AutoCloner

Multiple sequence alignment - TraesCS7A01G075700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G075700	chr7A	100.000	2414	0	0	1	2414	41453071	41450658	0.000000e+00	4458.0
1	TraesCS7A01G075700	chr7A	78.974	390	60	18	2028	2407	304145657	304146034	1.850000e-61	246.0
2	TraesCS7A01G075700	chr2A	96.186	1442	46	3	1	1442	448567264	448568696	0.000000e+00	2350.0
3	TraesCS7A01G075700	chr2A	95.981	1443	57	1	1	1442	486287186	486285744	0.000000e+00	2342.0
4	TraesCS7A01G075700	chr2A	94.717	1079	51	2	365	1442	473646483	473645410	0.000000e+00	1672.0
5	TraesCS7A01G075700	chr2A	94.324	370	21	0	1	370	473721998	473721629	3.480000e-158	568.0
6	TraesCS7A01G075700	chr2A	81.328	241	41	4	1452	1690	768727240	768727478	2.450000e-45	193.0
7	TraesCS7A01G075700	chr1B	95.773	1443	57	2	1	1440	669940720	669939279	0.000000e+00	2324.0
8	TraesCS7A01G075700	chr4D	96.256	1362	49	1	82	1443	461336751	461335392	0.000000e+00	2231.0
9	TraesCS7A01G075700	chr5D	96.675	1263	41	1	182	1444	517367225	517368486	0.000000e+00	2098.0
10	TraesCS7A01G075700	chr5D	80.392	357	59	9	2028	2378	296365564	296365213	6.620000e-66	261.0
11	TraesCS7A01G075700	chr2D	92.577	1455	97	9	1	1447	645855032	645853581	0.000000e+00	2078.0
12	TraesCS7A01G075700	chr2D	81.711	339	52	7	2076	2408	298839708	298839374	8.500000e-70	274.0
13	TraesCS7A01G075700	chr2D	79.500	200	40	1	1491	1690	18189419	18189617	9.000000e-30	141.0
14	TraesCS7A01G075700	chr5A	96.691	1118	35	2	327	1443	547122309	547123425	0.000000e+00	1858.0
15	TraesCS7A01G075700	chr5A	92.857	42	1	2	60	100	631106405	631106365	2.590000e-05	60.2
16	TraesCS7A01G075700	chr2B	94.280	1084	54	4	1	1079	590599833	590600913	0.000000e+00	1652.0
17	TraesCS7A01G075700	chr2B	83.442	308	40	9	2076	2378	363485114	363485415	2.360000e-70	276.0
18	TraesCS7A01G075700	chr2B	81.250	80	15	0	1746	1825	770601535	770601456	5.570000e-07	65.8
19	TraesCS7A01G075700	chr2B	81.250	80	15	0	1746	1825	770604004	770603925	5.570000e-07	65.8
20	TraesCS7A01G075700	chr7B	91.445	865	68	6	581	1443	667215727	667214867	0.000000e+00	1182.0
21	TraesCS7A01G075700	chr7B	80.400	250	47	2	1442	1690	690023867	690023619	3.170000e-44	189.0
22	TraesCS7A01G075700	chr7D	85.787	978	113	13	1443	2410	41802259	41801298	0.000000e+00	1013.0
23	TraesCS7A01G075700	chr7D	78.295	258	51	5	1446	1701	269707124	269706870	6.910000e-36	161.0
24	TraesCS7A01G075700	chr7D	73.288	438	89	11	1466	1881	379766278	379766709	4.190000e-28	135.0
25	TraesCS7A01G075700	chr1A	94.884	606	30	1	835	1440	440705942	440705338	0.000000e+00	946.0
26	TraesCS7A01G075700	chr1A	78.261	115	16	8	1746	1857	552118464	552118572	5.570000e-07	65.8
27	TraesCS7A01G075700	chr4A	85.526	760	89	10	1658	2409	648949611	648948865	0.000000e+00	774.0
