02
4810 5377 1.667154 TAGCTGTGGAATCGCTCGCT 61.667 55.000 0.00 0.00 35.33 4.93
4971 5552 1.813753 CAGGCCACCATACGGTTCG 60.814 63.158 5.01 0.00 46.31 3.95
4987 5568 2.780557 GGTTCGACGCGTAGAATAAGTC 59.219 50.000 32.08 20.55 0.00 3.01
5039 5627 4.712829 TGATTGGTAGGTGAAGATCGGTTA 59.287 41.667 0.00 0.00 0.00 2.85
5040 5628 4.730949 TTGGTAGGTGAAGATCGGTTAG 57.269 45.455 0.00 0.00 0.00 2.34
5041 5629 3.705051 TGGTAGGTGAAGATCGGTTAGT 58.295 45.455 0.00 0.00 0.00 2.24
5042 5630 4.091549 TGGTAGGTGAAGATCGGTTAGTT 58.908 43.478 0.00 0.00 0.00 2.24
5123 5711 3.880040 ATGATTGGCATGTCACGGA 57.120 47.368 0.00 0.00 35.42 4.69
5124 5712 2.127271 ATGATTGGCATGTCACGGAA 57.873 45.000 0.00 0.00 35.42 4.30
5125 5713 1.452110 TGATTGGCATGTCACGGAAG 58.548 50.000 0.00 0.00 0.00 3.46
5126 5714 0.734889 GATTGGCATGTCACGGAAGG 59.265 55.000 0.00 0.00 0.00 3.46
5127 5715 0.680921 ATTGGCATGTCACGGAAGGG 60.681 55.000 0.00 0.00 0.00 3.95
5128 5716 3.134127 GGCATGTCACGGAAGGGC 61.134 66.667 0.00 0.00 0.00 5.19
5129 5717 3.499737 GCATGTCACGGAAGGGCG 61.500 66.667 0.00 0.00 0.00 6.13
5130 5718 3.499737 CATGTCACGGAAGGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
5146 5734 3.723348 GCGGTGCGGGTGAGAAAC 61.723 66.667 0.00 0.00 0.00 2.78
5147 5735 2.280524 CGGTGCGGGTGAGAAACA 60.281 61.111 0.00 0.00 0.00 2.83
5155 5743 2.935955 GTGAGAAACACCGTGCCG 59.064 61.111 0.00 0.00 43.05 5.69
5156 5744 2.970324 TGAGAAACACCGTGCCGC 60.970 61.111 0.00 0.00 0.00 6.53
5157 5745 3.723348 GAGAAACACCGTGCCGCC 61.723 66.667 0.00 0.00 0.00 6.13
5158 5746 4.555709 AGAAACACCGTGCCGCCA 62.556 61.111 0.00 0.00 0.00 5.69
5159 5747 4.025401 GAAACACCGTGCCGCCAG 62.025 66.667 0.00 0.00 0.00 4.85
5160 5748 4.868116 AAACACCGTGCCGCCAGT 62.868 61.111 0.00 0.00 0.00 4.00
5172 5760 2.184322 GCCAGTCTCGGCGATCAA 59.816 61.111 11.27 0.00 43.52 2.57
5173 5761 1.227380 GCCAGTCTCGGCGATCAAT 60.227 57.895 11.27 0.00 43.52 2.57
5174 5762 1.218230 GCCAGTCTCGGCGATCAATC 61.218 60.000 11.27 0.00 43.52 2.67
5175 5763 0.103026 CCAGTCTCGGCGATCAATCA 59.897 55.000 11.27 0.00 0.00 2.57
5176 5764 1.269988 CCAGTCTCGGCGATCAATCAT 60.270 52.381 11.27 0.00 0.00 2.45
5177 5765 1.791204 CAGTCTCGGCGATCAATCATG 59.209 52.381 11.27 0.00 0.00 3.07
5178 5766 1.143305 GTCTCGGCGATCAATCATGG 58.857 55.000 11.27 0.00 0.00 3.66
5179 5767 1.039856 TCTCGGCGATCAATCATGGA 58.960 50.000 11.27 0.00 0.00 3.41
5180 5768 1.620323 TCTCGGCGATCAATCATGGAT 59.380 47.619 11.27 0.00 0.00 3.41
5181 5769 1.730612 CTCGGCGATCAATCATGGATG 59.269 52.381 11.27 0.00 0.00 3.51
5182 5770 0.800631 CGGCGATCAATCATGGATGG 59.199 55.000 0.00 0.00 0.00 3.51
5183 5771 1.608801 CGGCGATCAATCATGGATGGA 60.609 52.381 0.00 0.00 0.00 3.41
5184 5772 2.719739 GGCGATCAATCATGGATGGAT 58.280 47.619 0.00 0.00 35.61 3.41
5185 5773 2.681848 GGCGATCAATCATGGATGGATC 59.318 50.000 11.84 11.84 42.82 3.36
5189 5777 3.030668 TCAATCATGGATGGATCGACG 57.969 47.619 0.00 0.00 0.00 5.12
5190 5778 2.071540 CAATCATGGATGGATCGACGG 58.928 52.381 0.00 0.00 0.00 4.79
5191 5779 1.632589 ATCATGGATGGATCGACGGA 58.367 50.000 0.00 0.00 0.00 4.69
5192 5780 0.673985 TCATGGATGGATCGACGGAC 59.326 55.000 0.00 0.00 0.00 4.79
