Multiple sequence alignment - TraesCS7A01G074000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G074000 chr7A 100.000 3418 0 0 1 3418 39489547 39492964 0.000000e+00 6312.0
1 TraesCS7A01G074000 chr7A 93.657 268 16 1 1 268 576097175 576097441 1.910000e-107 399.0
2 TraesCS7A01G074000 chr1A 96.704 2579 75 3 849 3418 592811663 592814240 0.000000e+00 4283.0
3 TraesCS7A01G074000 chr1A 86.500 1400 116 17 1483 2836 561312265 561310893 0.000000e+00 1471.0
4 TraesCS7A01G074000 chr1A 82.109 531 67 15 2324 2836 465251161 465250641 2.440000e-116 429.0
5 TraesCS7A01G074000 chr1A 86.242 298 29 4 1052 1337 561319905 561319608 2.560000e-81 313.0
6 TraesCS7A01G074000 chr1A 81.744 367 33 11 3056 3418 67735727 67735391 3.360000e-70 276.0
7 TraesCS7A01G074000 chr2A 97.531 2390 55 3 1030 3418 777398352 777400738 0.000000e+00 4084.0
8 TraesCS7A01G074000 chr2A 87.123 1359 106 26 1526 2836 44035747 44034410 0.000000e+00 1476.0
9 TraesCS7A01G074000 chr2A 86.648 1071 108 12 1794 2836 23476761 23475698 0.000000e+00 1153.0
10 TraesCS7A01G074000 chr2A 87.560 627 23 5 428 1030 777397676 777398271 0.000000e+00 675.0
11 TraesCS7A01G074000 chr2A 85.412 425 37 11 1037 1439 44036181 44035760 5.280000e-113 418.0
12 TraesCS7A01G074000 chr2A 90.299 268 23 2 429 695 12616174 12616439 7.020000e-92 348.0
13 TraesCS7A01G074000 chr2A 84.194 310 30 6 1331 1638 23477124 23476832 2.010000e-72 283.0
14 TraesCS7A01G074000 chr2A 82.687 335 27 7 726 1030 23477789 23477456 5.620000e-68 268.0
15 TraesCS7A01G074000 chr7B 92.944 1403 79 7 1484 2885 40662971 40661588 0.000000e+00 2025.0
16 TraesCS7A01G074000 chr7B 86.466 1064 108 21 1483 2517 328156259 328155203 0.000000e+00 1134.0
17 TraesCS7A01G074000 chr7B 89.107 459 38 8 1030 1485 40663524 40663075 8.280000e-156 560.0
18 TraesCS7A01G074000 chr7B 94.925 335 17 0 3084 3418 40661453 40661119 3.020000e-145 525.0
19 TraesCS7A01G074000 chr7B 86.707 331 16 10 728 1030 40664158 40663828 3.270000e-90 342.0
20 TraesCS7A01G074000 chr7B 85.987 314 33 3 1137 1439 328156571 328156258 3.290000e-85 326.0
21 TraesCS7A01G074000 chr7D 86.805 1493 136 29 1377 2828 503691908 503690436 0.000000e+00 1609.0
22 TraesCS7A01G074000 chr6D 87.286 1400 109 17 1483 2836 448409824 448408448 0.000000e+00 1535.0
23 TraesCS7A01G074000 chr6D 91.255 263 20 2 1180 1439 448410085 448409823 4.200000e-94 355.0
24 TraesCS7A01G074000 chr6D 81.115 323 33 15 3098 3418 208857640 208857344 2.050000e-57 233.0
25 TraesCS7A01G074000 chr4A 86.885 1403 116 30 1480 2836 383532465 383533845 0.000000e+00 1509.0
26 TraesCS7A01G074000 chr4A 80.748 535 76 19 2310 2836 738596550 738596035 3.200000e-105 392.0
27 TraesCS7A01G074000 chr4A 80.926 367 36 11 3056 3418 467672173 467671837 3.380000e-65 259.0
28 TraesCS7A01G074000 chr3B 86.848 1399 120 16 1483 2836 71127197 71125818 0.000000e+00 1506.0
29 TraesCS7A01G074000 chr3B 95.865 266 11 0 1 266 491805154 491804889 6.780000e-117 431.0
30 TraesCS7A01G074000 chr3B 80.295 543 64 17 2310 2836 101365569 101366084 1.500000e-98 370.0
31 TraesCS7A01G074000 chr3B 91.473 129 11 0 1180 1308 71128956 71128828 9.750000e-41 178.0
