Multiple sequence alignment - TraesCS7A01G075700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G075700 chr7A 100.000 2414 0 0 1 2414 41453071 41450658 0.000000e+00 4458.0
1 TraesCS7A01G075700 chr7A 78.974 390 60 18 2028 2407 304145657 304146034 1.850000e-61 246.0
2 TraesCS7A01G075700 chr2A 96.186 1442 46 3 1 1442 448567264 448568696 0.000000e+00 2350.0
3 TraesCS7A01G075700 chr2A 95.981 1443 57 1 1 1442 486287186 486285744 0.000000e+00 2342.0
4 TraesCS7A01G075700 chr2A 94.717 1079 51 2 365 1442 473646483 473645410 0.000000e+00 1672.0
5 TraesCS7A01G075700 chr2A 94.324 370 21 0 1 370 473721998 473721629 3.480000e-158 568.0
6 TraesCS7A01G075700 chr2A 81.328 241 41 4 1452 1690 768727240 768727478 2.450000e-45 193.0
7 TraesCS7A01G075700 chr1B 95.773 1443 57 2 1 1440 669940720 669939279 0.000000e+00 2324.0
8 TraesCS7A01G075700 chr4D 96.256 1362 49 1 82 1443 461336751 461335392 0.000000e+00 2231.0
9 TraesCS7A01G075700 chr5D 96.675 1263 41 1 182 1444 517367225 517368486 0.000000e+00 2098.0
10 TraesCS7A01G075700 chr5D 80.392 357 59 9 2028 2378 296365564 296365213 6.620000e-66 261.0
11 TraesCS7A01G075700 chr2D 92.577 1455 97 9 1 1447 645855032 645853581 0.000000e+00 2078.0
12 TraesCS7A01G075700 chr2D 81.711 339 52 7 2076 2408 298839708 298839374 8.500000e-70 274.0
13 TraesCS7A01G075700 chr2D 79.500 200 40 1 1491 1690 18189419 18189617 9.000000e-30 141.0
14 TraesCS7A01G075700 chr5A 96.691 1118 35 2 327 1443 547122309 547123425 0.000000e+00 1858.0
15 TraesCS7A01G075700 chr5A 92.857 42 1 2 60 100 631106405 631106365 2.590000e-05 60.2
16 TraesCS7A01G075700 chr2B 94.280 1084 54 4 1 1079 590599833 590600913 0.000000e+00 1652.0
17 TraesCS7A01G075700 chr2B 83.442 308 40 9 2076 2378 363485114 363485415 2.360000e-70 276.0
18 TraesCS7A01G075700 chr2B 81.250 80 15 0 1746 1825 770601535 770601456 5.570000e-07 65.8
19 TraesCS7A01G075700 chr2B 81.250 80 15 0 1746 1825 770604004 770603925 5.570000e-07 65.8
20 TraesCS7A01G075700 chr7B 91.445 865 68 6 581 1443 667215727 667214867 0.000000e+00 1182.0
21 TraesCS7A01G075700 chr7B 80.400 250 47 2 1442 1690 690023867 690023619 3.170000e-44 189.0
22 TraesCS7A01G075700 chr7D 85.787 978 113 13 1443 2410 41802259 41801298 0.000000e+00 1013.0
23 TraesCS7A01G075700 chr7D 78.295 258 51 5 1446 1701 269707124 269706870 6.910000e-36 161.0
24 TraesCS7A01G075700 chr7D 73.288 438 89 11 1466 1881 379766278 379766709 4.190000e-28 135.0
25 TraesCS7A01G075700 chr1A 94.884 606 30 1 835 1440 440705942 440705338 0.000000e+00 946.0
26 TraesCS7A01G075700 chr1A 78.261 115 16 8 1746 1857 552118464 552118572 5.570000e-07 65.8
27 TraesCS7A01G075700 chr4A 85.526 760 89 10 1658 2409 648949611 648948865 0.000000e+00 774.0
