Multiple sequence alignment - TraesCS7A01G075300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G075300 chr7A 100.000 3389 0 0 1 3389 41049870 41046482 0.000000e+00 6259.0
1 TraesCS7A01G075300 chr4A 93.499 2338 122 15 1068 3389 661280762 661278439 0.000000e+00 3448.0
2 TraesCS7A01G075300 chr4A 92.334 2374 138 19 1041 3389 648795361 648793007 0.000000e+00 3336.0
3 TraesCS7A01G075300 chr4A 82.460 496 47 18 1 470 661281963 661281482 6.810000e-107 398.0
4 TraesCS7A01G075300 chr4A 76.768 495 86 17 1847 2316 80405 79915 2.020000e-62 250.0
5 TraesCS7A01G075300 chr4A 91.228 57 5 0 456 512 648795591 648795535 1.010000e-10 78.7
6 TraesCS7A01G075300 chr4A 91.228 57 5 0 456 512 661281463 661281407 1.010000e-10 78.7
7 TraesCS7A01G075300 chr4A 91.837 49 3 1 642 689 661281320 661281272 2.180000e-07 67.6
8 TraesCS7A01G075300 chr4A 91.667 48 3 1 643 689 648795449 648795402 7.850000e-07 65.8
9 TraesCS7A01G075300 chr7D 93.599 1406 72 8 1002 2398 41601944 41600548 0.000000e+00 2082.0
10 TraesCS7A01G075300 chr7D 92.986 998 51 13 2404 3387 41600499 41599507 0.000000e+00 1437.0
11 TraesCS7A01G075300 chr7D 87.013 385 18 13 396 748 41602234 41601850 4.070000e-109 405.0
12 TraesCS7A01G075300 chr7D 92.746 193 10 4 215 407 41603848 41603660 3.330000e-70 276.0
13 TraesCS7A01G075300 chr7D 97.163 141 4 0 1 141 41603985 41603845 4.370000e-59 239.0
14 TraesCS7A01G075300 chr1D 81.405 1253 199 23 1103 2337 26270194 26268958 0.000000e+00 992.0
15 TraesCS7A01G075300 chr1D 82.960 581 61 14 2544 3110 26268812 26268256 1.090000e-134 490.0
16 TraesCS7A01G075300 chr6D 75.590 848 174 23 1515 2340 472766653 472765817 4.100000e-104 388.0
17 TraesCS7A01G075300 chr6D 79.212 457 69 11 1887 2337 2046849 2046413 9.200000e-76 294.0
18 TraesCS7A01G075300 chr6D 81.765 340 52 6 2544 2880 2089579 2089247 3.330000e-70 276.0
19 TraesCS7A01G075300 chr6D 81.105 344 44 14 2783 3110 472763222 472762884 4.340000e-64 255.0
20 TraesCS7A01G075300 chr1B 88.103 311 37 0 1103 1413 41840576 41840886 1.490000e-98 370.0
21 TraesCS7A01G075300 chr1A 81.290 465 64 9 2544 2995 27329618 27330072 4.160000e-94 355.0
22 TraesCS7A01G075300 chr3D 84.076 314 42 7 2544 2854 138901717 138901409 2.560000e-76 296.0
23 TraesCS7A01G075300 chr3D 81.329 316 41 11 1103 1406 569132398 569132707 1.220000e-59 241.0
24 TraesCS7A01G075300 chr3D 79.365 315 60 4 2544 2856 567930744 567931055 2.050000e-52 217.0
25 TraesCS7A01G075300 chr3D 86.070 201 25 3 1113 1311 567516995 567517194 2.650000e-51 213.0
26 TraesCS7A01G075300 chr3D 85.930 199 28 0 1119 1317 569119528 569119330 2.650000e-51 213.0
27 TraesCS7A01G075300 chr3D 73.796 519 122 13 1731 2243 579399169 579399679 3.450000e-45 193.0
28 TraesCS7A01G075300 chr3D 86.139 101 10 3 2962 3062 567518295 567518391 4.620000e-19 106.0
29 TraesCS7A01G075300 chr3D 82.692 104 14 3 2962 3065 569118233 569118134 4.660000e-14 89.8
30 TraesCS7A01G075300 chr3D 95.455 44 2 0 1463 1506 564151211 564151254 1.690000e-08 71.3
31 TraesCS7A01G075300 chr3D 75.887 141 31 3 1851 1989 567148568 567148707 6.070000e-08 69.4
32 TraesCS7A01G075300 chr3D 93.182 44 3 0 1463 1506 565088309 565088352 7.850000e-07 65.8
33 TraesCS7A01G075300 chr3D 74.286 140 34 2 1851 1989 569647593 569647455 1.310000e-04 58.4
34 TraesCS7A01G075300 chr6B 73.491 928 177 45 1453 2332 4487557 4486651 1.540000e-73 287.0
35 TraesCS7A01G075300 chr6B 76.200 500 98 11 1519 2000 717906076 717905580 9.390000e-61 244.0
36 TraesCS7A01G075300 chr3B 83.279 305 47 3 2552 2854 201998556 201998254 9.260000e-71 278.0
37 TraesCS7A01G075300 chr3B 72.634 486 115 17 1731 2207 773747725 773748201 9.800000e-31 145.0
38 TraesCS7A01G075300 chr3B 79.147 211 39 5 2036 2245 773882205 773881999 1.270000e-29 141.0
39 TraesCS7A01G075300 chr3B 80.208 96 10 5 1472 1558 753561328 753561423 2.820000e-06 63.9
40 TraesCS7A01G075300 chr3B 94.872 39 2 0 1468 1506 751943140 751943178 1.020000e-05 62.1
41 TraesCS7A01G075300 chr3B 72.558 215 47 11 1780 1989 755250643 755250436 3.650000e-05 60.2
42 TraesCS7A01G075300 chr4B 76.970 495 85 17 1847 2316 121722 121232 4.340000e-64 255.0
43 TraesCS7A01G075300 chr3A 88.000 200 24 0 1103 1302 66914219 66914020 1.570000e-58 237.0
44 TraesCS7A01G075300 chr3A 77.838 185 29 10 1463 1641 699533663 699533841 1.660000e-18 104.0
45 TraesCS7A01G075300 chr3A 85.000 100 11 3 2963 3062 701644744 701644839 7.740000e-17 99.0
46 TraesCS7A01G075300 chr3A 94.737 38 2 0 1469 1506 698739990 698740027 3.650000e-05 60.2
47 TraesCS7A01G075300 chr2A 75.667 300 45 20 2821 3102 45073888 45074177 1.280000e-24 124.0
48 TraesCS7A01G075300 chrUn 94.872 39 1 1 149 186 207748974 207749012 3.650000e-05 60.2
49 TraesCS7A01G075300 chrUn 94.872 39 1 1 149 186 207770898 207770936 3.650000e-05 60.2
50 TraesCS7A01G075300 chr7B 100.000 28 0 0 1851 1878 534821813 534821786 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G075300 chr7A 41046482 41049870 3388 True 6259.000000 6259 100.0000 1 3389 1 chr7A.!!$R1 3388
1 TraesCS7A01G075300 chr4A 648793007 648795591 2584 True 1160.166667 3336 91.7430 456 3389 3 chr4A.!!$R2 2933
2 TraesCS7A01G075300 chr4A 661278439 661281963 3524 True 998.075000 3448 89.7560 1 3389 4 chr4A.!!$R3 3388
3 TraesCS7A01G075300 chr7D 41599507 41603985 4478 True 887.800000 2082 92.7014 1 3387 5 chr7D.!!$R1 3386
4 TraesCS7A01G075300 chr1D 26268256 26270194 1938 True 741.000000 992 82.1825 1103 3110 2 chr1D.!!$R1 2007
5 TraesCS7A01G075300 chr6D 472762884 472766653 3769 True 321.500000 388 78.3475 1515 3110 2 chr6D.!!$R3 1595
6 TraesCS7A01G075300 chr6B 4486651 4487557 906 True 287.000000 287 73.4910 1453 2332 1 chr6B.!!$R1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 2210 0.030773 TGCACATCCGCGAGATCTAC 59.969 55.0 8.23 0.91 30.59 2.59 F
967 2484 0.108615 ATTCTGCGAGAACTGACCGG 60.109 55.0 0.00 0.00 37.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1729 3789 1.019805 GGCTACCACGGAACAGAAGC 61.020 60.000 0.00 0.0 0.0 3.86 R
2735 6956 1.078848 AGCTGAGCCGGACAATGAC 60.079 57.895 5.05 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 175 5.231702 TGTAATTTGGACCGTCCTTAAGT 57.768 39.130 18.54 13.38 37.46 2.24