5193 5781 0.664466 CATGGATGGATCGACGGACG 60.664 60.000 0.00 0.00 44.09 4.79
5194 5782 1.107538 ATGGATGGATCGACGGACGT 61.108 55.000 0.00 0.00 43.13 4.34
5195 5783 1.299165 GGATGGATCGACGGACGTG 60.299 63.158 0.53 0.00 43.13 4.49
5196 5784 1.432251 GATGGATCGACGGACGTGT 59.568 57.895 0.53 0.00 43.13 4.49
5197 5785 0.591741 GATGGATCGACGGACGTGTC 60.592 60.000 0.53 0.00 43.13 3.67
5198 5786 1.030488 ATGGATCGACGGACGTGTCT 61.030 55.000 0.53 0.00 43.13 3.41
5199 5787 1.226323 GGATCGACGGACGTGTCTG 60.226 63.158 0.53 7.28 43.13 3.51
5204 5792 3.837578 ACGGACGTGTCTGTGACT 58.162 55.556 13.44 0.00 46.62 3.41
5205 5793 1.359117 ACGGACGTGTCTGTGACTG 59.641 57.895 13.44 0.00 46.62 3.51
5206 5794 2.016704 CGGACGTGTCTGTGACTGC 61.017 63.158 0.00 0.00 33.15 4.40
5207 5795 2.016704 GGACGTGTCTGTGACTGCG 61.017 63.158 0.00 11.23 37.53 5.18
5208 5796 1.008881 GACGTGTCTGTGACTGCGA 60.009 57.895 16.59 0.00 36.12 5.10
5209 5797 0.999228 GACGTGTCTGTGACTGCGAG 60.999 60.000 16.59 0.00 36.12 5.03
5210 5798 2.368105 CGTGTCTGTGACTGCGAGC 61.368 63.158 8.58 0.00 35.24 5.03
5211 5799 1.300156 GTGTCTGTGACTGCGAGCA 60.300 57.895 0.00 0.00 33.15 4.26
5212 5800 1.300156 TGTCTGTGACTGCGAGCAC 60.300 57.895 0.00 0.00 33.15 4.40
5213 5801 2.050077 TCTGTGACTGCGAGCACG 60.050 61.111 0.00 0.00 37.83 5.34
5223 5811 3.991621 CGAGCACGCACGCTATTA 58.008 55.556 0.00 0.00 44.01 0.98
5224 5812 2.506544 CGAGCACGCACGCTATTAT 58.493 52.632 0.00 0.00 44.01 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.102578 GGGAGCATACATTTGGCTGTT 58.897 47.619 0.00 0.00 38.15 3.16
49 50 2.738314 GCAAACAACCAATTCATGAGGC 59.262 45.455 0.00 0.00 0.00 4.70
66 67 3.472652 TCTTTGCTTCGGTTAGAGCAAA 58.527 40.909 18.79 18.79 43.61 3.68
67 68 3.120321 TCTTTGCTTCGGTTAGAGCAA 57.880 42.857 6.67 6.67 39.45 3.91
68 69 2.831685 TCTTTGCTTCGGTTAGAGCA 57.168 45.000 0.00 0.00 33.43 4.26
69 70 3.120165 CCTTTCTTTGCTTCGGTTAGAGC 60.120 47.826 0.00 0.00 0.00 4.09
86 87 4.168883 ACCTATCCCTACCATAGCCTTTC 58.831 47.826 0.00 0.00 0.00 2.62
111 112 4.258702 AGTTGGCTACTGTCTAGTGTTG 57.741 45.455 0.00 0.00 37.78 3.33
112 113 4.344102 TGAAGTTGGCTACTGTCTAGTGTT 59.656 41.667 1.53 0.00 37.78 3.32
113 114 3.895656 TGAAGTTGGCTACTGTCTAGTGT 59.104 43.478 1.53 0.00 37.78 3.55
125 126 5.339530 GGGGATATGCTATATGAAGTTGGCT 60.340 44.000 0.00 0.00 0.00 4.75
150 151 3.308053 CGTCAGTGTATTGAGAATGCCTG 59.692 47.826 0.00 0.00 0.00 4.85
151 152 3.525537 CGTCAGTGTATTGAGAATGCCT 58.474 45.455 0.00 0.00 0.00 4.75
187 188 5.863935 AGCTTCCGTTTTAATCTGAAATTGC 59.136 36.000 0.00 0.00 0.00 3.56
199 200 3.250040 GCTTCAAGTGAGCTTCCGTTTTA 59.750 43.478 0.00 0.00 31.49 1.52
280 281 2.819608 GACATGTTGTGTATTGGCAGGT 59.180 45.455 0.00 0.00 42.36 4.00
317 318 7.011857 GCAAATAGATAAGACTGAAGGAAGGTG 59.988 40.741 0.00 0.00 0.00 4.00
330 331 5.126067 GTGGCCTCAAGCAAATAGATAAGA 58.874 41.667 3.32 0.00 46.50 2.10
336 337 2.134789 AGGTGGCCTCAAGCAAATAG 57.865 50.000 3.32 0.00 46.50 1.73
360 361 9.367160 TGTGTATATATCTCATTCCTCTTGTCA 57.633 33.333 0.00 0.00 0.00 3.58
383 384 5.508825 GCCTCACTATACCATCTCTCTTGTG 60.509 48.000 0.00 0.00 0.00 3.33
