Multiple sequence alignment - TraesCS7A01G075800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G075800 chr7A 100.000 2570 0 0 1 2570 41454043 41456612 0.000000e+00 4747.0
1 TraesCS7A01G075800 chr7A 97.222 36 1 0 13 48 711303275 711303240 7.680000e-06 62.1
2 TraesCS7A01G075800 chr7D 92.202 1667 79 18 586 2232 41802261 41803896 0.000000e+00 2311.0
3 TraesCS7A01G075800 chr7D 88.716 257 28 1 2313 2569 1412347 1412092 1.920000e-81 313.0
4 TraesCS7A01G075800 chr4A 91.081 1323 69 18 586 1883 648949889 648951187 0.000000e+00 1744.0
5 TraesCS7A01G075800 chr4A 92.742 620 25 5 1956 2570 648951189 648951793 0.000000e+00 878.0
6 TraesCS7A01G075800 chr4A 90.347 259 23 2 2313 2570 556295134 556294877 3.170000e-89 339.0
7 TraesCS7A01G075800 chr1B 94.558 588 26 1 1 588 669950157 669950738 0.000000e+00 904.0
8 TraesCS7A01G075800 chr1B 71.795 468 111 18 7 466 614818484 614818030 2.090000e-21 113.0
9 TraesCS7A01G075800 chr2A 91.482 587 35 6 1 587 473727148 473727719 0.000000e+00 793.0
10 TraesCS7A01G075800 chr2A 96.875 32 1 0 2310 2341 136482361 136482392 1.000000e-03 54.7
11 TraesCS7A01G075800 chr2D 94.928 414 18 2 175 588 645856148 645856558 0.000000e+00 645.0
12 TraesCS7A01G075800 chr2D 93.382 136 9 0 1 136 645856013 645856148 4.340000e-48 202.0
13 TraesCS7A01G075800 chr6B 79.439 107 20 2 378 483 17043775 17043670 9.860000e-10 75.0
14 TraesCS7A01G075800 chr3B 85.714 70 5 4 378 446 807819291 807819356 4.590000e-08 69.4
15 TraesCS7A01G075800 chr1A 100.000 35 0 0 2315 2349 580627381 580627347 5.940000e-07 65.8
16 TraesCS7A01G075800 chr5D 97.143 35 0 1 2315 2348 238946501 238946467 9.930000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G075800 chr7A 41454043 41456612 2569 False 4747.0 4747 100.0000 1 2570 1 chr7A.!!$F1 2569
1 TraesCS7A01G075800 chr7D 41802261 41803896 1635 False 2311.0 2311 92.2020 586 2232 1 chr7D.!!$F1 1646
2 TraesCS7A01G075800 chr4A 648949889 648951793 1904 False 1311.0 1744 91.9115 586 2570 2 chr4A.!!$F1 1984
3 TraesCS7A01G075800 chr1B 669950157 669950738 581 False 904.0 904 94.5580 1 588 1 chr1B.!!$F1 587
4 TraesCS7A01G075800 chr2A 473727148 473727719 571 False 793.0 793 91.4820 1 587 1 chr2A.!!$F2 586
5 TraesCS7A01G075800 chr2D 645856013 645856558 545 False 423.5 645 94.1550 1 588 2 chr2D.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 642 0.655733 GGCGACAAATACCACGATGG 59.344 55.0 0.0 0.0 45.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2359 2397 0.030908 GCGTCTAGGAATGCTAGCGT 59.969 55.0 19.54 6.99 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 65 9.301153 CAACTTATATGCACAAAAGGAATTACC 57.699 33.333 0.00 0.00 39.35 2.85