205 228 9.651913 AAAATAAAATGTATGCACCCAACTTAG 57.348 29.630 0.00 0.00 0.00 2.18
206 229 7.954666 ATAAAATGTATGCACCCAACTTAGT 57.045 32.000 0.00 0.00 0.00 2.24
207 230 6.664428 AAAATGTATGCACCCAACTTAGTT 57.336 33.333 0.00 0.00 0.00 2.24
208 231 5.643379 AATGTATGCACCCAACTTAGTTG 57.357 39.130 17.37 17.37 42.49 3.16
250 273 0.973632 AAATTGGGGTTTCTTCCGCC 59.026 50.000 0.00 0.00 39.28 6.13
437 1901 2.129823 AATTACTGGATACGCCGTCG 57.870 50.000 0.00 0.00 40.66 5.12
526 2023 0.947180 GGAAACCAGAGTACGCGCAA 60.947 55.000 5.73 0.00 0.00 4.85
572 2069 2.032620 ACTGGTTGTCGTTGAGAGAGT 58.967 47.619 0.00 0.00 0.00 3.24
575 2072 3.869065 TGGTTGTCGTTGAGAGAGTTTT 58.131 40.909 0.00 0.00 0.00 2.43
633 2150 6.340962 TCTTGAGAAATACCGTTGAGAGAA 57.659 37.500 0.00 0.00 0.00 2.87
637 2154 4.822026 AGAAATACCGTTGAGAGAAGTGG 58.178 43.478 0.00 0.00 0.00 4.00
638 2155 3.611766 AATACCGTTGAGAGAAGTGGG 57.388 47.619 0.00 0.00 0.00 4.61
639 2156 0.606604 TACCGTTGAGAGAAGTGGGC 59.393 55.000 0.00 0.00 0.00 5.36
641 2158 0.250295 CCGTTGAGAGAAGTGGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
642 2159 1.151668 CGTTGAGAGAAGTGGGCAAG 58.848 55.000 0.00 0.00 0.00 4.01
643 2160 0.877743 GTTGAGAGAAGTGGGCAAGC 59.122 55.000 0.00 0.00 0.00 4.01
644 2161 0.250901 TTGAGAGAAGTGGGCAAGCC 60.251 55.000 1.52 1.52 0.00 4.35
645 2162 1.376466 GAGAGAAGTGGGCAAGCCA 59.624 57.895 13.87 0.00 37.98 4.75
646 2163 0.250901 GAGAGAAGTGGGCAAGCCAA 60.251 55.000 13.87 0.00 37.98 4.52
647 2164 0.251077 AGAGAAGTGGGCAAGCCAAG 60.251 55.000 13.87 0.00 37.98 3.61
648 2165 1.871126 GAGAAGTGGGCAAGCCAAGC 61.871 60.000 13.87 2.20 37.98 4.01
661 2178 4.659172 CAAGCCCAGCCCGTTGGA 62.659 66.667 0.00 0.00 40.87 3.53
662 2179 4.351054 AAGCCCAGCCCGTTGGAG 62.351 66.667 0.00 0.00 40.87 3.86
664 2181 4.785453 GCCCAGCCCGTTGGAGAG 62.785 72.222 0.00 0.00 40.87 3.20
665 2182 4.785453 CCCAGCCCGTTGGAGAGC 62.785 72.222 0.00 0.00 40.87 4.09
666 2183 4.020617 CCAGCCCGTTGGAGAGCA 62.021 66.667 0.00 0.00 40.87 4.26
667 2184 2.435586 CAGCCCGTTGGAGAGCAG 60.436 66.667 0.00 0.00 0.00 4.24
668 2185 4.400961 AGCCCGTTGGAGAGCAGC 62.401 66.667 0.00 0.00 0.00 5.25
671 2188 4.069232 CCGTTGGAGAGCAGCCGA 62.069 66.667 0.00 0.00 0.00 5.54
672 2189 2.048222 CGTTGGAGAGCAGCCGAA 60.048 61.111 0.00 0.00 0.00 4.30
673 2190 1.448540 CGTTGGAGAGCAGCCGAAT 60.449 57.895 0.00 0.00 0.00 3.34
674 2191 1.021390 CGTTGGAGAGCAGCCGAATT 61.021 55.000 0.00 0.00 0.00 2.17
675 2192 0.449388 GTTGGAGAGCAGCCGAATTG 59.551 55.000 0.00 0.00 0.00 2.32
676 2193 1.308069 TTGGAGAGCAGCCGAATTGC 61.308 55.000 0.00 0.00 41.83 3.56
677 2194 1.746615 GGAGAGCAGCCGAATTGCA 60.747 57.895 8.15 0.00 43.92 4.08
678 2195 1.427020 GAGAGCAGCCGAATTGCAC 59.573 57.895 8.15 2.72 43.92 4.57
679 2196 1.300971 GAGAGCAGCCGAATTGCACA 61.301 55.000 8.15 0.00 43.92 4.57
680 2197 0.679002 AGAGCAGCCGAATTGCACAT 60.679 50.000 8.15 0.00 43.92 3.21
681 2198 0.248377 GAGCAGCCGAATTGCACATC 60.248 55.000 8.15 0.00 43.92 3.06
682 2199 1.226773 GCAGCCGAATTGCACATCC 60.227 57.895 0.00 0.00 41.17 3.51
683 2200 1.063006 CAGCCGAATTGCACATCCG 59.937 57.895 0.00 0.00 0.00 4.18
684 2201 2.278142 GCCGAATTGCACATCCGC 60.278 61.111 0.00 0.00 0.00 5.54
685 2202 2.023181 CCGAATTGCACATCCGCG 59.977 61.111 0.00 0.00 33.35 6.46
686 2203 2.460275 CCGAATTGCACATCCGCGA 61.460 57.895 8.23 0.00 33.35 5.87
687 2204 1.011904 CGAATTGCACATCCGCGAG 60.012 57.895 8.23 0.00 33.35 5.03
688 2205 1.420641 CGAATTGCACATCCGCGAGA 61.421 55.000 8.23 3.13 33.35 4.04
689 2206 0.940126 GAATTGCACATCCGCGAGAT 59.060 50.000 8.23 5.89 34.66 2.75
690 2207 0.940126 AATTGCACATCCGCGAGATC 59.060 50.000 8.23 0.00 30.59 2.75
691 2208 0.105593 ATTGCACATCCGCGAGATCT 59.894 50.000 8.23 0.00 30.59 2.75
692 2209 0.744281 TTGCACATCCGCGAGATCTA 59.256 50.000 8.23 0.00 30.59 1.98
693 2210 0.030773 TGCACATCCGCGAGATCTAC 59.969 55.000 8.23 0.91 30.59 2.59
694 2211 0.664767 GCACATCCGCGAGATCTACC 60.665 60.000 8.23 0.00 30.59 3.18
695 2212 0.955178 CACATCCGCGAGATCTACCT 59.045 55.000 8.23 0.00 30.59 3.08
696 2213 1.068885 CACATCCGCGAGATCTACCTC 60.069 57.143 8.23 0.00 30.59 3.85
697 2214 1.202830 ACATCCGCGAGATCTACCTCT 60.203 52.381 8.23 0.00 30.59 3.69
698 2215 1.466950 CATCCGCGAGATCTACCTCTC 59.533 57.143 8.23 0.00 38.64 3.20
699 2216 0.250381 TCCGCGAGATCTACCTCTCC 60.250 60.000 8.23 0.00 38.78 3.71
700 2217 1.570347 CCGCGAGATCTACCTCTCCG 61.570 65.000 8.23 0.00 38.78 4.63
701 2218 1.577421 GCGAGATCTACCTCTCCGC 59.423 63.158 6.91 6.91 38.78 5.54
702 2219 1.858372 GCGAGATCTACCTCTCCGCC 61.858 65.000 10.63 0.00 38.78 6.13
703 2220 1.570347 CGAGATCTACCTCTCCGCCG 61.570 65.000 0.00 0.00 38.78 6.46
704 2221 1.858372 GAGATCTACCTCTCCGCCGC 61.858 65.000 0.00 0.00 36.47 6.53
705 2222 1.899534 GATCTACCTCTCCGCCGCT 60.900 63.158 0.00 0.00 0.00 5.52
706 2223 2.136196 GATCTACCTCTCCGCCGCTG 62.136 65.000 0.00 0.00 0.00 5.18
707 2224 4.577246 CTACCTCTCCGCCGCTGC 62.577 72.222 0.00 0.00 0.00 5.25
720 2237 3.225798 GCTGCCACAAGCCCACAA 61.226 61.111 0.00 0.00 42.71 3.33
721 2238 2.730094 CTGCCACAAGCCCACAAC 59.270 61.111 0.00 0.00 42.71 3.32
722 2239 1.829533 CTGCCACAAGCCCACAACT 60.830 57.895 0.00 0.00 42.71 3.16
723 2240 1.799258 CTGCCACAAGCCCACAACTC 61.799 60.000 0.00 0.00 42.71 3.01
724 2241 2.564721 GCCACAAGCCCACAACTCC 61.565 63.158 0.00 0.00 34.35 3.85
725 2242 1.152777 CCACAAGCCCACAACTCCA 60.153 57.895 0.00 0.00 0.00 3.86
726 2243 0.540365 CCACAAGCCCACAACTCCAT 60.540 55.000 0.00 0.00 0.00 3.41
727 2244 1.271871 CCACAAGCCCACAACTCCATA 60.272 52.381 0.00 0.00 0.00 2.74
728 2245 2.086869 CACAAGCCCACAACTCCATAG 58.913 52.381 0.00 0.00 0.00 2.23
729 2246 1.705186 ACAAGCCCACAACTCCATAGT 59.295 47.619 0.00 0.00 37.65 2.12
730 2247 2.290323 ACAAGCCCACAACTCCATAGTC 60.290 50.000 0.00 0.00 33.75 2.59
731 2248 0.912486 AGCCCACAACTCCATAGTCC 59.088 55.000 0.00 0.00 33.75 3.85
732 2249 0.912486 GCCCACAACTCCATAGTCCT 59.088 55.000 0.00 0.00 33.75 3.85
733 2250 1.407437 GCCCACAACTCCATAGTCCTG 60.407 57.143 0.00 0.00 33.75 3.86
734 2251 1.210478 CCCACAACTCCATAGTCCTGG 59.790 57.143 0.00 0.00 33.75 4.45
735 2252 1.407437 CCACAACTCCATAGTCCTGGC 60.407 57.143 0.00 0.00 33.75 4.85