28 TraesCS7A01G075700 chr4A 78.543 247 51 2 1445 1690 584075552 584075797 6.910000e-36 161.0
29 TraesCS7A01G075700 chr3B 82.548 361 50 11 2024 2378 815466847 815467200 3.020000e-79 305.0
30 TraesCS7A01G075700 chr3A 81.972 355 54 6 2028 2378 589193801 589194149 2.350000e-75 292.0
31 TraesCS7A01G075700 chr3A 75.108 462 84 18 1443 1880 652728912 652729366 1.140000e-43 187.0
32 TraesCS7A01G075700 chr1D 81.742 356 55 9 2028 2378 454492144 454491794 3.040000e-74 289.0
33 TraesCS7A01G075700 chr6D 79.096 354 53 13 1442 1776 388207346 388207697 8.680000e-55 224.0
34 TraesCS7A01G075700 chr3D 77.395 261 54 5 1443 1701 390673338 390673081 1.500000e-32 150.0
35 TraesCS7A01G075700 chr4B 81.143 175 27 6 1443 1615 574429882 574430052 4.190000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G075700 chr7A 41450658 41453071 2413 True 4458 4458 100.000 1 2414 1 chr7A.!!$R1 2413
1 TraesCS7A01G075700 chr2A 448567264 448568696 1432 False 2350 2350 96.186 1 1442 1 chr2A.!!$F1 1441
2 TraesCS7A01G075700 chr2A 486285744 486287186 1442 True 2342 2342 95.981 1 1442 1 chr2A.!!$R3 1441
3 TraesCS7A01G075700 chr2A 473645410 473646483 1073 True 1672 1672 94.717 365 1442 1 chr2A.!!$R1 1077
4 TraesCS7A01G075700 chr1B 669939279 669940720 1441 True 2324 2324 95.773 1 1440 1 chr1B.!!$R1 1439
5 TraesCS7A01G075700 chr4D 461335392 461336751 1359 True 2231 2231 96.256 82 1443 1 chr4D.!!$R1 1361
6 TraesCS7A01G075700 chr5D 517367225 517368486 1261 False 2098 2098 96.675 182 1444 1 chr5D.!!$F1 1262
7 TraesCS7A01G075700 chr2D 645853581 645855032 1451 True 2078 2078 92.577 1 1447 1 chr2D.!!$R2 1446
8 TraesCS7A01G075700 chr5A 547122309 547123425 1116 False 1858 1858 96.691 327 1443 1 chr5A.!!$F1 1116
9 TraesCS7A01G075700 chr2B 590599833 590600913 1080 False 1652 1652 94.280 1 1079 1 chr2B.!!$F2 1078
10 TraesCS7A01G075700 chr7B 667214867 667215727 860 True 1182 1182 91.445 581 1443 1 chr7B.!!$R1 862
11 TraesCS7A01G075700 chr7D 41801298 41802259 961 True 1013 1013 85.787 1443 2410 1 chr7D.!!$R1 967
12 TraesCS7A01G075700 chr1A 440705338 440705942 604 True 946 946 94.884 835 1440 1 chr1A.!!$R1 605
13 TraesCS7A01G075700 chr4A 648948865 648949611 746 True 774 774 85.526 1658 2409 1 chr4A.!!$R1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 369 0.321919 TTCTCGCAAGGAGCAAGCAT 60.322 50.0 0.0 0.0 46.13 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1814 0.178068 GCCTGTGGATTCGCCTTCTA 59.822 55.0 0.0 0.0 37.63 2.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 4.524053 ACGCCTATTTCCCCTAAAAGAAG 58.476 43.478 0.00 0.00 0.00 2.85
125 126 5.066117 CGCCTATTTCCCCTAAAAGAAGTTC 59.934 44.000 0.00 0.00 0.00 3.01