74 81 5.104067 GGAATTACCTCCACTATTCCCTTGT 60.104 44.000 0.00 0.00 39.95 3.16
77 84 3.256704 ACCTCCACTATTCCCTTGTTGA 58.743 45.455 0.00 0.00 0.00 3.18
117 124 6.687604 TCGAAGGCGATGATAGAATTATCAA 58.312 36.000 1.78 0.00 40.97 2.57
140 147 0.834612 TAAGCCGTCCGGGAATGAAT 59.165 50.000 7.97 0.00 38.47 2.57
208 215 5.547465 ACGATTCACCATACACTTCAAGAA 58.453 37.500 0.00 0.00 0.00 2.52
330 337 3.355378 CCACTTGGCATAAATCCTGTCA 58.645 45.455 0.00 0.00 0.00 3.58
467 474 5.988310 ACAATGCATCTGAAATTTCCTCA 57.012 34.783 15.48 6.57 0.00 3.86
468 475 5.962433 ACAATGCATCTGAAATTTCCTCAG 58.038 37.500 15.48 7.45 41.47 3.35
505 512 6.294342 GCATTCAGCCTTTCATTCATAGCATA 60.294 38.462 0.00 0.00 37.23 3.14
511 518 8.737175 CAGCCTTTCATTCATAGCATATGTAAT 58.263 33.333 4.29 0.00 0.00 1.89
559 566 5.765576 TCATTAGCTAACAAGGTTGGGTA 57.234 39.130 8.70 1.09 0.00 3.69
575 582 7.495055 AGGTTGGGTATTTAGTATACACTTCG 58.505 38.462 5.50 0.00 36.14 3.79
578 585 7.643569 TGGGTATTTAGTATACACTTCGTGA 57.356 36.000 5.50 0.00 36.96 4.35
605 612 2.930562 AAGGTCAGGCCGGCTTCT 60.931 61.111 28.56 13.61 43.70 2.85
611 618 1.524621 CAGGCCGGCTTCTGTATGG 60.525 63.158 28.56 0.00 0.00 2.74
628 635 2.178235 GGGAGCGGCGACAAATACC 61.178 63.158 12.98 1.93 0.00 2.73
632 639 2.095847 GCGGCGACAAATACCACGA 61.096 57.895 12.98 0.00 0.00 4.35
635 642 0.655733 GGCGACAAATACCACGATGG 59.344 55.000 0.00 0.00 45.02 3.51
644 651 3.753294 ATACCACGATGGGAAGATGTC 57.247 47.619 8.57 0.00 43.37 3.06
689 701 4.082523 GCCTGCACCCGTCAGCTA 62.083 66.667 0.00 0.00 0.00 3.32
690 702 2.185350 CCTGCACCCGTCAGCTAG 59.815 66.667 0.00 0.00 0.00 3.42
691 703 2.510238 CTGCACCCGTCAGCTAGC 60.510 66.667 6.62 6.62 0.00 3.42
692 704 4.082523 TGCACCCGTCAGCTAGCC 62.083 66.667 12.13 0.00 0.00 3.93
696 708 4.880537 CCCGTCAGCTAGCCGCAG 62.881 72.222 12.13 0.72 42.61 5.18
712 725 3.345028 AGGGGATGCAGGCAAGCT 61.345 61.111 0.00 0.00 34.99 3.74
716 729 1.041447 GGGATGCAGGCAAGCTGAAT 61.041 55.000 0.00 0.00 34.99 2.57
719 732 1.956629 ATGCAGGCAAGCTGAATGGC 61.957 55.000 0.00 2.32 43.17 4.40
785 798 4.436183 GCTTGAGGAAGAAGTAATGAACGC 60.436 45.833 0.00 0.00 0.00 4.84
889 906 2.370281 AAGAGACCGTGTGCATGTAG 57.630 50.000 0.00 0.00 0.00 2.74
912 929 3.310860 CTCCCCAAGTCGAACCCCG 62.311 68.421 0.00 0.00 40.25 5.73
989 1006 5.038683 CGACGTAACCTATTGCATAACTCA 58.961 41.667 0.00 0.00 0.00 3.41