399 400 3.075005 GACCCGCCTGCCTCACTA 61.075 66.667 0.00 0.00 0.00 2.74
403 404 2.044946 ATTTGACCCGCCTGCCTC 60.045 61.111 0.00 0.00 0.00 4.70
413 414 1.875963 CCAGTCGTGGCATTTGACC 59.124 57.895 12.09 0.00 36.89 4.02
425 426 1.874345 AACCAGTCCGCTACCAGTCG 61.874 60.000 0.00 0.00 0.00 4.18
465 473 9.322773 CATAAGGTAATATGATGATTCGAGCAT 57.677 33.333 2.89 2.89 35.69 3.79
771 779 7.254898 GGACAAACTAGGTTAACGCTAACTTTT 60.255 37.037 8.50 1.91 38.01 2.27
778 786 4.347360 AAGGACAAACTAGGTTAACGCT 57.653 40.909 0.00 0.90 0.00 5.07
816 824 9.706529 ATAATTGAATTCCTTAAGGAGAAGCTT 57.293 29.630 23.11 15.45 46.36 3.74
830 838 6.283694 GCCTTCCCAGAAATAATTGAATTCC 58.716 40.000 2.27 0.00 0.00 3.01
831 839 5.979517 CGCCTTCCCAGAAATAATTGAATTC 59.020 40.000 0.00 0.00 0.00 2.17
832 840 5.422012 ACGCCTTCCCAGAAATAATTGAATT 59.578 36.000 0.00 0.00 0.00 2.17
833 841 4.956075 ACGCCTTCCCAGAAATAATTGAAT 59.044 37.500 0.00 0.00 0.00 2.57
834 842 4.157656 CACGCCTTCCCAGAAATAATTGAA 59.842 41.667 0.00 0.00 0.00 2.69
835 843 3.694072 CACGCCTTCCCAGAAATAATTGA 59.306 43.478 0.00 0.00 0.00 2.57
836 844 3.181487 CCACGCCTTCCCAGAAATAATTG 60.181 47.826 0.00 0.00 0.00 2.32
837 845 3.023832 CCACGCCTTCCCAGAAATAATT 58.976 45.455 0.00 0.00 0.00 1.40
838 846 2.241176 TCCACGCCTTCCCAGAAATAAT 59.759 45.455 0.00 0.00 0.00 1.28
839 847 1.631388 TCCACGCCTTCCCAGAAATAA 59.369 47.619 0.00 0.00 0.00 1.40
840 848 1.209504 CTCCACGCCTTCCCAGAAATA 59.790 52.381 0.00 0.00 0.00 1.40
841 849 0.035056 CTCCACGCCTTCCCAGAAAT 60.035 55.000 0.00 0.00 0.00 2.17
842 850 1.125093 TCTCCACGCCTTCCCAGAAA 61.125 55.000 0.00 0.00 0.00 2.52
843 851 0.909610 ATCTCCACGCCTTCCCAGAA 60.910 55.000 0.00 0.00 0.00 3.02
844 852 1.306141 ATCTCCACGCCTTCCCAGA 60.306 57.895 0.00 0.00 0.00 3.86
845 853 1.153289 CATCTCCACGCCTTCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
846 854 2.989639 CATCTCCACGCCTTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
847 855 2.514824 GCATCTCCACGCCTTCCC 60.515 66.667 0.00 0.00 0.00 3.97
848 856 1.817099 CAGCATCTCCACGCCTTCC 60.817 63.158 0.00 0.00 0.00 3.46
849 857 1.078848 ACAGCATCTCCACGCCTTC 60.079 57.895 0.00 0.00 0.00 3.46
850 858 1.078848 GACAGCATCTCCACGCCTT 60.079 57.895 0.00 0.00 0.00 4.35
851 859 2.236223 CTGACAGCATCTCCACGCCT 62.236 60.000 0.00 0.00 0.00 5.52
852 860 1.812922 CTGACAGCATCTCCACGCC 60.813 63.158 0.00 0.00 0.00 5.68
853 861 0.179089 ATCTGACAGCATCTCCACGC 60.179 55.000 0.00 0.00 0.00 5.34
854 862 1.568606 CATCTGACAGCATCTCCACG 58.431 55.000 0.00 0.00 0.00 4.94
855 863 1.297664 GCATCTGACAGCATCTCCAC 58.702 55.000 0.00 0.00 0.00 4.02
856 864 0.179702 GGCATCTGACAGCATCTCCA 59.820 55.000 0.00 0.00 0.00 3.86
857 865 0.179702 TGGCATCTGACAGCATCTCC 59.820 55.000 0.00 0.00 0.00 3.71
858 866 1.584175 CTGGCATCTGACAGCATCTC 58.416 55.000 0.00 0.00 45.26 2.75
859 867 3.782632 CTGGCATCTGACAGCATCT 57.217 52.632 0.00 0.00 45.26 2.90
865 873 1.576577 ACATCTCCTGGCATCTGACA 58.423 50.000 0.00 0.00 0.00 3.58
866 874 3.827008 TTACATCTCCTGGCATCTGAC 57.173 47.619 0.00 0.00 0.00 3.51
867 875 4.471025 TCTTTTACATCTCCTGGCATCTGA 59.529 41.667 0.00 0.00 0.00 3.27