736 2253 0.537188 ACAACTCCATAGTCCTGGCG 59.463 55.000 0.00 0.00 33.75 5.69
737 2254 0.824109 CAACTCCATAGTCCTGGCGA 59.176 55.000 0.00 0.00 33.75 5.54
738 2255 1.115467 AACTCCATAGTCCTGGCGAG 58.885 55.000 0.00 0.00 33.75 5.03
739 2256 0.259065 ACTCCATAGTCCTGGCGAGA 59.741 55.000 0.00 0.00 36.16 4.04
740 2257 1.133325 ACTCCATAGTCCTGGCGAGAT 60.133 52.381 0.00 0.00 36.16 2.75
741 2258 1.543802 CTCCATAGTCCTGGCGAGATC 59.456 57.143 0.00 0.00 36.16 2.75
742 2259 1.145945 TCCATAGTCCTGGCGAGATCT 59.854 52.381 0.00 0.00 36.16 2.75
743 2260 2.375509 TCCATAGTCCTGGCGAGATCTA 59.624 50.000 0.00 0.00 36.16 1.98
744 2261 2.490115 CCATAGTCCTGGCGAGATCTAC 59.510 54.545 0.00 0.00 0.00 2.59
745 2262 2.273538 TAGTCCTGGCGAGATCTACC 57.726 55.000 7.23 7.23 0.00 3.18
746 2263 0.553819 AGTCCTGGCGAGATCTACCT 59.446 55.000 13.90 0.00 0.00 3.08
747 2264 0.955905 GTCCTGGCGAGATCTACCTC 59.044 60.000 13.90 0.00 0.00 3.85
748 2265 0.847373 TCCTGGCGAGATCTACCTCT 59.153 55.000 13.90 0.00 0.00 3.69
749 2266 1.202830 TCCTGGCGAGATCTACCTCTC 60.203 57.143 13.90 0.00 38.64 3.20
750 2267 1.243902 CTGGCGAGATCTACCTCTCC 58.756 60.000 13.90 0.00 38.78 3.71
751 2268 0.551396 TGGCGAGATCTACCTCTCCA 59.449 55.000 13.90 0.00 43.50 3.86
752 2269 1.243902 GGCGAGATCTACCTCTCCAG 58.756 60.000 0.00 0.00 38.78 3.86
753 2270 1.243902 GCGAGATCTACCTCTCCAGG 58.756 60.000 0.00 0.00 46.87 4.45
754 2271 1.904287 CGAGATCTACCTCTCCAGGG 58.096 60.000 0.00 0.00 45.53 4.45
755 2272 1.144093 CGAGATCTACCTCTCCAGGGT 59.856 57.143 0.00 0.00 45.53 4.34
756 2273 2.423660 CGAGATCTACCTCTCCAGGGTT 60.424 54.545 0.00 0.00 45.53 4.11
757 2274 3.648739 GAGATCTACCTCTCCAGGGTTT 58.351 50.000 0.00 0.00 45.53 3.27
758 2275 4.034410 GAGATCTACCTCTCCAGGGTTTT 58.966 47.826 0.00 0.00 45.53 2.43
759 2276 4.439860 AGATCTACCTCTCCAGGGTTTTT 58.560 43.478 0.00 0.00 45.53 1.94
760 2277 5.600749 AGATCTACCTCTCCAGGGTTTTTA 58.399 41.667 0.00 0.00 45.53 1.52
761 2278 5.425862 AGATCTACCTCTCCAGGGTTTTTAC 59.574 44.000 0.00 0.00 45.53 2.01
762 2279 3.842436 TCTACCTCTCCAGGGTTTTTACC 59.158 47.826 0.00 0.00 45.53 2.85
763 2280 2.714808 ACCTCTCCAGGGTTTTTACCT 58.285 47.619 0.00 0.00 45.53 3.08
764 2281 3.061369 ACCTCTCCAGGGTTTTTACCTT 58.939 45.455 0.00 0.00 45.53 3.50
765 2282 4.245308 ACCTCTCCAGGGTTTTTACCTTA 58.755 43.478 0.00 0.00 45.53 2.69
766 2283 4.666431 ACCTCTCCAGGGTTTTTACCTTAA 59.334 41.667 0.00 0.00 45.53 1.85
767 2284 5.315109 ACCTCTCCAGGGTTTTTACCTTAAT 59.685 40.000 0.00 0.00 45.53 1.40
768 2285 6.183361 ACCTCTCCAGGGTTTTTACCTTAATT 60.183 38.462 0.00 0.00 45.53 1.40
769 2286 7.018851 ACCTCTCCAGGGTTTTTACCTTAATTA 59.981 37.037 0.00 0.00 45.53 1.40
770 2287 7.338703 CCTCTCCAGGGTTTTTACCTTAATTAC 59.661 40.741 0.00 0.00 35.78 1.89
771 2288 7.992295 TCTCCAGGGTTTTTACCTTAATTACT 58.008 34.615 0.00 0.00 35.78 2.24
772 2289 7.886446 TCTCCAGGGTTTTTACCTTAATTACTG 59.114 37.037 0.00 0.00 35.78 2.74
773 2290 6.949463 TCCAGGGTTTTTACCTTAATTACTGG 59.051 38.462 0.00 0.00 35.78 4.00
774 2291 6.949463 CCAGGGTTTTTACCTTAATTACTGGA 59.051 38.462 9.86 0.00 35.78 3.86
775 2292 7.618117 CCAGGGTTTTTACCTTAATTACTGGAT 59.382 37.037 9.86 0.00 35.78 3.41
776 2293 9.689501 CAGGGTTTTTACCTTAATTACTGGATA 57.310 33.333 9.86 0.00 35.78 2.59
779 2296 9.961265 GGTTTTTACCTTAATTACTGGATATGC 57.039 33.333 9.86 0.00 0.00 3.14
780 2297 9.961265 GTTTTTACCTTAATTACTGGATATGCC 57.039 33.333 9.86 0.00 37.10 4.40
781 2298 7.972832 TTTACCTTAATTACTGGATATGCCG 57.027 36.000 9.86 0.00 40.66 5.69
782 2299 5.562298 ACCTTAATTACTGGATATGCCGT 57.438 39.130 9.86 0.00 40.66 5.68
783 2300 5.548406 ACCTTAATTACTGGATATGCCGTC 58.452 41.667 9.86 0.00 40.66 4.79
784 2301 5.071250 ACCTTAATTACTGGATATGCCGTCA 59.929 40.000 9.86 0.00 40.66 4.35
785 2302 6.173339 CCTTAATTACTGGATATGCCGTCAT 58.827 40.000 0.00 0.00 40.66 3.06
786 2303 6.655003 CCTTAATTACTGGATATGCCGTCATT 59.345 38.462 0.00 0.00 40.66 2.57
787 2304 5.947228 AATTACTGGATATGCCGTCATTG 57.053 39.130 0.00 0.00 40.66 2.82
788 2305 4.415881 TTACTGGATATGCCGTCATTGT 57.584 40.909 0.00 0.00 40.66 2.71
789 2306 3.281727 ACTGGATATGCCGTCATTGTT 57.718 42.857 0.00 0.00 40.66 2.83
790 2307 4.415881 ACTGGATATGCCGTCATTGTTA 57.584 40.909 0.00 0.00 40.66 2.41
791 2308 4.776349 ACTGGATATGCCGTCATTGTTAA 58.224 39.130 0.00 0.00 40.66 2.01
792 2309 5.189928 ACTGGATATGCCGTCATTGTTAAA 58.810 37.500 0.00 0.00 40.66 1.52
793 2310 5.827797 ACTGGATATGCCGTCATTGTTAAAT 59.172 36.000 0.00 0.00 40.66 1.40
794 2311 6.321181 ACTGGATATGCCGTCATTGTTAAATT 59.679 34.615 0.00 0.00 40.66 1.82
795 2312 7.106439 TGGATATGCCGTCATTGTTAAATTT 57.894 32.000 0.00 0.00 40.66 1.82
796 2313 8.226819 TGGATATGCCGTCATTGTTAAATTTA 57.773 30.769 0.00 0.00 40.66 1.40
797 2314 8.687242 TGGATATGCCGTCATTGTTAAATTTAA 58.313 29.630 6.54 6.54 40.66 1.52
798 2315 9.691362 GGATATGCCGTCATTGTTAAATTTAAT 57.309 29.630 13.54 0.00 34.22 1.40
802 2319 7.513968 TGCCGTCATTGTTAAATTTAATTTGC 58.486 30.769 13.54 6.54 33.82 3.68
803 2320 7.171508 TGCCGTCATTGTTAAATTTAATTTGCA 59.828 29.630 13.54 8.75 33.82 4.08
804 2321 7.687757 GCCGTCATTGTTAAATTTAATTTGCAG 59.312 33.333 13.54 8.61 33.82 4.41
805 2322 7.687757 CCGTCATTGTTAAATTTAATTTGCAGC 59.312 33.333 13.54 0.49 33.82 5.25
806 2323 8.434661 CGTCATTGTTAAATTTAATTTGCAGCT 58.565 29.630 13.54 0.00 33.82 4.24
809 2326 9.332301 CATTGTTAAATTTAATTTGCAGCTTGG 57.668 29.630 13.54 0.00 33.82 3.61
810 2327 8.668510 TTGTTAAATTTAATTTGCAGCTTGGA 57.331 26.923 13.54 0.00 33.82 3.53
811 2328 8.845413 TGTTAAATTTAATTTGCAGCTTGGAT 57.155 26.923 13.54 0.00 33.82 3.41
812 2329 8.719648 TGTTAAATTTAATTTGCAGCTTGGATG 58.280 29.630 13.54 0.00 33.82 3.51
813 2330 8.720562 GTTAAATTTAATTTGCAGCTTGGATGT 58.279 29.630 13.54 0.00 33.82 3.06
814 2331 6.973229 AATTTAATTTGCAGCTTGGATGTC 57.027 33.333 0.00 0.00 0.00 3.06
815 2332 5.465532 TTTAATTTGCAGCTTGGATGTCA 57.534 34.783 0.00 0.00 0.00 3.58
816 2333 5.664294 TTAATTTGCAGCTTGGATGTCAT 57.336 34.783 0.00 0.00 0.00 3.06
817 2334 4.546829 AATTTGCAGCTTGGATGTCATT 57.453 36.364 0.00 0.00 0.00 2.57
818 2335 3.306917 TTTGCAGCTTGGATGTCATTG 57.693 42.857 0.00 0.00 0.00 2.82
819 2336 0.528924 TGCAGCTTGGATGTCATTGC 59.471 50.000 0.00 0.00 0.00 3.56