990 1007 5.173312 CGACGTAACCTATTGCATAACTCAG 59.827 44.000 0.00 0.00 0.00 3.35
991 1008 4.809426 ACGTAACCTATTGCATAACTCAGC 59.191 41.667 0.00 0.00 0.00 4.26
992 1009 4.808895 CGTAACCTATTGCATAACTCAGCA 59.191 41.667 0.00 0.00 39.32 4.41
993 1010 5.050769 CGTAACCTATTGCATAACTCAGCAG 60.051 44.000 0.00 0.00 42.39 4.24
994 1011 3.209410 ACCTATTGCATAACTCAGCAGC 58.791 45.455 0.00 0.00 42.39 5.25
996 1013 2.028420 ATTGCATAACTCAGCAGCGA 57.972 45.000 0.00 0.00 42.39 4.93
997 1014 2.028420 TTGCATAACTCAGCAGCGAT 57.972 45.000 0.00 0.00 42.39 4.58
1060 1077 3.127352 GATCTCGTCGCCGCCTTCT 62.127 63.158 0.00 0.00 0.00 2.85
1267 1284 4.838152 CGACCGTGCCCTCCCATG 62.838 72.222 0.00 0.00 0.00 3.66
1299 1316 3.854809 CGATGAAGACGGAAGAAGAAGAC 59.145 47.826 0.00 0.00 0.00 3.01
1590 1607 5.007136 GTGATCAACAGATCGGATTTTCTCC 59.993 44.000 0.00 0.00 40.83 3.71
1596 1613 4.827835 ACAGATCGGATTTTCTCCTCGATA 59.172 41.667 0.00 0.00 42.47 2.92
1612 1629 4.464244 CCTCGATATAGGATTCAGCAGGAA 59.536 45.833 0.00 0.00 39.15 3.36
1613 1630 5.047021 CCTCGATATAGGATTCAGCAGGAAA 60.047 44.000 0.00 0.00 39.39 3.13
1614 1631 6.351711 CCTCGATATAGGATTCAGCAGGAAAT 60.352 42.308 0.00 0.00 39.39 2.17
1615 1632 7.009179 TCGATATAGGATTCAGCAGGAAATT 57.991 36.000 0.00 0.00 39.39 1.82
1616 1633 8.134202 TCGATATAGGATTCAGCAGGAAATTA 57.866 34.615 0.00 0.00 39.39 1.40
1617 1634 8.593679 TCGATATAGGATTCAGCAGGAAATTAA 58.406 33.333 0.00 0.00 39.39 1.40
1618 1635 8.660373 CGATATAGGATTCAGCAGGAAATTAAC 58.340 37.037 0.00 0.00 39.39 2.01
1627 1644 7.615582 TCAGCAGGAAATTAACTAGTTGATG 57.384 36.000 18.56 8.47 0.00 3.07
1628 1645 7.394016 TCAGCAGGAAATTAACTAGTTGATGA 58.606 34.615 18.56 10.68 0.00 2.92
1655 1672 3.494924 CCATGATTGATCTTACCGGCTGA 60.495 47.826 0.00 0.00 0.00 4.26
1669 1686 1.674817 CGGCTGATTTTCCCGTGTACT 60.675 52.381 0.00 0.00 37.36 2.73
1676 1695 6.314400 GCTGATTTTCCCGTGTACTTGTAATA 59.686 38.462 0.00 0.00 0.00 0.98
1801 1833 5.701290 GTGCTGTAATGTTGTATAGGATCCC 59.299 44.000 8.55 0.00 0.00 3.85
1837 1869 5.203358 TGTGATCGATTGATGTCGTTTTC 57.797 39.130 0.00 0.00 42.07 2.29
1922 1954 5.798434 CGATCAGTTATACGAGTGTGTTTGA 59.202 40.000 0.00 0.00 0.00 2.69
1924 1956 7.009265 CGATCAGTTATACGAGTGTGTTTGATT 59.991 37.037 0.00 0.00 0.00 2.57
1926 1958 6.015504 CAGTTATACGAGTGTGTTTGATTGC 58.984 40.000 0.00 0.00 0.00 3.56
1927 1959 5.699001 AGTTATACGAGTGTGTTTGATTGCA 59.301 36.000 0.00 0.00 0.00 4.08
1928 1960 2.755836 ACGAGTGTGTTTGATTGCAC 57.244 45.000 0.00 0.00 36.26 4.57
2001 2033 0.541764 GGATCAAGGTTTGGCCACCA 60.542 55.000 3.88 0.00 39.62 4.17