868 876 4.774124 TCTTTTACATCTCCTGGCATCTG 58.226 43.478 0.00 0.00 0.00 2.90
897 908 2.960957 ATTCGTGCGCCTCCTGATCG 62.961 60.000 4.18 0.00 0.00 3.69
921 932 1.596934 GAAGAGGGTGGATGTGCGA 59.403 57.895 0.00 0.00 0.00 5.10
930 941 2.060980 CGGAGGGAGGAAGAGGGTG 61.061 68.421 0.00 0.00 0.00 4.61
1068 1080 2.198183 GGCAGACCTGAGAGAGGAC 58.802 63.158 0.47 0.00 46.33 3.85
1148 1160 1.173043 AACAGAGACAGAGGCGAGAG 58.827 55.000 0.00 0.00 0.00 3.20
1283 1295 0.106918 AAAACCGAACTCAGCCACCA 60.107 50.000 0.00 0.00 0.00 4.17
1293 1305 1.104577 TCCAGCCACCAAAACCGAAC 61.105 55.000 0.00 0.00 0.00 3.95
1448 1460 5.572211 CAGCACCACACACATATTATCAAC 58.428 41.667 0.00 0.00 0.00 3.18
1455 1467 1.167851 GTGCAGCACCACACACATAT 58.832 50.000 15.27 0.00 36.77 1.78
1456 1468 0.179034 TGTGCAGCACCACACACATA 60.179 50.000 23.06 0.00 41.67 2.29
1477 1492 1.597663 GACTGAACAAACACCTGACGG 59.402 52.381 0.00 0.00 0.00 4.79
1506 1521 3.283751 CAAAACTAGTCAACCACCACCA 58.716 45.455 0.00 0.00 0.00 4.17
1513 1528 2.030805 CAGCAGGCAAAACTAGTCAACC 60.031 50.000 0.00 0.00 0.00 3.77
1568 1583 8.474831 TCAGAACTCAAAATCATCCGTCTATTA 58.525 33.333 0.00 0.00 0.00 0.98
1591 1606 0.374758 CCATTCGACGCAACCATCAG 59.625 55.000 0.00 0.00 0.00 2.90
1597 1612 2.785258 GGAGCCATTCGACGCAAC 59.215 61.111 0.00 0.00 0.00 4.17
1607 1622 3.898123 AGATCACTAATGTACGGAGCCAT 59.102 43.478 0.00 0.00 0.00 4.40
1773 2270 4.813027 ACCATGAATGTCAACAAATCTGC 58.187 39.130 0.00 0.00 0.00 4.26
1820 2317 2.888834 ATGTTTCCAGCAAACCACAC 57.111 45.000 0.00 0.00 43.52 3.82
2051 2549 5.982890 ACAGCAAATACAAATTAGGCACT 57.017 34.783 0.00 0.00 46.37 4.40
2053 2551 8.512966 TGTATACAGCAAATACAAATTAGGCA 57.487 30.769 0.08 0.00 36.99 4.75
2088 2586 2.814336 GTCCCCAATGAAGATAATCCGC 59.186 50.000 0.00 0.00 0.00 5.54
2383 2882 1.423161 AGCCCCTTAGATCCAATCAGC 59.577 52.381 0.00 0.00 0.00 4.26
2389 2888 0.918799 TTGGCAGCCCCTTAGATCCA 60.919 55.000 9.64 0.00 0.00 3.41
2441 2940 3.999663 AGCACAAGATACTCAAGTTCAGC 59.000 43.478 0.00 0.00 0.00 4.26
2450 2949 7.095857 GCATATACAACTCAGCACAAGATACTC 60.096 40.741 0.00 0.00 0.00 2.59
2469 2968 5.509840 CCCACAAGAGTAGGACAGCATATAC 60.510 48.000 0.00 0.00 0.00 1.47
2471 2970 3.389329 CCCACAAGAGTAGGACAGCATAT 59.611 47.826 0.00 0.00 0.00 1.78
2486 2985 1.606224 GCATTGGCTTTGTCCCACAAG 60.606 52.381 0.00 0.00 39.53 3.16
2499 2998 4.747810 AGCTATACAAGTTTTGCATTGGC 58.252 39.130 3.04 0.00 41.68 4.52
2500 2999 7.706159 TCATAGCTATACAAGTTTTGCATTGG 58.294 34.615 5.77 0.00 0.00 3.16
2503 3002 9.740239 CATTTCATAGCTATACAAGTTTTGCAT 57.260 29.630 5.77 0.00 0.00 3.96
2504 3003 8.190122 CCATTTCATAGCTATACAAGTTTTGCA 58.810 33.333 5.77 0.00 0.00 4.08
2505 3004 8.405531 TCCATTTCATAGCTATACAAGTTTTGC 58.594 33.333 5.77 0.00 0.00 3.68
2534 3042 7.502060 AAATCCTCTCTTTCCAGAATGAGTA 57.498 36.000 17.81 9.23 41.00 2.59
2535 3043 6.385766 AAATCCTCTCTTTCCAGAATGAGT 57.614 37.500 17.81 2.32 41.00 3.41
2536 3044 8.977267 AATAAATCCTCTCTTTCCAGAATGAG 57.023 34.615 14.17 14.17 39.69 2.90
2537 3045 8.776119 AGAATAAATCCTCTCTTTCCAGAATGA 58.224 33.333 0.00 0.00 39.69 2.57
2538 3046 8.977267 AGAATAAATCCTCTCTTTCCAGAATG 57.023 34.615 0.00 0.00 0.00 2.67