28	TraesCS7A01G075700	chr4A	78.543	247	51	2	1445	1690	584075552	584075797	6.910000e-36	161.0
29	TraesCS7A01G075700	chr3B	82.548	361	50	11	2024	2378	815466847	815467200	3.020000e-79	305.0
30	TraesCS7A01G075700	chr3A	81.972	355	54	6	2028	2378	589193801	589194149	2.350000e-75	292.0
31	TraesCS7A01G075700	chr3A	75.108	462	84	18	1443	1880	652728912	652729366	1.140000e-43	187.0
32	TraesCS7A01G075700	chr1D	81.742	356	55	9	2028	2378	454492144	454491794	3.040000e-74	289.0
33	TraesCS7A01G075700	chr6D	79.096	354	53	13	1442	1776	388207346	388207697	8.680000e-55	224.0
34	TraesCS7A01G075700	chr3D	77.395	261	54	5	1443	1701	390673338	390673081	1.500000e-32	150.0
35	TraesCS7A01G075700	chr4B	81.143	175	27	6	1443	1615	574429882	574430052	4.190000e-28	135.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G075700	chr7A	41450658	41453071	2413	True	4458	4458	100.000	1	2414	1	chr7A.!!$R1	2413
1	TraesCS7A01G075700	chr2A	448567264	448568696	1432	False	2350	2350	96.186	1	1442	1	chr2A.!!$F1	1441
2	TraesCS7A01G075700	chr2A	486285744	486287186	1442	True	2342	2342	95.981	1	1442	1	chr2A.!!$R3	1441
3	TraesCS7A01G075700	chr2A	473645410	473646483	1073	True	1672	1672	94.717	365	1442	1	chr2A.!!$R1	1077
4	TraesCS7A01G075700	chr1B	669939279	669940720	1441	True	2324	2324	95.773	1	1440	1	chr1B.!!$R1	1439
5	TraesCS7A01G075700	chr4D	461335392	461336751	1359	True	2231	2231	96.256	82	1443	1	chr4D.!!$R1	1361
6	TraesCS7A01G075700	chr5D	517367225	517368486	1261	False	2098	2098	96.675	182	1444	1	chr5D.!!$F1	1262
7	TraesCS7A01G075700	chr2D	645853581	645855032	1451	True	2078	2078	92.577	1	1447	1	chr2D.!!$R2	1446
8	TraesCS7A01G075700	chr5A	547122309	547123425	1116	False	1858	1858	96.691	327	1443	1	chr5A.!!$F1	1116
9	TraesCS7A01G075700	chr2B	590599833	590600913	1080	False	1652	1652	94.280	1	1079	1	chr2B.!!$F2	1078
10	TraesCS7A01G075700	chr7B	667214867	667215727	860	True	1182	1182	91.445	581	1443	1	chr7B.!!$R1	862
11	TraesCS7A01G075700	chr7D	41801298	41802259	961	True	1013	1013	85.787	1443	2410	1	chr7D.!!$R1	967
12	TraesCS7A01G075700	chr1A	440705338	440705942	604	True	946	946	94.884	835	1440	1	chr1A.!!$R1	605
13	TraesCS7A01G075700	chr4A	648948865	648949611	746	True	774	774	85.526	1658	2409	1	chr4A.!!$R1	751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
362	369	0.321919	TTCTCGCAAGGAGCAAGCAT	60.322	50.0	0.0	0.0	46.13	3.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1793	1814	0.178068	GCCTGTGGATTCGCCTTCTA	59.822	55.0	0.0	0.0	37.63	2.1	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
122	123	4.524053	ACGCCTATTTCCCCTAAAAGAAG	58.476	43.478	0.00	0.00	0.00	2.85
125	126	5.066117	CGCCTATTTCCCCTAAAAGAAGTTC	59.934	44.000	0.00	0.00	0.00	3.01