167 168 5.508567 TGATTTTCTGGATGCTAATGGTGA 58.491 37.500 0.00 0.00 0.00 4.02
287 294 0.762418 TGGCCTTTTGAGAAGTCGGA 59.238 50.000 3.32 0.00 0.00 4.55
325 332 4.382040 GGAGCGCCTATCATTTAGCTATGA 60.382 45.833 2.29 1.69 38.78 2.15
362 369 0.321919 TTCTCGCAAGGAGCAAGCAT 60.322 50.000 0.00 0.00 46.13 3.79
446 456 6.810182 CCTAAGATGAAAGTTTTTGCATGGAG 59.190 38.462 0.00 0.00 32.45 3.86
490 500 6.322712 AGCAACTAACTTAGAGAGGAATCGAT 59.677 38.462 2.65 0.00 0.00 3.59
503 513 7.398618 AGAGAGGAATCGATGTCATATTGGTAT 59.601 37.037 0.00 0.00 0.00 2.73
533 543 2.819595 CGGAATGTGTGGGCGAGG 60.820 66.667 0.00 0.00 0.00 4.63
678 688 1.677576 CTTCACTTGCTTGCTGGTCAA 59.322 47.619 0.00 0.00 0.00 3.18
696 706 0.620556 AACAGAGCAATGTCCGGGAT 59.379 50.000 0.00 0.00 31.50 3.85
770 780 3.576078 TGCCAAATCTATTCCACCGAT 57.424 42.857 0.00 0.00 0.00 4.18
806 817 9.866798 TTGTGATTATCTATGCAGCTATCTTAG 57.133 33.333 0.00 0.00 0.00 2.18
1107 1124 3.470709 ACATGCGATTATGGAAGGAGTG 58.529 45.455 0.00 0.00 32.32 3.51
1124 1141 3.059884 GAGTGAGTCTCGCAATTCAACA 58.940 45.455 15.62 0.00 33.25 3.33
1128 1145 3.059884 GAGTCTCGCAATTCAACAGTCA 58.940 45.455 0.00 0.00 0.00 3.41
1464 1484 1.213013 CAGTCGGGGAGTCTTCGTG 59.787 63.158 5.79 0.00 0.00 4.35
1465 1485 2.126031 GTCGGGGAGTCTTCGTGC 60.126 66.667 5.79 0.00 0.00 5.34
1469 1489 1.450312 GGGGAGTCTTCGTGCATGG 60.450 63.158 5.98 0.00 0.00 3.66
1470 1490 2.109126 GGGAGTCTTCGTGCATGGC 61.109 63.158 5.98 0.00 0.00 4.40
1471 1491 2.109126 GGAGTCTTCGTGCATGGCC 61.109 63.158 5.98 0.00 0.00 5.36
1505 1526 1.071987 CCTGGAGCTGCAGTTGTCA 59.928 57.895 30.32 9.09 0.00 3.58
1506 1527 0.322277 CCTGGAGCTGCAGTTGTCAT 60.322 55.000 30.32 0.00 0.00 3.06
1508 1529 1.199327 CTGGAGCTGCAGTTGTCATTG 59.801 52.381 25.76 0.00 0.00 2.82
1514 1535 3.319972 AGCTGCAGTTGTCATTGTTGAAT 59.680 39.130 16.64 0.00 32.48 2.57
1527 1548 7.094248 TGTCATTGTTGAATCCTTGAATCGATT 60.094 33.333 11.20 11.20 32.48 3.34
1551 1572 4.935205 TGAAGAACCTCACACCAAATATCG 59.065 41.667 0.00 0.00 0.00 2.92
1554 1575 1.280710 ACCTCACACCAAATATCGCCA 59.719 47.619 0.00 0.00 0.00 5.69
1586 1607 3.015327 ACGTACGATGAGCTCTAACCTT 58.985 45.455 24.41 0.00 0.00 3.50
1591 1612 0.462759 ATGAGCTCTAACCTTGCCGC 60.463 55.000 16.19 0.00 0.00 6.53
1611 1632 3.854669 CGAGGAGCCGGCAGGAAT 61.855 66.667 31.54 7.13 41.02 3.01
1620 1641 0.953471 CCGGCAGGAATCAACGTTGA 60.953 55.000 31.41 31.41 41.02 3.18
1635 1656 4.792521 ACGTTGAAGCTCTGTCTAATCT 57.207 40.909 0.00 0.00 0.00 2.40
1643 1664 4.036518 AGCTCTGTCTAATCTGTCCCAAT 58.963 43.478 0.00 0.00 0.00 3.16
1646 1667 3.455910 TCTGTCTAATCTGTCCCAATGGG 59.544 47.826 13.28 13.28 46.11 4.00
1656 1677 3.370104 TGTCCCAATGGGCGAATTTTAT 58.630 40.909 14.88 0.00 43.94 1.40