2542 3050 9.844257 ACAATAGAATAAATCCTCTCTTTCCAG 57.156 33.333 0.00 0.00 0.00 3.86
2569 3077 7.234577 TCACTTAATTTTGCCTCCAAGGTTATT 59.765 33.333 0.00 0.00 37.80 1.40
2573 3081 4.479158 TCACTTAATTTTGCCTCCAAGGT 58.521 39.130 0.00 0.00 37.80 3.50
2574 3082 5.185635 TGATCACTTAATTTTGCCTCCAAGG 59.814 40.000 0.00 0.00 38.80 3.61
2578 3086 5.183904 ACTGTGATCACTTAATTTTGCCTCC 59.816 40.000 25.55 0.00 0.00 4.30
2624 3132 6.638468 GTGAACTTTCCAAACAATTAGAGCTG 59.362 38.462 0.00 0.00 0.00 4.24
2635 3143 5.102313 CAGTTTCCAGTGAACTTTCCAAAC 58.898 41.667 0.00 0.00 35.26 2.93
2645 3153 4.843728 AGTGAACTTCAGTTTCCAGTGAA 58.156 39.130 0.00 0.00 39.63 3.18
2656 3164 5.974158 CACACCGATCTATAGTGAACTTCAG 59.026 44.000 0.00 0.00 35.47 3.02
2664 3172 1.686587 TGCCCACACCGATCTATAGTG 59.313 52.381 0.00 0.00 37.53 2.74
2665 3173 2.082140 TGCCCACACCGATCTATAGT 57.918 50.000 0.00 0.00 0.00 2.12
2669 3177 1.146041 GCATGCCCACACCGATCTA 59.854 57.895 6.36 0.00 0.00 1.98
2689 3197 4.319477 CGGTACTCGGCATCATTAAAATGG 60.319 45.833 3.00 0.00 34.68 3.16
2698 3206 0.821517 ATCAACGGTACTCGGCATCA 59.178 50.000 8.31 0.00 44.45 3.07
2699 3207 2.787601 TATCAACGGTACTCGGCATC 57.212 50.000 8.31 0.00 44.45 3.91
2703 3211 6.532657 AGTTTTATGTTATCAACGGTACTCGG 59.467 38.462 8.31 0.00 44.45 4.63
2711 3219 7.696453 GGACATCCAAGTTTTATGTTATCAACG 59.304 37.037 0.00 0.00 34.09 4.10
2712 3220 7.973944 GGGACATCCAAGTTTTATGTTATCAAC 59.026 37.037 0.00 0.00 34.09 3.18
2719 3227 4.396357 TGGGGACATCCAAGTTTTATGT 57.604 40.909 0.00 0.46 36.57 2.29
2752 3260 8.553459 TCAGTTCATCCTAGTTTGATCTTTTC 57.447 34.615 0.00 0.00 0.00 2.29
2756 3264 6.351711 CCACTCAGTTCATCCTAGTTTGATCT 60.352 42.308 0.00 0.00 0.00 2.75
2759 3267 4.563580 GCCACTCAGTTCATCCTAGTTTGA 60.564 45.833 0.00 0.00 0.00 2.69
2760 3268 3.686726 GCCACTCAGTTCATCCTAGTTTG 59.313 47.826 0.00 0.00 0.00 2.93
2766 3274 1.554160 CAGAGCCACTCAGTTCATCCT 59.446 52.381 0.00 0.00 32.06 3.24
2782 3290 2.110967 CATTGGCAGCCCGTCAGAG 61.111 63.158 9.64 0.00 0.00 3.35
2813 3323 4.457834 AAAGTTCAGACTATCCCTCACG 57.542 45.455 0.00 0.00 34.21 4.35
2848 3358 3.958798 GAGTAGGACAGCATACCCAACTA 59.041 47.826 0.00 0.00 31.89 2.24
2897 3408 8.043113 TGAGCATTTCAGTTTCATAGTGATACT 58.957 33.333 0.00 0.00 38.83 2.12
2903 3414 7.609146 TCAGAATGAGCATTTCAGTTTCATAGT 59.391 33.333 0.00 0.00 42.56 2.12
2919 3430 8.891671 AGAGATTCTCTATTTTCAGAATGAGC 57.108 34.615 14.61 0.00 42.63 4.26
3062 3574 4.751060 AGTCAATAAAATGGTGCATGCTG 58.249 39.130 20.33 4.53 0.00 4.41
3063 3575 5.450965 GCTAGTCAATAAAATGGTGCATGCT 60.451 40.000 20.33 0.00 0.00 3.79
3081 3593 5.406780 CATTTATCAATGGGACTCGCTAGTC 59.593 44.000 9.84 9.84 40.18 2.59
3082 3594 5.300752 CATTTATCAATGGGACTCGCTAGT 58.699 41.667 0.00 0.00 36.82 2.57
3083 3595 4.153117 GCATTTATCAATGGGACTCGCTAG 59.847 45.833 1.95 0.00 40.36 3.42
3084 3596 4.065088 GCATTTATCAATGGGACTCGCTA 58.935 43.478 1.95 0.00 40.36 4.26
3085 3597 2.880890 GCATTTATCAATGGGACTCGCT 59.119 45.455 1.95 0.00 40.36 4.93
3087 3599 4.096231 TGTTGCATTTATCAATGGGACTCG 59.904 41.667 1.95 0.00 40.36 4.18
3111 3623 8.328758 ACTGAAAGATGGATTACAAAGTATCCA 58.671 33.333 6.30 6.30 45.36 3.41