167	168	5.508567	TGATTTTCTGGATGCTAATGGTGA	58.491	37.500	0.00	0.00	0.00	4.02
287	294	0.762418	TGGCCTTTTGAGAAGTCGGA	59.238	50.000	3.32	0.00	0.00	4.55
325	332	4.382040	GGAGCGCCTATCATTTAGCTATGA	60.382	45.833	2.29	1.69	38.78	2.15
362	369	0.321919	TTCTCGCAAGGAGCAAGCAT	60.322	50.000	0.00	0.00	46.13	3.79
446	456	6.810182	CCTAAGATGAAAGTTTTTGCATGGAG	59.190	38.462	0.00	0.00	32.45	3.86
490	500	6.322712	AGCAACTAACTTAGAGAGGAATCGAT	59.677	38.462	2.65	0.00	0.00	3.59
503	513	7.398618	AGAGAGGAATCGATGTCATATTGGTAT	59.601	37.037	0.00	0.00	0.00	2.73
533	543	2.819595	CGGAATGTGTGGGCGAGG	60.820	66.667	0.00	0.00	0.00	4.63
678	688	1.677576	CTTCACTTGCTTGCTGGTCAA	59.322	47.619	0.00	0.00	0.00	3.18
696	706	0.620556	AACAGAGCAATGTCCGGGAT	59.379	50.000	0.00	0.00	31.50	3.85
770	780	3.576078	TGCCAAATCTATTCCACCGAT	57.424	42.857	0.00	0.00	0.00	4.18
806	817	9.866798	TTGTGATTATCTATGCAGCTATCTTAG	57.133	33.333	0.00	0.00	0.00	2.18
1107	1124	3.470709	ACATGCGATTATGGAAGGAGTG	58.529	45.455	0.00	0.00	32.32	3.51
1124	1141	3.059884	GAGTGAGTCTCGCAATTCAACA	58.940	45.455	15.62	0.00	33.25	3.33
1128	1145	3.059884	GAGTCTCGCAATTCAACAGTCA	58.940	45.455	0.00	0.00	0.00	3.41
1464	1484	1.213013	CAGTCGGGGAGTCTTCGTG	59.787	63.158	5.79	0.00	0.00	4.35
1465	1485	2.126031	GTCGGGGAGTCTTCGTGC	60.126	66.667	5.79	0.00	0.00	5.34
1469	1489	1.450312	GGGGAGTCTTCGTGCATGG	60.450	63.158	5.98	0.00	0.00	3.66
1470	1490	2.109126	GGGAGTCTTCGTGCATGGC	61.109	63.158	5.98	0.00	0.00	4.40
1471	1491	2.109126	GGAGTCTTCGTGCATGGCC	61.109	63.158	5.98	0.00	0.00	5.36
1505	1526	1.071987	CCTGGAGCTGCAGTTGTCA	59.928	57.895	30.32	9.09	0.00	3.58
1506	1527	0.322277	CCTGGAGCTGCAGTTGTCAT	60.322	55.000	30.32	0.00	0.00	3.06
1508	1529	1.199327	CTGGAGCTGCAGTTGTCATTG	59.801	52.381	25.76	0.00	0.00	2.82
1514	1535	3.319972	AGCTGCAGTTGTCATTGTTGAAT	59.680	39.130	16.64	0.00	32.48	2.57
1527	1548	7.094248	TGTCATTGTTGAATCCTTGAATCGATT	60.094	33.333	11.20	11.20	32.48	3.34
1551	1572	4.935205	TGAAGAACCTCACACCAAATATCG	59.065	41.667	0.00	0.00	0.00	2.92
1554	1575	1.280710	ACCTCACACCAAATATCGCCA	59.719	47.619	0.00	0.00	0.00	5.69
1586	1607	3.015327	ACGTACGATGAGCTCTAACCTT	58.985	45.455	24.41	0.00	0.00	3.50
1591	1612	0.462759	ATGAGCTCTAACCTTGCCGC	60.463	55.000	16.19	0.00	0.00	6.53
1611	1632	3.854669	CGAGGAGCCGGCAGGAAT	61.855	66.667	31.54	7.13	41.02	3.01
1620	1641	0.953471	CCGGCAGGAATCAACGTTGA	60.953	55.000	31.41	31.41	41.02	3.18
1635	1656	4.792521	ACGTTGAAGCTCTGTCTAATCT	57.207	40.909	0.00	0.00	0.00	2.40
1643	1664	4.036518	AGCTCTGTCTAATCTGTCCCAAT	58.963	43.478	0.00	0.00	0.00	3.16
1646	1667	3.455910	TCTGTCTAATCTGTCCCAATGGG	59.544	47.826	13.28	13.28	46.11	4.00
1656	1677	3.370104	TGTCCCAATGGGCGAATTTTAT	58.630	40.909	14.88	0.00	43.94	1.40