32 TraesCS7A01G074000 chr6A 86.040 1404 124 23 1480 2836 579824933 579826311 0.000000e+00 1441.0
33 TraesCS7A01G074000 chr6A 88.557 402 35 3 1049 1439 579824536 579824937 8.580000e-131 477.0
34 TraesCS7A01G074000 chr6A 85.714 259 35 2 19 276 604898791 604899048 4.350000e-69 272.0
35 TraesCS7A01G074000 chr3A 87.177 1084 101 17 1785 2836 308690873 308691950 0.000000e+00 1197.0
36 TraesCS7A01G074000 chr3A 95.652 322 11 2 3100 3418 658734963 658734642 6.540000e-142 514.0
37 TraesCS7A01G074000 chr3A 95.652 276 10 2 1 274 35136389 35136114 3.130000e-120 442.0
38 TraesCS7A01G074000 chr3A 95.290 276 11 2 1 274 35078553 35078278 1.460000e-118 436.0
39 TraesCS7A01G074000 chr3A 85.819 409 33 11 1377 1761 308690473 308690880 8.830000e-111 411.0
40 TraesCS7A01G074000 chr3A 84.308 325 30 15 3098 3418 157625840 157626147 7.170000e-77 298.0
41 TraesCS7A01G074000 chr3A 86.531 245 31 2 2590 2833 299549487 299549730 5.620000e-68 268.0
42 TraesCS7A01G074000 chr5B 85.263 760 67 11 2120 2836 554167126 554166369 0.000000e+00 741.0
43 TraesCS7A01G074000 chr5B 85.227 264 36 3 19 281 682530326 682530065 5.620000e-68 268.0
44 TraesCS7A01G074000 chr5A 96.169 261 10 0 1 261 637174270 637174010 8.770000e-116 427.0
45 TraesCS7A01G074000 chr4B 94.585 277 13 2 1 277 475791999 475791725 8.770000e-116 427.0
46 TraesCS7A01G074000 chr3D 88.525 244 27 1 2590 2833 226604213 226604455 9.280000e-76 294.0
47 TraesCS7A01G074000 chrUn 82.289 367 31 13 3056 3418 28696325 28695989 1.550000e-73 287.0
48 TraesCS7A01G074000 chr2B 85.878 262 34 3 19 279 217834422 217834681 3.360000e-70 276.0
49 TraesCS7A01G074000 chr2B 91.667 60 5 0 726 785 144073316 144073257 2.190000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G074000 chr7A 39489547 39492964 3417 False 6312.0 6312 100.000000 1 3418 1 chr7A.!!$F1 3417
1 TraesCS7A01G074000 chr1A 592811663 592814240 2577 False 4283.0 4283 96.704000 849 3418 1 chr1A.!!$F1 2569
2 TraesCS7A01G074000 chr1A 561310893 561312265 1372 True 1471.0 1471 86.500000 1483 2836 1 chr1A.!!$R3 1353
3 TraesCS7A01G074000 chr1A 465250641 465251161 520 True 429.0 429 82.109000 2324 2836 1 chr1A.!!$R2 512
4 TraesCS7A01G074000 chr2A 777397676 777400738 3062 False 2379.5 4084 92.545500 428 3418 2 chr2A.!!$F2 2990
5 TraesCS7A01G074000 chr2A 44034410 44036181 1771 True 947.0 1476 86.267500 1037 2836 2 chr2A.!!$R2 1799
6 TraesCS7A01G074000 chr2A 23475698 23477789 2091 True 568.0 1153 84.509667 726 2836 3 chr2A.!!$R1 2110
7 TraesCS7A01G074000 chr7B 40661119 40664158 3039 True 863.0 2025 90.920750 728 3418 4 chr7B.!!$R1 2690
8 TraesCS7A01G074000 chr7B 328155203 328156571 1368 True 730.0 1134 86.226500 1137 2517 2 chr7B.!!$R2 1380
9 TraesCS7A01G074000 chr7D 503690436 503691908 1472 True 1609.0 1609 86.805000 1377 2828 1 chr7D.!!$R1 1451
10 TraesCS7A01G074000 chr6D 448408448 448410085 1637 True 945.0 1535 89.270500 1180 2836 2 chr6D.!!$R2 1656
11 TraesCS7A01G074000 chr4A 383532465 383533845 1380 False 1509.0 1509 86.885000 1480 2836 1 chr4A.!!$F1 1356
12 TraesCS7A01G074000 chr4A 738596035 738596550 515 True 392.0 392 80.748000 2310 2836 1 chr4A.!!$R2 526
13 TraesCS7A01G074000 chr3B 71125818 71128956 3138 True 842.0 1506 89.160500 1180 2836 2 chr3B.!!$R2 1656