820 2337 0.815734 GCAGCTTGGATGTCATTGCT 59.184 50.000 0.00 0.00 36.48 3.91
821 2338 2.019249 GCAGCTTGGATGTCATTGCTA 58.981 47.619 0.00 0.00 35.08 3.49
822 2339 2.223433 GCAGCTTGGATGTCATTGCTAC 60.223 50.000 0.00 0.00 35.08 3.58
823 2340 3.011818 CAGCTTGGATGTCATTGCTACA 58.988 45.455 0.00 0.00 35.08 2.74
824 2341 3.441222 CAGCTTGGATGTCATTGCTACAA 59.559 43.478 0.00 0.00 35.08 2.41
825 2342 4.081406 AGCTTGGATGTCATTGCTACAAA 58.919 39.130 0.00 0.00 35.08 2.83
826 2343 4.082571 AGCTTGGATGTCATTGCTACAAAC 60.083 41.667 0.00 0.00 35.08 2.93
827 2344 4.082571 GCTTGGATGTCATTGCTACAAACT 60.083 41.667 0.00 0.00 0.00 2.66
828 2345 5.565439 GCTTGGATGTCATTGCTACAAACTT 60.565 40.000 0.00 0.00 0.00 2.66
829 2346 6.403866 TTGGATGTCATTGCTACAAACTTT 57.596 33.333 0.00 0.00 0.00 2.66
830 2347 6.403866 TGGATGTCATTGCTACAAACTTTT 57.596 33.333 0.00 0.00 0.00 2.27
831 2348 6.446318 TGGATGTCATTGCTACAAACTTTTC 58.554 36.000 0.00 0.00 0.00 2.29
832 2349 6.040278 TGGATGTCATTGCTACAAACTTTTCA 59.960 34.615 0.00 0.00 0.00 2.69
833 2350 7.092716 GGATGTCATTGCTACAAACTTTTCAT 58.907 34.615 0.00 0.00 0.00 2.57
834 2351 7.062605 GGATGTCATTGCTACAAACTTTTCATG 59.937 37.037 0.00 0.00 0.00 3.07
835 2352 6.804677 TGTCATTGCTACAAACTTTTCATGT 58.195 32.000 0.00 0.00 0.00 3.21
836 2353 6.917477 TGTCATTGCTACAAACTTTTCATGTC 59.083 34.615 0.00 0.00 0.00 3.06
837 2354 7.141363 GTCATTGCTACAAACTTTTCATGTCT 58.859 34.615 0.00 0.00 0.00 3.41
838 2355 7.649306 GTCATTGCTACAAACTTTTCATGTCTT 59.351 33.333 0.00 0.00 0.00 3.01
839 2356 8.845227 TCATTGCTACAAACTTTTCATGTCTTA 58.155 29.630 0.00 0.00 0.00 2.10
840 2357 8.905702 CATTGCTACAAACTTTTCATGTCTTAC 58.094 33.333 0.00 0.00 0.00 2.34
841 2358 7.561021 TGCTACAAACTTTTCATGTCTTACA 57.439 32.000 0.00 0.00 0.00 2.41
842 2359 8.165239 TGCTACAAACTTTTCATGTCTTACAT 57.835 30.769 0.00 0.00 39.91 2.29
843 2360 8.629158 TGCTACAAACTTTTCATGTCTTACATT 58.371 29.630 0.00 0.00 36.53 2.71
877 2394 3.775661 AAATAAAATTGGAGGCGGTCG 57.224 42.857 0.00 0.00 0.00 4.79
885 2402 1.218316 GGAGGCGGTCGTTGAGATT 59.782 57.895 0.00 0.00 0.00 2.40
887 2404 1.557651 GAGGCGGTCGTTGAGATTAC 58.442 55.000 0.00 0.00 0.00 1.89
889 2406 1.135083 AGGCGGTCGTTGAGATTACTG 60.135 52.381 0.00 0.00 0.00 2.74
890 2407 1.278238 GCGGTCGTTGAGATTACTGG 58.722 55.000 0.00 0.00 0.00 4.00
891 2408 1.278238 CGGTCGTTGAGATTACTGGC 58.722 55.000 0.00 0.00 0.00 4.85
892 2409 1.653151 GGTCGTTGAGATTACTGGCC 58.347 55.000 0.00 0.00 0.00 5.36
893 2410 1.066430 GGTCGTTGAGATTACTGGCCA 60.066 52.381 4.71 4.71 0.00 5.36
895 2412 2.094182 GTCGTTGAGATTACTGGCCAGA 60.094 50.000 39.19 18.86 0.00 3.86
896 2413 2.166459 TCGTTGAGATTACTGGCCAGAG 59.834 50.000 39.19 15.82 0.00 3.35
897 2414 2.093973 CGTTGAGATTACTGGCCAGAGT 60.094 50.000 39.19 22.73 0.00 3.24
898 2415 3.130516 CGTTGAGATTACTGGCCAGAGTA 59.869 47.826 39.19 20.10 0.00 2.59
899 2416 4.434520 GTTGAGATTACTGGCCAGAGTAC 58.565 47.826 39.19 24.17 0.00 2.73
901 2418 1.409427 AGATTACTGGCCAGAGTACGC 59.591 52.381 39.19 20.68 0.00 4.42
903 2420 2.552585 TTACTGGCCAGAGTACGCGC 62.553 60.000 39.19 0.00 0.00 6.86
904 2421 4.435436 CTGGCCAGAGTACGCGCA 62.435 66.667 29.88 0.00 0.00 6.09
905 2422 4.435436 TGGCCAGAGTACGCGCAG 62.435 66.667 5.73 2.42 0.00 5.18
906 2423 4.129737 GGCCAGAGTACGCGCAGA 62.130 66.667 5.73 0.00 0.00 4.26
907 2424 2.126071 GCCAGAGTACGCGCAGAA 60.126 61.111 5.73 0.00 0.00 3.02
908 2425 1.736645 GCCAGAGTACGCGCAGAAA 60.737 57.895 5.73 0.00 0.00 2.52
909 2426 1.289109 GCCAGAGTACGCGCAGAAAA 61.289 55.000 5.73 0.00 0.00 2.29
910 2427 1.359848 CCAGAGTACGCGCAGAAAAT 58.640 50.000 5.73 0.00 0.00 1.82
911 2428 1.732259 CCAGAGTACGCGCAGAAAATT 59.268 47.619 5.73 0.00 0.00 1.82
912 2429 2.159627 CCAGAGTACGCGCAGAAAATTT 59.840 45.455 5.73 0.00 0.00 1.82
913 2430 3.364964 CCAGAGTACGCGCAGAAAATTTT 60.365 43.478 5.73 2.28 0.00 1.82
914 2431 3.599514 CAGAGTACGCGCAGAAAATTTTG 59.400 43.478 8.47 0.00 0.00 2.44
915 2432 3.250040 AGAGTACGCGCAGAAAATTTTGT 59.750 39.130 8.47 0.47 0.00 2.83
916 2433 3.959943 AGTACGCGCAGAAAATTTTGTT 58.040 36.364 8.47 0.00 0.00 2.83
917 2434 4.356289 AGTACGCGCAGAAAATTTTGTTT 58.644 34.783 8.47 0.00 0.00 2.83
918 2435 4.801516 AGTACGCGCAGAAAATTTTGTTTT 59.198 33.333 8.47 0.00 0.00 2.43
919 2436 4.176813 ACGCGCAGAAAATTTTGTTTTC 57.823 36.364 8.47 5.38 38.36 2.29
920 2437 3.862845 ACGCGCAGAAAATTTTGTTTTCT 59.137 34.783 8.47 9.33 46.29 2.52
928 2445 7.307493 AGAAAATTTTGTTTTCTGCCAGAAC 57.693 32.000 6.65 0.00 44.39 3.01
929 2446 7.105588 AGAAAATTTTGTTTTCTGCCAGAACT 58.894 30.769 6.65 0.00 44.39 3.01
930 2447 6.667007 AAATTTTGTTTTCTGCCAGAACTG 57.333 33.333 6.65 0.00 33.26 3.16
931 2448 5.596836 ATTTTGTTTTCTGCCAGAACTGA 57.403 34.783 6.65 0.00 33.26 3.41
959 2476 5.749596 TTTTTGAGACAATTCTGCGAGAA 57.250 34.783 0.00 1.85 38.78 2.87
960 2477 4.732285 TTTGAGACAATTCTGCGAGAAC 57.268 40.909 1.44 0.00 37.00 3.01
961 2478 3.667497 TGAGACAATTCTGCGAGAACT 57.333 42.857 1.44 0.00 37.00 3.01
962 2479 3.320626 TGAGACAATTCTGCGAGAACTG 58.679 45.455 6.01 6.01 37.46 3.16
963 2480 3.005791 TGAGACAATTCTGCGAGAACTGA 59.994 43.478 12.22 0.00 33.65 3.41
964 2481 3.321497 AGACAATTCTGCGAGAACTGAC 58.679 45.455 12.22 7.61 33.65 3.51
965 2482 2.413453 GACAATTCTGCGAGAACTGACC 59.587 50.000 12.22 3.23 33.65 4.02
966 2483 1.391485 CAATTCTGCGAGAACTGACCG 59.609 52.381 2.48 0.00 33.65 4.79
967 2484 0.108615 ATTCTGCGAGAACTGACCGG 60.109 55.000 0.00 0.00 37.00 5.28
968 2485 1.461091 TTCTGCGAGAACTGACCGGT 61.461 55.000 6.92 6.92 0.00 5.28
969 2486 1.006102 CTGCGAGAACTGACCGGTT 60.006 57.895 9.42 0.00 0.00 4.44
971 2488 1.300697 GCGAGAACTGACCGGTTGT 60.301 57.895 9.42 8.64 0.00 3.32
972 2489 1.282930 GCGAGAACTGACCGGTTGTC 61.283 60.000 9.42 3.96 44.72 3.18
989 2506 1.228429 TCGTTGAAAGGGGCCAAGG 60.228 57.895 4.39 0.00 0.00 3.61
990 2507 1.228429 CGTTGAAAGGGGCCAAGGA 60.228 57.895 4.39 0.00 31.91 3.36
1022 2541 0.248289 GCAGCCCAAATTGCACATCT 59.752 50.000 0.00 0.00 40.02 2.90
1024 2543 0.899720 AGCCCAAATTGCACATCTGG 59.100 50.000 0.00 0.00 0.00 3.86
1038 2587 1.610327 TCTGGGAGACGAGAGGGAG 59.390 63.158 0.00 0.00 40.57 4.30