1663 1684 5.221501 CCAATGGGCGAATTTTATGAGGATT 60.222 40.000 0.00 0.00 0.00 3.01
1684 1705 1.203112 AGAGCCTGGAAGACTGACTCA 60.203 52.381 0.00 0.00 34.07 3.41
1690 1711 4.061596 CCTGGAAGACTGACTCAAAGAAC 58.938 47.826 0.00 0.00 34.07 3.01
1702 1723 1.826487 AAAGAACAAACGCCGCCCT 60.826 52.632 0.00 0.00 0.00 5.19
1722 1743 4.887655 CCCTTGCGAGAATTAAAACCCTAT 59.112 41.667 1.22 0.00 0.00 2.57
1754 1775 3.389329 AGTTAGATCCGATGCACCAGAAT 59.611 43.478 0.00 0.00 0.00 2.40
1809 1830 2.821546 CGAATAGAAGGCGAATCCACA 58.178 47.619 0.00 0.00 37.29 4.17
1830 1851 0.811616 GCTTGCCGGTGAAGATCGAT 60.812 55.000 16.88 0.00 0.00 3.59
1856 1877 4.139859 GGAAGGTTTTCCCTAGCTAGTC 57.860 50.000 19.31 6.81 45.47 2.59
1857 1878 3.430513 GGAAGGTTTTCCCTAGCTAGTCG 60.431 52.174 19.31 9.13 45.47 4.18
1858 1879 1.481363 AGGTTTTCCCTAGCTAGTCGC 59.519 52.381 19.31 3.73 43.87 5.19
1936 1957 2.211250 ACGTCTTGCCTCCTACTACA 57.789 50.000 0.00 0.00 0.00 2.74
2000 2024 5.838531 TCGTGTAACTGTTTGGGATTTTT 57.161 34.783 0.00 0.00 31.75 1.94
2024 2048 7.875327 TCCTTTAAATTAAGTACAGATGGCC 57.125 36.000 0.00 0.00 0.00 5.36
2026 2050 6.833933 CCTTTAAATTAAGTACAGATGGCCCT 59.166 38.462 0.00 0.00 0.00 5.19
2039 2063 4.836736 CAGATGGCCCTGAATATCCATTTT 59.163 41.667 0.00 0.00 39.25 1.82
2071 2095 3.383825 GCTCATCTGCCCAATCAAGAAAT 59.616 43.478 0.00 0.00 0.00 2.17
2072 2096 4.736759 GCTCATCTGCCCAATCAAGAAATG 60.737 45.833 0.00 0.00 0.00 2.32
2140 2164 8.588290 TTTTGCATGGTAGATAATTTGGTACT 57.412 30.769 0.00 0.00 0.00 2.73
2314 2341 4.036734 GTCTGAAATTTGAAGCACACCTCA 59.963 41.667 0.00 0.00 0.00 3.86
2323 2350 0.952497 AGCACACCTCACGCATCAAG 60.952 55.000 0.00 0.00 0.00 3.02
2328 2355 3.002791 ACACCTCACGCATCAAGTTATG 58.997 45.455 0.00 0.00 0.00 1.90
2348 2375 8.147058 AGTTATGTACCATGCAAAACAAATTGA 58.853 29.630 0.00 0.00 31.84 2.57
2350 2377 7.982761 ATGTACCATGCAAAACAAATTGAAT 57.017 28.000 0.00 0.00 31.84 2.57
2410 2441 2.163390 CGCAGGTGCAGATGAGTCG 61.163 63.158 2.33 0.00 42.21 4.18
2411 2442 2.459442 GCAGGTGCAGATGAGTCGC 61.459 63.158 2.28 0.00 41.59 5.19
2412 2443 1.217511 CAGGTGCAGATGAGTCGCT 59.782 57.895 0.00 0.00 0.00 4.93
2413 2444 1.082679 CAGGTGCAGATGAGTCGCTG 61.083 60.000 8.11 8.11 35.28 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 7.347508 TCAGCAACTTTATTTAGACGAGAAC 57.652 36.000 0.00 0.00 0.00 3.01
125 126 9.267096 GAAAATCAGCAACTTTATTTAGACGAG 57.733 33.333 0.00 0.00 0.00 4.18
249 256 4.081476 GGCCAAGCAATAAAATCTTCCTGT 60.081 41.667 0.00 0.00 0.00 4.00
251 258 4.356436 AGGCCAAGCAATAAAATCTTCCT 58.644 39.130 5.01 0.00 0.00 3.36
287 294 3.003480 GCGCTCCTAACTGTGAAAGATT 58.997 45.455 0.00 0.00 0.00 2.40
325 332 0.108585 AAACGGTCCATGTGCTCACT 59.891 50.000 1.47 0.00 0.00 3.41
