Multiple sequence alignment - TraesCS7A01G075600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G075600 chr7A 100.000 4852 0 0 1 4852 41443163 41438312 0.000000e+00 8961.0
1 TraesCS7A01G075600 chr7A 85.437 103 13 2 507 607 632382897 632382999 6.640000e-19 106.0
2 TraesCS7A01G075600 chr7D 84.808 3028 248 92 748 3686 41777592 41774688 0.000000e+00 2848.0
3 TraesCS7A01G075600 chr7D 91.309 1024 63 13 3716 4723 41774595 41773582 0.000000e+00 1375.0
4 TraesCS7A01G075600 chr7D 88.304 342 26 4 99 431 41778097 41777761 9.790000e-107 398.0
5 TraesCS7A01G075600 chr7D 98.261 115 2 0 4738 4852 41773377 41773263 8.230000e-48 202.0
6 TraesCS7A01G075600 chr7D 92.708 96 6 1 509 603 287721372 287721277 2.360000e-28 137.0
7 TraesCS7A01G075600 chr7D 85.000 100 11 4 511 607 602639026 602639124 1.110000e-16 99.0
8 TraesCS7A01G075600 chr4A 87.698 886 70 15 1513 2371 648896800 648895927 0.000000e+00 996.0
9 TraesCS7A01G075600 chr4A 88.020 818 48 23 4081 4852 648893801 648892988 0.000000e+00 922.0
10 TraesCS7A01G075600 chr4A 81.204 681 52 33 3036 3688 648895034 648894402 3.400000e-131 479.0
11 TraesCS7A01G075600 chr4A 89.147 387 37 5 2422 2805 648895722 648895338 1.220000e-130 477.0
12 TraesCS7A01G075600 chr4A 84.082 245 27 6 66 303 648898503 648898264 4.890000e-55 226.0
13 TraesCS7A01G075600 chr4A 87.640 89 11 0 507 595 503221573 503221661 2.390000e-18 104.0
14 TraesCS7A01G075600 chr4A 84.694 98 13 2 511 606 55431885 55431788 4.000000e-16 97.1
15 TraesCS7A01G075600 chr6D 97.701 87 2 0 509 595 226771639 226771553 3.030000e-32 150.0
16 TraesCS7A01G075600 chr6D 87.778 90 10 1 2627 2715 283456169 283456080 2.390000e-18 104.0
17 TraesCS7A01G075600 chr6D 92.754 69 4 1 1029 1097 244270022 244270089 1.110000e-16 99.0
18 TraesCS7A01G075600 chr5D 96.512 86 3 0 510 595 558893920 558893835 5.060000e-30 143.0
19 TraesCS7A01G075600 chr5D 88.636 88 10 0 2630 2717 12599665 12599752 1.850000e-19 108.0
20 TraesCS7A01G075600 chr5D 94.203 69 4 0 1029 1097 12596570 12596638 6.640000e-19 106.0
21 TraesCS7A01G075600 chr5D 88.506 87 10 0 2630 2716 12926849 12926935 6.640000e-19 106.0
22 TraesCS7A01G075600 chr5A 96.512 86 3 0 510 595 535678519 535678434 5.060000e-30 143.0
23 TraesCS7A01G075600 chr5A 88.636 88 10 0 2630 2717 9658368 9658455 1.850000e-19 108.0
24 TraesCS7A01G075600 chr5A 88.506 87 10 0 2630 2716 9833596 9833682 6.640000e-19 106.0
25 TraesCS7A01G075600 chr5A 95.312 64 3 0 1034 1097 9830619 9830682 8.590000e-18 102.0
26 TraesCS7A01G075600 chr2D 96.552 87 2 1 511 596 358589243 358589157 5.060000e-30 143.0
27 TraesCS7A01G075600 chr2D 92.754 69 4 1 1029 1097 40769721 40769788 1.110000e-16 99.0
28 TraesCS7A01G075600 chr2D 93.939 66 3 1 1032 1097 302876095 302876031 1.110000e-16 99.0
29 TraesCS7A01G075600 chr1B 95.506 89 4 0 508 596 47517343 47517431 5.060000e-30 143.0
30 TraesCS7A01G075600 chr3B 93.617 94 6 0 503 596 173097729 173097636 1.820000e-29 141.0
31 TraesCS7A01G075600 chr4D 94.382 89 5 0 508 596 371792532 371792620 2.360000e-28 137.0
32 TraesCS7A01G075600 chr4D 90.099 101 8 2 510 609 436376802 436376703 3.940000e-26 130.0
33 TraesCS7A01G075600 chr4D 92.754 69 4 1 1029 1097 228949109 228949176 1.110000e-16 99.0
34 TraesCS7A01G075600 chr3D 89.623 106 8 3 506 608 68251649 68251754 1.100000e-26 132.0
35 TraesCS7A01G075600 chr2B 89.888 89 9 0 507 595 122965 123053 1.100000e-21 115.0
36 TraesCS7A01G075600 chr5B 89.535 86 9 0 2630 2715 12325883 12325798 5.130000e-20 110.0
37 TraesCS7A01G075600 chr5B 95.455 66 3 0 1032 1097 12265159 12265094 6.640000e-19 106.0
38 TraesCS7A01G075600 chr5B 95.455 66 3 0 1032 1097 12328609 12328544 6.640000e-19 106.0
39 TraesCS7A01G075600 chr5B 87.500 88 11 0 2630 2717 12262102 12262015 8.590000e-18 102.0
40 TraesCS7A01G075600 chr2A 84.906 106 11 4 511 615 125202192 125202293 8.590000e-18 102.0
41 TraesCS7A01G075600 chr2A 86.517 89 12 0 507 595 779470085 779470173 1.110000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G075600 chr7A 41438312 41443163 4851 True 8961.00 8961 100.0000 1 4852 1 chr7A.!!$R1 4851
1 TraesCS7A01G075600 chr7D 41773263 41778097 4834 True 1205.75 2848 90.6705 99 4852 4 chr7D.!!$R2 4753
2 TraesCS7A01G075600 chr4A 648892988 648898503 5515 True 620.00 996 86.0302 66 4852 5 chr4A.!!$R2 4786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.099082 GAGGAAGTCGTAGTCAGCCG 59.901 60.0 0.00 0.00 0.00 5.52 F
707 1244 0.105913 ACCTGCCGGGGAAAGAAAAA 60.106 50.0 2.18 0.00 40.03 1.94 F
1110 1767 0.397254 AGGTACCCAGACCGATCCAG 60.397 60.0 8.74 0.00 44.88 3.86 F
1386 2080 1.017387 CTGATTACCTCGGCAAAGGC 58.983 55.0 3.62 0.00 40.34 4.35 F
2393 3134 0.036164 ACATACGTTTCCCTGCTGCA 59.964 50.0 0.88 0.88 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 2203 0.179000 ATTCAGAGATGGCACGGTCC 59.821 55.0 0.00 0.0 0.00 4.46 R
2377 3118 0.107831 ACTTGCAGCAGGGAAACGTA 59.892 50.0 9.68 0.0 0.00 3.57 R
2378 3119 0.107831 TACTTGCAGCAGGGAAACGT 59.892 50.0 9.68 0.0 0.00 3.99 R
3281 4259 0.387202 CTGTCACCGAGCCTATCTGG 59.613 60.0 0.00 0.0 39.35 3.86 R
4164 5630 0.321034 TGCAAGCAGAGTAGGCACTG 60.321 55.0 0.00 0.0 41.52 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.802866 CCTTTAGCCAGGAGAGATGAAC 58.197 50.000 0.00 0.00 35.71 3.18
22 23 3.452474 CTTTAGCCAGGAGAGATGAACG 58.548 50.000 0.00 0.00 0.00 3.95
23 24 1.403814 TAGCCAGGAGAGATGAACGG 58.596 55.000 0.00 0.00 0.00 4.44
24 25 1.144936 GCCAGGAGAGATGAACGGG 59.855 63.158 0.00 0.00 0.00 5.28
25 26 1.330655 GCCAGGAGAGATGAACGGGA 61.331 60.000 0.00 0.00 0.00 5.14
26 27 1.195115 CCAGGAGAGATGAACGGGAA 58.805 55.000 0.00 0.00 0.00 3.97
27 28 1.555075 CCAGGAGAGATGAACGGGAAA 59.445 52.381 0.00 0.00 0.00 3.13
28 29 2.622436 CAGGAGAGATGAACGGGAAAC 58.378 52.381 0.00 0.00 0.00 2.78
29 30 2.028112 CAGGAGAGATGAACGGGAAACA 60.028 50.000 0.00 0.00 0.00 2.83
30 31 2.637872 AGGAGAGATGAACGGGAAACAA 59.362 45.455 0.00 0.00 0.00 2.83
31 32 3.072476 AGGAGAGATGAACGGGAAACAAA 59.928 43.478 0.00 0.00 0.00 2.83
32 33 4.010349 GGAGAGATGAACGGGAAACAAAT 58.990 43.478 0.00 0.00 0.00 2.32
33 34 4.459337 GGAGAGATGAACGGGAAACAAATT 59.541 41.667 0.00 0.00 0.00 1.82
34 35 5.048013 GGAGAGATGAACGGGAAACAAATTT 60.048 40.000 0.00 0.00 0.00 1.82
35 36 6.405278 AGAGATGAACGGGAAACAAATTTT 57.595 33.333 0.00 0.00 0.00 1.82
36 37 6.447162 AGAGATGAACGGGAAACAAATTTTC 58.553 36.000 0.00 0.00 0.00 2.29
37 38 5.219633 AGATGAACGGGAAACAAATTTTCG 58.780 37.500 0.00 0.00 33.67 3.46
38 39 4.634184 TGAACGGGAAACAAATTTTCGA 57.366 36.364 0.00 0.00 32.59 3.71
39 40 4.352887 TGAACGGGAAACAAATTTTCGAC 58.647 39.130 0.00 0.00 32.59 4.20
40 41 2.989641 ACGGGAAACAAATTTTCGACG 58.010 42.857 9.48 9.48 36.36 5.12
41 42 2.287129 ACGGGAAACAAATTTTCGACGG 60.287 45.455 13.38 0.89 35.38 4.79
42 43 2.055838 GGGAAACAAATTTTCGACGGC 58.944 47.619 0.00 0.00 0.00 5.68
43 44 2.544069 GGGAAACAAATTTTCGACGGCA 60.544 45.455 0.00 0.00 0.00 5.69
44 45 2.724174 GGAAACAAATTTTCGACGGCAG 59.276 45.455 0.00 0.00 0.00 4.85
45 46 3.368495 GAAACAAATTTTCGACGGCAGT 58.632 40.909 0.00 0.00 0.00 4.40
46 47 4.529446 GAAACAAATTTTCGACGGCAGTA 58.471 39.130 0.00 0.00 0.00 2.74
47 48 3.806316 ACAAATTTTCGACGGCAGTAG 57.194 42.857 0.00 0.00 0.00 2.57
48 49 3.395639 ACAAATTTTCGACGGCAGTAGA 58.604 40.909 0.00 0.00 0.00 2.59
49 50 3.810941 ACAAATTTTCGACGGCAGTAGAA 59.189 39.130 8.34 8.34 39.61 2.10
50 51 4.273969 ACAAATTTTCGACGGCAGTAGAAA 59.726 37.500 18.26 18.26 45.62 2.52
55 56 4.707030 TTCGACGGCAGTAGAAAATAGA 57.293 40.909 9.86 0.00 38.67 1.98
56 57 4.288670 TCGACGGCAGTAGAAAATAGAG 57.711 45.455 0.00 0.00 0.00 2.43
57 58 3.066342 TCGACGGCAGTAGAAAATAGAGG 59.934 47.826 0.00 0.00 0.00 3.69
58 59 3.066342 CGACGGCAGTAGAAAATAGAGGA 59.934 47.826 0.00 0.00 0.00 3.71
59 60 4.439700 CGACGGCAGTAGAAAATAGAGGAA 60.440 45.833 0.00 0.00 0.00 3.36
60 61 5.012328 ACGGCAGTAGAAAATAGAGGAAG 57.988 43.478 0.00 0.00 0.00 3.46
61 62 4.466726 ACGGCAGTAGAAAATAGAGGAAGT 59.533 41.667 0.00 0.00 0.00 3.01
62 63 5.044558 CGGCAGTAGAAAATAGAGGAAGTC 58.955 45.833 0.00 0.00 0.00 3.01