1039 2588 1.454847 CTGGGAGACGAGAGGGAGG 60.455 68.421 0.00 0.00 38.67 4.30
1079 3100 1.136329 AACTCCACCACTCCTGGCAT 61.136 55.000 0.00 0.00 42.08 4.40
1139 3160 2.184167 GGAGCGACTCCTCTCCTCG 61.184 68.421 15.90 0.00 46.41 4.63
1163 3184 2.827190 TCCCGGACGAGATCACCG 60.827 66.667 0.73 11.67 45.24 4.94
1179 3200 2.634777 CGTCTCGGAGATCCTCGC 59.365 66.667 11.46 0.00 33.89 5.03
1180 3201 1.890041 CGTCTCGGAGATCCTCGCT 60.890 63.158 11.46 0.00 33.89 4.93
1318 3339 3.914605 CTGCAGCCACAGCGACGTA 62.915 63.158 0.00 0.00 46.67 3.57
1414 3441 2.923177 CGTCGCGCGACTGAAAACA 61.923 57.895 46.85 19.01 44.77 2.83
1415 3442 1.436606 GTCGCGCGACTGAAAACAC 60.437 57.895 45.56 23.97 41.57 3.32
1417 3444 2.251371 GCGCGACTGAAAACACCC 59.749 61.111 12.10 0.00 0.00 4.61
1605 3653 3.084191 GGTTGTACCCTCACCCTCT 57.916 57.895 0.00 0.00 30.04 3.69
1723 3783 2.671070 CCTGATCCGTTGGCTGGT 59.329 61.111 0.00 0.00 0.00 4.00
1790 3850 2.984471 CGGATAATGGTATTCGACACCG 59.016 50.000 10.10 0.00 40.65 4.94
1992 4058 2.721167 TTGCCGAGATCAGGGACCG 61.721 63.158 6.27 0.00 0.00 4.79
2259 4335 5.483811 TGATTATGTTGTCAACGCTTAGGA 58.516 37.500 11.03 0.00 0.00 2.94
2298 5995 4.333926 GTGTTTCTTATTGGCCTAGCTCTG 59.666 45.833 3.32 0.00 0.00 3.35
2445 6323 2.380064 TTTGGGTTGAAGTGGCTGAT 57.620 45.000 0.00 0.00 0.00 2.90
2491 6396 0.329261 TCATTTGGGTCAGCCTCTGG 59.671 55.000 0.00 0.00 34.45 3.86
2494 6399 0.850100 TTTGGGTCAGCCTCTGGAAA 59.150 50.000 0.00 0.00 34.45 3.13
2495 6400 1.075601 TTGGGTCAGCCTCTGGAAAT 58.924 50.000 0.00 0.00 34.45 2.17
2559 6771 5.069516 ACTCAATAATGGTTCCATTGCATCC 59.930 40.000 22.61 0.00 37.27 3.51
2633 6851 5.301555 TCGGTGTTGTATCAATCACTTCAA 58.698 37.500 11.55 0.00 0.00 2.69
2651 6869 5.770162 ACTTCAATTTAGCTGCTAACCACTT 59.230 36.000 20.95 9.95 0.00 3.16
2652 6870 6.265422 ACTTCAATTTAGCTGCTAACCACTTT 59.735 34.615 20.95 7.93 0.00 2.66
2653 6871 7.447238 ACTTCAATTTAGCTGCTAACCACTTTA 59.553 33.333 20.95 5.93 0.00 1.85
2655 6873 7.761409 TCAATTTAGCTGCTAACCACTTTATG 58.239 34.615 20.95 11.06 0.00 1.90
2656 6874 7.393234 TCAATTTAGCTGCTAACCACTTTATGT 59.607 33.333 20.95 0.82 0.00 2.29
2698 6919 6.535508 GGTGTTTGATCTTAAGATAAGCTCGT 59.464 38.462 17.94 0.00 34.37 4.18
3062 7425 6.622833 AATGAAGAATTGCCTTGGTTTTTG 57.377 33.333 0.00 0.00 0.00 2.44
3069 7432 5.606348 ATTGCCTTGGTTTTTGTTGAGTA 57.394 34.783 0.00 0.00 0.00 2.59
3076 7439 7.684428 GCCTTGGTTTTTGTTGAGTATTCTTCT 60.684 37.037 0.00 0.00 0.00 2.85
3077 7440 8.197439 CCTTGGTTTTTGTTGAGTATTCTTCTT 58.803 33.333 0.00 0.00 0.00 2.52
3149 7515 6.515272 AAATTCGCAGTATGAAATTCTGGT 57.485 33.333 0.00 0.00 41.45 4.00
3181 7547 6.906157 AATCAATTCTTGGTGTCATGACTT 57.094 33.333 25.55 7.11 0.00 3.01
3186 7552 4.271696 TCTTGGTGTCATGACTTACCAG 57.728 45.455 27.57 22.61 43.44 4.00
3187 7553 3.646162 TCTTGGTGTCATGACTTACCAGT 59.354 43.478 27.57 0.00 43.44 4.00
3228 7594 9.911788 ATCTGTCATCTTGTATTCCAGTTTTAT 57.088 29.630 0.00 0.00 0.00 1.40
3351 7720 8.926715 ACAATTAAAGAGAACACAAGGAAAAC 57.073 30.769 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 4.737578 ACTACTGTTCTACCCTCAACTCA 58.262 43.478 0.00 0.00 0.00 3.41
170 193 9.419737 GTGCATACATTTTATTTTATTTTGCGG 57.580 29.630 0.00 0.00 0.00 5.69
199 222 6.265196 TGATGCTCAAACATTCCAACTAAGTT 59.735 34.615 0.00 0.00 0.00 2.66
201 224 6.258230 TGATGCTCAAACATTCCAACTAAG 57.742 37.500 0.00 0.00 0.00 2.18
203 226 9.276590 CTATATGATGCTCAAACATTCCAACTA 57.723 33.333 0.00 0.00 0.00 2.24
204 227 7.230108 CCTATATGATGCTCAAACATTCCAACT 59.770 37.037 0.00 0.00 0.00 3.16
205 228 7.229306 TCCTATATGATGCTCAAACATTCCAAC 59.771 37.037 0.00 0.00 0.00 3.77
206 229 7.289310 TCCTATATGATGCTCAAACATTCCAA 58.711 34.615 0.00 0.00 0.00 3.53
207 230 6.840527 TCCTATATGATGCTCAAACATTCCA 58.159 36.000 0.00 0.00 0.00 3.53
208 231 7.750229 TTCCTATATGATGCTCAAACATTCC 57.250 36.000 0.00 0.00 0.00 3.01
210 233 9.976511 CAATTTCCTATATGATGCTCAAACATT 57.023 29.630 0.00 0.00 0.00 2.71
211 234 8.582437 CCAATTTCCTATATGATGCTCAAACAT 58.418 33.333 0.00 0.00 0.00 2.71
212 235 7.014518 CCCAATTTCCTATATGATGCTCAAACA 59.985 37.037 0.00 0.00 0.00 2.83
213 236 7.373493 CCCAATTTCCTATATGATGCTCAAAC 58.627 38.462 0.00 0.00 0.00 2.93
214 237 6.494491 CCCCAATTTCCTATATGATGCTCAAA 59.506 38.462 0.00 0.00 0.00 2.69
215 238 6.012113 CCCCAATTTCCTATATGATGCTCAA 58.988 40.000 0.00 0.00 0.00 3.02
216 239 5.074929 ACCCCAATTTCCTATATGATGCTCA 59.925 40.000 0.00 0.00 0.00 4.26
217 240 5.574188 ACCCCAATTTCCTATATGATGCTC 58.426 41.667 0.00 0.00 0.00 4.26
250 273 2.925262 TTTTTGGTCGCATGGCCCG 61.925 57.895 0.00 0.00 0.00 6.13
312 336 7.608153 ACTGCATTTAATAACACTTTTACCCC 58.392 34.615 0.00 0.00 0.00 4.95
333 357 5.850128 CCGTATATTCTCGTACAACTACTGC 59.150 44.000 0.00 0.00 0.00 4.40
407 431 7.801783 GGCGTATCCAGTAATTAGCATAAAAAC 59.198 37.037 0.00 0.00 34.01 2.43
408 432 7.307514 CGGCGTATCCAGTAATTAGCATAAAAA 60.308 37.037 0.00 0.00 34.01 1.94
409 433 6.146510 CGGCGTATCCAGTAATTAGCATAAAA 59.853 38.462 0.00 0.00 34.01 1.52
413 437 3.006537 ACGGCGTATCCAGTAATTAGCAT 59.993 43.478 12.58 0.00 34.01 3.79
415 439 2.985139 GACGGCGTATCCAGTAATTAGC 59.015 50.000 14.74 0.00 34.01 3.09
507 2004 0.947180 TTGCGCGTACTCTGGTTTCC 60.947 55.000 8.43 0.00 0.00 3.13
526 2023 7.014702 CAGTTCTCGCACAAAACAAAATTTTT 58.985 30.769 0.00 0.00 0.00 1.94
540 2037 0.861837 CAACCAGTCAGTTCTCGCAC 59.138 55.000 0.00 0.00 0.00 5.34
611 2127 6.090088 CACTTCTCTCAACGGTATTTCTCAAG 59.910 42.308 0.00 0.00 0.00 3.02
644 2161 4.659172 TCCAACGGGCTGGGCTTG 62.659 66.667 0.00 0.00 37.06 4.01
645 2162 4.351054 CTCCAACGGGCTGGGCTT 62.351 66.667 0.00 0.00 37.06 4.35
647 2164 4.785453 CTCTCCAACGGGCTGGGC 62.785 72.222 0.00 0.00 37.06 5.36
648 2165 4.785453 GCTCTCCAACGGGCTGGG 62.785 72.222 0.00 0.00 37.06 4.45
649 2166 3.965539 CTGCTCTCCAACGGGCTGG 62.966 68.421 0.00 0.00 37.87 4.85
650 2167 2.435586 CTGCTCTCCAACGGGCTG 60.436 66.667 0.00 0.00 0.00 4.85
651 2168 4.400961 GCTGCTCTCCAACGGGCT 62.401 66.667 0.00 0.00 0.00 5.19
654 2171 2.859273 ATTCGGCTGCTCTCCAACGG 62.859 60.000 0.00 0.00 0.00 4.44
655 2172 1.021390 AATTCGGCTGCTCTCCAACG 61.021 55.000 0.00 0.00 0.00 4.10
656 2173 0.449388 CAATTCGGCTGCTCTCCAAC 59.551 55.000 0.00 0.00 0.00 3.77