1663	1684	5.221501	CCAATGGGCGAATTTTATGAGGATT	60.222	40.000	0.00	0.00	0.00	3.01
1684	1705	1.203112	AGAGCCTGGAAGACTGACTCA	60.203	52.381	0.00	0.00	34.07	3.41
1690	1711	4.061596	CCTGGAAGACTGACTCAAAGAAC	58.938	47.826	0.00	0.00	34.07	3.01
1702	1723	1.826487	AAAGAACAAACGCCGCCCT	60.826	52.632	0.00	0.00	0.00	5.19
1722	1743	4.887655	CCCTTGCGAGAATTAAAACCCTAT	59.112	41.667	1.22	0.00	0.00	2.57
1754	1775	3.389329	AGTTAGATCCGATGCACCAGAAT	59.611	43.478	0.00	0.00	0.00	2.40
1809	1830	2.821546	CGAATAGAAGGCGAATCCACA	58.178	47.619	0.00	0.00	37.29	4.17
1830	1851	0.811616	GCTTGCCGGTGAAGATCGAT	60.812	55.000	16.88	0.00	0.00	3.59
1856	1877	4.139859	GGAAGGTTTTCCCTAGCTAGTC	57.860	50.000	19.31	6.81	45.47	2.59
1857	1878	3.430513	GGAAGGTTTTCCCTAGCTAGTCG	60.431	52.174	19.31	9.13	45.47	4.18
1858	1879	1.481363	AGGTTTTCCCTAGCTAGTCGC	59.519	52.381	19.31	3.73	43.87	5.19
1936	1957	2.211250	ACGTCTTGCCTCCTACTACA	57.789	50.000	0.00	0.00	0.00	2.74
2000	2024	5.838531	TCGTGTAACTGTTTGGGATTTTT	57.161	34.783	0.00	0.00	31.75	1.94
2024	2048	7.875327	TCCTTTAAATTAAGTACAGATGGCC	57.125	36.000	0.00	0.00	0.00	5.36
2026	2050	6.833933	CCTTTAAATTAAGTACAGATGGCCCT	59.166	38.462	0.00	0.00	0.00	5.19
2039	2063	4.836736	CAGATGGCCCTGAATATCCATTTT	59.163	41.667	0.00	0.00	39.25	1.82
2071	2095	3.383825	GCTCATCTGCCCAATCAAGAAAT	59.616	43.478	0.00	0.00	0.00	2.17
2072	2096	4.736759	GCTCATCTGCCCAATCAAGAAATG	60.737	45.833	0.00	0.00	0.00	2.32
2140	2164	8.588290	TTTTGCATGGTAGATAATTTGGTACT	57.412	30.769	0.00	0.00	0.00	2.73
2314	2341	4.036734	GTCTGAAATTTGAAGCACACCTCA	59.963	41.667	0.00	0.00	0.00	3.86
2323	2350	0.952497	AGCACACCTCACGCATCAAG	60.952	55.000	0.00	0.00	0.00	3.02
2328	2355	3.002791	ACACCTCACGCATCAAGTTATG	58.997	45.455	0.00	0.00	0.00	1.90
2348	2375	8.147058	AGTTATGTACCATGCAAAACAAATTGA	58.853	29.630	0.00	0.00	31.84	2.57
2350	2377	7.982761	ATGTACCATGCAAAACAAATTGAAT	57.017	28.000	0.00	0.00	31.84	2.57
2410	2441	2.163390	CGCAGGTGCAGATGAGTCG	61.163	63.158	2.33	0.00	42.21	4.18
2411	2442	2.459442	GCAGGTGCAGATGAGTCGC	61.459	63.158	2.28	0.00	41.59	5.19
2412	2443	1.217511	CAGGTGCAGATGAGTCGCT	59.782	57.895	0.00	0.00	0.00	4.93
2413	2444	1.082679	CAGGTGCAGATGAGTCGCTG	61.083	60.000	8.11	8.11	35.28	5.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
122	123	7.347508	TCAGCAACTTTATTTAGACGAGAAC	57.652	36.000	0.00	0.00	0.00	3.01
125	126	9.267096	GAAAATCAGCAACTTTATTTAGACGAG	57.733	33.333	0.00	0.00	0.00	4.18
249	256	4.081476	GGCCAAGCAATAAAATCTTCCTGT	60.081	41.667	0.00	0.00	0.00	4.00
251	258	4.356436	AGGCCAAGCAATAAAATCTTCCT	58.644	39.130	5.01	0.00	0.00	3.36
287	294	3.003480	GCGCTCCTAACTGTGAAAGATT	58.997	45.455	0.00	0.00	0.00	2.40
325	332	0.108585	AAACGGTCCATGTGCTCACT	59.891	50.000	1.47	0.00	0.00	3.41