14 TraesCS7A01G074000 chr3B 101365569 101366084 515 False 370.0 370 80.295000 2310 2836 1 chr3B.!!$F1 526
15 TraesCS7A01G074000 chr6A 579824536 579826311 1775 False 959.0 1441 87.298500 1049 2836 2 chr6A.!!$F2 1787
16 TraesCS7A01G074000 chr3A 308690473 308691950 1477 False 804.0 1197 86.498000 1377 2836 2 chr3A.!!$F3 1459
17 TraesCS7A01G074000 chr5B 554166369 554167126 757 True 741.0 741 85.263000 2120 2836 1 chr5B.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 411 0.035534 ATGCATGTCCGGTGTGCTTA 60.036 50.0 22.15 9.38 39.52 3.09 F
1043 1661 0.179000 GAGGAGCATCGATGGTGGTT 59.821 55.0 32.96 17.94 38.85 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 4296 2.749621 GCCACCTCACAAATGTAGGAAG 59.250 50.000 12.83 7.08 34.34 3.46 R
2823 5272 2.563179 AGCCAACGTCACAAGAGAGTAT 59.437 45.455 0.00 0.00 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.464734 TTTTTCACGTGCCAGGTTGA 58.535 45.000 11.67 0.00 0.00 3.18
24 25 1.686355 TTTTCACGTGCCAGGTTGAT 58.314 45.000 11.67 0.00 0.00 2.57
25 26 1.686355 TTTCACGTGCCAGGTTGATT 58.314 45.000 11.67 0.00 0.00 2.57
26 27 1.234821 TTCACGTGCCAGGTTGATTC 58.765 50.000 11.67 0.00 0.00 2.52
27 28 0.396435 TCACGTGCCAGGTTGATTCT 59.604 50.000 11.67 0.00 0.00 2.40
28 29 1.621317 TCACGTGCCAGGTTGATTCTA 59.379 47.619 11.67 0.00 0.00 2.10
29 30 2.037902 TCACGTGCCAGGTTGATTCTAA 59.962 45.455 11.67 0.00 0.00 2.10
30 31 2.811431 CACGTGCCAGGTTGATTCTAAA 59.189 45.455 0.82 0.00 0.00 1.85
31 32 3.252215 CACGTGCCAGGTTGATTCTAAAA 59.748 43.478 0.82 0.00 0.00 1.52
32 33 4.079253 ACGTGCCAGGTTGATTCTAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
33 34 4.082787 ACGTGCCAGGTTGATTCTAAAATG 60.083 41.667 0.00 0.00 0.00 2.32
34 35 4.675146 CGTGCCAGGTTGATTCTAAAATGG 60.675 45.833 0.00 0.00 0.00 3.16
35 36 4.462483 GTGCCAGGTTGATTCTAAAATGGA 59.538 41.667 0.00 0.00 0.00 3.41
36 37 5.127682 GTGCCAGGTTGATTCTAAAATGGAT 59.872 40.000 0.00 0.00 0.00 3.41
37 38 6.321181 GTGCCAGGTTGATTCTAAAATGGATA 59.679 38.462 0.00 0.00 0.00 2.59
38 39 6.547141 TGCCAGGTTGATTCTAAAATGGATAG 59.453 38.462 0.00 0.00 0.00 2.08
39 40 6.015940 GCCAGGTTGATTCTAAAATGGATAGG 60.016 42.308 0.00 0.00 0.00 2.57
40 41 6.491403 CCAGGTTGATTCTAAAATGGATAGGG 59.509 42.308 0.00 0.00 0.00 3.53
41 42 6.491403 CAGGTTGATTCTAAAATGGATAGGGG 59.509 42.308 0.00 0.00 0.00 4.79
42 43 5.243954 GGTTGATTCTAAAATGGATAGGGGC 59.756 44.000 0.00 0.00 0.00 5.80
43 44 5.930209 TGATTCTAAAATGGATAGGGGCT 57.070 39.130 0.00 0.00 0.00 5.19
44 45 6.279813 TGATTCTAAAATGGATAGGGGCTT 57.720 37.500 0.00 0.00 0.00 4.35
45 46 6.682537 TGATTCTAAAATGGATAGGGGCTTT 58.317 36.000 0.00 0.00 0.00 3.51
46 47 7.132128 TGATTCTAAAATGGATAGGGGCTTTT 58.868 34.615 0.00 0.00 0.00 2.27
47 48 7.287696 TGATTCTAAAATGGATAGGGGCTTTTC 59.712 37.037 0.00 0.00 0.00 2.29
48 49 5.454966 TCTAAAATGGATAGGGGCTTTTCC 58.545 41.667 0.00 0.00 0.00 3.13
49 50 2.364972 AATGGATAGGGGCTTTTCCG 57.635 50.000 0.00 0.00 34.94 4.30
55 56 3.278157 GGGGCTTTTCCGCAGAAG 58.722 61.111 0.00 0.00 46.30 2.85
56 57 1.603739 GGGGCTTTTCCGCAGAAGT 60.604 57.895 0.00 0.00 46.30 3.01
57 58 1.581447 GGGCTTTTCCGCAGAAGTG 59.419 57.895 0.00 0.00 34.94 3.16