2006 2038 2.123468 GGTTTGGCCACCACCACT 60.123 61.111 23.50 0.00 40.19 4.00
2067 2101 2.254546 ACCTTTCATTGTGCAGTCGA 57.745 45.000 0.00 0.00 0.00 4.20
2079 2113 3.063588 TGTGCAGTCGAACTCGTCTATAG 59.936 47.826 0.00 0.00 40.80 1.31
2082 2116 3.846744 GCAGTCGAACTCGTCTATAGCTG 60.847 52.174 0.00 0.00 40.80 4.24
2141 2175 4.614475 TCTTCATCTGGTCACCTAGTCAT 58.386 43.478 0.00 0.00 0.00 3.06
2142 2176 4.403752 TCTTCATCTGGTCACCTAGTCATG 59.596 45.833 0.00 0.00 0.00 3.07
2143 2177 3.981212 TCATCTGGTCACCTAGTCATGA 58.019 45.455 0.00 0.00 0.00 3.07
2144 2178 4.352893 TCATCTGGTCACCTAGTCATGAA 58.647 43.478 0.00 0.00 0.00 2.57
2145 2179 4.964897 TCATCTGGTCACCTAGTCATGAAT 59.035 41.667 0.00 0.00 0.00 2.57
2146 2180 5.069648 TCATCTGGTCACCTAGTCATGAATC 59.930 44.000 0.00 0.00 0.00 2.52
2147 2181 4.352893 TCTGGTCACCTAGTCATGAATCA 58.647 43.478 0.00 0.00 0.00 2.57
2234 2272 7.601073 TTGTGCATGATATTACTAGCATAGC 57.399 36.000 0.00 0.00 44.39 2.97
2235 2273 6.108687 TGTGCATGATATTACTAGCATAGCC 58.891 40.000 0.00 4.12 44.39 3.93
2236 2274 5.525378 GTGCATGATATTACTAGCATAGCCC 59.475 44.000 0.00 0.00 44.39 5.19
2237 2275 5.426509 TGCATGATATTACTAGCATAGCCCT 59.573 40.000 0.00 0.00 44.39 5.19
2238 2276 6.611236 TGCATGATATTACTAGCATAGCCCTA 59.389 38.462 0.00 0.00 44.39 3.53
2239 2277 6.926272 GCATGATATTACTAGCATAGCCCTAC 59.074 42.308 0.00 0.00 44.39 3.18
2240 2278 7.201956 GCATGATATTACTAGCATAGCCCTACT 60.202 40.741 0.00 0.00 44.39 2.57
2259 2297 4.451629 ACTCCCTACACACTTATGAACG 57.548 45.455 0.00 0.00 0.00 3.95
2304 2342 4.258471 GCACGAAGACGCGAAAAATATTTG 60.258 41.667 15.93 0.00 43.96 2.32
2311 2349 6.660722 AGACGCGAAAAATATTTGTACACAA 58.339 32.000 15.93 0.00 0.00 3.33
2322 2360 0.542467 TGTACACAAGCCCGGTCCTA 60.542 55.000 0.00 0.00 0.00 2.94
2331 2369 1.064685 AGCCCGGTCCTAAGATTTTGG 60.065 52.381 0.00 0.00 0.00 3.28
2341 2379 4.068887 GATTTTGGGGGCCCGGGA 62.069 66.667 29.31 0.00 39.42 5.14
2359 2397 0.883833 GACGAAACTAGGACACGGGA 59.116 55.000 0.00 0.00 0.00 5.14
2377 2415 1.335142 GGACGCTAGCATTCCTAGACG 60.335 57.143 20.56 6.97 45.30 4.18
2539 2577 4.936411 CCAAATTGCATTTACCATCAAGCA 59.064 37.500 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 65 7.282585 TCATATTCAACAAGGGAATAGTGGAG 58.717 38.462 0.00 0.00 39.74 3.86
59 66 7.206789 TCATATTCAACAAGGGAATAGTGGA 57.793 36.000 0.00 0.00 39.74 4.02
60 67 7.720957 TCATCATATTCAACAAGGGAATAGTGG 59.279 37.037 0.00 0.00 39.74 4.00
61 68 8.681486 TCATCATATTCAACAAGGGAATAGTG 57.319 34.615 0.00 0.00 39.74 2.74