3117 3629 7.607991 AGGTACACTGAAAGATGGATTACAAAG 59.392 37.037 0.00 0.00 37.43 2.77
3128 3640 4.729868 AGCCAAAAGGTACACTGAAAGAT 58.270 39.130 0.00 0.00 37.43 2.40
3130 3642 4.097892 ACAAGCCAAAAGGTACACTGAAAG 59.902 41.667 0.00 0.00 42.29 2.62
3145 3657 7.540400 CGAAACAAACATATATTCACAAGCCAA 59.460 33.333 0.00 0.00 0.00 4.52
3178 3690 4.093743 TCTGTAGCTCTGTACCCATTTCA 58.906 43.478 0.00 0.00 0.00 2.69
3179 3691 4.737855 TCTGTAGCTCTGTACCCATTTC 57.262 45.455 0.00 0.00 0.00 2.17
3199 3711 0.949105 TTTCTTGGCCGAGACGCTTC 60.949 55.000 23.18 0.00 0.00 3.86
3226 3738 1.737793 CTAGGCAAACTTGGGTTAGCG 59.262 52.381 0.00 0.00 34.90 4.26
3264 3776 7.697691 AGCTGCAATATTAATAGACAACACAC 58.302 34.615 1.02 0.00 0.00 3.82
3271 3783 8.378172 TGGTGTAAGCTGCAATATTAATAGAC 57.622 34.615 1.02 0.00 33.76 2.59
3278 3790 3.700539 TGCATGGTGTAAGCTGCAATATT 59.299 39.130 1.02 0.00 42.36 1.28
3354 3866 2.485124 CCAAGTTGAATGCAAAGCCCAA 60.485 45.455 3.87 0.00 35.42 4.12
3410 3922 7.719633 TCAAGAAGAAGTTGGTATTTAAGTGCT 59.280 33.333 0.00 0.00 0.00 4.40
3446 3958 3.681593 AGCGTTATAGTGGGCAGAAAAA 58.318 40.909 0.00 0.00 0.00 1.94
3447 3959 3.343941 AGCGTTATAGTGGGCAGAAAA 57.656 42.857 0.00 0.00 0.00 2.29
3450 3962 4.344102 AGAATAAGCGTTATAGTGGGCAGA 59.656 41.667 0.00 0.00 0.00 4.26
3451 3963 4.632153 AGAATAAGCGTTATAGTGGGCAG 58.368 43.478 0.00 0.00 0.00 4.85
3464 3979 8.354011 AGTGTAAAATAGCAGTAGAATAAGCG 57.646 34.615 0.00 0.00 0.00 4.68
3472 3987 8.639761 ACCCTACATAGTGTAAAATAGCAGTAG 58.360 37.037 0.00 0.00 31.67 2.57
3474 3989 7.433537 ACCCTACATAGTGTAAAATAGCAGT 57.566 36.000 0.00 0.00 31.67 4.40
3480 3995 4.807304 CGCGAACCCTACATAGTGTAAAAT 59.193 41.667 0.00 0.00 31.67 1.82
3486 4001 2.357009 AGTACGCGAACCCTACATAGTG 59.643 50.000 15.93 0.00 0.00 2.74
3501 4019 1.933853 CAAAGAGGCATACCAGTACGC 59.066 52.381 0.00 0.00 39.06 4.42
3589 4107 8.574196 AAGGATTTTTAACAACAAACTGATCG 57.426 30.769 0.00 0.00 0.00 3.69
3613 4131 4.695396 ACAACAATGACTGTACACCGTAA 58.305 39.130 0.00 0.00 37.23 3.18
3616 4134 4.748102 AGTAACAACAATGACTGTACACCG 59.252 41.667 0.00 0.00 37.23 4.94
3627 4145 3.976942 GCACTTCAGCAGTAACAACAATG 59.023 43.478 0.00 0.00 32.76 2.82
3657 4175 2.806244 CCTGTAGGAAAACGGAAGTGTG 59.194 50.000 0.00 0.00 40.90 3.82
3665 4183 2.972625 TCATCAGCCTGTAGGAAAACG 58.027 47.619 1.17 0.00 37.39 3.60
3666 4184 7.671302 TCTATATCATCAGCCTGTAGGAAAAC 58.329 38.462 1.17 0.00 37.39 2.43
3758 4276 4.206375 TGCTGACCTTTTCAACAGAATGA 58.794 39.130 0.00 0.00 41.26 2.57
3797 4315 1.270414 ATGAGGGACAGAGTGGCAGG 61.270 60.000 0.00 0.00 0.00 4.85
3799 4317 0.545071 TGATGAGGGACAGAGTGGCA 60.545 55.000 0.00 0.00 0.00 4.92
3801 4319 0.539051 GGTGATGAGGGACAGAGTGG 59.461 60.000 0.00 0.00 0.00 4.00
3806 4324 0.107800 CAGCAGGTGATGAGGGACAG 60.108 60.000 0.00 0.00 32.25 3.51
3808 4326 0.326264 AACAGCAGGTGATGAGGGAC 59.674 55.000 6.61 0.00 35.09 4.46
3831 4350 3.400255 AGGCGTTTCTCTGAAAGGTAAC 58.600 45.455 12.28 5.78 0.00 2.50
3835 4354 3.990318 AAAAGGCGTTTCTCTGAAAGG 57.010 42.857 4.63 7.97 0.00 3.11
3843 4362 3.564225 CAGGAACACTAAAAGGCGTTTCT 59.436 43.478 4.63 0.00 0.00 2.52