63 64 5.044558 GGCAGTAGAAAATAGAGGAAGTCG 58.955 45.833 0.00 0.00 0.00 4.18
64 65 5.394333 GGCAGTAGAAAATAGAGGAAGTCGT 60.394 44.000 0.00 0.00 0.00 4.34
65 66 6.183360 GGCAGTAGAAAATAGAGGAAGTCGTA 60.183 42.308 0.00 0.00 0.00 3.43
66 67 6.913673 GCAGTAGAAAATAGAGGAAGTCGTAG 59.086 42.308 0.00 0.00 0.00 3.51
67 68 7.415429 GCAGTAGAAAATAGAGGAAGTCGTAGT 60.415 40.741 0.00 0.00 0.00 2.73
68 69 8.124199 CAGTAGAAAATAGAGGAAGTCGTAGTC 58.876 40.741 0.00 0.00 0.00 2.59
69 70 7.828223 AGTAGAAAATAGAGGAAGTCGTAGTCA 59.172 37.037 0.00 0.00 0.00 3.41
70 71 7.090953 AGAAAATAGAGGAAGTCGTAGTCAG 57.909 40.000 0.00 0.00 0.00 3.51
71 72 4.904253 AATAGAGGAAGTCGTAGTCAGC 57.096 45.455 0.00 0.00 0.00 4.26
72 73 1.465794 AGAGGAAGTCGTAGTCAGCC 58.534 55.000 0.00 0.00 0.00 4.85
73 74 0.099082 GAGGAAGTCGTAGTCAGCCG 59.901 60.000 0.00 0.00 0.00 5.52
74 75 0.322277 AGGAAGTCGTAGTCAGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
75 76 0.739561 GGAAGTCGTAGTCAGCCGAT 59.260 55.000 0.00 0.00 35.30 4.18
76 77 1.534175 GGAAGTCGTAGTCAGCCGATG 60.534 57.143 0.00 0.00 35.30 3.84
77 78 0.179134 AAGTCGTAGTCAGCCGATGC 60.179 55.000 0.00 0.00 35.30 3.91
78 79 1.138883 GTCGTAGTCAGCCGATGCA 59.861 57.895 0.00 0.00 41.13 3.96
79 80 0.249073 GTCGTAGTCAGCCGATGCAT 60.249 55.000 0.00 0.00 41.13 3.96
80 81 0.249031 TCGTAGTCAGCCGATGCATG 60.249 55.000 2.46 0.00 41.13 4.06
97 98 1.553690 ATGTCTGTCCGGACCAAGGG 61.554 60.000 31.19 15.53 35.54 3.95
127 128 2.420890 CCCTGCGATGAGAGGAGC 59.579 66.667 0.00 0.00 0.00 4.70
211 214 1.061485 GCAGACGAGTCGAAGTTTCC 58.939 55.000 21.50 0.00 34.09 3.13
212 215 1.602165 GCAGACGAGTCGAAGTTTCCA 60.602 52.381 21.50 0.00 34.09 3.53
225 228 0.171231 GTTTCCATTGGCCTCGCTTC 59.829 55.000 3.32 0.00 0.00 3.86
231 234 1.528586 CATTGGCCTCGCTTCGATTAG 59.471 52.381 3.32 0.00 34.61 1.73
244 247 4.367450 CTTCGATTAGCTTCCAAGAGGAG 58.633 47.826 0.00 0.00 46.74 3.69
248 251 4.202202 CGATTAGCTTCCAAGAGGAGTGAT 60.202 45.833 0.00 0.00 46.74 3.06
270 278 1.349688 TGCCTAACCTAACCACAGTGG 59.650 52.381 18.93 18.93 45.02 4.00
300 312 1.135859 GCTGAAAAGTCCACGCATCTG 60.136 52.381 0.00 0.00 0.00 2.90
306 318 0.109086 AGTCCACGCATCTGAAGACG 60.109 55.000 0.00 0.00 0.00 4.18
325 454 4.938226 AGACGACATTTTCTTCCATCCTTC 59.062 41.667 0.00 0.00 0.00 3.46
333 462 4.838152 TCCATCCTTCTGCGCCGC 62.838 66.667 4.18 0.00 0.00 6.53
363 492 7.416817 GGAAAACAAATTGAAGTCAAAATGGG 58.583 34.615 0.00 0.00 39.55 4.00
392 521 3.433274 TGAGCAGATTAACTTTCACGCTG 59.567 43.478 0.00 0.00 0.00 5.18
412 541 6.128007 ACGCTGTTTTTATTACTCCTTCCATG 60.128 38.462 0.00 0.00 0.00 3.66
413 542 6.036470 GCTGTTTTTATTACTCCTTCCATGC 58.964 40.000 0.00 0.00 0.00 4.06
414 543 6.350110 GCTGTTTTTATTACTCCTTCCATGCA 60.350 38.462 0.00 0.00 0.00 3.96
433 562 4.127907 TGCATCCACTTTTGTAACACGTA 58.872 39.130 0.00 0.00 0.00 3.57
434 563 4.024725 TGCATCCACTTTTGTAACACGTAC 60.025 41.667 0.00 0.00 0.00 3.67
436 565 5.334569 GCATCCACTTTTGTAACACGTACAT 60.335 40.000 0.00 0.00 42.37 2.29
437 566 5.660629 TCCACTTTTGTAACACGTACATG 57.339 39.130 0.00 0.00 42.37 3.21
439 568 5.234757 TCCACTTTTGTAACACGTACATGTC 59.765 40.000 0.00 0.00 42.37 3.06
440 569 5.235616 CCACTTTTGTAACACGTACATGTCT 59.764 40.000 0.00 0.00 42.37 3.41
441 570 6.421501 CCACTTTTGTAACACGTACATGTCTA 59.578 38.462 0.00 0.00 42.37 2.59
443 572 8.329583 CACTTTTGTAACACGTACATGTCTAAA 58.670 33.333 0.00 0.00 42.37 1.85
444 573 8.881743 ACTTTTGTAACACGTACATGTCTAAAA 58.118 29.630 0.00 3.48 42.37 1.52
445 574 9.150653 CTTTTGTAACACGTACATGTCTAAAAC 57.849 33.333 0.00 0.00 42.37 2.43
446 575 6.436944 TGTAACACGTACATGTCTAAAACG 57.563 37.500 14.79 14.79 37.81 3.60
447 576 5.976534 TGTAACACGTACATGTCTAAAACGT 59.023 36.000 15.98 15.98 46.72 3.99
448 577 5.565723 AACACGTACATGTCTAAAACGTC 57.434 39.130 18.23 0.00 44.23 4.34
449 578 4.863491 ACACGTACATGTCTAAAACGTCT 58.137 39.130 18.23 6.93 44.23 4.18
450 579 5.284079 ACACGTACATGTCTAAAACGTCTT 58.716 37.500 18.23 8.02 44.23 3.01
451 580 6.437928 ACACGTACATGTCTAAAACGTCTTA 58.562 36.000 18.23 0.00 44.23 2.10
452 581 6.360681 ACACGTACATGTCTAAAACGTCTTAC 59.639 38.462 18.23 0.00 44.23 2.34
454 583 6.917477 ACGTACATGTCTAAAACGTCTTACAA 59.083 34.615 15.98 0.00 42.62 2.41
455 584 7.434897 ACGTACATGTCTAAAACGTCTTACAAA 59.565 33.333 15.98 0.00 42.62 2.83
456 585 8.268052 CGTACATGTCTAAAACGTCTTACAAAA 58.732 33.333 0.00 0.00 0.00 2.44
457 586 9.577003 GTACATGTCTAAAACGTCTTACAAAAG 57.423 33.333 0.00 0.00 0.00 2.27
458 587 8.205131 ACATGTCTAAAACGTCTTACAAAAGT 57.795 30.769 0.00 0.00 34.13 2.66
459 588 8.120465 ACATGTCTAAAACGTCTTACAAAAGTG 58.880 33.333 0.00 0.00 34.13 3.16
460 589 7.830940 TGTCTAAAACGTCTTACAAAAGTGA 57.169 32.000 0.00 0.00 34.13 3.41
462 591 7.121911 GTCTAAAACGTCTTACAAAAGTGACC 58.878 38.462 0.00 0.00 34.13 4.02
463 592 7.010830 GTCTAAAACGTCTTACAAAAGTGACCT 59.989 37.037 0.00 0.00 34.13 3.85
464 593 5.729974 AAACGTCTTACAAAAGTGACCTC 57.270 39.130 0.00 0.00 34.13 3.85
490 994 3.752339 CGGGGCTGCTGCTTTTCC 61.752 66.667 15.64 7.73 39.59 3.13
492 996 2.985847 GGGCTGCTGCTTTTCCGT 60.986 61.111 15.64 0.00 39.59 4.69
518 1055 4.999751 CACTCTTGCAAAGTACTTCCTC 57.000 45.455 8.95 1.91 46.34 3.71
519 1056 3.748568 CACTCTTGCAAAGTACTTCCTCC 59.251 47.826 8.95 0.00 46.34 4.30
520 1057 2.996621 CTCTTGCAAAGTACTTCCTCCG 59.003 50.000 8.95 0.00 46.34 4.63
521 1058 2.367567 TCTTGCAAAGTACTTCCTCCGT 59.632 45.455 8.95 0.00 46.34 4.69
522 1059 3.575256 TCTTGCAAAGTACTTCCTCCGTA 59.425 43.478 8.95 0.00 46.34 4.02
523 1060 4.039488 TCTTGCAAAGTACTTCCTCCGTAA 59.961 41.667 8.95 1.30 46.34 3.18
524 1061 4.339872 TGCAAAGTACTTCCTCCGTAAA 57.660 40.909 8.95 0.00 0.00 2.01
525 1062 4.060205 TGCAAAGTACTTCCTCCGTAAAC 58.940 43.478 8.95 0.00 0.00 2.01
526 1063 4.202284 TGCAAAGTACTTCCTCCGTAAACT 60.202 41.667 8.95 0.00 0.00 2.66
527 1064 5.010922 TGCAAAGTACTTCCTCCGTAAACTA 59.989 40.000 8.95 0.00 0.00 2.24
528 1065 5.928264 GCAAAGTACTTCCTCCGTAAACTAA 59.072 40.000 8.95 0.00 0.00 2.24
529 1066 6.592994 GCAAAGTACTTCCTCCGTAAACTAAT 59.407 38.462 8.95 0.00 0.00 1.73
530 1067 7.761249 GCAAAGTACTTCCTCCGTAAACTAATA 59.239 37.037 8.95 0.00 0.00 0.98
531 1068 9.813446 CAAAGTACTTCCTCCGTAAACTAATAT 57.187 33.333 8.95 0.00 0.00 1.28
537 1074 9.322773 ACTTCCTCCGTAAACTAATATAAAAGC 57.677 33.333 0.00 0.00 0.00 3.51
538 1075 7.935338 TCCTCCGTAAACTAATATAAAAGCG 57.065 36.000 0.00 0.00 0.00 4.68
539 1076 7.491682 TCCTCCGTAAACTAATATAAAAGCGT 58.508 34.615 0.00 0.00 0.00 5.07
540 1077 7.981225 TCCTCCGTAAACTAATATAAAAGCGTT 59.019 33.333 0.00 0.00 0.00 4.84
541 1078 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
544 1081 9.853921 CCGTAAACTAATATAAAAGCGTTTAGG 57.146 33.333 10.55 5.47 32.76 2.69
549 1086 9.662947 AACTAATATAAAAGCGTTTAGGTCACT 57.337 29.630 10.55 0.00 32.76 3.41
557 1094 7.974482 AAAGCGTTTAGGTCACTATTTTAGT 57.026 32.000 0.00 0.00 40.28 2.24
558 1095 9.492973 AAAAGCGTTTAGGTCACTATTTTAGTA 57.507 29.630 0.00 0.00 37.23 1.82
559 1096 9.492973 AAAGCGTTTAGGTCACTATTTTAGTAA 57.507 29.630 0.00 0.00 37.23 2.24
560 1097 9.662947 AAGCGTTTAGGTCACTATTTTAGTAAT 57.337 29.630 0.00 0.00 37.23 1.89
561 1098 9.310716 AGCGTTTAGGTCACTATTTTAGTAATC 57.689 33.333 0.00 0.00 37.23 1.75
562 1099 9.310716 GCGTTTAGGTCACTATTTTAGTAATCT 57.689 33.333 0.00 0.00 37.23 2.40
568 1105 9.310716 AGGTCACTATTTTAGTAATCTAAACGC 57.689 33.333 0.74 0.00 43.20 4.84
569 1106 9.310716 GGTCACTATTTTAGTAATCTAAACGCT 57.689 33.333 0.74 0.00 43.20 5.07
589 1126 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
599 1136 4.195225 AGTTTACAGAGGAAGTAGCAGC 57.805 45.455 0.00 0.00 0.00 5.25
609 1146 3.777522 AGGAAGTAGCAGCAGAATTACCT 59.222 43.478 0.00 0.00 0.00 3.08
616 1153 3.503748 AGCAGCAGAATTACCTGTCAAAC 59.496 43.478 0.00 0.00 36.57 2.93
617 1154 3.503748 GCAGCAGAATTACCTGTCAAACT 59.496 43.478 0.00 0.00 36.57 2.66
640 1177 6.989169 ACTAAAGTGGTAGCAGAATCATCATC 59.011 38.462 0.00 0.00 0.00 2.92
641 1178 5.363562 AAGTGGTAGCAGAATCATCATCA 57.636 39.130 0.00 0.00 0.00 3.07
642 1179 5.563876 AGTGGTAGCAGAATCATCATCAT 57.436 39.130 0.00 0.00 0.00 2.45