657 2174 1.308069 GCAATTCGGCTGCTCTCCAA 61.308 55.000 0.00 0.00 36.84 3.53
658 2175 1.746615 GCAATTCGGCTGCTCTCCA 60.747 57.895 0.00 0.00 36.84 3.86
659 2176 1.746615 TGCAATTCGGCTGCTCTCC 60.747 57.895 0.00 0.00 40.59 3.71
660 2177 1.300971 TGTGCAATTCGGCTGCTCTC 61.301 55.000 0.00 0.00 40.59 3.20
661 2178 0.679002 ATGTGCAATTCGGCTGCTCT 60.679 50.000 0.00 0.00 40.59 4.09
662 2179 0.248377 GATGTGCAATTCGGCTGCTC 60.248 55.000 0.00 3.51 40.59 4.26
663 2180 1.660560 GGATGTGCAATTCGGCTGCT 61.661 55.000 0.00 0.00 40.59 4.24
664 2181 1.226773 GGATGTGCAATTCGGCTGC 60.227 57.895 0.00 0.00 40.35 5.25
665 2182 1.063006 CGGATGTGCAATTCGGCTG 59.937 57.895 0.00 0.00 34.04 4.85
666 2183 2.764314 GCGGATGTGCAATTCGGCT 61.764 57.895 17.33 0.00 35.87 5.52
667 2184 2.278142 GCGGATGTGCAATTCGGC 60.278 61.111 12.04 12.04 34.15 5.54
668 2185 2.023181 CGCGGATGTGCAATTCGG 59.977 61.111 0.00 6.16 34.15 4.30
669 2186 1.011904 CTCGCGGATGTGCAATTCG 60.012 57.895 6.13 0.00 34.15 3.34
670 2187 0.940126 ATCTCGCGGATGTGCAATTC 59.060 50.000 6.13 0.00 32.69 2.17
671 2188 0.940126 GATCTCGCGGATGTGCAATT 59.060 50.000 6.13 0.00 34.33 2.32
672 2189 0.105593 AGATCTCGCGGATGTGCAAT 59.894 50.000 6.13 0.00 34.33 3.56
673 2190 0.744281 TAGATCTCGCGGATGTGCAA 59.256 50.000 6.13 0.00 34.33 4.08
674 2191 0.030773 GTAGATCTCGCGGATGTGCA 59.969 55.000 6.13 0.00 34.33 4.57
675 2192 0.664767 GGTAGATCTCGCGGATGTGC 60.665 60.000 6.13 10.01 34.33 4.57
676 2193 0.955178 AGGTAGATCTCGCGGATGTG 59.045 55.000 6.13 0.00 34.33 3.21
677 2194 1.202830 AGAGGTAGATCTCGCGGATGT 60.203 52.381 6.13 9.30 38.71 3.06
678 2195 1.466950 GAGAGGTAGATCTCGCGGATG 59.533 57.143 6.13 0.00 36.64 3.51
679 2196 1.612199 GGAGAGGTAGATCTCGCGGAT 60.612 57.143 6.13 8.16 45.60 4.18
680 2197 0.250381 GGAGAGGTAGATCTCGCGGA 60.250 60.000 6.13 2.40 45.60 5.54
681 2198 1.570347 CGGAGAGGTAGATCTCGCGG 61.570 65.000 6.13 0.00 45.60 6.46
682 2199 1.863491 CGGAGAGGTAGATCTCGCG 59.137 63.158 0.00 0.00 45.60 5.87
683 2200 1.577421 GCGGAGAGGTAGATCTCGC 59.423 63.158 0.00 2.22 45.60 5.03
684 2201 1.570347 CGGCGGAGAGGTAGATCTCG 61.570 65.000 0.00 0.00 45.60 4.04
685 2202 1.858372 GCGGCGGAGAGGTAGATCTC 61.858 65.000 9.78 0.00 44.21 2.75
686 2203 1.899534 GCGGCGGAGAGGTAGATCT 60.900 63.158 9.78 0.00 0.00 2.75
687 2204 1.899534 AGCGGCGGAGAGGTAGATC 60.900 63.158 9.78 0.00 0.00 2.75
688 2205 2.196229 AGCGGCGGAGAGGTAGAT 59.804 61.111 9.78 0.00 0.00 1.98
689 2206 2.829003 CAGCGGCGGAGAGGTAGA 60.829 66.667 9.78 0.00 0.00 2.59
690 2207 4.577246 GCAGCGGCGGAGAGGTAG 62.577 72.222 9.78 0.00 0.00 3.18
703 2220 3.225798 TTGTGGGCTTGTGGCAGC 61.226 61.111 0.00 0.00 44.01 5.25
704 2221 1.799258 GAGTTGTGGGCTTGTGGCAG 61.799 60.000 0.00 0.00 44.01 4.85
705 2222 1.827789 GAGTTGTGGGCTTGTGGCA 60.828 57.895 0.00 0.00 44.01 4.92
706 2223 2.564721 GGAGTTGTGGGCTTGTGGC 61.565 63.158 0.00 0.00 40.90 5.01
707 2224 0.540365 ATGGAGTTGTGGGCTTGTGG 60.540 55.000 0.00 0.00 0.00 4.17
708 2225 2.086869 CTATGGAGTTGTGGGCTTGTG 58.913 52.381 0.00 0.00 0.00 3.33
709 2226 1.705186 ACTATGGAGTTGTGGGCTTGT 59.295 47.619 0.00 0.00 28.61 3.16
710 2227 2.359900 GACTATGGAGTTGTGGGCTTG 58.640 52.381 0.00 0.00 35.45 4.01
711 2228 1.282157 GGACTATGGAGTTGTGGGCTT 59.718 52.381 0.00 0.00 35.45 4.35
712 2229 0.912486 GGACTATGGAGTTGTGGGCT 59.088 55.000 0.00 0.00 35.45 5.19
713 2230 0.912486 AGGACTATGGAGTTGTGGGC 59.088 55.000 0.00 0.00 35.45 5.36
714 2231 1.210478 CCAGGACTATGGAGTTGTGGG 59.790 57.143 0.00 0.00 43.57 4.61
715 2232 1.407437 GCCAGGACTATGGAGTTGTGG 60.407 57.143 0.00 3.44 43.57 4.17
716 2233 1.740380 CGCCAGGACTATGGAGTTGTG 60.740 57.143 0.00 0.00 43.57 3.33
717 2234 0.537188 CGCCAGGACTATGGAGTTGT 59.463 55.000 0.00 0.00 43.57 3.32
718 2235 0.824109 TCGCCAGGACTATGGAGTTG 59.176 55.000 0.00 0.00 43.57 3.16
719 2236 1.115467 CTCGCCAGGACTATGGAGTT 58.885 55.000 0.00 0.00 43.57 3.01
720 2237 0.259065 TCTCGCCAGGACTATGGAGT 59.741 55.000 0.00 0.00 43.57 3.85
721 2238 1.543802 GATCTCGCCAGGACTATGGAG 59.456 57.143 0.00 0.00 43.57 3.86
722 2239 1.145945 AGATCTCGCCAGGACTATGGA 59.854 52.381 0.00 0.00 43.57 3.41
723 2240 1.626686 AGATCTCGCCAGGACTATGG 58.373 55.000 0.00 0.00 43.72 2.74
724 2241 2.490115 GGTAGATCTCGCCAGGACTATG 59.510 54.545 0.00 0.00 0.00 2.23
725 2242 2.377193 AGGTAGATCTCGCCAGGACTAT 59.623 50.000 15.92 0.00 0.00 2.12
726 2243 1.775459 AGGTAGATCTCGCCAGGACTA 59.225 52.381 15.92 0.00 0.00 2.59
727 2244 0.553819 AGGTAGATCTCGCCAGGACT 59.446 55.000 15.92 0.00 0.00 3.85
728 2245 0.955905 GAGGTAGATCTCGCCAGGAC 59.044 60.000 15.92 0.76 0.00 3.85
729 2246 0.847373 AGAGGTAGATCTCGCCAGGA 59.153 55.000 15.92 0.00 38.71 3.86
730 2247 1.243902 GAGAGGTAGATCTCGCCAGG 58.756 60.000 15.92 0.00 36.64 4.45
734 2251 1.243902 CCTGGAGAGGTAGATCTCGC 58.756 60.000 0.00 0.00 45.60 5.03
735 2252 1.144093 ACCCTGGAGAGGTAGATCTCG 59.856 57.143 0.00 0.00 45.60 4.04
736 2253 3.322191 AACCCTGGAGAGGTAGATCTC 57.678 52.381 0.00 0.00 44.21 2.75
737 2254 3.786213 AAACCCTGGAGAGGTAGATCT 57.214 47.619 0.00 0.00 37.73 2.75
738 2255 4.846168 AAAAACCCTGGAGAGGTAGATC 57.154 45.455 0.00 0.00 37.73 2.75
739 2256 4.473922 GGTAAAAACCCTGGAGAGGTAGAT 59.526 45.833 0.00 0.00 37.73 1.98
740 2257 3.842436 GGTAAAAACCCTGGAGAGGTAGA 59.158 47.826 0.00 0.00 37.73 2.59
741 2258 3.844804 AGGTAAAAACCCTGGAGAGGTAG 59.155 47.826 0.00 0.00 37.73 3.18
742 2259 3.878086 AGGTAAAAACCCTGGAGAGGTA 58.122 45.455 0.00 0.00 37.73 3.08
743 2260 2.714808 AGGTAAAAACCCTGGAGAGGT 58.285 47.619 0.00 0.00 37.73 3.85
744 2261 3.808834 AAGGTAAAAACCCTGGAGAGG 57.191 47.619 0.00 0.00 39.42 3.69
745 2262 8.107729 AGTAATTAAGGTAAAAACCCTGGAGAG 58.892 37.037 0.00 0.00 30.99 3.20
746 2263 7.886446 CAGTAATTAAGGTAAAAACCCTGGAGA 59.114 37.037 0.00 0.00 30.99 3.71
747 2264 7.122204 CCAGTAATTAAGGTAAAAACCCTGGAG 59.878 40.741 0.00 0.00 30.99 3.86
748 2265 6.949463 CCAGTAATTAAGGTAAAAACCCTGGA 59.051 38.462 0.00 0.00 30.99 3.86
749 2266 6.949463 TCCAGTAATTAAGGTAAAAACCCTGG 59.051 38.462 0.00 0.00 30.99 4.45
750 2267 8.589701 ATCCAGTAATTAAGGTAAAAACCCTG 57.410 34.615 5.41 0.00 30.99 4.45
753 2270 9.961265 GCATATCCAGTAATTAAGGTAAAAACC 57.039 33.333 5.41 0.00 0.00 3.27