68 69 2.246841 CAGAAGTGCATGCCGAACA 58.753 52.632 16.68 0.00 0.00 3.18
69 70 0.592637 CAGAAGTGCATGCCGAACAA 59.407 50.000 16.68 0.00 0.00 2.83
70 71 1.001487 CAGAAGTGCATGCCGAACAAA 60.001 47.619 16.68 0.00 0.00 2.83
71 72 1.680735 AGAAGTGCATGCCGAACAAAA 59.319 42.857 16.68 0.00 0.00 2.44
72 73 2.100584 AGAAGTGCATGCCGAACAAAAA 59.899 40.909 16.68 0.00 0.00 1.94
97 98 9.684702 AAATATGACCTCCCTTTATTAGTAGGA 57.315 33.333 0.00 0.00 33.13 2.94
98 99 9.860393 AATATGACCTCCCTTTATTAGTAGGAT 57.140 33.333 0.00 0.00 33.13 3.24
101 102 9.684702 ATGACCTCCCTTTATTAGTAGGATAAA 57.315 33.333 0.00 0.00 33.13 1.40
102 103 9.684702 TGACCTCCCTTTATTAGTAGGATAAAT 57.315 33.333 0.00 0.00 33.13 1.40
103 104 9.945904 GACCTCCCTTTATTAGTAGGATAAATG 57.054 37.037 0.00 0.00 33.13 2.32
104 105 9.461734 ACCTCCCTTTATTAGTAGGATAAATGT 57.538 33.333 0.00 0.00 33.13 2.71
105 106 9.945904 CCTCCCTTTATTAGTAGGATAAATGTC 57.054 37.037 0.00 0.00 33.13 3.06
130 131 9.703892 TCATATTCTTTGTTATTGTTGGTTTGG 57.296 29.630 0.00 0.00 0.00 3.28
131 132 9.487790 CATATTCTTTGTTATTGTTGGTTTGGT 57.512 29.630 0.00 0.00 0.00 3.67
132 133 7.784633 ATTCTTTGTTATTGTTGGTTTGGTG 57.215 32.000 0.00 0.00 0.00 4.17
133 134 6.531503 TCTTTGTTATTGTTGGTTTGGTGA 57.468 33.333 0.00 0.00 0.00 4.02
134 135 6.936279 TCTTTGTTATTGTTGGTTTGGTGAA 58.064 32.000 0.00 0.00 0.00 3.18
135 136 7.386851 TCTTTGTTATTGTTGGTTTGGTGAAA 58.613 30.769 0.00 0.00 0.00 2.69
136 137 8.043710 TCTTTGTTATTGTTGGTTTGGTGAAAT 58.956 29.630 0.00 0.00 0.00 2.17
137 138 8.567285 TTTGTTATTGTTGGTTTGGTGAAATT 57.433 26.923 0.00 0.00 0.00 1.82
138 139 8.567285 TTGTTATTGTTGGTTTGGTGAAATTT 57.433 26.923 0.00 0.00 0.00 1.82
139 140 8.202745 TGTTATTGTTGGTTTGGTGAAATTTC 57.797 30.769 11.41 11.41 0.00 2.17
140 141 7.281100 TGTTATTGTTGGTTTGGTGAAATTTCC 59.719 33.333 15.48 6.89 0.00 3.13
141 142 5.428184 TTGTTGGTTTGGTGAAATTTCCT 57.572 34.783 15.48 0.00 0.00 3.36
142 143 6.546428 TTGTTGGTTTGGTGAAATTTCCTA 57.454 33.333 15.48 2.56 0.00 2.94
143 144 6.546428 TGTTGGTTTGGTGAAATTTCCTAA 57.454 33.333 15.48 8.24 0.00 2.69
144 145 7.130681 TGTTGGTTTGGTGAAATTTCCTAAT 57.869 32.000 15.48 0.00 0.00 1.73
145 146 8.251383 TGTTGGTTTGGTGAAATTTCCTAATA 57.749 30.769 15.48 0.00 0.00 0.98
146 147 8.145122 TGTTGGTTTGGTGAAATTTCCTAATAC 58.855 33.333 15.48 6.41 0.00 1.89
147 148 8.364894 GTTGGTTTGGTGAAATTTCCTAATACT 58.635 33.333 15.48 0.00 0.00 2.12
148 149 8.485578 TGGTTTGGTGAAATTTCCTAATACTT 57.514 30.769 15.48 0.00 0.00 2.24
149 150 9.589461 TGGTTTGGTGAAATTTCCTAATACTTA 57.411 29.630 15.48 0.00 0.00 2.24
157 158 9.801873 TGAAATTTCCTAATACTTAATTGCTGC 57.198 29.630 15.48 0.00 0.00 5.25
158 159 8.856490 AAATTTCCTAATACTTAATTGCTGCG 57.144 30.769 0.00 0.00 0.00 5.18
159 160 5.418310 TTCCTAATACTTAATTGCTGCGC 57.582 39.130 0.00 0.00 0.00 6.09
160 161 4.703897 TCCTAATACTTAATTGCTGCGCT 58.296 39.130 9.73 0.00 0.00 5.92
161 162 4.511454 TCCTAATACTTAATTGCTGCGCTG 59.489 41.667 9.73 10.04 0.00 5.18
162 163 2.763249 ATACTTAATTGCTGCGCTGC 57.237 45.000 29.76 29.76 0.00 5.25
163 164 1.737838 TACTTAATTGCTGCGCTGCT 58.262 45.000 34.26 20.24 0.00 4.24
164 165 1.737838 ACTTAATTGCTGCGCTGCTA 58.262 45.000 34.26 28.99 0.00 3.49