654 1191 8.766151 CAGAATCATCATCATAGACTTGTTGAG 58.234 37.037 0.00 0.00 30.97 3.02
680 1217 1.136774 GAAAAGAATCCCGGCGTGC 59.863 57.895 6.01 0.00 0.00 5.34
693 1230 2.431260 CGTGCATGCCAAACCTGC 60.431 61.111 16.68 0.00 36.45 4.85
695 1232 3.682885 TGCATGCCAAACCTGCCG 61.683 61.111 16.68 0.00 35.02 5.69
702 1239 2.275380 CCAAACCTGCCGGGGAAAG 61.275 63.158 2.18 0.00 40.03 2.62
707 1244 0.105913 ACCTGCCGGGGAAAGAAAAA 60.106 50.000 2.18 0.00 40.03 1.94
768 1315 6.405842 GCCTAACTTAATTCCCAAGTCCATTG 60.406 42.308 0.00 0.00 35.19 2.82
770 1317 7.832187 CCTAACTTAATTCCCAAGTCCATTGTA 59.168 37.037 0.00 0.00 35.19 2.41
771 1318 7.462571 AACTTAATTCCCAAGTCCATTGTAC 57.537 36.000 0.00 0.00 35.19 2.90
901 1558 4.162690 GTAGCCAGGCCAGACCGG 62.163 72.222 8.22 0.00 46.52 5.28
940 1597 1.027357 CATACATGCAGCCAGGAACC 58.973 55.000 0.00 0.00 0.00 3.62
946 1603 2.328099 GCAGCCAGGAACCAACGAG 61.328 63.158 0.00 0.00 0.00 4.18
949 1606 1.896660 GCCAGGAACCAACGAGCAA 60.897 57.895 0.00 0.00 0.00 3.91
962 1619 1.411089 GAGCAAACACGTACGCGAG 59.589 57.895 15.93 8.33 42.00 5.03
978 1635 2.427506 GCGAGTCCAAGGTTTTGAGAT 58.572 47.619 0.00 0.00 36.36 2.75
979 1636 2.814336 GCGAGTCCAAGGTTTTGAGATT 59.186 45.455 0.00 0.00 36.36 2.40
980 1637 4.000988 GCGAGTCCAAGGTTTTGAGATTA 58.999 43.478 0.00 0.00 36.36 1.75
981 1638 4.093556 GCGAGTCCAAGGTTTTGAGATTAG 59.906 45.833 0.00 0.00 36.36 1.73
982 1639 4.093556 CGAGTCCAAGGTTTTGAGATTAGC 59.906 45.833 0.00 0.00 36.36 3.09
983 1640 5.248380 AGTCCAAGGTTTTGAGATTAGCT 57.752 39.130 0.00 0.00 36.36 3.32
984 1641 6.374417 AGTCCAAGGTTTTGAGATTAGCTA 57.626 37.500 0.00 0.00 36.36 3.32
985 1642 6.174049 AGTCCAAGGTTTTGAGATTAGCTAC 58.826 40.000 0.00 0.00 36.36 3.58
986 1643 6.013293 AGTCCAAGGTTTTGAGATTAGCTACT 60.013 38.462 0.00 0.00 36.36 2.57
987 1644 6.314152 GTCCAAGGTTTTGAGATTAGCTACTC 59.686 42.308 2.94 2.94 36.36 2.59
988 1645 6.013725 TCCAAGGTTTTGAGATTAGCTACTCA 60.014 38.462 13.04 11.17 40.66 3.41
1004 1661 0.763652 CTCAGCCTAGCATCCATGGT 59.236 55.000 12.58 0.00 41.93 3.55
1010 1667 3.772853 TAGCATCCATGGTGGCGGC 62.773 63.158 12.58 0.00 39.14 6.53
1012 1669 4.854924 CATCCATGGTGGCGGCGA 62.855 66.667 12.98 0.00 37.47 5.54
1013 1670 4.856801 ATCCATGGTGGCGGCGAC 62.857 66.667 12.98 9.31 37.47 5.19
1108 1765 1.453762 CGAGGTACCCAGACCGATCC 61.454 65.000 8.74 0.00 44.88 3.36
1110 1767 0.397254 AGGTACCCAGACCGATCCAG 60.397 60.000 8.74 0.00 44.88 3.86
1111 1768 1.442148 GTACCCAGACCGATCCAGC 59.558 63.158 0.00 0.00 0.00 4.85
1112 1769 2.125326 TACCCAGACCGATCCAGCG 61.125 63.158 0.00 0.00 0.00 5.18
1146 1803 3.397955 ACCCCCTATTTGTTCTGTTCTGT 59.602 43.478 0.00 0.00 0.00 3.41
1147 1804 4.141018 ACCCCCTATTTGTTCTGTTCTGTT 60.141 41.667 0.00 0.00 0.00 3.16
1148 1805 4.218417 CCCCCTATTTGTTCTGTTCTGTTG 59.782 45.833 0.00 0.00 0.00 3.33
1156 1813 5.991328 TGTTCTGTTCTGTTGATCTGTTC 57.009 39.130 0.00 0.00 0.00 3.18
1163 1820 7.600375 TCTGTTCTGTTGATCTGTTCTGAATAC 59.400 37.037 0.00 0.00 0.00 1.89
1166 1823 7.153217 TCTGTTGATCTGTTCTGAATACGTA 57.847 36.000 0.00 0.00 0.00 3.57
1194 1868 4.249661 GTTTCTCTGAATCTCAGGTGGAC 58.750 47.826 3.92 0.00 44.39 4.02
1270 1952 3.391382 GTACGCACCCTGCCTCCT 61.391 66.667 0.00 0.00 41.12 3.69
1291 1973 1.803289 GTTCCGCCATGGCTTCTTC 59.197 57.895 33.07 15.97 39.32 2.87
1292 1974 1.745115 TTCCGCCATGGCTTCTTCG 60.745 57.895 33.07 16.90 39.32 3.79
1293 1975 3.204827 CCGCCATGGCTTCTTCGG 61.205 66.667 33.07 21.86 39.32 4.30
1294 1976 3.204827 CGCCATGGCTTCTTCGGG 61.205 66.667 33.07 12.26 39.32 5.14
1295 1977 2.830370 GCCATGGCTTCTTCGGGG 60.830 66.667 29.98 0.00 38.26 5.73
1296 1978 2.677228 CCATGGCTTCTTCGGGGT 59.323 61.111 0.00 0.00 0.00 4.95
1297 1979 1.750399 CCATGGCTTCTTCGGGGTG 60.750 63.158 0.00 0.00 0.00 4.61
1309 1991 1.310904 TCGGGGTGTTGTAACTTTGC 58.689 50.000 0.00 0.00 0.00 3.68
1318 2000 3.625764 TGTTGTAACTTTGCTCGCTTTCT 59.374 39.130 0.00 0.00 0.00 2.52
1324 2006 2.945668 ACTTTGCTCGCTTTCTTCAACT 59.054 40.909 0.00 0.00 0.00 3.16
1325 2007 4.127171 ACTTTGCTCGCTTTCTTCAACTA 58.873 39.130 0.00 0.00 0.00 2.24
1326 2008 4.574828 ACTTTGCTCGCTTTCTTCAACTAA 59.425 37.500 0.00 0.00 0.00 2.24
1327 2009 5.239525 ACTTTGCTCGCTTTCTTCAACTAAT 59.760 36.000 0.00 0.00 0.00 1.73
1345 2039 2.390225 ATCAGGAATCTACGAGGCCT 57.610 50.000 3.86 3.86 0.00 5.19
1386 2080 1.017387 CTGATTACCTCGGCAAAGGC 58.983 55.000 3.62 0.00 40.34 4.35
1400 2094 2.125766 AAAGGCGTCCTCAAGGTCCC 62.126 60.000 0.00 0.00 36.34 4.46
1425 2125 2.915869 TCACCACCTACCAATCCTTCT 58.084 47.619 0.00 0.00 0.00 2.85
1431 2131 5.131142 ACCACCTACCAATCCTTCTAATCTG 59.869 44.000 0.00 0.00 0.00 2.90
1432 2132 5.059833 CACCTACCAATCCTTCTAATCTGC 58.940 45.833 0.00 0.00 0.00 4.26
1433 2133 4.202264 ACCTACCAATCCTTCTAATCTGCG 60.202 45.833 0.00 0.00 0.00 5.18
1434 2134 4.039245 CCTACCAATCCTTCTAATCTGCGA 59.961 45.833 0.00 0.00 0.00 5.10
1435 2135 4.065321 ACCAATCCTTCTAATCTGCGAG 57.935 45.455 0.00 0.00 0.00 5.03
1437 2137 4.649674 ACCAATCCTTCTAATCTGCGAGTA 59.350 41.667 0.00 0.00 0.00 2.59
1439 2139 5.221342 CCAATCCTTCTAATCTGCGAGTACT 60.221 44.000 0.00 0.00 0.00 2.73
1440 2140 4.902443 TCCTTCTAATCTGCGAGTACTG 57.098 45.455 0.00 0.00 0.00 2.74
1441 2141 4.270834 TCCTTCTAATCTGCGAGTACTGT 58.729 43.478 0.00 0.00 0.00 3.55
1443 2143 6.062749 TCCTTCTAATCTGCGAGTACTGTAT 58.937 40.000 0.00 0.00 0.00 2.29
1444 2144 7.222161 TCCTTCTAATCTGCGAGTACTGTATA 58.778 38.462 0.00 0.00 0.00 1.47
1445 2145 7.388224 TCCTTCTAATCTGCGAGTACTGTATAG 59.612 40.741 0.00 0.00 0.00 1.31
1447 2147 8.850007 TTCTAATCTGCGAGTACTGTATAGAT 57.150 34.615 0.00 1.49 0.00 1.98
1448 2148 8.257830 TCTAATCTGCGAGTACTGTATAGATG 57.742 38.462 0.00 0.00 0.00 2.90
1449 2149 8.095169 TCTAATCTGCGAGTACTGTATAGATGA 58.905 37.037 0.00 0.00 0.00 2.92
1450 2150 6.735678 ATCTGCGAGTACTGTATAGATGAG 57.264 41.667 0.00 0.00 0.00 2.90
1451 2151 4.998033 TCTGCGAGTACTGTATAGATGAGG 59.002 45.833 0.00 0.00 0.00 3.86
1452 2152 4.969484 TGCGAGTACTGTATAGATGAGGA 58.031 43.478 0.00 0.00 0.00 3.71
1453 2153 5.374071 TGCGAGTACTGTATAGATGAGGAA 58.626 41.667 0.00 0.00 0.00 3.36
1454 2154 6.004574 TGCGAGTACTGTATAGATGAGGAAT 58.995 40.000 0.00 0.00 0.00 3.01
1455 2155 6.490381 TGCGAGTACTGTATAGATGAGGAATT 59.510 38.462 0.00 0.00 0.00 2.17
1456 2156 7.664318 TGCGAGTACTGTATAGATGAGGAATTA 59.336 37.037 0.00 0.00 0.00 1.40
1457 2157 8.512956 GCGAGTACTGTATAGATGAGGAATTAA 58.487 37.037 0.00 0.00 0.00 1.40
1458 2158 9.828852 CGAGTACTGTATAGATGAGGAATTAAC 57.171 37.037 0.00 0.00 0.00 2.01
1470 2170 9.829507 AGATGAGGAATTAACTAAGATCAACTG 57.170 33.333 0.00 0.00 0.00 3.16
1471 2171 7.849804 TGAGGAATTAACTAAGATCAACTGC 57.150 36.000 0.00 0.00 0.00 4.40
1472 2172 7.394016 TGAGGAATTAACTAAGATCAACTGCA 58.606 34.615 0.00 0.00 0.00 4.41
1473 2173 8.049117 TGAGGAATTAACTAAGATCAACTGCAT 58.951 33.333 0.00 0.00 0.00 3.96
1491 2191 5.652452 ACTGCATATATATACTGGAGCGACA 59.348 40.000 16.37 0.00 32.22 4.35
1497 2197 4.775058 ATATACTGGAGCGACACTGATC 57.225 45.455 0.00 0.00 0.00 2.92
1502 2202 1.226717 GAGCGACACTGATCGGACC 60.227 63.158 9.00 0.00 42.49 4.46
1503 2203 2.579787 GCGACACTGATCGGACCG 60.580 66.667 7.84 7.84 42.49 4.79
1504 2204 2.102357 CGACACTGATCGGACCGG 59.898 66.667 15.25 0.00 38.47 5.28
1505 2205 2.404186 CGACACTGATCGGACCGGA 61.404 63.158 15.25 0.81 38.47 5.14
1506 2206 1.139095 GACACTGATCGGACCGGAC 59.861 63.158 15.25 0.00 0.00 4.79
1578 2278 2.423446 GCGCTGATCGGGAAGGAT 59.577 61.111 0.00 0.00 38.94 3.24
1593 2293 2.122167 GGATCCGACCGAGCAGACT 61.122 63.158 0.00 0.00 0.00 3.24
1666 2366 1.266989 GCTGGTGCAAACAGAAGGTAC 59.733 52.381 20.40 1.54 38.20 3.34
1670 2372 4.069304 TGGTGCAAACAGAAGGTACATAC 58.931 43.478 0.00 0.00 0.00 2.39
1701 2403 6.381994 TCCAACGACTATTTATACCTCACCTT 59.618 38.462 0.00 0.00 0.00 3.50
1707 2409 7.063934 ACTATTTATACCTCACCTTGGCTAC 57.936 40.000 0.00 0.00 0.00 3.58
1727 2443 6.265649 GGCTACTTCCACTCTTCATACTGATA 59.734 42.308 0.00 0.00 0.00 2.15
1753 2469 6.773976 AATTTCCTTTCTTTGGATGCGATA 57.226 33.333 0.00 0.00 33.09 2.92