3858 4384 3.644265 TGTAGTGGAAGTAAGCAGGAACA 59.356 43.478 0.00 0.00 0.00 3.18
3873 4400 1.183549 AGGCTTCGTAGGTGTAGTGG 58.816 55.000 0.00 0.00 0.00 4.00
3879 4406 3.502211 ACAAATCAAAGGCTTCGTAGGTG 59.498 43.478 0.00 0.00 0.00 4.00
3880 4407 3.751518 ACAAATCAAAGGCTTCGTAGGT 58.248 40.909 0.00 0.00 0.00 3.08
3882 4409 5.613358 AGAACAAATCAAAGGCTTCGTAG 57.387 39.130 0.00 0.00 0.00 3.51
3885 4412 5.613358 ACTAGAACAAATCAAAGGCTTCG 57.387 39.130 0.00 0.00 0.00 3.79
3886 4413 8.138074 AGAAAACTAGAACAAATCAAAGGCTTC 58.862 33.333 0.00 0.00 0.00 3.86
3887 4414 8.011844 AGAAAACTAGAACAAATCAAAGGCTT 57.988 30.769 0.00 0.00 0.00 4.35
3890 4417 9.617975 GATGAGAAAACTAGAACAAATCAAAGG 57.382 33.333 0.00 0.00 0.00 3.11
3939 4466 6.325545 AGTGGAAATATGGCATTTCACATCAT 59.674 34.615 4.78 0.00 39.18 2.45
3977 4504 3.284617 TGCTGAATCATGAGAATGGTGG 58.715 45.455 0.09 0.00 0.00 4.61
4051 4582 8.133024 TCATGAACCTGCCAAAGTAATTAAAT 57.867 30.769 0.00 0.00 0.00 1.40
4053 4584 6.152661 CCTCATGAACCTGCCAAAGTAATTAA 59.847 38.462 0.00 0.00 0.00 1.40
4054 4585 5.652014 CCTCATGAACCTGCCAAAGTAATTA 59.348 40.000 0.00 0.00 0.00 1.40
4055 4586 4.463891 CCTCATGAACCTGCCAAAGTAATT 59.536 41.667 0.00 0.00 0.00 1.40
4056 4587 4.019174 CCTCATGAACCTGCCAAAGTAAT 58.981 43.478 0.00 0.00 0.00 1.89
4107 4638 0.748729 CGTACTCGAGGGCTCCTTCT 60.749 60.000 18.41 0.00 39.71 2.85
4134 4665 0.968901 AAGGCCTGACGATACGGTCA 60.969 55.000 5.69 0.00 44.25 4.02
4239 4771 1.817447 GTCTACGGCTAACTCTGGTGT 59.183 52.381 0.00 0.00 0.00 4.16
4341 4882 1.682740 GGGAAACCGGAGACAACAAA 58.317 50.000 9.46 0.00 43.64 2.83
4373 4914 1.066422 CTTCCTGCTATCGCGCTGA 59.934 57.895 5.56 4.94 39.65 4.26
4377 4918 0.596083 CACCTCTTCCTGCTATCGCG 60.596 60.000 0.00 0.00 39.65 5.87
4429 4970 1.885850 ACGGTGTTTCTCGGTGTGC 60.886 57.895 0.00 0.00 0.00 4.57
4443 4984 4.675146 GCAAAATCATCAACTATGCACGGT 60.675 41.667 0.00 0.00 35.38 4.83
4447 4988 3.437428 GCGCAAAATCATCAACTATGCA 58.563 40.909 0.30 0.00 35.38 3.96
4451 4992 2.816672 TGTGGCGCAAAATCATCAACTA 59.183 40.909 10.83 0.00 0.00 2.24
4452 4993 1.612950 TGTGGCGCAAAATCATCAACT 59.387 42.857 10.83 0.00 0.00 3.16
4453 4994 2.063156 TGTGGCGCAAAATCATCAAC 57.937 45.000 10.83 0.00 0.00 3.18
4464 5005 2.491298 ACATGAACATTAATGTGGCGCA 59.509 40.909 21.46 16.34 41.61 6.09
4469 5010 7.536281 CACTGACTCAACATGAACATTAATGTG 59.464 37.037 21.46 11.45 41.61 3.21
4482 5023 0.320771 GCGGACCACTGACTCAACAT 60.321 55.000 0.00 0.00 0.00 2.71
4586 5140 2.037136 CCGCTGCAACCTTCCTGAG 61.037 63.158 0.00 0.00 0.00 3.35
4727 5281 1.869767 CCTCAATTATCCAGCGACAGC 59.130 52.381 0.00 0.00 45.58 4.40
4810 5377 8.352137 ACAGTACAATCATTTCAATCATTGGA 57.648 30.769 0.00 0.00 31.62 3.53
4962 5543 0.726827 TTCTACGCGTCGAACCGTAT 59.273 50.000 20.76 0.00 38.97 3.06
4971 5552 3.870007 TCATCGACTTATTCTACGCGTC 58.130 45.455 18.63 0.00 0.00 5.19
4987 5568 6.201806 CCATCATCAGATCATCATCATCATCG 59.798 42.308 0.00 0.00 30.20 3.84
5129 5717 3.723348 GTTTCTCACCCGCACCGC 61.723 66.667 0.00 0.00 0.00 5.68
5130 5718 2.280524 TGTTTCTCACCCGCACCG 60.281 61.111 0.00 0.00 0.00 4.94
5131 5719 3.340789 GTGTTTCTCACCCGCACC 58.659 61.111 0.00 0.00 40.84 5.01