165 166 2.083774 ACTTAATTGCTGCGCTGCTAA 58.916 42.857 34.26 26.41 0.00 3.09
166 167 2.684881 ACTTAATTGCTGCGCTGCTAAT 59.315 40.909 34.26 27.20 0.00 1.73
167 168 3.129287 ACTTAATTGCTGCGCTGCTAATT 59.871 39.130 34.26 32.27 32.70 1.40
168 169 4.335315 ACTTAATTGCTGCGCTGCTAATTA 59.665 37.500 34.26 31.49 31.51 1.40
169 170 3.344904 AATTGCTGCGCTGCTAATTAG 57.655 42.857 34.26 11.54 0.00 1.73
170 171 2.022764 TTGCTGCGCTGCTAATTAGA 57.977 45.000 34.26 14.14 0.00 2.10
171 172 1.575244 TGCTGCGCTGCTAATTAGAG 58.425 50.000 34.26 10.06 0.00 2.43
172 173 0.234365 GCTGCGCTGCTAATTAGAGC 59.766 55.000 29.28 18.21 43.16 4.09
183 184 5.681337 GCTAATTAGAGCACCCAAGATTC 57.319 43.478 16.85 0.00 42.36 2.52
184 185 5.126067 GCTAATTAGAGCACCCAAGATTCA 58.874 41.667 16.85 0.00 42.36 2.57
185 186 5.008118 GCTAATTAGAGCACCCAAGATTCAC 59.992 44.000 16.85 0.00 42.36 3.18
186 187 3.350219 TTAGAGCACCCAAGATTCACC 57.650 47.619 0.00 0.00 0.00 4.02
187 188 0.329596 AGAGCACCCAAGATTCACCC 59.670 55.000 0.00 0.00 0.00 4.61
188 189 0.038166 GAGCACCCAAGATTCACCCA 59.962 55.000 0.00 0.00 0.00 4.51
189 190 0.482446 AGCACCCAAGATTCACCCAA 59.518 50.000 0.00 0.00 0.00 4.12
190 191 0.890683 GCACCCAAGATTCACCCAAG 59.109 55.000 0.00 0.00 0.00 3.61
191 192 1.547675 GCACCCAAGATTCACCCAAGA 60.548 52.381 0.00 0.00 0.00 3.02
192 193 2.885554 GCACCCAAGATTCACCCAAGAT 60.886 50.000 0.00 0.00 0.00 2.40
193 194 2.756760 CACCCAAGATTCACCCAAGATG 59.243 50.000 0.00 0.00 0.00 2.90
194 195 2.649312 ACCCAAGATTCACCCAAGATGA 59.351 45.455 0.00 0.00 0.00 2.92
195 196 3.285484 CCCAAGATTCACCCAAGATGAG 58.715 50.000 0.00 0.00 0.00 2.90
196 197 3.054139 CCCAAGATTCACCCAAGATGAGA 60.054 47.826 0.00 0.00 0.00 3.27
197 198 4.197750 CCAAGATTCACCCAAGATGAGAG 58.802 47.826 0.00 0.00 0.00 3.20
198 199 4.197750 CAAGATTCACCCAAGATGAGAGG 58.802 47.826 0.00 0.00 0.00 3.69
199 200 3.729108 AGATTCACCCAAGATGAGAGGA 58.271 45.455 0.00 0.00 0.00 3.71
200 201 4.305524 AGATTCACCCAAGATGAGAGGAT 58.694 43.478 0.00 0.00 0.00 3.24
201 202 3.920231 TTCACCCAAGATGAGAGGATG 57.080 47.619 0.00 0.00 0.00 3.51
202 203 3.120468 TCACCCAAGATGAGAGGATGA 57.880 47.619 0.00 0.00 0.00 2.92
203 204 3.662078 TCACCCAAGATGAGAGGATGAT 58.338 45.455 0.00 0.00 0.00 2.45
204 205 4.819610 TCACCCAAGATGAGAGGATGATA 58.180 43.478 0.00 0.00 0.00 2.15
205 206 5.218959 TCACCCAAGATGAGAGGATGATAA 58.781 41.667 0.00 0.00 0.00 1.75
206 207 5.667172 TCACCCAAGATGAGAGGATGATAAA 59.333 40.000 0.00 0.00 0.00 1.40
207 208 6.331042 TCACCCAAGATGAGAGGATGATAAAT 59.669 38.462 0.00 0.00 0.00 1.40
208 209 7.513781 TCACCCAAGATGAGAGGATGATAAATA 59.486 37.037 0.00 0.00 0.00 1.40
209 210 8.159447 CACCCAAGATGAGAGGATGATAAATAA 58.841 37.037 0.00 0.00 0.00 1.40
210 211 8.727149 ACCCAAGATGAGAGGATGATAAATAAA 58.273 33.333 0.00 0.00 0.00 1.40
211 212 9.578576 CCCAAGATGAGAGGATGATAAATAAAA 57.421 33.333 0.00 0.00 0.00 1.52
239 240 7.264373 ACTGATATAAATTTTGAAGAGCCCG 57.736 36.000 0.00 0.00 0.00 6.13
240 241 6.828785 ACTGATATAAATTTTGAAGAGCCCGT 59.171 34.615 0.00 0.00 0.00 5.28
241 242 7.026631 TGATATAAATTTTGAAGAGCCCGTG 57.973 36.000 0.00 0.00 0.00 4.94
242 243 4.718940 ATAAATTTTGAAGAGCCCGTGG 57.281 40.909 0.00 0.00 0.00 4.94