1779 2495 2.750237 GGGGCAAACGCGATCCTT 60.750 61.111 15.93 0.00 0.00 3.36
1780 2496 2.485122 GGGCAAACGCGATCCTTG 59.515 61.111 15.93 11.64 0.00 3.61
1781 2497 2.202479 GGCAAACGCGATCCTTGC 60.202 61.111 15.93 20.36 43.75 4.01
1788 2504 3.554692 GCGATCCTTGCGGTGTCG 61.555 66.667 0.00 0.00 40.16 4.35
1843 2571 3.491766 AGATCCCTCTTTACCAGGTCA 57.508 47.619 0.00 0.00 0.00 4.02
1853 2581 5.686753 TCTTTACCAGGTCAGCAAAAACTA 58.313 37.500 0.00 0.00 0.00 2.24
1867 2595 5.067283 AGCAAAAACTAAACCACCTACACAG 59.933 40.000 0.00 0.00 0.00 3.66
1905 2635 5.133941 TGCTAGAGGATGTAGTACTGAAGG 58.866 45.833 5.39 0.00 33.88 3.46
1913 2646 6.935771 AGGATGTAGTACTGAAGGTAGTATCG 59.064 42.308 5.39 0.00 38.24 2.92
1915 2648 7.228308 GGATGTAGTACTGAAGGTAGTATCGTT 59.772 40.741 5.39 0.00 38.24 3.85
1918 2651 5.648572 AGTACTGAAGGTAGTATCGTTTGC 58.351 41.667 0.00 0.00 35.75 3.68
1942 2675 3.404978 GCACATTGCGAATCTTGCA 57.595 47.368 0.00 0.00 41.38 4.08
1990 2723 3.512329 TGCCTGCTTTCAATGTGATCAAT 59.488 39.130 0.00 0.00 0.00 2.57
2005 2738 1.220206 CAATGGAGGCTCTCACGCT 59.780 57.895 15.23 0.00 31.08 5.07
2017 2750 1.572085 CTCACGCTGGGAACAAGCTG 61.572 60.000 0.00 0.00 42.06 4.24
2117 2858 9.423061 TGATGATTCTCATATAATTGGTGTACG 57.577 33.333 0.00 0.00 37.20 3.67
2118 2859 9.424319 GATGATTCTCATATAATTGGTGTACGT 57.576 33.333 0.00 0.00 37.20 3.57
2119 2860 9.778741 ATGATTCTCATATAATTGGTGTACGTT 57.221 29.630 0.00 0.00 34.88 3.99
2231 2972 5.047802 AGCACAACATCTAACCCTTTTGATG 60.048 40.000 7.11 7.11 45.30 3.07
2264 3005 6.489700 TGAACTTCAGAAAATATGCAGTTGGA 59.510 34.615 0.00 0.00 34.87 3.53
2278 3019 3.829948 CAGTTGGAATGAATGCTGACAC 58.170 45.455 0.00 0.00 0.00 3.67
2315 3056 7.281774 CAGAGCATAATCAACAAGAAGTATGGT 59.718 37.037 0.00 0.00 39.62 3.55
2318 3059 7.281774 AGCATAATCAACAAGAAGTATGGTCAG 59.718 37.037 0.00 0.00 35.68 3.51
2321 3062 5.762179 TCAACAAGAAGTATGGTCAGGAT 57.238 39.130 0.00 0.00 0.00 3.24
2354 3095 1.508088 GGATGAAGGTGGCTTTGCG 59.492 57.895 0.00 0.00 0.00 4.85
2372 3113 3.006940 TGCGCCTAACATTCAGGTAAAG 58.993 45.455 4.18 0.00 35.45 1.85
2377 3118 4.399303 GCCTAACATTCAGGTAAAGCACAT 59.601 41.667 0.00 0.00 35.45 3.21
2378 3119 5.588648 GCCTAACATTCAGGTAAAGCACATA 59.411 40.000 0.00 0.00 35.45 2.29
2380 3121 5.545658 AACATTCAGGTAAAGCACATACG 57.454 39.130 0.00 0.00 0.00 3.06
2384 3125 5.600908 TTCAGGTAAAGCACATACGTTTC 57.399 39.130 0.00 0.00 0.00 2.78
2385 3126 3.998341 TCAGGTAAAGCACATACGTTTCC 59.002 43.478 0.00 0.00 0.00 3.13
2388 3129 3.126343 GGTAAAGCACATACGTTTCCCTG 59.874 47.826 0.00 0.00 0.00 4.45
2389 3130 1.165270 AAGCACATACGTTTCCCTGC 58.835 50.000 0.00 0.00 0.00 4.85
2390 3131 0.324943 AGCACATACGTTTCCCTGCT 59.675 50.000 0.00 0.00 0.00 4.24
2391 3132 0.447801 GCACATACGTTTCCCTGCTG 59.552 55.000 0.00 0.00 0.00 4.41
2393 3134 0.036164 ACATACGTTTCCCTGCTGCA 59.964 50.000 0.88 0.88 0.00 4.41
2398 3285 1.271379 ACGTTTCCCTGCTGCAAGTAT 60.271 47.619 3.02 0.00 35.30 2.12
2406 3293 3.758554 CCCTGCTGCAAGTATAACAAGTT 59.241 43.478 3.02 0.00 35.30 2.66
2409 3296 5.356882 TGCTGCAAGTATAACAAGTTGTC 57.643 39.130 9.40 0.00 35.30 3.18
2410 3297 5.063204 TGCTGCAAGTATAACAAGTTGTCT 58.937 37.500 9.40 2.67 35.30 3.41
2411 3298 5.179368 TGCTGCAAGTATAACAAGTTGTCTC 59.821 40.000 9.40 0.75 35.30 3.36
2412 3299 5.179368 GCTGCAAGTATAACAAGTTGTCTCA 59.821 40.000 9.40 0.00 35.30 3.27
2415 3302 6.765989 TGCAAGTATAACAAGTTGTCTCAACT 59.234 34.615 9.40 9.00 33.21 3.16
2416 3303 7.282224 TGCAAGTATAACAAGTTGTCTCAACTT 59.718 33.333 18.26 18.26 40.80 2.66
2417 3304 8.770828 GCAAGTATAACAAGTTGTCTCAACTTA 58.229 33.333 21.83 11.40 38.32 2.24
2420 3315 9.998106 AGTATAACAAGTTGTCTCAACTTATGT 57.002 29.630 21.83 16.53 38.32 2.29
2448 3343 2.083774 GATGAATCCAAGTGCCGACAA 58.916 47.619 0.00 0.00 0.00 3.18
2451 3346 1.880027 GAATCCAAGTGCCGACAAACT 59.120 47.619 0.00 0.00 0.00 2.66
2452 3347 1.981256 ATCCAAGTGCCGACAAACTT 58.019 45.000 0.00 0.00 37.09 2.66
2503 3398 2.911926 AAGGAGGGCCTGGAACTGC 61.912 63.158 12.95 0.00 46.28 4.40
2573 3468 6.521151 AAAATCTCTTTGCTTAGGTCATGG 57.479 37.500 0.00 0.00 0.00 3.66
2597 3492 9.381033 TGGTTCAGCCATTTGATTTATTTATTG 57.619 29.630 0.00 0.00 43.61 1.90
2601 3496 8.881743 TCAGCCATTTGATTTATTTATTGTTGC 58.118 29.630 0.00 0.00 0.00 4.17
2633 3528 3.688694 TTTATCTACGTGTGGCAGGTT 57.311 42.857 0.00 0.00 34.30 3.50
2672 3567 4.277515 TGCTGCTTCTGAATTCTACAGT 57.722 40.909 7.05 0.00 36.81 3.55
2724 3619 6.387192 TCAAGGAGGATGTAAGATTTCCAA 57.613 37.500 0.00 0.00 31.65 3.53
2771 3666 0.684153 ACTGCCCTTTGTGCAACTGT 60.684 50.000 0.00 0.00 38.46 3.55
2826 3785 4.133078 GAGCAGGCTTAGCATATTGTCTT 58.867 43.478 6.53 0.00 0.00 3.01
2834 3793 7.941238 AGGCTTAGCATATTGTCTTAACATCAT 59.059 33.333 6.53 0.00 34.73 2.45
2863 3822 1.134907 ACTGAACAGAACAACGACGGT 60.135 47.619 8.87 0.00 0.00 4.83
2878 3837 2.500229 GACGGTTCCCACAAAATCTCA 58.500 47.619 0.00 0.00 0.00 3.27
2917 3876 2.483106 TCTGTACAAGTCCTTCGTCTCG 59.517 50.000 0.00 0.00 0.00 4.04
2941 3900 1.317431 ACCCCATCGTGTCGATCGAA 61.317 55.000 21.31 4.23 45.19 3.71
3055 4025 1.827344 ACTAACCCCACGGTAAGCTAC 59.173 52.381 0.00 0.00 43.71 3.58
3062 4032 4.842380 ACCCCACGGTAAGCTACATATTAT 59.158 41.667 0.00 0.00 42.18 1.28
3066 4036 6.295123 CCCACGGTAAGCTACATATTATCAGT 60.295 42.308 0.00 0.00 0.00 3.41
3090 4060 3.935818 TCACTGGGTTTACCACAGAAA 57.064 42.857 18.34 7.74 46.80 2.52
3093 4063 5.205056 TCACTGGGTTTACCACAGAAAAAT 58.795 37.500 18.34 0.55 46.80 1.82
3098 4068 8.364894 ACTGGGTTTACCACAGAAAAATATTTC 58.635 33.333 18.34 0.00 46.80 2.17
3218 4188 2.117051 TCTCTGCCTGAATCTGCTGAT 58.883 47.619 0.00 0.00 35.36 2.90
3281 4259 7.034685 AGTTGTTTATGGTAAACAGGTGAAC 57.965 36.000 13.14 9.52 40.70 3.18
3299 4277 0.324368 ACCAGATAGGCTCGGTGACA 60.324 55.000 0.00 0.00 43.14 3.58
3386 4364 5.723295 AGGTAATAAGCACTGCAAATTTGG 58.277 37.500 19.47 6.60 0.00 3.28
3410 4411 4.226113 TGCTTTTCAATTTGCATTTGCC 57.774 36.364 0.00 0.00 41.18 4.52
3443 4445 5.105797 TGTTTGCACTGAACATTCTTTCTGT 60.106 36.000 0.00 0.00 37.96 3.41
3444 4446 4.818534 TGCACTGAACATTCTTTCTGTC 57.181 40.909 0.00 0.00 35.99 3.51
3445 4447 4.198530 TGCACTGAACATTCTTTCTGTCA 58.801 39.130 0.00 0.00 35.99 3.58
3447 4449 5.300034 TGCACTGAACATTCTTTCTGTCATT 59.700 36.000 0.00 0.00 35.99 2.57
3474 4476 1.694696 GGTGAGACAGAGGACACCTTT 59.305 52.381 0.00 0.00 46.14 3.11
3532 4534 3.706373 GCCTTCGGCTGGACCAGA 61.706 66.667 26.25 1.13 46.69 3.86
3533 4535 2.581354 CCTTCGGCTGGACCAGAG 59.419 66.667 26.25 17.26 39.03 3.35
3534 4536 2.125350 CTTCGGCTGGACCAGAGC 60.125 66.667 26.25 11.58 39.03 4.09
3535 4537 2.604686 TTCGGCTGGACCAGAGCT 60.605 61.111 26.25 0.00 39.03 4.09
3536 4538 2.849120 CTTCGGCTGGACCAGAGCTG 62.849 65.000 26.25 16.40 43.19 4.24
3557 4559 3.181429 TGGACCAGAGCTTGAAATCCTTT 60.181 43.478 0.00 0.00 0.00 3.11
3658 4668 2.686835 GGAGCTCCCTGCAGGTCT 60.687 66.667 30.63 22.84 45.94 3.85
3688 4698 5.385198 CTGGCCAAATACAACCAGGTATAT 58.615 41.667 7.01 0.00 44.90 0.86
3690 4700 6.300703 TGGCCAAATACAACCAGGTATATAC 58.699 40.000 0.61 4.14 32.95 1.47
3693 4703 6.996282 GCCAAATACAACCAGGTATATACAGT 59.004 38.462 14.70 6.00 32.95 3.55
3698 4708 2.953453 ACCAGGTATATACAGTGGCGA 58.047 47.619 23.92 0.00 36.05 5.54
3704 4736 1.029681 ATATACAGTGGCGAGCGACA 58.970 50.000 12.43 0.79 0.00 4.35
3712 4744 1.589196 GGCGAGCGACACCATAGTC 60.589 63.158 0.00 0.00 35.19 2.59
3728 4808 4.275196 CCATAGTCATCTTTCCACATGCTG 59.725 45.833 0.00 0.00 0.00 4.41
3754 4834 3.117491 TCTGTGTTCTGAGGCTTCTTG 57.883 47.619 0.00 0.00 0.00 3.02
3755 4835 1.534595 CTGTGTTCTGAGGCTTCTTGC 59.465 52.381 0.00 0.00 41.94 4.01
3756 4836 1.141657 TGTGTTCTGAGGCTTCTTGCT 59.858 47.619 0.00 0.00 42.39 3.91
3763 4843 0.520847 GAGGCTTCTTGCTTGTGCTC 59.479 55.000 0.00 0.00 42.39 4.26
3859 4939 2.305927 TGGAGCCCTACTGAAAAGAAGG 59.694 50.000 0.00 0.00 0.00 3.46
3860 4940 2.572104 GGAGCCCTACTGAAAAGAAGGA 59.428 50.000 0.00 0.00 0.00 3.36
3862 4942 2.026729 AGCCCTACTGAAAAGAAGGAGC 60.027 50.000 0.00 0.00 0.00 4.70