362 369 1.135960 TTCACCACCAGGACATGTGA 58.864 50.000 1.15 0.00 38.69 3.58
446 456 5.603170 TGCTAGTGTACCAGTAATTACCC 57.397 43.478 12.05 0.00 0.00 3.69
490 500 6.007485 TGTTGCCCTTATACCAATATGACA 57.993 37.500 0.00 0.00 0.00 3.58
503 513 1.102154 CATTCCGCATGTTGCCCTTA 58.898 50.000 0.00 0.00 41.12 2.69
678 688 1.496060 TATCCCGGACATTGCTCTGT 58.504 50.000 0.73 0.00 0.00 3.41
696 706 5.046087 CCTCCAGAGCACCATAATGATCATA 60.046 44.000 9.04 0.00 37.47 2.15
770 780 6.686378 GCATAGATAATCACAAGACACCTCCA 60.686 42.308 0.00 0.00 0.00 3.86
806 817 7.171678 CCATACTACCTAATTGTAGCAAAGAGC 59.828 40.741 3.48 0.00 41.57 4.09
825 836 3.104512 CACCTCTTCCACACCCATACTA 58.895 50.000 0.00 0.00 0.00 1.82
826 837 1.909302 CACCTCTTCCACACCCATACT 59.091 52.381 0.00 0.00 0.00 2.12
1107 1124 3.059884 TGACTGTTGAATTGCGAGACTC 58.940 45.455 0.00 0.00 0.00 3.36
1128 1145 3.678056 TGTAGCTGAACTGGTCGATTT 57.322 42.857 0.00 0.00 0.00 2.17
1447 1467 2.637383 GCACGAAGACTCCCCGACT 61.637 63.158 0.00 0.00 0.00 4.18
1449 1469 1.982395 ATGCACGAAGACTCCCCGA 60.982 57.895 0.00 0.00 0.00 5.14
1453 1473 2.109126 GGCCATGCACGAAGACTCC 61.109 63.158 0.00 0.00 0.00 3.85
1454 1474 2.109126 GGGCCATGCACGAAGACTC 61.109 63.158 4.39 0.00 0.00 3.36
1469 1489 4.858680 GCGCTGGTCCTTAGGGGC 62.859 72.222 0.00 0.00 36.26 5.80
1470 1490 4.176752 GGCGCTGGTCCTTAGGGG 62.177 72.222 7.64 0.00 0.00 4.79
1471 1491 4.176752 GGGCGCTGGTCCTTAGGG 62.177 72.222 7.64 0.00 34.09 3.53
1493 1514 2.780065 TCAACAATGACAACTGCAGC 57.220 45.000 15.27 0.00 0.00 5.25
1494 1515 4.022589 AGGATTCAACAATGACAACTGCAG 60.023 41.667 13.48 13.48 34.61 4.41
1495 1516 3.890756 AGGATTCAACAATGACAACTGCA 59.109 39.130 0.00 0.00 34.61 4.41
1496 1517 4.510038 AGGATTCAACAATGACAACTGC 57.490 40.909 0.00 0.00 34.61 4.40
1505 1526 7.829725 TCAAATCGATTCAAGGATTCAACAAT 58.170 30.769 11.83 0.00 31.95 2.71
1506 1527 7.213216 TCAAATCGATTCAAGGATTCAACAA 57.787 32.000 11.83 0.00 31.95 2.83
1508 1529 7.530010 TCTTCAAATCGATTCAAGGATTCAAC 58.470 34.615 21.22 0.00 31.95 3.18
1514 1535 5.560724 AGGTTCTTCAAATCGATTCAAGGA 58.439 37.500 21.22 14.65 0.00 3.36
1527 1548 5.411361 CGATATTTGGTGTGAGGTTCTTCAA 59.589 40.000 0.00 0.00 0.00 2.69
1564 1585 3.801698 AGGTTAGAGCTCATCGTACGTA 58.198 45.455 17.77 2.34 0.00 3.57
1568 1589 2.100916 GGCAAGGTTAGAGCTCATCGTA 59.899 50.000 17.77 0.00 0.00 3.43
1569 1590 1.134670 GGCAAGGTTAGAGCTCATCGT 60.135 52.381 17.77 4.45 0.00 3.73
1570 1591 1.576356 GGCAAGGTTAGAGCTCATCG 58.424 55.000 17.77 0.00 0.00 3.84
1571 1592 1.576356 CGGCAAGGTTAGAGCTCATC 58.424 55.000 17.77 5.40 0.00 2.92
1572 1593 0.462759 GCGGCAAGGTTAGAGCTCAT 60.463 55.000 17.77 3.63 0.00 2.90
1573 1594 1.079127 GCGGCAAGGTTAGAGCTCA 60.079 57.895 17.77 0.00 0.00 4.26