264 265 4.396854 GCACGGGCGTTCTACTAG 57.603 61.111 0.00 0.00 0.00 2.57
265 266 1.509923 GCACGGGCGTTCTACTAGT 59.490 57.895 0.00 0.00 0.00 2.57
266 267 0.108945 GCACGGGCGTTCTACTAGTT 60.109 55.000 0.00 0.00 0.00 2.24
267 268 1.133025 GCACGGGCGTTCTACTAGTTA 59.867 52.381 0.00 0.00 0.00 2.24
268 269 2.790387 CACGGGCGTTCTACTAGTTAC 58.210 52.381 0.00 0.00 0.00 2.50
269 270 2.162208 CACGGGCGTTCTACTAGTTACA 59.838 50.000 0.00 0.00 0.00 2.41
270 271 2.819608 ACGGGCGTTCTACTAGTTACAA 59.180 45.455 0.00 0.00 0.00 2.41
271 272 3.255642 ACGGGCGTTCTACTAGTTACAAA 59.744 43.478 0.00 0.00 0.00 2.83
272 273 4.082026 ACGGGCGTTCTACTAGTTACAAAT 60.082 41.667 0.00 0.00 0.00 2.32
273 274 5.125417 ACGGGCGTTCTACTAGTTACAAATA 59.875 40.000 0.00 0.00 0.00 1.40
274 275 6.183360 ACGGGCGTTCTACTAGTTACAAATAT 60.183 38.462 0.00 0.00 0.00 1.28
275 276 7.013274 ACGGGCGTTCTACTAGTTACAAATATA 59.987 37.037 0.00 0.00 0.00 0.86
276 277 7.862372 CGGGCGTTCTACTAGTTACAAATATAA 59.138 37.037 0.00 0.00 0.00 0.98
277 278 9.533253 GGGCGTTCTACTAGTTACAAATATAAA 57.467 33.333 0.00 0.00 0.00 1.40
301 302 9.855021 AAATGGAAGGTATTTAAGAAAACGATG 57.145 29.630 0.00 0.00 0.00 3.84
302 303 8.801882 ATGGAAGGTATTTAAGAAAACGATGA 57.198 30.769 0.00 0.00 0.00 2.92
303 304 8.801882 TGGAAGGTATTTAAGAAAACGATGAT 57.198 30.769 0.00 0.00 0.00 2.45
304 305 8.889717 TGGAAGGTATTTAAGAAAACGATGATC 58.110 33.333 0.00 0.00 0.00 2.92
305 306 8.889717 GGAAGGTATTTAAGAAAACGATGATCA 58.110 33.333 0.00 0.00 0.00 2.92
338 339 9.793259 TTCTTTTTCTGAATTATAGTGGTCAGT 57.207 29.630 0.00 0.00 38.87 3.41
339 340 9.219603 TCTTTTTCTGAATTATAGTGGTCAGTG 57.780 33.333 0.00 0.00 38.87 3.66
340 341 8.918202 TTTTTCTGAATTATAGTGGTCAGTGT 57.082 30.769 0.00 0.00 38.87 3.55
341 342 8.918202 TTTTCTGAATTATAGTGGTCAGTGTT 57.082 30.769 0.00 0.00 38.87 3.32
342 343 8.918202 TTTCTGAATTATAGTGGTCAGTGTTT 57.082 30.769 0.00 0.00 38.87 2.83
343 344 8.547967 TTCTGAATTATAGTGGTCAGTGTTTC 57.452 34.615 0.00 0.00 38.87 2.78
344 345 7.676004 TCTGAATTATAGTGGTCAGTGTTTCA 58.324 34.615 0.00 0.00 38.87 2.69
345 346 8.154203 TCTGAATTATAGTGGTCAGTGTTTCAA 58.846 33.333 0.00 0.00 38.87 2.69
346 347 8.094798 TGAATTATAGTGGTCAGTGTTTCAAC 57.905 34.615 0.00 0.00 0.00 3.18
347 348 7.936847 TGAATTATAGTGGTCAGTGTTTCAACT 59.063 33.333 0.00 0.00 0.00 3.16
348 349 8.691661 AATTATAGTGGTCAGTGTTTCAACTT 57.308 30.769 0.00 0.00 0.00 2.66
349 350 7.490962 TTATAGTGGTCAGTGTTTCAACTTG 57.509 36.000 0.00 0.00 0.00 3.16
350 351 3.950397 AGTGGTCAGTGTTTCAACTTGA 58.050 40.909 0.00 0.00 0.00 3.02
351 352 3.941483 AGTGGTCAGTGTTTCAACTTGAG 59.059 43.478 0.00 0.00 0.00 3.02
352 353 3.689649 GTGGTCAGTGTTTCAACTTGAGT 59.310 43.478 0.00 0.00 0.00 3.41
353 354 4.156008 GTGGTCAGTGTTTCAACTTGAGTT 59.844 41.667 0.00 0.00 39.12 3.01
354 355 4.764823 TGGTCAGTGTTTCAACTTGAGTTT 59.235 37.500 0.00 0.00 35.83 2.66
355 356 5.941058 TGGTCAGTGTTTCAACTTGAGTTTA 59.059 36.000 0.00 0.00 35.83 2.01
356 357 6.601613 TGGTCAGTGTTTCAACTTGAGTTTAT 59.398 34.615 0.00 0.00 35.83 1.40
357 358 7.771361 TGGTCAGTGTTTCAACTTGAGTTTATA 59.229 33.333 0.00 0.00 35.83 0.98
358 359 8.617809 GGTCAGTGTTTCAACTTGAGTTTATAA 58.382 33.333 0.00 0.00 35.83 0.98