5156 5744 0.103026 TGATTGATCGCCGAGACTGG 59.897 55.000 0.00 0.00 0.00 4.00
5157 5745 1.791204 CATGATTGATCGCCGAGACTG 59.209 52.381 0.00 0.00 0.00 3.51
5158 5746 1.269988 CCATGATTGATCGCCGAGACT 60.270 52.381 0.00 0.00 0.00 3.24
5159 5747 1.143305 CCATGATTGATCGCCGAGAC 58.857 55.000 0.00 0.00 0.00 3.36
5160 5748 1.039856 TCCATGATTGATCGCCGAGA 58.960 50.000 0.00 0.00 0.00 4.04
5161 5749 1.730612 CATCCATGATTGATCGCCGAG 59.269 52.381 0.00 0.00 0.00 4.63
5162 5750 1.608801 CCATCCATGATTGATCGCCGA 60.609 52.381 0.00 0.00 0.00 5.54
5163 5751 0.800631 CCATCCATGATTGATCGCCG 59.199 55.000 0.00 0.00 0.00 6.46
5164 5752 2.189594 TCCATCCATGATTGATCGCC 57.810 50.000 0.00 0.00 0.00 5.54
5167 5755 3.615937 CGTCGATCCATCCATGATTGATC 59.384 47.826 0.00 7.67 37.65 2.92
5168 5756 3.593096 CGTCGATCCATCCATGATTGAT 58.407 45.455 0.00 0.00 28.97 2.57
5169 5757 2.289010 CCGTCGATCCATCCATGATTGA 60.289 50.000 0.00 0.00 0.00 2.57
5170 5758 2.071540 CCGTCGATCCATCCATGATTG 58.928 52.381 0.00 0.00 0.00 2.67
5171 5759 1.970640 TCCGTCGATCCATCCATGATT 59.029 47.619 0.00 0.00 0.00 2.57
5172 5760 1.273606 GTCCGTCGATCCATCCATGAT 59.726 52.381 0.00 0.00 0.00 2.45
5173 5761 0.673985 GTCCGTCGATCCATCCATGA 59.326 55.000 0.00 0.00 0.00 3.07
5174 5762 0.664466 CGTCCGTCGATCCATCCATG 60.664 60.000 0.00 0.00 42.86 3.66
5175 5763 1.107538 ACGTCCGTCGATCCATCCAT 61.108 55.000 0.00 0.00 42.86 3.41
5176 5764 1.751544 ACGTCCGTCGATCCATCCA 60.752 57.895 0.00 0.00 42.86 3.41
5177 5765 1.299165 CACGTCCGTCGATCCATCC 60.299 63.158 0.00 0.00 42.86 3.51
5178 5766 0.591741 GACACGTCCGTCGATCCATC 60.592 60.000 0.00 0.00 42.86 3.51
5179 5767 1.030488 AGACACGTCCGTCGATCCAT 61.030 55.000 0.00 0.00 40.98 3.41
5180 5768 1.673337 AGACACGTCCGTCGATCCA 60.673 57.895 0.00 0.00 40.98 3.41
5181 5769 1.226323 CAGACACGTCCGTCGATCC 60.226 63.158 0.00 0.00 40.98 3.36
5182 5770 0.793478 CACAGACACGTCCGTCGATC 60.793 60.000 0.00 2.35 40.98 3.69
5183 5771 1.209383 CACAGACACGTCCGTCGAT 59.791 57.895 0.00 0.00 40.98 3.59
5184 5772 1.888638 TCACAGACACGTCCGTCGA 60.889 57.895 0.00 0.00 40.98 4.20
5185 5773 1.724929 GTCACAGACACGTCCGTCG 60.725 63.158 0.84 0.00 40.98 5.12
5186 5774 0.660595 CAGTCACAGACACGTCCGTC 60.661 60.000 0.00 0.00 34.60 4.79
5187 5775 1.359117 CAGTCACAGACACGTCCGT 59.641 57.895 0.00 0.00 34.60 4.69
5188 5776 2.016704 GCAGTCACAGACACGTCCG 61.017 63.158 0.00 0.00 34.60 4.79
5189 5777 2.016704 CGCAGTCACAGACACGTCC 61.017 63.158 0.00 0.00 34.60 4.79
5190 5778 0.999228 CTCGCAGTCACAGACACGTC 60.999 60.000 10.77 0.00 36.36 4.34
5191 5779 1.008424 CTCGCAGTCACAGACACGT 60.008 57.895 10.77 0.00 36.36 4.49
5192 5780 2.368105 GCTCGCAGTCACAGACACG 61.368 63.158 0.00 3.48 36.32 4.49
5193 5781 1.300156 TGCTCGCAGTCACAGACAC 60.300 57.895 0.00 0.00 34.60 3.67
5194 5782 1.300156 GTGCTCGCAGTCACAGACA 60.300 57.895 0.00 0.00 34.60 3.41
5195 5783 2.368105 CGTGCTCGCAGTCACAGAC 61.368 63.158 0.00 0.00 33.41 3.51
5196 5784 2.050077 CGTGCTCGCAGTCACAGA 60.050 61.111 0.00 0.00 33.41 3.41
5206 5794 2.506544 ATAATAGCGTGCGTGCTCG 58.493 52.632 11.53 11.53 45.87 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.