754 2271 9.961265 GGCATATCCAGTAATTAAGGTAAAAAC 57.039 33.333 5.41 0.00 34.01 2.43
755 2272 8.842280 CGGCATATCCAGTAATTAAGGTAAAAA 58.158 33.333 5.41 0.00 34.01 1.94
756 2273 7.994334 ACGGCATATCCAGTAATTAAGGTAAAA 59.006 33.333 5.41 0.00 34.01 1.52
757 2274 7.511268 ACGGCATATCCAGTAATTAAGGTAAA 58.489 34.615 5.41 0.00 34.01 2.01
758 2275 7.069877 ACGGCATATCCAGTAATTAAGGTAA 57.930 36.000 5.41 0.00 34.01 2.85
759 2276 6.268158 TGACGGCATATCCAGTAATTAAGGTA 59.732 38.462 0.00 0.13 34.01 3.08
760 2277 5.071250 TGACGGCATATCCAGTAATTAAGGT 59.929 40.000 0.00 0.00 34.01 3.50
761 2278 5.547465 TGACGGCATATCCAGTAATTAAGG 58.453 41.667 0.00 0.00 34.01 2.69
762 2279 7.173218 ACAATGACGGCATATCCAGTAATTAAG 59.827 37.037 2.90 0.00 33.44 1.85
763 2280 6.995686 ACAATGACGGCATATCCAGTAATTAA 59.004 34.615 2.90 0.00 33.44 1.40
764 2281 6.530120 ACAATGACGGCATATCCAGTAATTA 58.470 36.000 2.90 0.00 33.44 1.40
765 2282 5.376625 ACAATGACGGCATATCCAGTAATT 58.623 37.500 2.90 0.00 33.44 1.40
766 2283 4.973168 ACAATGACGGCATATCCAGTAAT 58.027 39.130 2.90 0.00 33.44 1.89
767 2284 4.415881 ACAATGACGGCATATCCAGTAA 57.584 40.909 2.90 0.00 33.44 2.24
768 2285 4.415881 AACAATGACGGCATATCCAGTA 57.584 40.909 2.90 0.00 33.44 2.74
769 2286 3.281727 AACAATGACGGCATATCCAGT 57.718 42.857 2.90 0.00 33.44 4.00
770 2287 5.749596 TTTAACAATGACGGCATATCCAG 57.250 39.130 2.90 0.00 33.44 3.86
771 2288 6.707440 AATTTAACAATGACGGCATATCCA 57.293 33.333 2.90 0.00 33.44 3.41
772 2289 9.691362 ATTAAATTTAACAATGACGGCATATCC 57.309 29.630 2.90 0.00 33.44 2.59
776 2293 8.174422 GCAAATTAAATTTAACAATGACGGCAT 58.826 29.630 12.74 0.00 35.92 4.40
777 2294 7.171508 TGCAAATTAAATTTAACAATGACGGCA 59.828 29.630 12.74 0.00 0.00 5.69
778 2295 7.513968 TGCAAATTAAATTTAACAATGACGGC 58.486 30.769 12.74 8.77 0.00 5.68
779 2296 7.687757 GCTGCAAATTAAATTTAACAATGACGG 59.312 33.333 12.74 12.44 0.00 4.79
780 2297 8.434661 AGCTGCAAATTAAATTTAACAATGACG 58.565 29.630 12.74 7.87 0.00 4.35
783 2300 9.332301 CCAAGCTGCAAATTAAATTTAACAATG 57.668 29.630 12.74 12.29 0.00 2.82
784 2301 9.282569 TCCAAGCTGCAAATTAAATTTAACAAT 57.717 25.926 12.74 0.47 0.00 2.71
785 2302 8.668510 TCCAAGCTGCAAATTAAATTTAACAA 57.331 26.923 12.74 0.00 0.00 2.83
786 2303 8.719648 CATCCAAGCTGCAAATTAAATTTAACA 58.280 29.630 12.74 5.91 0.00 2.41
787 2304 8.720562 ACATCCAAGCTGCAAATTAAATTTAAC 58.279 29.630 12.74 1.55 0.00 2.01
788 2305 8.845413 ACATCCAAGCTGCAAATTAAATTTAA 57.155 26.923 12.85 12.85 0.00 1.52
789 2306 8.093307 TGACATCCAAGCTGCAAATTAAATTTA 58.907 29.630 1.02 0.00 0.00 1.40
790 2307 6.935771 TGACATCCAAGCTGCAAATTAAATTT 59.064 30.769 1.02 0.00 0.00 1.82
791 2308 6.465948 TGACATCCAAGCTGCAAATTAAATT 58.534 32.000 1.02 0.00 0.00 1.82
792 2309 6.040209 TGACATCCAAGCTGCAAATTAAAT 57.960 33.333 1.02 0.00 0.00 1.40
793 2310 5.465532 TGACATCCAAGCTGCAAATTAAA 57.534 34.783 1.02 0.00 0.00 1.52
794 2311 5.664294 ATGACATCCAAGCTGCAAATTAA 57.336 34.783 1.02 0.00 0.00 1.40
795 2312 5.412640 CAATGACATCCAAGCTGCAAATTA 58.587 37.500 1.02 0.00 0.00 1.40
796 2313 4.250464 CAATGACATCCAAGCTGCAAATT 58.750 39.130 1.02 0.00 0.00 1.82
797 2314 3.857052 CAATGACATCCAAGCTGCAAAT 58.143 40.909 1.02 0.00 0.00 2.32
798 2315 2.610976 GCAATGACATCCAAGCTGCAAA 60.611 45.455 1.02 0.00 32.46 3.68
799 2316 1.067425 GCAATGACATCCAAGCTGCAA 60.067 47.619 1.02 0.00 32.46 4.08
800 2317 0.528924 GCAATGACATCCAAGCTGCA 59.471 50.000 1.02 0.00 32.46 4.41
801 2318 0.815734 AGCAATGACATCCAAGCTGC 59.184 50.000 0.00 0.00 38.32 5.25
802 2319 3.011818 TGTAGCAATGACATCCAAGCTG 58.988 45.455 12.26 0.00 39.50 4.24
803 2320 3.354948 TGTAGCAATGACATCCAAGCT 57.645 42.857 8.88 8.88 41.23 3.74
804 2321 4.082571 AGTTTGTAGCAATGACATCCAAGC 60.083 41.667 0.00 0.00 0.00 4.01
805 2322 5.633830 AGTTTGTAGCAATGACATCCAAG 57.366 39.130 0.00 0.00 0.00 3.61
806 2323 6.403866 AAAGTTTGTAGCAATGACATCCAA 57.596 33.333 0.00 0.00 0.00 3.53
807 2324 6.040278 TGAAAAGTTTGTAGCAATGACATCCA 59.960 34.615 0.00 0.00 0.00 3.41
808 2325 6.446318 TGAAAAGTTTGTAGCAATGACATCC 58.554 36.000 0.00 0.00 0.00 3.51
809 2326 7.596248 ACATGAAAAGTTTGTAGCAATGACATC 59.404 33.333 0.00 0.00 0.00 3.06
810 2327 7.436118 ACATGAAAAGTTTGTAGCAATGACAT 58.564 30.769 0.00 0.00 0.00 3.06
811 2328 6.804677 ACATGAAAAGTTTGTAGCAATGACA 58.195 32.000 0.00 0.00 0.00 3.58
812 2329 7.141363 AGACATGAAAAGTTTGTAGCAATGAC 58.859 34.615 0.00 0.00 0.00 3.06
813 2330 7.275888 AGACATGAAAAGTTTGTAGCAATGA 57.724 32.000 0.00 0.00 0.00 2.57
814 2331 7.935338 AAGACATGAAAAGTTTGTAGCAATG 57.065 32.000 0.00 0.00 0.00 2.82
815 2332 8.629158 TGTAAGACATGAAAAGTTTGTAGCAAT 58.371 29.630 0.00 0.00 0.00 3.56
816 2333 7.990917 TGTAAGACATGAAAAGTTTGTAGCAA 58.009 30.769 0.00 0.00 0.00 3.91
817 2334 7.561021 TGTAAGACATGAAAAGTTTGTAGCA 57.439 32.000 0.00 0.00 0.00 3.49
824 2341 9.846248 GCAGAATAATGTAAGACATGAAAAGTT 57.154 29.630 0.00 0.00 37.97 2.66
825 2342 9.236006 AGCAGAATAATGTAAGACATGAAAAGT 57.764 29.630 0.00 0.00 37.97 2.66
829 2346 9.755804 CTCTAGCAGAATAATGTAAGACATGAA 57.244 33.333 0.00 0.00 37.97 2.57
830 2347 9.136323 TCTCTAGCAGAATAATGTAAGACATGA 57.864 33.333 0.00 0.00 37.97 3.07
831 2348 9.755804 TTCTCTAGCAGAATAATGTAAGACATG 57.244 33.333 0.00 0.00 36.14 3.21
845 2362 8.960591 CCTCCAATTTTATTTTCTCTAGCAGAA 58.039 33.333 0.00 1.82 39.56 3.02
846 2363 7.067494 GCCTCCAATTTTATTTTCTCTAGCAGA 59.933 37.037 0.00 0.00 0.00 4.26
847 2364 7.199078 GCCTCCAATTTTATTTTCTCTAGCAG 58.801 38.462 0.00 0.00 0.00 4.24
848 2365 6.183360 CGCCTCCAATTTTATTTTCTCTAGCA 60.183 38.462 0.00 0.00 0.00 3.49
860 2377 1.807742 CAACGACCGCCTCCAATTTTA 59.192 47.619 0.00 0.00 0.00 1.52
861 2378 0.596082 CAACGACCGCCTCCAATTTT 59.404 50.000 0.00 0.00 0.00 1.82
867 2384 0.458669 TAATCTCAACGACCGCCTCC 59.541 55.000 0.00 0.00 0.00 4.30
877 2394 3.618690 ACTCTGGCCAGTAATCTCAAC 57.381 47.619 31.58 0.00 0.00 3.18
885 2402 3.060020 GCGCGTACTCTGGCCAGTA 62.060 63.158 31.58 16.46 0.00 2.74
887 2404 4.435436 TGCGCGTACTCTGGCCAG 62.435 66.667 27.87 27.87 0.00 4.85
889 2406 3.642778 TTCTGCGCGTACTCTGGCC 62.643 63.158 8.43 0.00 0.00 5.36
890 2407 1.289109 TTTTCTGCGCGTACTCTGGC 61.289 55.000 8.43 0.00 0.00 4.85
891 2408 1.359848 ATTTTCTGCGCGTACTCTGG 58.640 50.000 8.43 0.00 0.00 3.86