365 366 9.968743 GTTTCAACTTGAGTTTATAATAGTCGG 57.031 33.333 0.00 0.00 35.83 4.79
366 367 8.712285 TTCAACTTGAGTTTATAATAGTCGGG 57.288 34.615 0.00 0.00 35.83 5.14
367 368 6.759827 TCAACTTGAGTTTATAATAGTCGGGC 59.240 38.462 0.00 0.00 35.83 6.13
368 369 6.481434 ACTTGAGTTTATAATAGTCGGGCT 57.519 37.500 0.00 0.00 0.00 5.19
369 370 6.885922 ACTTGAGTTTATAATAGTCGGGCTT 58.114 36.000 0.00 0.00 0.00 4.35
370 371 6.761714 ACTTGAGTTTATAATAGTCGGGCTTG 59.238 38.462 0.00 0.00 0.00 4.01
371 372 5.054477 TGAGTTTATAATAGTCGGGCTTGC 58.946 41.667 0.00 0.00 0.00 4.01
372 373 4.386711 AGTTTATAATAGTCGGGCTTGCC 58.613 43.478 2.49 2.49 0.00 4.52
373 374 2.736144 TATAATAGTCGGGCTTGCCG 57.264 50.000 5.49 0.00 0.00 5.69
374 375 1.045407 ATAATAGTCGGGCTTGCCGA 58.955 50.000 5.49 0.00 37.35 5.54
375 376 1.045407 TAATAGTCGGGCTTGCCGAT 58.955 50.000 5.86 0.00 41.71 4.18
376 377 0.180406 AATAGTCGGGCTTGCCGATT 59.820 50.000 5.86 4.65 41.71 3.34
377 378 0.180406 ATAGTCGGGCTTGCCGATTT 59.820 50.000 5.86 1.38 41.71 2.17
378 379 0.461339 TAGTCGGGCTTGCCGATTTC 60.461 55.000 5.86 0.00 41.71 2.17
379 380 2.817834 TCGGGCTTGCCGATTTCG 60.818 61.111 5.49 3.43 34.66 3.46
380 381 4.536687 CGGGCTTGCCGATTTCGC 62.537 66.667 5.49 0.00 38.18 4.70
381 382 3.134127 GGGCTTGCCGATTTCGCT 61.134 61.111 5.49 0.00 38.18 4.93
382 383 2.700773 GGGCTTGCCGATTTCGCTT 61.701 57.895 5.49 0.00 38.18 4.68
383 384 1.212751 GGCTTGCCGATTTCGCTTT 59.787 52.632 0.00 0.00 38.18 3.51
384 385 0.450184 GGCTTGCCGATTTCGCTTTA 59.550 50.000 0.00 0.00 38.18 1.85
385 386 1.135517 GGCTTGCCGATTTCGCTTTAA 60.136 47.619 0.00 0.00 38.18 1.52
386 387 2.591133 GCTTGCCGATTTCGCTTTAAA 58.409 42.857 0.00 0.00 38.18 1.52
387 388 2.983803 GCTTGCCGATTTCGCTTTAAAA 59.016 40.909 0.00 0.00 38.18 1.52
388 389 3.181544 GCTTGCCGATTTCGCTTTAAAAC 60.182 43.478 0.00 0.00 38.18 2.43
389 390 2.576406 TGCCGATTTCGCTTTAAAACG 58.424 42.857 4.64 4.64 38.18 3.60
393 394 4.973848 CGATTTCGCTTTAAAACGGATG 57.026 40.909 10.82 0.00 32.83 3.51
394 395 3.237433 CGATTTCGCTTTAAAACGGATGC 59.763 43.478 10.82 0.00 32.83 3.91
395 396 3.627732 TTTCGCTTTAAAACGGATGCA 57.372 38.095 10.82 0.00 0.00 3.96
396 397 3.840890 TTCGCTTTAAAACGGATGCAT 57.159 38.095 10.82 0.00 0.00 3.96
397 398 3.129852 TCGCTTTAAAACGGATGCATG 57.870 42.857 2.46 0.00 0.00 4.06
398 399 2.486203 TCGCTTTAAAACGGATGCATGT 59.514 40.909 2.46 0.00 0.00 3.21
399 400 2.845967 CGCTTTAAAACGGATGCATGTC 59.154 45.455 2.46 0.00 0.00 3.06
400 401 3.179048 GCTTTAAAACGGATGCATGTCC 58.821 45.455 2.46 0.00 34.82 4.02
406 407 3.501396 GGATGCATGTCCGGTGTG 58.499 61.111 2.46 0.00 0.00 3.82
407 408 2.764314 GGATGCATGTCCGGTGTGC 61.764 63.158 2.46 17.42 39.26 4.57
408 409 1.746615 GATGCATGTCCGGTGTGCT 60.747 57.895 22.15 12.22 39.52 4.40
409 410 1.303561 ATGCATGTCCGGTGTGCTT 60.304 52.632 22.15 16.08 39.52 3.91
410 411 0.035534 ATGCATGTCCGGTGTGCTTA 60.036 50.000 22.15 9.38 39.52 3.09
411 412 0.953471 TGCATGTCCGGTGTGCTTAC 60.953 55.000 22.15 5.35 39.52 2.34
412 413 1.644786 GCATGTCCGGTGTGCTTACC 61.645 60.000 17.12 0.44 36.02 2.85
413 414 0.321210 CATGTCCGGTGTGCTTACCA 60.321 55.000 0.00 0.00 40.89 3.25
414 415 0.618458 ATGTCCGGTGTGCTTACCAT 59.382 50.000 0.00 0.00 40.89 3.55