3863 4943 2.941860 GCCCTACTGAAAAGAAGGAGCC 60.942 54.545 0.00 0.00 0.00 4.70
3864 4944 2.573915 CCCTACTGAAAAGAAGGAGCCT 59.426 50.000 0.00 0.00 0.00 4.58
3865 4945 3.604582 CCTACTGAAAAGAAGGAGCCTG 58.395 50.000 0.00 0.00 0.00 4.85
3866 4946 1.902938 ACTGAAAAGAAGGAGCCTGC 58.097 50.000 0.00 0.00 0.00 4.85
3872 4952 0.608582 AAGAAGGAGCCTGCTTGCTG 60.609 55.000 9.01 0.00 40.27 4.41
4026 5115 1.467342 GGCCGATTAGTGGTGTGTTTC 59.533 52.381 0.00 0.00 0.00 2.78
4072 5161 1.335964 TGCTCTTCTGACGAGTTTCGG 60.336 52.381 12.10 0.00 45.59 4.30
4128 5594 8.729756 TGCATCCATAAATGAAAATCTATACCG 58.270 33.333 0.00 0.00 0.00 4.02
4158 5624 8.946085 GGTACTTATCAATCAACTGAAACATGA 58.054 33.333 0.00 0.00 0.00 3.07
4164 5630 4.749245 ATCAACTGAAACATGAACCGAC 57.251 40.909 0.00 0.00 0.00 4.79
4165 5631 3.536570 TCAACTGAAACATGAACCGACA 58.463 40.909 0.00 0.00 0.00 4.35
4166 5632 3.559655 TCAACTGAAACATGAACCGACAG 59.440 43.478 0.00 2.96 0.00 3.51
4205 5699 6.550481 TGCATACCCATCAATCAACAATACAT 59.450 34.615 0.00 0.00 0.00 2.29
4233 5727 4.394920 ACCACGACATCAACATAATCAACC 59.605 41.667 0.00 0.00 0.00 3.77
4261 5756 4.736165 GGTGCAAGGCAACACAAG 57.264 55.556 0.59 0.00 46.68 3.16
4275 5770 8.079201 AGGCAACACAAGACATGAAAATGTCA 62.079 38.462 18.29 0.00 46.35 3.58
4350 5847 5.065859 TGAACGGATGCACGATCAAATAAAT 59.934 36.000 7.13 0.00 41.59 1.40
4352 5849 5.985781 ACGGATGCACGATCAAATAAATAC 58.014 37.500 3.48 0.00 37.61 1.89
4435 5935 1.576421 CGAGCAACAAGAAGCACCC 59.424 57.895 0.00 0.00 0.00 4.61
4436 5936 0.886490 CGAGCAACAAGAAGCACCCT 60.886 55.000 0.00 0.00 0.00 4.34
4476 5976 2.462456 TCTGCTTGCATCGTTTCTCT 57.538 45.000 0.00 0.00 0.00 3.10
4489 5990 5.640189 TCGTTTCTCTAGACACCCTAAAG 57.360 43.478 0.00 0.00 0.00 1.85
4586 6088 2.717639 ACCTAACTAATGGCTGCAGG 57.282 50.000 17.12 0.00 0.00 4.85
4681 6190 1.677576 CAAGCACAGAAACAAGAGGCA 59.322 47.619 0.00 0.00 0.00 4.75
4682 6191 2.057137 AGCACAGAAACAAGAGGCAA 57.943 45.000 0.00 0.00 0.00 4.52
4687 6196 4.860907 GCACAGAAACAAGAGGCAATTATG 59.139 41.667 0.00 0.00 0.00 1.90
4736 6429 6.962686 TGCAGTGATTATAGCAAATGATGTC 58.037 36.000 0.00 0.00 33.48 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.739519 CGTTCATCTCTCCTGGCTAAAGG 60.740 52.174 0.00 0.00 38.84 3.11
1 2 3.452474 CGTTCATCTCTCCTGGCTAAAG 58.548 50.000 0.00 0.00 0.00 1.85
3 4 1.757118 CCGTTCATCTCTCCTGGCTAA 59.243 52.381 0.00 0.00 0.00 3.09
4 5 1.403814 CCGTTCATCTCTCCTGGCTA 58.596 55.000 0.00 0.00 0.00 3.93
5 6 1.333636 CCCGTTCATCTCTCCTGGCT 61.334 60.000 0.00 0.00 0.00 4.75
6 7 1.144936 CCCGTTCATCTCTCCTGGC 59.855 63.158 0.00 0.00 0.00 4.85
8 9 2.028112 TGTTTCCCGTTCATCTCTCCTG 60.028 50.000 0.00 0.00 0.00 3.86
10 11 2.762535 TGTTTCCCGTTCATCTCTCC 57.237 50.000 0.00 0.00 0.00 3.71
12 13 6.405278 AAAATTTGTTTCCCGTTCATCTCT 57.595 33.333 0.00 0.00 0.00 3.10
13 14 5.342259 CGAAAATTTGTTTCCCGTTCATCTC 59.658 40.000 0.00 0.00 0.00 2.75
14 15 5.009210 TCGAAAATTTGTTTCCCGTTCATCT 59.991 36.000 0.00 0.00 0.00 2.90
15 16 5.116528 GTCGAAAATTTGTTTCCCGTTCATC 59.883 40.000 0.00 0.00 0.00 2.92
16 17 4.979815 GTCGAAAATTTGTTTCCCGTTCAT 59.020 37.500 0.00 0.00 0.00 2.57
17 18 4.352887 GTCGAAAATTTGTTTCCCGTTCA 58.647 39.130 0.00 0.00 0.00 3.18
18 19 3.419596 CGTCGAAAATTTGTTTCCCGTTC 59.580 43.478 0.00 0.00 0.00 3.95
19 20 3.364946 CGTCGAAAATTTGTTTCCCGTT 58.635 40.909 0.00 0.00 0.00 4.44
20 21 2.287129 CCGTCGAAAATTTGTTTCCCGT 60.287 45.455 0.00 0.00 0.00 5.28
21 22 2.312348 CCGTCGAAAATTTGTTTCCCG 58.688 47.619 0.00 0.00 0.00 5.14
22 23 2.055838 GCCGTCGAAAATTTGTTTCCC 58.944 47.619 0.00 0.00 0.00 3.97
23 24 2.724174 CTGCCGTCGAAAATTTGTTTCC 59.276 45.455 0.00 0.00 0.00 3.13
24 25 3.368495 ACTGCCGTCGAAAATTTGTTTC 58.632 40.909 0.00 0.00 0.00 2.78
25 26 3.430333 ACTGCCGTCGAAAATTTGTTT 57.570 38.095 0.00 0.00 0.00 2.83
26 27 3.810941 TCTACTGCCGTCGAAAATTTGTT 59.189 39.130 0.00 0.00 0.00 2.83
27 28 3.395639 TCTACTGCCGTCGAAAATTTGT 58.604 40.909 0.00 0.00 0.00 2.83
28 29 4.398549 TTCTACTGCCGTCGAAAATTTG 57.601 40.909 0.00 0.00 0.00 2.32
29 30 5.427036 TTTTCTACTGCCGTCGAAAATTT 57.573 34.783 14.05 0.00 38.86 1.82
30 31 5.622770 ATTTTCTACTGCCGTCGAAAATT 57.377 34.783 20.46 10.28 45.51 1.82
32 33 5.472148 TCTATTTTCTACTGCCGTCGAAAA 58.528 37.500 18.37 18.37 44.02 2.29
33 34 5.063180 TCTATTTTCTACTGCCGTCGAAA 57.937 39.130 4.22 4.22 34.29 3.46
34 35 4.439700 CCTCTATTTTCTACTGCCGTCGAA 60.440 45.833 0.00 0.00 0.00 3.71
35 36 3.066342 CCTCTATTTTCTACTGCCGTCGA 59.934 47.826 0.00 0.00 0.00 4.20
36 37 3.066342 TCCTCTATTTTCTACTGCCGTCG 59.934 47.826 0.00 0.00 0.00 5.12
37 38 4.650754 TCCTCTATTTTCTACTGCCGTC 57.349 45.455 0.00 0.00 0.00 4.79
38 39 4.466726 ACTTCCTCTATTTTCTACTGCCGT 59.533 41.667 0.00 0.00 0.00 5.68
39 40 5.012328 ACTTCCTCTATTTTCTACTGCCG 57.988 43.478 0.00 0.00 0.00 5.69
40 41 5.044558 CGACTTCCTCTATTTTCTACTGCC 58.955 45.833 0.00 0.00 0.00 4.85
41 42 5.652518 ACGACTTCCTCTATTTTCTACTGC 58.347 41.667 0.00 0.00 0.00 4.40
42 43 7.987649 ACTACGACTTCCTCTATTTTCTACTG 58.012 38.462 0.00 0.00 0.00 2.74
43 44 7.828223 TGACTACGACTTCCTCTATTTTCTACT 59.172 37.037 0.00 0.00 0.00 2.57
44 45 7.983307 TGACTACGACTTCCTCTATTTTCTAC 58.017 38.462 0.00 0.00 0.00 2.59
45 46 7.201714 GCTGACTACGACTTCCTCTATTTTCTA 60.202 40.741 0.00 0.00 0.00 2.10
46 47 6.404954 GCTGACTACGACTTCCTCTATTTTCT 60.405 42.308 0.00 0.00 0.00 2.52
47 48 5.744819 GCTGACTACGACTTCCTCTATTTTC 59.255 44.000 0.00 0.00 0.00 2.29
48 49 5.394333 GGCTGACTACGACTTCCTCTATTTT 60.394 44.000 0.00 0.00 0.00 1.82
49 50 4.098196 GGCTGACTACGACTTCCTCTATTT 59.902 45.833 0.00 0.00 0.00 1.40
50 51 3.633065 GGCTGACTACGACTTCCTCTATT 59.367 47.826 0.00 0.00 0.00 1.73
51 52 3.215975 GGCTGACTACGACTTCCTCTAT 58.784 50.000 0.00 0.00 0.00 1.98
52 53 2.641305 GGCTGACTACGACTTCCTCTA 58.359 52.381 0.00 0.00 0.00 2.43
53 54 1.465794 GGCTGACTACGACTTCCTCT 58.534 55.000 0.00 0.00 0.00 3.69
54 55 0.099082 CGGCTGACTACGACTTCCTC 59.901 60.000 0.00 0.00 0.00 3.71
55 56 0.322277 TCGGCTGACTACGACTTCCT 60.322 55.000 0.00 0.00 33.69 3.36
56 57 0.739561 ATCGGCTGACTACGACTTCC 59.260 55.000 0.00 0.00 42.39 3.46
57 58 1.828832 CATCGGCTGACTACGACTTC 58.171 55.000 0.00 0.00 42.39 3.01
58 59 0.179134 GCATCGGCTGACTACGACTT 60.179 55.000 0.00 0.00 42.39 3.01
59 60 1.313091 TGCATCGGCTGACTACGACT 61.313 55.000 0.00 0.00 42.39 4.18
60 61 0.249073 ATGCATCGGCTGACTACGAC 60.249 55.000 0.00 0.00 42.39 4.34
61 62 0.249031 CATGCATCGGCTGACTACGA 60.249 55.000 0.00 0.00 43.85 3.43
62 63 0.528466 ACATGCATCGGCTGACTACG 60.528 55.000 0.00 0.00 41.91 3.51
63 64 1.202463 AGACATGCATCGGCTGACTAC 60.202 52.381 0.00 0.00 41.91 2.73
64 65 1.114627 AGACATGCATCGGCTGACTA 58.885 50.000 0.00 0.00 41.91 2.59
65 66 0.461516 CAGACATGCATCGGCTGACT 60.462 55.000 20.88 5.03 41.91 3.41
66 67 0.742281 ACAGACATGCATCGGCTGAC 60.742 55.000 28.00 8.41 41.91 3.51
67 68 0.460811 GACAGACATGCATCGGCTGA 60.461 55.000 28.00 0.00 41.91 4.26
68 69 1.434622 GGACAGACATGCATCGGCTG 61.435 60.000 22.70 22.70 41.91 4.85
69 70 1.153289 GGACAGACATGCATCGGCT 60.153 57.895 0.00 0.00 41.91 5.52
70 71 2.528743 CGGACAGACATGCATCGGC 61.529 63.158 0.00 0.00 41.68 5.54
71 72 1.884464 CCGGACAGACATGCATCGG 60.884 63.158 0.00 0.46 32.81 4.18
72 73 1.141665 TCCGGACAGACATGCATCG 59.858 57.895 0.00 0.00 0.00 3.84
73 74 0.811616 GGTCCGGACAGACATGCATC 60.812 60.000 34.40 10.52 38.59 3.91
74 75 1.221840 GGTCCGGACAGACATGCAT 59.778 57.895 34.40 0.00 38.59 3.96
75 76 1.763546 TTGGTCCGGACAGACATGCA 61.764 55.000 34.40 18.93 38.59 3.96
76 77 1.003839 TTGGTCCGGACAGACATGC 60.004 57.895 34.40 16.51 38.59 4.06
77 78 0.391661 CCTTGGTCCGGACAGACATG 60.392 60.000 34.40 22.89 38.59 3.21
78 79 1.553690 CCCTTGGTCCGGACAGACAT 61.554 60.000 34.40 0.00 38.59 3.06
79 80 2.214216 CCCTTGGTCCGGACAGACA 61.214 63.158 34.40 21.12 38.59 3.41
80 81 2.168666 GACCCTTGGTCCGGACAGAC 62.169 65.000 34.40 18.71 46.19 3.51
97 98 1.668151 GCAGGGCCGGAATATCGAC 60.668 63.158 5.05 0.00 0.00 4.20
127 128 6.422223 ACGTACGAGTAGTAATAATCAACCG 58.578 40.000 24.41 0.00 37.02 4.44
197 200 1.128692 GCCAATGGAAACTTCGACTCG 59.871 52.381 2.05 0.00 0.00 4.18