892 2409 3.455619 AAATTTTCTGCGCGTACTCTG 57.544 42.857 8.43 0.00 0.00 3.35
893 2410 3.250040 ACAAAATTTTCTGCGCGTACTCT 59.750 39.130 8.43 0.00 0.00 3.24
895 2412 3.619233 ACAAAATTTTCTGCGCGTACT 57.381 38.095 8.43 0.00 0.00 2.73
896 2413 4.685824 AAACAAAATTTTCTGCGCGTAC 57.314 36.364 8.43 0.00 0.00 3.67
897 2414 5.038033 AGAAAACAAAATTTTCTGCGCGTA 58.962 33.333 8.43 0.71 44.39 4.42
898 2415 3.862845 AGAAAACAAAATTTTCTGCGCGT 59.137 34.783 8.43 0.00 44.39 6.01
899 2416 4.436365 AGAAAACAAAATTTTCTGCGCG 57.564 36.364 12.59 0.00 44.39 6.86
904 2421 7.064966 CAGTTCTGGCAGAAAACAAAATTTTCT 59.935 33.333 30.06 15.61 46.29 2.52
905 2422 7.064490 TCAGTTCTGGCAGAAAACAAAATTTTC 59.936 33.333 30.06 13.68 35.75 2.29
906 2423 6.878389 TCAGTTCTGGCAGAAAACAAAATTTT 59.122 30.769 30.06 0.00 35.75 1.82
907 2424 6.313658 GTCAGTTCTGGCAGAAAACAAAATTT 59.686 34.615 30.06 1.36 35.75 1.82
908 2425 5.812127 GTCAGTTCTGGCAGAAAACAAAATT 59.188 36.000 30.06 1.78 35.75 1.82
909 2426 5.127682 AGTCAGTTCTGGCAGAAAACAAAAT 59.872 36.000 30.06 11.56 35.75 1.82
910 2427 4.462483 AGTCAGTTCTGGCAGAAAACAAAA 59.538 37.500 30.06 10.95 35.75 2.44
911 2428 4.016444 AGTCAGTTCTGGCAGAAAACAAA 58.984 39.130 30.06 12.28 35.75 2.83
912 2429 3.620488 AGTCAGTTCTGGCAGAAAACAA 58.380 40.909 30.06 13.95 35.75 2.83
913 2430 3.281727 AGTCAGTTCTGGCAGAAAACA 57.718 42.857 30.06 14.33 35.75 2.83
914 2431 4.639135 AAAGTCAGTTCTGGCAGAAAAC 57.361 40.909 30.06 25.10 35.75 2.43
915 2432 5.659440 AAAAAGTCAGTTCTGGCAGAAAA 57.341 34.783 30.06 16.34 35.75 2.29
942 2459 3.366422 GTCAGTTCTCGCAGAATTGTCTC 59.634 47.826 15.61 8.39 41.14 3.36
943 2460 3.321497 GTCAGTTCTCGCAGAATTGTCT 58.679 45.455 15.61 2.89 41.14 3.41
944 2461 2.413453 GGTCAGTTCTCGCAGAATTGTC 59.587 50.000 15.61 12.12 41.14 3.18
945 2462 2.417719 GGTCAGTTCTCGCAGAATTGT 58.582 47.619 15.61 0.00 41.14 2.71
946 2463 1.391485 CGGTCAGTTCTCGCAGAATTG 59.609 52.381 12.17 12.17 41.55 2.32
947 2464 1.673033 CCGGTCAGTTCTCGCAGAATT 60.673 52.381 0.00 0.00 36.50 2.17
948 2465 0.108615 CCGGTCAGTTCTCGCAGAAT 60.109 55.000 0.00 0.00 36.50 2.40
949 2466 1.289066 CCGGTCAGTTCTCGCAGAA 59.711 57.895 0.00 0.00 34.09 3.02
950 2467 1.461091 AACCGGTCAGTTCTCGCAGA 61.461 55.000 8.04 0.00 0.00 4.26
951 2468 1.006102 AACCGGTCAGTTCTCGCAG 60.006 57.895 8.04 0.00 0.00 5.18
952 2469 1.300620 CAACCGGTCAGTTCTCGCA 60.301 57.895 8.04 0.00 0.00 5.10
954 2471 2.810486 GACAACCGGTCAGTTCTCG 58.190 57.895 8.04 0.00 46.19 4.04
962 2479 0.584876 CCTTTCAACGACAACCGGTC 59.415 55.000 8.04 0.00 43.93 4.79
963 2480 0.816421 CCCTTTCAACGACAACCGGT 60.816 55.000 0.00 0.00 43.93 5.28
964 2481 1.512156 CCCCTTTCAACGACAACCGG 61.512 60.000 0.00 0.00 43.93 5.28
965 2482 1.946267 CCCCTTTCAACGACAACCG 59.054 57.895 0.00 0.00 45.44 4.44
966 2483 1.658114 GCCCCTTTCAACGACAACC 59.342 57.895 0.00 0.00 0.00 3.77
967 2484 1.104577 TGGCCCCTTTCAACGACAAC 61.105 55.000 0.00 0.00 0.00 3.32
968 2485 0.395862 TTGGCCCCTTTCAACGACAA 60.396 50.000 0.00 0.00 0.00 3.18
969 2486 0.821711 CTTGGCCCCTTTCAACGACA 60.822 55.000 0.00 0.00 0.00 4.35
971 2488 1.228429 CCTTGGCCCCTTTCAACGA 60.228 57.895 0.00 0.00 0.00 3.85
972 2489 1.228429 TCCTTGGCCCCTTTCAACG 60.228 57.895 0.00 0.00 0.00 4.10
975 2492 1.460255 CTGTCCTTGGCCCCTTTCA 59.540 57.895 0.00 0.00 0.00 2.69
997 2514 2.036256 AATTTGGGCTGCTCCGCT 59.964 55.556 0.00 0.00 34.94 5.52
998 2515 2.182537 CAATTTGGGCTGCTCCGC 59.817 61.111 0.00 0.00 34.94 5.54
999 2516 2.182537 GCAATTTGGGCTGCTCCG 59.817 61.111 0.00 0.00 35.62 4.63
1022 2541 2.684104 CCTCCCTCTCGTCTCCCA 59.316 66.667 0.00 0.00 0.00 4.37
1024 2543 1.997256 TAGGCCTCCCTCTCGTCTCC 61.997 65.000 9.68 0.00 41.75 3.71
1163 3184 1.837538 CGAGCGAGGATCTCCGAGAC 61.838 65.000 0.00 0.00 42.08 3.36
1302 3323 3.181967 CTACGTCGCTGTGGCTGC 61.182 66.667 0.00 0.00 36.09 5.25
1723 3783 2.342279 CGGAACAGAAGCCCGTCA 59.658 61.111 0.00 0.00 38.55 4.35
1729 3789 1.019805 GGCTACCACGGAACAGAAGC 61.020 60.000 0.00 0.00 0.00 3.86
1992 4058 7.333528 TCAATATGGCTAGAATTTTGACACC 57.666 36.000 0.00 0.00 0.00 4.16
2259 4335 6.959639 AGAAACACCACAACACTCAATATT 57.040 33.333 0.00 0.00 0.00 1.28
2419 6296 3.554960 GCCACTTCAACCCAAAAGGAATC 60.555 47.826 0.00 0.00 39.89 2.52
2445 6323 8.684386 TTGTAATTTTAGAATCCACACTCACA 57.316 30.769 0.00 0.00 0.00 3.58
2491 6396 7.765307 TGAGTCAGATCAATAGGCAAAATTTC 58.235 34.615 0.00 0.00 0.00 2.17
2494 6399 6.832384 ACATGAGTCAGATCAATAGGCAAAAT 59.168 34.615 0.00 0.00 31.76 1.82
2495 6400 6.182627 ACATGAGTCAGATCAATAGGCAAAA 58.817 36.000 0.00 0.00 31.76 2.44
2559 6771 7.619964 AAAAGTATGGTTCAATACCTAACCG 57.380 36.000 0.00 0.00 46.74 4.44
2591 6809 1.268113 AACGATGCAACGCAAAAGCG 61.268 50.000 16.93 8.45 43.62 4.68
2633 6851 7.088589 CACATAAAGTGGTTAGCAGCTAAAT 57.911 36.000 16.74 2.10 44.69 1.40
2651 6869 6.319405 CACCAGATGAACCATTGATCACATAA 59.681 38.462 0.00 0.00 0.00 1.90
2652 6870 5.824097 CACCAGATGAACCATTGATCACATA 59.176 40.000 0.00 0.00 0.00 2.29
2653 6871 4.643334 CACCAGATGAACCATTGATCACAT 59.357 41.667 0.00 0.00 0.00 3.21
2655 6873 4.012374 ACACCAGATGAACCATTGATCAC 58.988 43.478 0.00 0.00 0.00 3.06
2656 6874 4.305539 ACACCAGATGAACCATTGATCA 57.694 40.909 0.00 0.00 0.00 2.92
2665 6886 7.672983 TCTTAAGATCAAACACCAGATGAAC 57.327 36.000 0.00 0.00 0.00 3.18
2698 6919 8.389779 TGCTTATCAGTACAAGTTTCATTTCA 57.610 30.769 0.00 0.00 0.00 2.69
2735 6956 1.078848 AGCTGAGCCGGACAATGAC 60.079 57.895 5.05 0.00 0.00 3.06
2815 7160 4.339247 GGCCTAATTCATACACATTGTGCT 59.661 41.667 16.62 6.87 36.98 4.40
2873 7218 5.643777 GCCAGAGCTTCTTGAACATAACTTA 59.356 40.000 0.00 0.00 35.50 2.24
3076 7439 8.477419 AACCACTGGATGATCTTTAAGAAAAA 57.523 30.769 0.71 0.00 0.00 1.94
3077 7440 8.477419 AAACCACTGGATGATCTTTAAGAAAA 57.523 30.769 0.71 0.00 0.00 2.29
3181 7547 7.147177 ACAGATATCTAGTCTTACCCACTGGTA 60.147 40.741 4.54 0.00 45.45 3.25
3186 7552 7.668052 AGATGACAGATATCTAGTCTTACCCAC 59.332 40.741 23.74 12.75 33.30 4.61
3187 7553 7.760607 AGATGACAGATATCTAGTCTTACCCA 58.239 38.462 23.74 12.06 33.30 4.51
3351 7720 0.508641 GTGCACGTTACTCACAGCAG 59.491 55.000 0.00 0.00 36.90 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.