62 69 9.872684 ATTCATCATATTCAACAAGGGAATAGT 57.127 29.630 0.00 0.00 39.74 2.12
74 81 8.506437 GCCTTCGAATGTATTCATCATATTCAA 58.494 33.333 0.00 0.00 36.61 2.69
77 84 6.873605 TCGCCTTCGAATGTATTCATCATATT 59.126 34.615 0.00 0.00 42.44 1.28
117 124 2.021457 CATTCCCGGACGGCTTATTTT 58.979 47.619 0.73 0.00 0.00 1.82
350 357 9.010029 TCCTGTTTAAAAGTGGAGATTATTGAC 57.990 33.333 0.00 0.00 0.00 3.18
467 474 1.078143 GAATGCACCCTTCTCCGCT 60.078 57.895 0.00 0.00 0.00 5.52
468 475 1.372087 CTGAATGCACCCTTCTCCGC 61.372 60.000 0.00 0.00 0.00 5.54
575 582 4.082733 GGCCTGACCTTGTCTTATTTTCAC 60.083 45.833 0.00 0.00 33.15 3.18
578 585 3.081804 CGGCCTGACCTTGTCTTATTTT 58.918 45.455 0.00 0.00 35.61 1.82
605 612 2.173758 TTTGTCGCCGCTCCCATACA 62.174 55.000 0.00 0.00 0.00 2.29
611 618 1.448893 TGGTATTTGTCGCCGCTCC 60.449 57.895 0.00 0.00 0.00 4.70
628 635 2.093500 TCCTTGACATCTTCCCATCGTG 60.093 50.000 0.00 0.00 0.00 4.35
632 639 3.309410 CCCTTTCCTTGACATCTTCCCAT 60.309 47.826 0.00 0.00 0.00 4.00
635 642 2.095461 GCCCTTTCCTTGACATCTTCC 58.905 52.381 0.00 0.00 0.00 3.46
694 706 3.145551 GCTTGCCTGCATCCCCTG 61.146 66.667 0.00 0.00 0.00 4.45
695 707 3.345028 AGCTTGCCTGCATCCCCT 61.345 61.111 0.00 0.00 34.99 4.79
696 708 3.145551 CAGCTTGCCTGCATCCCC 61.146 66.667 0.00 0.00 34.21 4.81
889 906 0.673956 GTTCGACTTGGGGAGAAGCC 60.674 60.000 0.00 0.00 0.00 4.35
912 929 1.144503 TGTATAGGGGGAGTCCGAGAC 59.855 57.143 2.26 0.00 36.01 3.36
989 1006 3.904479 TCGCCATCGATCGCTGCT 61.904 61.111 13.34 0.00 40.21 4.24
1060 1077 3.083349 CATGGTGAGGGAGGCGGA 61.083 66.667 0.00 0.00 0.00 5.54
1149 1166 1.153289 CTTCATCTCCGGGCTGGTG 60.153 63.158 13.14 10.50 39.52 4.17
1152 1169 0.250209 CCATCTTCATCTCCGGGCTG 60.250 60.000 0.00 0.00 0.00 4.85
1267 1284 1.454722 GTCTTCATCGTCGTCGTAGC 58.545 55.000 1.33 0.00 38.33 3.58
1485 1502 4.794439 CGCACCTCGTCGGATGCA 62.794 66.667 13.95 0.00 38.75 3.96
1590 1607 5.651387 TTCCTGCTGAATCCTATATCGAG 57.349 43.478 0.00 0.00 0.00 4.04
1596 1613 8.718656 ACTAGTTAATTTCCTGCTGAATCCTAT 58.281 33.333 0.00 0.00 31.67 2.57
1636 1653 4.422073 AATCAGCCGGTAAGATCAATCA 57.578 40.909 1.90 0.00 0.00 2.57
1655 1672 8.483758 AGAGATATTACAAGTACACGGGAAAAT 58.516 33.333 0.00 0.00 0.00 1.82
1676 1695 6.689554 TGTCGATCTAGATACGTACAGAGAT 58.310 40.000 4.89 12.41 0.00 2.75
1772 1804 2.543777 ACAACATTACAGCACCGACT 57.456 45.000 0.00 0.00 0.00 4.18
1801 1833 2.027569 CGATCACATCAAACGTACGTGG 59.972 50.000 23.57 17.25 0.00 4.94
1837 1869 3.317993 GGAAATAAACATCATCACGGGGG 59.682 47.826 0.00 0.00 0.00 5.40