211 214 1.528586 CTAATCGAAGCGAGGCCAATG 59.471 52.381 5.01 0.00 39.91 2.82
212 215 1.871080 CTAATCGAAGCGAGGCCAAT 58.129 50.000 5.01 0.00 39.91 3.16
225 228 3.131223 TCACTCCTCTTGGAAGCTAATCG 59.869 47.826 0.00 0.00 42.66 3.34
231 234 2.903798 CAGATCACTCCTCTTGGAAGC 58.096 52.381 0.00 0.00 42.66 3.86
244 247 3.055385 TGTGGTTAGGTTAGGCAGATCAC 60.055 47.826 0.00 0.00 0.00 3.06
248 251 2.301870 CACTGTGGTTAGGTTAGGCAGA 59.698 50.000 0.00 0.00 0.00 4.26
270 278 2.282180 TTTTCAGCGAGGTGGGGC 60.282 61.111 2.30 0.00 0.00 5.80
300 312 4.938226 AGGATGGAAGAAAATGTCGTCTTC 59.062 41.667 5.09 5.09 45.99 2.87
306 318 4.437930 CGCAGAAGGATGGAAGAAAATGTC 60.438 45.833 0.00 0.00 0.00 3.06
333 462 3.959943 ACTTCAATTTGTTTTCCCGACG 58.040 40.909 0.00 0.00 0.00 5.12
335 464 5.584253 TTGACTTCAATTTGTTTTCCCGA 57.416 34.783 0.00 0.00 0.00 5.14
336 465 6.654793 TTTTGACTTCAATTTGTTTTCCCG 57.345 33.333 0.00 0.00 35.55 5.14
337 466 7.416817 CCATTTTGACTTCAATTTGTTTTCCC 58.583 34.615 0.00 0.00 35.55 3.97
363 492 5.470098 TGAAAGTTAATCTGCTCAGGTGAAC 59.530 40.000 2.75 2.75 0.00 3.18
392 521 7.147915 TGGATGCATGGAAGGAGTAATAAAAAC 60.148 37.037 2.46 0.00 0.00 2.43
412 541 3.619233 ACGTGTTACAAAAGTGGATGC 57.381 42.857 0.00 0.00 0.00 3.91
413 542 5.660629 TGTACGTGTTACAAAAGTGGATG 57.339 39.130 0.00 0.00 37.78 3.51
414 543 5.761234 ACATGTACGTGTTACAAAAGTGGAT 59.239 36.000 15.10 0.00 44.11 3.41
433 562 8.120465 CACTTTTGTAAGACGTTTTAGACATGT 58.880 33.333 0.00 0.00 35.30 3.21
434 563 8.332464 TCACTTTTGTAAGACGTTTTAGACATG 58.668 33.333 0.00 0.00 35.30 3.21
436 565 7.201548 GGTCACTTTTGTAAGACGTTTTAGACA 60.202 37.037 0.00 0.00 35.30 3.41
437 566 7.010830 AGGTCACTTTTGTAAGACGTTTTAGAC 59.989 37.037 0.00 1.94 35.30 2.59
439 568 7.242914 AGGTCACTTTTGTAAGACGTTTTAG 57.757 36.000 0.00 0.00 35.30 1.85
440 569 6.019640 CGAGGTCACTTTTGTAAGACGTTTTA 60.020 38.462 0.00 0.00 35.30 1.52
441 570 5.220529 CGAGGTCACTTTTGTAAGACGTTTT 60.221 40.000 0.00 0.00 35.30 2.43
443 572 3.800506 CGAGGTCACTTTTGTAAGACGTT 59.199 43.478 0.00 0.00 35.30 3.99
444 573 3.378339 CGAGGTCACTTTTGTAAGACGT 58.622 45.455 0.00 0.00 35.30 4.34
445 574 2.155155 GCGAGGTCACTTTTGTAAGACG 59.845 50.000 0.00 0.00 35.30 4.18
446 575 2.479275 GGCGAGGTCACTTTTGTAAGAC 59.521 50.000 0.00 0.00 35.30 3.01
447 576 2.103432 TGGCGAGGTCACTTTTGTAAGA 59.897 45.455 0.00 0.00 35.30 2.10
448 577 2.489971 TGGCGAGGTCACTTTTGTAAG 58.510 47.619 0.00 0.00 37.40 2.34
449 578 2.623878 TGGCGAGGTCACTTTTGTAA 57.376 45.000 0.00 0.00 0.00 2.41
450 579 2.851263 ATGGCGAGGTCACTTTTGTA 57.149 45.000 0.00 0.00 0.00 2.41
451 580 1.981256 AATGGCGAGGTCACTTTTGT 58.019 45.000 0.00 0.00 0.00 2.83
452 581 3.308530 GAAAATGGCGAGGTCACTTTTG 58.691 45.455 0.00 0.00 0.00 2.44
454 583 1.535462 CGAAAATGGCGAGGTCACTTT 59.465 47.619 0.00 0.00 0.00 2.66
455 584 1.156736 CGAAAATGGCGAGGTCACTT 58.843 50.000 0.00 0.00 0.00 3.16
456 585 0.673644 CCGAAAATGGCGAGGTCACT 60.674 55.000 0.00 0.00 0.00 3.41
457 586 1.644786 CCCGAAAATGGCGAGGTCAC 61.645 60.000 0.00 0.00 0.00 3.67
458 587 1.376683 CCCGAAAATGGCGAGGTCA 60.377 57.895 0.00 0.00 0.00 4.02
459 588 2.112815 CCCCGAAAATGGCGAGGTC 61.113 63.158 0.00 0.00 0.00 3.85
460 589 2.045340 CCCCGAAAATGGCGAGGT 60.045 61.111 0.00 0.00 0.00 3.85
511 1048 9.322773 GCTTTTATATTAGTTTACGGAGGAAGT 57.677 33.333 0.00 0.00 0.00 3.01
512 1049 8.485591 CGCTTTTATATTAGTTTACGGAGGAAG 58.514 37.037 0.00 0.00 0.00 3.46
513 1050 7.981225 ACGCTTTTATATTAGTTTACGGAGGAA 59.019 33.333 0.00 0.00 0.00 3.36
514 1051 7.491682 ACGCTTTTATATTAGTTTACGGAGGA 58.508 34.615 0.00 0.00 0.00 3.71
515 1052 7.704789 ACGCTTTTATATTAGTTTACGGAGG 57.295 36.000 0.00 0.00 0.00 4.30
518 1055 9.853921 CCTAAACGCTTTTATATTAGTTTACGG 57.146 33.333 0.00 0.00 34.29 4.02
523 1060 9.662947 AGTGACCTAAACGCTTTTATATTAGTT 57.337 29.630 0.00 0.00 0.00 2.24
531 1068 9.492973 ACTAAAATAGTGACCTAAACGCTTTTA 57.507 29.630 0.00 0.00 37.69 1.52
532 1069 8.387190 ACTAAAATAGTGACCTAAACGCTTTT 57.613 30.769 0.00 0.00 37.69 2.27
533 1070 7.974482 ACTAAAATAGTGACCTAAACGCTTT 57.026 32.000 0.00 0.00 37.69 3.51
534 1071 9.662947 ATTACTAAAATAGTGACCTAAACGCTT 57.337 29.630 0.37 0.00 39.81 4.68
535 1072 9.310716 GATTACTAAAATAGTGACCTAAACGCT 57.689 33.333 0.37 0.00 39.81 5.07
536 1073 9.310716 AGATTACTAAAATAGTGACCTAAACGC 57.689 33.333 0.37 0.00 39.81 4.84
542 1079 9.310716 GCGTTTAGATTACTAAAATAGTGACCT 57.689 33.333 0.00 0.00 45.97 3.85
543 1080 9.310716 AGCGTTTAGATTACTAAAATAGTGACC 57.689 33.333 0.00 0.00 45.97 4.02
563 1100 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
564 1101 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
565 1102 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
566 1103 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
573 1110 8.145122 GCTGCTACTTCCTCTGTAAACTAATAT 58.855 37.037 0.00 0.00 0.00 1.28
574 1111 7.123697 TGCTGCTACTTCCTCTGTAAACTAATA 59.876 37.037 0.00 0.00 0.00 0.98
575 1112 6.070767 TGCTGCTACTTCCTCTGTAAACTAAT 60.071 38.462 0.00 0.00 0.00 1.73
576 1113 5.245301 TGCTGCTACTTCCTCTGTAAACTAA 59.755 40.000 0.00 0.00 0.00 2.24
577 1114 4.770531 TGCTGCTACTTCCTCTGTAAACTA 59.229 41.667 0.00 0.00 0.00 2.24
578 1115 3.578716 TGCTGCTACTTCCTCTGTAAACT 59.421 43.478 0.00 0.00 0.00 2.66
579 1116 3.926616 TGCTGCTACTTCCTCTGTAAAC 58.073 45.455 0.00 0.00 0.00 2.01
580 1117 3.832490 TCTGCTGCTACTTCCTCTGTAAA 59.168 43.478 0.00 0.00 0.00 2.01
581 1118 3.431415 TCTGCTGCTACTTCCTCTGTAA 58.569 45.455 0.00 0.00 0.00 2.41
582 1119 3.087370 TCTGCTGCTACTTCCTCTGTA 57.913 47.619 0.00 0.00 0.00 2.74
583 1120 1.930251 TCTGCTGCTACTTCCTCTGT 58.070 50.000 0.00 0.00 0.00 3.41
584 1121 3.540314 ATTCTGCTGCTACTTCCTCTG 57.460 47.619 0.00 0.00 0.00 3.35
585 1122 4.141824 GGTAATTCTGCTGCTACTTCCTCT 60.142 45.833 0.00 0.00 0.00 3.69
586 1123 4.123506 GGTAATTCTGCTGCTACTTCCTC 58.876 47.826 0.00 0.00 0.00 3.71
587 1124 3.777522 AGGTAATTCTGCTGCTACTTCCT 59.222 43.478 0.00 0.00 0.00 3.36
588 1125 3.873952 CAGGTAATTCTGCTGCTACTTCC 59.126 47.826 0.00 0.00 0.00 3.46
589 1126 4.508662 ACAGGTAATTCTGCTGCTACTTC 58.491 43.478 0.00 0.00 38.26 3.01
599 1136 7.228706 ACCACTTTAGTTTGACAGGTAATTCTG 59.771 37.037 0.00 0.00 40.40 3.02
609 1146 5.284861 TCTGCTACCACTTTAGTTTGACA 57.715 39.130 0.00 0.00 0.00 3.58
616 1153 6.988580 TGATGATGATTCTGCTACCACTTTAG 59.011 38.462 0.00 0.00 0.00 1.85
617 1154 6.888105 TGATGATGATTCTGCTACCACTTTA 58.112 36.000 0.00 0.00 0.00 1.85
640 1177 4.686091 TCTTTCGTGCTCAACAAGTCTATG 59.314 41.667 0.00 0.00 0.00 2.23
641 1178 4.883083 TCTTTCGTGCTCAACAAGTCTAT 58.117 39.130 0.00 0.00 0.00 1.98
642 1179 4.316205 TCTTTCGTGCTCAACAAGTCTA 57.684 40.909 0.00 0.00 0.00 2.59
654 1191 2.414161 CCGGGATTCTTTTCTTTCGTGC 60.414 50.000 0.00 0.00 0.00 5.34
716 1253 3.955543 TTGATTCCCAAGCCCGCCC 62.956 63.158 0.00 0.00 0.00 6.13
717 1254 2.362375 TTGATTCCCAAGCCCGCC 60.362 61.111 0.00 0.00 0.00 6.13
745 1282 7.703058 ACAATGGACTTGGGAATTAAGTTAG 57.297 36.000 0.00 0.00 38.42 2.34
768 1315 1.279025 TGGAGGAGGGGGCAATGTAC 61.279 60.000 0.00 0.00 0.00 2.90
770 1317 1.856873 TTGGAGGAGGGGGCAATGT 60.857 57.895 0.00 0.00 0.00 2.71
771 1318 1.076485 CTTGGAGGAGGGGGCAATG 60.076 63.158 0.00 0.00 0.00 2.82
869 1416 4.501714 TACTTGTAGGCGCGGGCG 62.502 66.667 18.90 8.99 41.24 6.13
870 1417 2.585247 CTACTTGTAGGCGCGGGC 60.585 66.667 17.31 17.31 38.90 6.13
874 1531 1.521681 CCTGGCTACTTGTAGGCGC 60.522 63.158 23.03 0.00 44.55 6.53
928 1585 2.281484 TCGTTGGTTCCTGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
936 1593 0.375803 ACGTGTTTGCTCGTTGGTTC 59.624 50.000 0.00 0.00 41.25 3.62
937 1594 1.328374 GTACGTGTTTGCTCGTTGGTT 59.672 47.619 0.00 0.00 43.34 3.67
938 1595 0.932399 GTACGTGTTTGCTCGTTGGT 59.068 50.000 0.00 0.00 43.34 3.67
939 1596 0.111442 CGTACGTGTTTGCTCGTTGG 60.111 55.000 7.22 0.00 43.34 3.77
940 1597 0.716926 GCGTACGTGTTTGCTCGTTG 60.717 55.000 17.90 0.00 43.34 4.10
946 1603 1.127225 GACTCGCGTACGTGTTTGC 59.873 57.895 26.44 12.13 45.27 3.68
949 1606 0.662374 CTTGGACTCGCGTACGTGTT 60.662 55.000 26.44 15.79 45.27 3.32