362	369	1.135960	TTCACCACCAGGACATGTGA	58.864	50.000	1.15	0.00	38.69	3.58
446	456	5.603170	TGCTAGTGTACCAGTAATTACCC	57.397	43.478	12.05	0.00	0.00	3.69
490	500	6.007485	TGTTGCCCTTATACCAATATGACA	57.993	37.500	0.00	0.00	0.00	3.58
503	513	1.102154	CATTCCGCATGTTGCCCTTA	58.898	50.000	0.00	0.00	41.12	2.69
678	688	1.496060	TATCCCGGACATTGCTCTGT	58.504	50.000	0.73	0.00	0.00	3.41
696	706	5.046087	CCTCCAGAGCACCATAATGATCATA	60.046	44.000	9.04	0.00	37.47	2.15
770	780	6.686378	GCATAGATAATCACAAGACACCTCCA	60.686	42.308	0.00	0.00	0.00	3.86
806	817	7.171678	CCATACTACCTAATTGTAGCAAAGAGC	59.828	40.741	3.48	0.00	41.57	4.09
825	836	3.104512	CACCTCTTCCACACCCATACTA	58.895	50.000	0.00	0.00	0.00	1.82
826	837	1.909302	CACCTCTTCCACACCCATACT	59.091	52.381	0.00	0.00	0.00	2.12
1107	1124	3.059884	TGACTGTTGAATTGCGAGACTC	58.940	45.455	0.00	0.00	0.00	3.36
1128	1145	3.678056	TGTAGCTGAACTGGTCGATTT	57.322	42.857	0.00	0.00	0.00	2.17
1447	1467	2.637383	GCACGAAGACTCCCCGACT	61.637	63.158	0.00	0.00	0.00	4.18
1449	1469	1.982395	ATGCACGAAGACTCCCCGA	60.982	57.895	0.00	0.00	0.00	5.14
1453	1473	2.109126	GGCCATGCACGAAGACTCC	61.109	63.158	0.00	0.00	0.00	3.85
1454	1474	2.109126	GGGCCATGCACGAAGACTC	61.109	63.158	4.39	0.00	0.00	3.36
1469	1489	4.858680	GCGCTGGTCCTTAGGGGC	62.859	72.222	0.00	0.00	36.26	5.80
1470	1490	4.176752	GGCGCTGGTCCTTAGGGG	62.177	72.222	7.64	0.00	0.00	4.79
1471	1491	4.176752	GGGCGCTGGTCCTTAGGG	62.177	72.222	7.64	0.00	34.09	3.53
1493	1514	2.780065	TCAACAATGACAACTGCAGC	57.220	45.000	15.27	0.00	0.00	5.25
1494	1515	4.022589	AGGATTCAACAATGACAACTGCAG	60.023	41.667	13.48	13.48	34.61	4.41
1495	1516	3.890756	AGGATTCAACAATGACAACTGCA	59.109	39.130	0.00	0.00	34.61	4.41
1496	1517	4.510038	AGGATTCAACAATGACAACTGC	57.490	40.909	0.00	0.00	34.61	4.40
1505	1526	7.829725	TCAAATCGATTCAAGGATTCAACAAT	58.170	30.769	11.83	0.00	31.95	2.71
1506	1527	7.213216	TCAAATCGATTCAAGGATTCAACAA	57.787	32.000	11.83	0.00	31.95	2.83
1508	1529	7.530010	TCTTCAAATCGATTCAAGGATTCAAC	58.470	34.615	21.22	0.00	31.95	3.18
1514	1535	5.560724	AGGTTCTTCAAATCGATTCAAGGA	58.439	37.500	21.22	14.65	0.00	3.36
1527	1548	5.411361	CGATATTTGGTGTGAGGTTCTTCAA	59.589	40.000	0.00	0.00	0.00	2.69
1564	1585	3.801698	AGGTTAGAGCTCATCGTACGTA	58.198	45.455	17.77	2.34	0.00	3.57
1568	1589	2.100916	GGCAAGGTTAGAGCTCATCGTA	59.899	50.000	17.77	0.00	0.00	3.43
1569	1590	1.134670	GGCAAGGTTAGAGCTCATCGT	60.135	52.381	17.77	4.45	0.00	3.73
1570	1591	1.576356	GGCAAGGTTAGAGCTCATCG	58.424	55.000	17.77	0.00	0.00	3.84
1571	1592	1.576356	CGGCAAGGTTAGAGCTCATC	58.424	55.000	17.77	5.40	0.00	2.92
1572	1593	0.462759	GCGGCAAGGTTAGAGCTCAT	60.463	55.000	17.77	3.63	0.00	2.90
1573	1594	1.079127	GCGGCAAGGTTAGAGCTCA	60.079	57.895	17.77	0.00	0.00	4.26