1574 1595 1.815840 GGCGGCAAGGTTAGAGCTC 60.816 63.158 5.27 5.27 0.00 4.09
1576 1597 2.824489 GGGCGGCAAGGTTAGAGC 60.824 66.667 12.47 0.00 0.00 4.09
1578 1599 4.090588 CGGGGCGGCAAGGTTAGA 62.091 66.667 12.47 0.00 0.00 2.10
1599 1620 2.436646 CGTTGATTCCTGCCGGCT 60.437 61.111 29.70 6.37 0.00 5.52
1602 1623 0.871722 TTCAACGTTGATTCCTGCCG 59.128 50.000 30.10 0.00 37.00 5.69
1607 1628 2.808543 ACAGAGCTTCAACGTTGATTCC 59.191 45.455 30.10 20.13 37.00 3.01
1611 1632 2.890808 AGACAGAGCTTCAACGTTGA 57.109 45.000 26.53 26.53 34.92 3.18
1620 1641 3.445008 TGGGACAGATTAGACAGAGCTT 58.555 45.455 0.00 0.00 0.00 3.74
1643 1664 5.935945 TCTAATCCTCATAAAATTCGCCCA 58.064 37.500 0.00 0.00 0.00 5.36
1646 1667 5.703130 AGGCTCTAATCCTCATAAAATTCGC 59.297 40.000 0.00 0.00 0.00 4.70
1656 1677 3.034635 GTCTTCCAGGCTCTAATCCTCA 58.965 50.000 0.00 0.00 0.00 3.86
1663 1684 2.041755 TGAGTCAGTCTTCCAGGCTCTA 59.958 50.000 0.00 0.00 0.00 2.43
1684 1705 1.388837 AAGGGCGGCGTTTGTTCTTT 61.389 50.000 11.48 0.00 0.00 2.52
1702 1723 7.990886 AGATACATAGGGTTTTAATTCTCGCAA 59.009 33.333 0.00 0.00 0.00 4.85
1722 1743 7.119407 GTGCATCGGATCTAACTAGTAGATACA 59.881 40.741 17.56 9.84 46.98 2.29
1734 1755 4.380531 GAATTCTGGTGCATCGGATCTAA 58.619 43.478 9.87 0.00 0.00 2.10
1735 1756 3.244215 GGAATTCTGGTGCATCGGATCTA 60.244 47.826 9.87 0.00 0.00 1.98
1781 1802 1.731700 CCTTCTATTCGCCCGTCGA 59.268 57.895 0.00 0.00 46.88 4.20
1791 1812 2.746472 GCCTGTGGATTCGCCTTCTATT 60.746 50.000 0.00 0.00 37.63 1.73
1793 1814 0.178068 GCCTGTGGATTCGCCTTCTA 59.822 55.000 0.00 0.00 37.63 2.10
1809 1830 1.078143 GATCTTCACCGGCAAGCCT 60.078 57.895 9.73 0.00 0.00 4.58
1857 1878 8.441089 AGAGCTTTTCTTTTCCTTCTAGAAGGC 61.441 40.741 37.09 24.14 44.71 4.35
1858 1879 6.939730 AGAGCTTTTCTTTTCCTTCTAGAAGG 59.060 38.462 36.48 36.48 45.63 3.46
1870 1891 2.952310 AGGCAACGAGAGCTTTTCTTTT 59.048 40.909 0.00 0.00 46.39 2.27
1936 1957 2.832643 TCATGGAGCAATTCCCACAT 57.167 45.000 0.00 0.00 46.19 3.21
2000 2024 6.831868 GGGCCATCTGTACTTAATTTAAAGGA 59.168 38.462 4.39 0.00 0.00 3.36
2023 2047 4.039609 GGGCTCAAAAATGGATATTCAGGG 59.960 45.833 0.00 0.00 0.00 4.45
2024 2048 4.650588 TGGGCTCAAAAATGGATATTCAGG 59.349 41.667 0.00 0.00 0.00 3.86
2026 2050 4.650588 CCTGGGCTCAAAAATGGATATTCA 59.349 41.667 0.00 0.00 0.00 2.57
2275 2302 6.669125 TTTCAGACCATTTGGACATTTGAT 57.331 33.333 3.01 0.00 38.94 2.57
2279 2306 7.065120 TCAAATTTCAGACCATTTGGACATT 57.935 32.000 3.01 0.00 39.76 2.71
2328 2355 7.008859 CGAATTCAATTTGTTTTGCATGGTAC 58.991 34.615 6.22 0.00 0.00 3.34
2350 2377 8.973835 ACAAACACTAGAAAAATTCAAACGAA 57.026 26.923 0.00 0.00 0.00 3.85
2370 2397 8.288217 TGCGGTGAAGATTATTTTAAACAAAC 57.712 30.769 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.