1924 1956 4.036971 GGGTGTGTGTTTAATTGTAGTGCA 59.963 41.667 0.00 0.00 0.00 4.57
1926 1958 5.333798 CGAGGGTGTGTGTTTAATTGTAGTG 60.334 44.000 0.00 0.00 0.00 2.74
1927 1959 4.753107 CGAGGGTGTGTGTTTAATTGTAGT 59.247 41.667 0.00 0.00 0.00 2.73
1928 1960 4.753107 ACGAGGGTGTGTGTTTAATTGTAG 59.247 41.667 0.00 0.00 0.00 2.74
1940 1972 1.524863 CCGAGAAGACGAGGGTGTGT 61.525 60.000 0.00 0.00 35.09 3.72
2001 2033 0.773644 ATGAGGTTGCTTCCAGTGGT 59.226 50.000 9.54 0.00 0.00 4.16
2067 2101 1.041437 GGGCCAGCTATAGACGAGTT 58.959 55.000 4.39 0.00 0.00 3.01
2141 2175 7.981789 GGTTGATGTACTAGTCTTCATGATTCA 59.018 37.037 0.00 0.00 0.00 2.57
2142 2176 7.981789 TGGTTGATGTACTAGTCTTCATGATTC 59.018 37.037 0.00 0.00 0.00 2.52
2143 2177 7.851228 TGGTTGATGTACTAGTCTTCATGATT 58.149 34.615 0.00 0.00 0.00 2.57
2144 2178 7.423844 TGGTTGATGTACTAGTCTTCATGAT 57.576 36.000 0.00 0.00 0.00 2.45
2145 2179 6.850752 TGGTTGATGTACTAGTCTTCATGA 57.149 37.500 0.00 0.00 0.00 3.07
2146 2180 7.819415 TCTTTGGTTGATGTACTAGTCTTCATG 59.181 37.037 0.00 0.00 0.00 3.07
2147 2181 7.907389 TCTTTGGTTGATGTACTAGTCTTCAT 58.093 34.615 0.00 3.19 0.00 2.57
2234 2272 4.543689 TCATAAGTGTGTAGGGAGTAGGG 58.456 47.826 0.00 0.00 0.00 3.53
2235 2273 5.450137 CGTTCATAAGTGTGTAGGGAGTAGG 60.450 48.000 0.00 0.00 0.00 3.18
2236 2274 5.579718 CGTTCATAAGTGTGTAGGGAGTAG 58.420 45.833 0.00 0.00 0.00 2.57
2237 2275 4.142315 GCGTTCATAAGTGTGTAGGGAGTA 60.142 45.833 0.00 0.00 0.00 2.59
2238 2276 3.368116 GCGTTCATAAGTGTGTAGGGAGT 60.368 47.826 0.00 0.00 0.00 3.85
2239 2277 3.119101 AGCGTTCATAAGTGTGTAGGGAG 60.119 47.826 0.00 0.00 0.00 4.30
2240 2278 2.829720 AGCGTTCATAAGTGTGTAGGGA 59.170 45.455 0.00 0.00 0.00 4.20
2259 2297 5.471116 TGCATACATACATGGATCAAAGAGC 59.529 40.000 0.00 0.00 0.00 4.09
2304 2342 0.609662 TTAGGACCGGGCTTGTGTAC 59.390 55.000 7.57 0.00 0.00 2.90
2311 2349 1.064685 CCAAAATCTTAGGACCGGGCT 60.065 52.381 7.57 0.00 0.00 5.19
2322 2360 2.038813 CCGGGCCCCCAAAATCTT 59.961 61.111 18.66 0.00 35.37 2.40
2341 2379 0.600057 GTCCCGTGTCCTAGTTTCGT 59.400 55.000 0.00 0.00 0.00 3.85
2355 2393 0.039074 CTAGGAATGCTAGCGTCCCG 60.039 60.000 25.97 17.06 0.00 5.14
2359 2397 0.030908 GCGTCTAGGAATGCTAGCGT 59.969 55.000 19.54 6.99 0.00 5.07
2363 2401 1.828595 TGGTTGCGTCTAGGAATGCTA 59.171 47.619 0.00 0.00 31.33 3.49
2395 2433 5.394663 CGTTGAGATGACACCTCTCCTAATT 60.395 44.000 0.00 0.00 38.70 1.40
2451 2489 3.648339 ACGCTTGATTTCTTGTGCATT 57.352 38.095 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.