1574	1595	1.815840	GGCGGCAAGGTTAGAGCTC	60.816	63.158	5.27	5.27	0.00	4.09
1576	1597	2.824489	GGGCGGCAAGGTTAGAGC	60.824	66.667	12.47	0.00	0.00	4.09
1578	1599	4.090588	CGGGGCGGCAAGGTTAGA	62.091	66.667	12.47	0.00	0.00	2.10
1599	1620	2.436646	CGTTGATTCCTGCCGGCT	60.437	61.111	29.70	6.37	0.00	5.52
1602	1623	0.871722	TTCAACGTTGATTCCTGCCG	59.128	50.000	30.10	0.00	37.00	5.69
1607	1628	2.808543	ACAGAGCTTCAACGTTGATTCC	59.191	45.455	30.10	20.13	37.00	3.01
1611	1632	2.890808	AGACAGAGCTTCAACGTTGA	57.109	45.000	26.53	26.53	34.92	3.18
1620	1641	3.445008	TGGGACAGATTAGACAGAGCTT	58.555	45.455	0.00	0.00	0.00	3.74
1643	1664	5.935945	TCTAATCCTCATAAAATTCGCCCA	58.064	37.500	0.00	0.00	0.00	5.36
1646	1667	5.703130	AGGCTCTAATCCTCATAAAATTCGC	59.297	40.000	0.00	0.00	0.00	4.70
1656	1677	3.034635	GTCTTCCAGGCTCTAATCCTCA	58.965	50.000	0.00	0.00	0.00	3.86
1663	1684	2.041755	TGAGTCAGTCTTCCAGGCTCTA	59.958	50.000	0.00	0.00	0.00	2.43
1684	1705	1.388837	AAGGGCGGCGTTTGTTCTTT	61.389	50.000	11.48	0.00	0.00	2.52
1702	1723	7.990886	AGATACATAGGGTTTTAATTCTCGCAA	59.009	33.333	0.00	0.00	0.00	4.85
1722	1743	7.119407	GTGCATCGGATCTAACTAGTAGATACA	59.881	40.741	17.56	9.84	46.98	2.29
1734	1755	4.380531	GAATTCTGGTGCATCGGATCTAA	58.619	43.478	9.87	0.00	0.00	2.10
1735	1756	3.244215	GGAATTCTGGTGCATCGGATCTA	60.244	47.826	9.87	0.00	0.00	1.98
1781	1802	1.731700	CCTTCTATTCGCCCGTCGA	59.268	57.895	0.00	0.00	46.88	4.20
1791	1812	2.746472	GCCTGTGGATTCGCCTTCTATT	60.746	50.000	0.00	0.00	37.63	1.73
1793	1814	0.178068	GCCTGTGGATTCGCCTTCTA	59.822	55.000	0.00	0.00	37.63	2.10
1809	1830	1.078143	GATCTTCACCGGCAAGCCT	60.078	57.895	9.73	0.00	0.00	4.58
1857	1878	8.441089	AGAGCTTTTCTTTTCCTTCTAGAAGGC	61.441	40.741	37.09	24.14	44.71	4.35
1858	1879	6.939730	AGAGCTTTTCTTTTCCTTCTAGAAGG	59.060	38.462	36.48	36.48	45.63	3.46
1870	1891	2.952310	AGGCAACGAGAGCTTTTCTTTT	59.048	40.909	0.00	0.00	46.39	2.27
1936	1957	2.832643	TCATGGAGCAATTCCCACAT	57.167	45.000	0.00	0.00	46.19	3.21
2000	2024	6.831868	GGGCCATCTGTACTTAATTTAAAGGA	59.168	38.462	4.39	0.00	0.00	3.36
2023	2047	4.039609	GGGCTCAAAAATGGATATTCAGGG	59.960	45.833	0.00	0.00	0.00	4.45
2024	2048	4.650588	TGGGCTCAAAAATGGATATTCAGG	59.349	41.667	0.00	0.00	0.00	3.86
2026	2050	4.650588	CCTGGGCTCAAAAATGGATATTCA	59.349	41.667	0.00	0.00	0.00	2.57
2275	2302	6.669125	TTTCAGACCATTTGGACATTTGAT	57.331	33.333	3.01	0.00	38.94	2.57
2279	2306	7.065120	TCAAATTTCAGACCATTTGGACATT	57.935	32.000	3.01	0.00	39.76	2.71
2328	2355	7.008859	CGAATTCAATTTGTTTTGCATGGTAC	58.991	34.615	6.22	0.00	0.00	3.34
2350	2377	8.973835	ACAAACACTAGAAAAATTCAAACGAA	57.026	26.923	0.00	0.00	0.00	3.85
2370	2397	8.288217	TGCGGTGAAGATTATTTTAAACAAAC	57.712	30.769	0.00	0.00	0.00	2.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.