962 1619 6.174049 AGTAGCTAATCTCAAAACCTTGGAC 58.826 40.000 0.00 0.00 33.01 4.02
982 1639 2.028294 CCATGGATGCTAGGCTGAGTAG 60.028 54.545 5.56 0.00 0.00 2.57
983 1640 1.973515 CCATGGATGCTAGGCTGAGTA 59.026 52.381 5.56 0.00 0.00 2.59
984 1641 0.763652 CCATGGATGCTAGGCTGAGT 59.236 55.000 5.56 0.00 0.00 3.41
985 1642 0.763652 ACCATGGATGCTAGGCTGAG 59.236 55.000 21.47 0.00 0.00 3.35
986 1643 0.471191 CACCATGGATGCTAGGCTGA 59.529 55.000 21.47 0.00 0.00 4.26
987 1644 0.536687 CCACCATGGATGCTAGGCTG 60.537 60.000 21.47 2.08 40.96 4.85
988 1645 1.842007 CCACCATGGATGCTAGGCT 59.158 57.895 21.47 0.00 40.96 4.58
1010 1667 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1011 1668 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1012 1669 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1013 1670 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1014 1671 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1015 1672 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1016 1673 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1017 1674 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1018 1675 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1019 1676 3.397649 ATCGTCGTCGTCGTCGTCG 62.398 63.158 20.39 20.39 45.27 5.12
1020 1677 1.643785 GATCGTCGTCGTCGTCGTC 60.644 63.158 18.44 12.59 45.27 4.20
1021 1678 2.393362 GATCGTCGTCGTCGTCGT 59.607 61.111 18.44 8.49 45.27 4.34
1022 1679 2.349428 GGATCGTCGTCGTCGTCG 60.349 66.667 14.18 14.18 46.06 5.12
1023 1680 1.296722 CTGGATCGTCGTCGTCGTC 60.297 63.158 11.41 8.37 38.33 4.20
1024 1681 1.964290 GACTGGATCGTCGTCGTCGT 61.964 60.000 11.41 0.00 38.33 4.34
1025 1682 1.296722 GACTGGATCGTCGTCGTCG 60.297 63.158 5.50 5.50 38.33 5.12
1026 1683 4.666728 GACTGGATCGTCGTCGTC 57.333 61.111 1.33 0.00 38.33 4.20
1114 1771 3.053077 CAAATAGGGGGTGGTAGATCCA 58.947 50.000 0.00 0.00 45.01 3.41
1115 1772 3.053826 ACAAATAGGGGGTGGTAGATCC 58.946 50.000 0.00 0.00 0.00 3.36
1116 1773 4.412528 AGAACAAATAGGGGGTGGTAGATC 59.587 45.833 0.00 0.00 0.00 2.75
1117 1774 4.166144 CAGAACAAATAGGGGGTGGTAGAT 59.834 45.833 0.00 0.00 0.00 1.98
1118 1775 3.521937 CAGAACAAATAGGGGGTGGTAGA 59.478 47.826 0.00 0.00 0.00 2.59
1119 1776 3.265995 ACAGAACAAATAGGGGGTGGTAG 59.734 47.826 0.00 0.00 0.00 3.18
1120 1777 3.261962 ACAGAACAAATAGGGGGTGGTA 58.738 45.455 0.00 0.00 0.00 3.25
1121 1778 2.070573 ACAGAACAAATAGGGGGTGGT 58.929 47.619 0.00 0.00 0.00 4.16
1122 1779 2.899303 ACAGAACAAATAGGGGGTGG 57.101 50.000 0.00 0.00 0.00 4.61
1123 1780 3.758554 CAGAACAGAACAAATAGGGGGTG 59.241 47.826 0.00 0.00 0.00 4.61
1124 1781 3.397955 ACAGAACAGAACAAATAGGGGGT 59.602 43.478 0.00 0.00 0.00 4.95
1125 1782 4.034285 ACAGAACAGAACAAATAGGGGG 57.966 45.455 0.00 0.00 0.00 5.40
1127 1784 6.656693 AGATCAACAGAACAGAACAAATAGGG 59.343 38.462 0.00 0.00 0.00 3.53
1128 1785 7.173907 ACAGATCAACAGAACAGAACAAATAGG 59.826 37.037 0.00 0.00 0.00 2.57
1146 1803 5.394883 GGGGTACGTATTCAGAACAGATCAA 60.395 44.000 0.00 0.00 0.00 2.57
1147 1804 4.098960 GGGGTACGTATTCAGAACAGATCA 59.901 45.833 0.00 0.00 0.00 2.92
1148 1805 4.341520 AGGGGTACGTATTCAGAACAGATC 59.658 45.833 0.00 0.00 0.00 2.75
1156 1813 4.159879 AGAGAAACAGGGGTACGTATTCAG 59.840 45.833 0.00 0.00 0.00 3.02
1163 1820 3.195825 AGATTCAGAGAAACAGGGGTACG 59.804 47.826 0.00 0.00 0.00 3.67
1166 1823 3.251484 TGAGATTCAGAGAAACAGGGGT 58.749 45.455 0.00 0.00 0.00 4.95
1194 1868 3.197790 CCGTCGCTGAGGCCAATG 61.198 66.667 5.01 0.00 34.44 2.82
1291 1973 1.265905 GAGCAAAGTTACAACACCCCG 59.734 52.381 0.00 0.00 0.00 5.73
1292 1974 1.265905 CGAGCAAAGTTACAACACCCC 59.734 52.381 0.00 0.00 0.00 4.95
1293 1975 1.334689 GCGAGCAAAGTTACAACACCC 60.335 52.381 0.00 0.00 0.00 4.61
1294 1976 1.602377 AGCGAGCAAAGTTACAACACC 59.398 47.619 0.00 0.00 0.00 4.16
1295 1977 3.334272 AAGCGAGCAAAGTTACAACAC 57.666 42.857 0.00 0.00 0.00 3.32
1296 1978 3.625764 AGAAAGCGAGCAAAGTTACAACA 59.374 39.130 0.00 0.00 0.00 3.33
1297 1979 4.210832 AGAAAGCGAGCAAAGTTACAAC 57.789 40.909 0.00 0.00 0.00 3.32
1309 1991 5.171476 TCCTGATTAGTTGAAGAAAGCGAG 58.829 41.667 0.00 0.00 0.00 5.03
1318 2000 6.683110 GCCTCGTAGATTCCTGATTAGTTGAA 60.683 42.308 0.00 0.00 33.89 2.69
1324 2006 3.845860 AGGCCTCGTAGATTCCTGATTA 58.154 45.455 0.00 0.00 36.91 1.75
1325 2007 2.683768 AGGCCTCGTAGATTCCTGATT 58.316 47.619 0.00 0.00 36.91 2.57
1326 2008 2.366916 CAAGGCCTCGTAGATTCCTGAT 59.633 50.000 5.23 0.00 38.00 2.90
1327 2009 1.757118 CAAGGCCTCGTAGATTCCTGA 59.243 52.381 5.23 0.00 38.00 3.86
1345 2039 0.984961 CCTCCATCCCTCAGCTCCAA 60.985 60.000 0.00 0.00 0.00 3.53
1386 2080 1.477295 GAAGTAGGGACCTTGAGGACG 59.523 57.143 3.59 0.00 38.94 4.79
1400 2094 3.775316 AGGATTGGTAGGTGGTGAAGTAG 59.225 47.826 0.00 0.00 0.00 2.57
1425 2125 7.334671 CCTCATCTATACAGTACTCGCAGATTA 59.665 40.741 0.00 0.00 33.89 1.75
1431 2131 5.943706 TTCCTCATCTATACAGTACTCGC 57.056 43.478 0.00 0.00 0.00 5.03
1432 2132 9.828852 GTTAATTCCTCATCTATACAGTACTCG 57.171 37.037 0.00 0.00 0.00 4.18
1444 2144 9.829507 CAGTTGATCTTAGTTAATTCCTCATCT 57.170 33.333 0.00 0.00 0.00 2.90
1445 2145 8.555361 GCAGTTGATCTTAGTTAATTCCTCATC 58.445 37.037 0.00 0.00 0.00 2.92
1447 2147 7.394016 TGCAGTTGATCTTAGTTAATTCCTCA 58.606 34.615 0.00 0.00 0.00 3.86
1448 2148 7.849804 TGCAGTTGATCTTAGTTAATTCCTC 57.150 36.000 0.00 0.00 0.00 3.71
1461 2161 8.420222 GCTCCAGTATATATATGCAGTTGATCT 58.580 37.037 12.61 0.00 0.00 2.75
1462 2162 7.380870 CGCTCCAGTATATATATGCAGTTGATC 59.619 40.741 12.61 0.00 0.00 2.92
1463 2163 7.068716 TCGCTCCAGTATATATATGCAGTTGAT 59.931 37.037 12.61 0.00 0.00 2.57
1464 2164 6.377146 TCGCTCCAGTATATATATGCAGTTGA 59.623 38.462 12.61 3.51 0.00 3.18
1465 2165 6.473778 GTCGCTCCAGTATATATATGCAGTTG 59.526 42.308 12.61 3.30 0.00 3.16
1466 2166 6.152831 TGTCGCTCCAGTATATATATGCAGTT 59.847 38.462 12.61 0.00 0.00 3.16
1467 2167 5.652452 TGTCGCTCCAGTATATATATGCAGT 59.348 40.000 12.61 0.00 0.00 4.40
1468 2168 5.974158 GTGTCGCTCCAGTATATATATGCAG 59.026 44.000 12.61 5.12 0.00 4.41
1469 2169 5.652452 AGTGTCGCTCCAGTATATATATGCA 59.348 40.000 12.61 0.00 0.00 3.96
1470 2170 5.974158 CAGTGTCGCTCCAGTATATATATGC 59.026 44.000 5.44 4.07 0.00 3.14
1471 2171 7.321745 TCAGTGTCGCTCCAGTATATATATG 57.678 40.000 5.44 0.00 0.00 1.78
1472 2172 7.041712 CGATCAGTGTCGCTCCAGTATATATAT 60.042 40.741 0.00 0.00 34.56 0.86
1473 2173 6.258068 CGATCAGTGTCGCTCCAGTATATATA 59.742 42.308 0.00 0.00 34.56 0.86
1502 2202 2.202797 CAGAGATGGCACGGTCCG 60.203 66.667 10.48 10.48 0.00 4.79
1503 2203 0.179000 ATTCAGAGATGGCACGGTCC 59.821 55.000 0.00 0.00 0.00 4.46
1504 2204 2.029838 AATTCAGAGATGGCACGGTC 57.970 50.000 0.00 0.00 0.00 4.79
1505 2205 2.290260 TGAAATTCAGAGATGGCACGGT 60.290 45.455 0.00 0.00 0.00 4.83
1506 2206 2.358957 TGAAATTCAGAGATGGCACGG 58.641 47.619 0.00 0.00 0.00 4.94
1578 2278 2.033602 TCAGTCTGCTCGGTCGGA 59.966 61.111 0.00 0.00 0.00 4.55
1593 2293 3.325870 GACCATGAAGTTGTCGATGTCA 58.674 45.455 0.00 0.00 0.00 3.58
1666 2366 8.777865 ATAAATAGTCGTTGGATGATGGTATG 57.222 34.615 0.00 0.00 0.00 2.39
1670 2372 7.386851 AGGTATAAATAGTCGTTGGATGATGG 58.613 38.462 0.00 0.00 0.00 3.51
1701 2403 4.160439 CAGTATGAAGAGTGGAAGTAGCCA 59.840 45.833 0.00 0.00 39.69 4.75
1727 2443 7.169158 TCGCATCCAAAGAAAGGAAATTATT 57.831 32.000 0.00 0.00 38.93 1.40
1736 2452 6.095377 AGCTTTTTATCGCATCCAAAGAAAG 58.905 36.000 0.00 0.00 0.00 2.62
1753 2469 1.362355 CGTTTGCCCCGAGCTTTTT 59.638 52.632 0.00 0.00 44.23 1.94
1843 2571 4.951094 TGTGTAGGTGGTTTAGTTTTTGCT 59.049 37.500 0.00 0.00 0.00 3.91
1867 2595 3.531538 TCTAGCAATTCAACCGATGACC 58.468 45.455 0.00 0.00 37.92 4.02
1869 2597 3.450817 TCCTCTAGCAATTCAACCGATGA 59.549 43.478 0.00 0.00 35.85 2.92
1874 2602 5.675538 ACTACATCCTCTAGCAATTCAACC 58.324 41.667 0.00 0.00 0.00 3.77
1918 2651 1.135489 AGATTCGCAATGTGCTGCAAG 60.135 47.619 2.77 0.00 42.25 4.01
1990 2723 3.385384 CCAGCGTGAGAGCCTCCA 61.385 66.667 0.00 0.00 38.01 3.86
2005 2738 1.607178 CATGGCCAGCTTGTTCCCA 60.607 57.895 13.05 0.00 0.00 4.37
2017 2750 2.880890 CAGTATTCTTACCTGCATGGCC 59.119 50.000 0.00 0.00 40.22 5.36
2117 2858 3.802866 GGAGGATCATGAACTCCTGAAC 58.197 50.000 29.07 14.65 45.73 3.18
2208 2949 4.846779 TCAAAAGGGTTAGATGTTGTGC 57.153 40.909 0.00 0.00 0.00 4.57
2210 2951 6.721208 ACATCATCAAAAGGGTTAGATGTTGT 59.279 34.615 10.50 10.50 41.02 3.32
2264 3005 6.311935 GCATACAAAATGTGTCAGCATTCATT 59.688 34.615 0.00 0.00 41.98 2.57
2303 3044 3.209410 GGCATCCTGACCATACTTCTTG 58.791 50.000 0.00 0.00 0.00 3.02
2315 3056 0.950836 CAACGTTTGTGGCATCCTGA 59.049 50.000 0.00 0.00 0.00 3.86
2318 3059 1.288752 CCCAACGTTTGTGGCATCC 59.711 57.895 0.00 0.00 0.00 3.51
2321 3062 1.152652 ATCCCCAACGTTTGTGGCA 60.153 52.632 0.00 0.00 0.00 4.92
2354 3095 3.756434 TGTGCTTTACCTGAATGTTAGGC 59.244 43.478 0.00 0.00 38.96 3.93
2372 3113 0.447801 CAGCAGGGAAACGTATGTGC 59.552 55.000 0.00 0.00 0.00 4.57
2377 3118 0.107831 ACTTGCAGCAGGGAAACGTA 59.892 50.000 9.68 0.00 0.00 3.57
2378 3119 0.107831 TACTTGCAGCAGGGAAACGT 59.892 50.000 9.68 0.00 0.00 3.99
2380 3121 3.756434 TGTTATACTTGCAGCAGGGAAAC 59.244 43.478 9.68 10.02 0.00 2.78
2384 3125 3.347216 ACTTGTTATACTTGCAGCAGGG 58.653 45.455 9.68 2.76 0.00 4.45
2385 3126 4.216257 ACAACTTGTTATACTTGCAGCAGG 59.784 41.667 2.26 2.26 0.00 4.85
2388 3129 5.179368 TGAGACAACTTGTTATACTTGCAGC 59.821 40.000 0.00 0.00 0.00 5.25
2389 3130 6.785488 TGAGACAACTTGTTATACTTGCAG 57.215 37.500 0.00 0.00 0.00 4.41
2390 3131 6.765989 AGTTGAGACAACTTGTTATACTTGCA 59.234 34.615 10.73 0.00 0.00 4.08
2391 3132 7.190920 AGTTGAGACAACTTGTTATACTTGC 57.809 36.000 10.73 0.00 0.00 4.01
2398 3285 7.204604 TCGACATAAGTTGAGACAACTTGTTA 58.795 34.615 28.42 16.12 40.38 2.41
2406 3293 6.185852 TCGTATTCGACATAAGTTGAGACA 57.814 37.500 0.00 0.00 41.35 3.41
2466 3361 8.981659 CCCTCCTTGTTTTCCTGAATAATTATT 58.018 33.333 10.51 10.51 0.00 1.40
2470 3365 4.711846 GCCCTCCTTGTTTTCCTGAATAAT 59.288 41.667 0.00 0.00 0.00 1.28
2552 3447 5.184892 ACCATGACCTAAGCAAAGAGATT 57.815 39.130 0.00 0.00 0.00 2.40
2553 3448 4.851639 ACCATGACCTAAGCAAAGAGAT 57.148 40.909 0.00 0.00 0.00 2.75
2633 3528 3.193903 CAGCAACATCCATTCCAATGACA 59.806 43.478 0.56 0.00 38.70 3.58
2672 3567 3.366396 GTCATAGGTCTGGTCCTTCTCA 58.634 50.000 0.00 0.00 38.86 3.27
2724 3619 1.366319 ATGAGAACAGGGGAGCAAGT 58.634 50.000 0.00 0.00 0.00 3.16
2826 3785 8.531146 TCTGTTCAGTTCAGTCATATGATGTTA 58.469 33.333 9.02 0.00 34.86 2.41
2834 3793 5.462068 CGTTGTTCTGTTCAGTTCAGTCATA 59.538 40.000 0.00 0.00 34.86 2.15
2863 3822 1.073125 TCGCCTGAGATTTTGTGGGAA 59.927 47.619 0.00 0.00 0.00 3.97
2917 3876 1.033746 TCGACACGATGGGGTACTCC 61.034 60.000 4.21 4.21 0.00 3.85
2941 3900 0.747255 CATCCTGATCGAACGGGTCT 59.253 55.000 19.03 6.52 37.55 3.85
3066 4036 6.877668 TTCTGTGGTAAACCCAGTGATATA 57.122 37.500 13.79 0.00 46.45 0.86
3090 4060 5.657474 TCGGTCAAGCTCGTAGAAATATTT 58.343 37.500 0.00 0.00 34.09 1.40
3093 4063 4.607955 CATCGGTCAAGCTCGTAGAAATA 58.392 43.478 0.00 0.00 34.09 1.40
3098 4068 0.872021 GGCATCGGTCAAGCTCGTAG 60.872 60.000 0.00 0.00 0.00 3.51
3108 4078 1.401905 GAATCCAAACAGGCATCGGTC 59.598 52.381 0.00 0.00 37.29 4.79
3255 4227 7.972832 TCACCTGTTTACCATAAACAACTAG 57.027 36.000 13.53 7.05 39.36 2.57
3256 4228 7.229106 GGTTCACCTGTTTACCATAAACAACTA 59.771 37.037 13.53 0.61 39.36 2.24
3258 4230 6.183360 TGGTTCACCTGTTTACCATAAACAAC 60.183 38.462 13.53 9.13 39.36 3.32
3261 4233 5.766174 TCTGGTTCACCTGTTTACCATAAAC 59.234 40.000 4.80 4.80 39.74 2.01
3263 4235 5.570205 TCTGGTTCACCTGTTTACCATAA 57.430 39.130 0.00 0.00 39.74 1.90
3265 4237 4.657814 ATCTGGTTCACCTGTTTACCAT 57.342 40.909 0.00 0.00 39.74 3.55
3267 4239 4.514401 CCTATCTGGTTCACCTGTTTACC 58.486 47.826 0.00 0.00 36.48 2.85
3268 4240 3.939592 GCCTATCTGGTTCACCTGTTTAC 59.060 47.826 0.00 0.00 38.35 2.01
3281 4259 0.387202 CTGTCACCGAGCCTATCTGG 59.613 60.000 0.00 0.00 39.35 3.86
3299 4277 2.441164 ACGGCCTCGATGCTCTCT 60.441 61.111 12.54 0.00 40.11 3.10
3409 4410 5.124297 TGTTCAGTGCAAACAGATCATATGG 59.876 40.000 2.13 0.00 32.98 2.74
3410 4411 6.185852 TGTTCAGTGCAAACAGATCATATG 57.814 37.500 0.00 0.00 32.98 1.78
3443 4445 2.104622 TCTGTCTCACCACTGCAAATGA 59.895 45.455 0.00 0.00 0.00 2.57
3444 4446 2.483106 CTCTGTCTCACCACTGCAAATG 59.517 50.000 0.00 0.00 0.00 2.32
3445 4447 2.551721 CCTCTGTCTCACCACTGCAAAT 60.552 50.000 0.00 0.00 0.00 2.32
3447 4449 0.394192 CCTCTGTCTCACCACTGCAA 59.606 55.000 0.00 0.00 0.00 4.08
3527 4529 2.745255 AGCTCTGGTCCAGCTCTGGT 62.745 60.000 14.64 6.91 44.25 4.00
3528 4530 1.551908 AAGCTCTGGTCCAGCTCTGG 61.552 60.000 14.64 9.61 46.96 3.86
3529 4531 0.391395 CAAGCTCTGGTCCAGCTCTG 60.391 60.000 14.64 7.29 46.96 3.35
3530 4532 0.543883 TCAAGCTCTGGTCCAGCTCT 60.544 55.000 14.64 10.13 46.96 4.09
3531 4533 0.322975 TTCAAGCTCTGGTCCAGCTC 59.677 55.000 14.64 7.95 46.96 4.09
3533 4535 1.742268 GATTTCAAGCTCTGGTCCAGC 59.258 52.381 14.64 4.35 37.12 4.85
3534 4536 2.026449 AGGATTTCAAGCTCTGGTCCAG 60.026 50.000 13.21 13.21 0.00 3.86
3535 4537 1.988107 AGGATTTCAAGCTCTGGTCCA 59.012 47.619 0.00 0.00 0.00 4.02
3536 4538 2.797177 AGGATTTCAAGCTCTGGTCC 57.203 50.000 0.00 0.00 0.00 4.46
3557 4559 5.771153 TGAATTCATGCACTGAAAAGTGA 57.229 34.783 3.38 0.00 46.62 3.41
3573 4575 4.142315 CCATCACCACTGAACCATGAATTC 60.142 45.833 0.00 0.00 0.00 2.17
3658 4668 0.323302 TGTATTTGGCCAGACGCTCA 59.677 50.000 5.11 0.00 37.74 4.26
3688 4698 2.257371 GTGTCGCTCGCCACTGTA 59.743 61.111 0.00 0.00 0.00 2.74
3698 4708 3.430929 GGAAAGATGACTATGGTGTCGCT 60.431 47.826 0.00 0.00 39.64 4.93
3704 4736 4.080129 AGCATGTGGAAAGATGACTATGGT 60.080 41.667 0.00 0.00 0.00 3.55
3712 4744 2.809446 CATGCAGCATGTGGAAAGATG 58.191 47.619 25.12 0.00 39.31 2.90
3728 4808 1.198637 GCCTCAGAACACAGAACATGC 59.801 52.381 0.00 0.00 0.00 4.06
3865 4945 1.669779 CTTCAGACCTATGCAGCAAGC 59.330 52.381 0.00 0.00 45.96 4.01
3866 4946 2.286872 CCTTCAGACCTATGCAGCAAG 58.713 52.381 0.00 0.00 0.00 4.01
3872 4952 2.038295 CCATCTCCCTTCAGACCTATGC 59.962 54.545 0.00 0.00 0.00 3.14
3898 4978 2.015736 AGCAGCACCATAAGAACTCG 57.984 50.000 0.00 0.00 0.00 4.18
3947 5027 0.460311 CGGGTAGAGAACGCTTGGAT 59.540 55.000 0.00 0.00 38.85 3.41
4128 5594 6.985188 TCAGTTGATTGATAAGTACCAAGC 57.015 37.500 0.00 0.00 0.00 4.01
4158 5624 0.603569 CAGAGTAGGCACTGTCGGTT 59.396 55.000 0.00 0.00 41.52 4.44
4164 5630 0.321034 TGCAAGCAGAGTAGGCACTG 60.321 55.000 0.00 0.00 41.52 3.66
4165 5631 0.617413 ATGCAAGCAGAGTAGGCACT 59.383 50.000 0.00 0.00 46.37 4.40
4166 5632 1.936547 GTATGCAAGCAGAGTAGGCAC 59.063 52.381 0.00 0.00 37.30 5.01
4233 5727 2.098934 TGCCTTGCACCTTTATAATGCG 59.901 45.455 5.35 0.00 42.44 4.73
4275 5770 2.499289 TGTGCATGGTTTTGTTGGAACT 59.501 40.909 0.00 0.00 0.00 3.01
4278 5773 2.106566 ACTGTGCATGGTTTTGTTGGA 58.893 42.857 0.00 0.00 0.00 3.53
4279 5774 2.600470 ACTGTGCATGGTTTTGTTGG 57.400 45.000 0.00 0.00 0.00 3.77
4280 5775 2.608546 CCAACTGTGCATGGTTTTGTTG 59.391 45.455 0.00 0.00 34.79 3.33
4352 5849 8.295175 TAACATGTAAGTTAGGAGCCACTCCG 62.295 46.154 0.00 0.00 42.55 4.63
4427 5927 0.389948 CTACGTGTCCAGGGTGCTTC 60.390 60.000 0.00 0.00 0.00 3.86
4428 5928 1.119574 ACTACGTGTCCAGGGTGCTT 61.120 55.000 0.00 0.00 0.00 3.91
4435 5935 0.456312 GGCGAAGACTACGTGTCCAG 60.456 60.000 12.53 0.00 46.46 3.86
4436 5936 1.582968 GGCGAAGACTACGTGTCCA 59.417 57.895 12.53 0.00 46.46 4.02
4476 5976 7.399634 CCTTTTGGATAACTTTAGGGTGTCTA 58.600 38.462 0.00 0.00 44.07 2.59
4556 6058 5.507985 GCCATTAGTTAGGTATTACGACGGT 60.508 44.000 0.00 0.00 0.00 4.83
4557 6059 4.919754 GCCATTAGTTAGGTATTACGACGG 59.080 45.833 0.00 0.00 0.00 4.79
4586 6088 2.234908 ACTGTGATAGCTCAACCTGGTC 59.765 50.000 0.00 0.00 31.85 4.02
4681 6190 6.458210 CAACCAGCAAAGAAGGAACATAATT 58.542 36.000 0.00 0.00 0.00 1.40
4682 6191 5.567423 GCAACCAGCAAAGAAGGAACATAAT 60.567 40.000 0.00 0.00 44.79 1.28
4687 6196 2.140065 GCAACCAGCAAAGAAGGAAC 57.860 50.000 0.00 0.00 44.79 3.62
4731 6424 7.667043 TGTTCTGGTAAACATAACAGACATC 57.333 36.000 3.19 0.00 40.10 3.06
4736 6429 6.485313 TGTCCTTGTTCTGGTAAACATAACAG 59.515 38.462 0.00 0.00 43.97 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.