415 416 1.268066 TGTCCGGTGTGCTTACCATA 58.732 50.000 0.00 0.00 40.89 2.74
416 417 1.624312 TGTCCGGTGTGCTTACCATAA 59.376 47.619 0.00 0.00 40.89 1.90
417 418 2.237643 TGTCCGGTGTGCTTACCATAAT 59.762 45.455 0.00 0.00 40.89 1.28
418 419 2.870411 GTCCGGTGTGCTTACCATAATC 59.130 50.000 0.00 0.00 40.89 1.75
419 420 1.864711 CCGGTGTGCTTACCATAATCG 59.135 52.381 9.98 0.00 40.89 3.34
420 421 2.482316 CCGGTGTGCTTACCATAATCGA 60.482 50.000 9.98 0.00 40.89 3.59
421 422 3.390135 CGGTGTGCTTACCATAATCGAT 58.610 45.455 9.98 0.00 40.89 3.59
422 423 3.184379 CGGTGTGCTTACCATAATCGATG 59.816 47.826 0.00 0.00 40.89 3.84
423 424 4.377021 GGTGTGCTTACCATAATCGATGA 58.623 43.478 0.00 0.00 40.54 2.92
424 425 4.449068 GGTGTGCTTACCATAATCGATGAG 59.551 45.833 0.00 0.00 40.54 2.90
425 426 4.449068 GTGTGCTTACCATAATCGATGAGG 59.551 45.833 0.00 3.96 37.82 3.86
426 427 3.433615 GTGCTTACCATAATCGATGAGGC 59.566 47.826 0.00 0.00 37.82 4.70
430 431 5.182001 GCTTACCATAATCGATGAGGCAATT 59.818 40.000 0.00 0.00 37.82 2.32
445 446 6.222389 TGAGGCAATTCAAAACAATAAGGTG 58.778 36.000 0.00 0.00 0.00 4.00
454 455 6.577103 TCAAAACAATAAGGTGTGCATCAAA 58.423 32.000 0.00 0.00 0.00 2.69
495 496 1.594833 GTCGGCATGGTACTGTCCA 59.405 57.895 0.00 2.26 42.01 4.02
496 497 0.460284 GTCGGCATGGTACTGTCCAG 60.460 60.000 0.00 0.00 41.05 3.86
497 498 1.153369 CGGCATGGTACTGTCCAGG 60.153 63.158 0.00 6.58 41.05 4.45
498 499 1.899437 CGGCATGGTACTGTCCAGGT 61.899 60.000 10.85 0.00 40.77 4.00
499 500 1.200519 GGCATGGTACTGTCCAGGTA 58.799 55.000 10.85 0.00 40.77 3.08
500 501 1.557832 GGCATGGTACTGTCCAGGTAA 59.442 52.381 10.85 0.00 40.77 2.85
501 502 2.026636 GGCATGGTACTGTCCAGGTAAA 60.027 50.000 10.85 0.00 40.77 2.01
502 503 3.007635 GCATGGTACTGTCCAGGTAAAC 58.992 50.000 10.85 0.00 40.77 2.01
503 504 3.606687 CATGGTACTGTCCAGGTAAACC 58.393 50.000 0.00 0.00 41.05 3.27
504 505 1.619827 TGGTACTGTCCAGGTAAACCG 59.380 52.381 0.00 0.00 42.08 4.44
505 506 1.895131 GGTACTGTCCAGGTAAACCGA 59.105 52.381 0.00 0.00 42.08 4.69
506 507 2.094338 GGTACTGTCCAGGTAAACCGAG 60.094 54.545 0.00 0.00 42.08 4.63
507 508 2.005370 ACTGTCCAGGTAAACCGAGA 57.995 50.000 0.00 0.00 42.08 4.04
508 509 1.893801 ACTGTCCAGGTAAACCGAGAG 59.106 52.381 0.00 0.00 42.08 3.20
509 510 0.606604 TGTCCAGGTAAACCGAGAGC 59.393 55.000 0.00 0.00 42.08 4.09
510 511 0.458025 GTCCAGGTAAACCGAGAGCG 60.458 60.000 0.00 0.00 42.08 5.03
538 539 0.899720 TTGCGGGGTAAATCGAGAGT 59.100 50.000 0.00 0.00 0.00 3.24
542 543 1.749634 CGGGGTAAATCGAGAGTGAGT 59.250 52.381 0.00 0.00 0.00 3.41
595 596 1.352622 AACTGGAGGCTGGTGGTTGA 61.353 55.000 0.00 0.00 0.00 3.18
606 607 1.017177 GGTGGTTGATTCTGCGCGTA 61.017 55.000 8.43 0.71 0.00 4.42
610 611 1.807981 TTGATTCTGCGCGTACCGG 60.808 57.895 8.43 0.00 37.44 5.28
622 623 1.816679 GTACCGGGTGGGCGATTTC 60.817 63.158 10.66 0.00 40.62 2.17
692 693 1.485032 CGATTACGGGGCTTGCGTAC 61.485 60.000 0.00 0.00 35.72 3.67
775 777 2.108362 CCCGCGATAACACCTCCC 59.892 66.667 8.23 0.00 0.00 4.30
960 990 2.661866 CGGGGGCGCTCGATTTAG 60.662 66.667 19.73 0.00 0.00 1.85
1043 1661 0.179000 GAGGAGCATCGATGGTGGTT 59.821 55.000 32.96 17.94 38.85 3.67
1135 1761 3.286751 GCACGGCAACAGAGGCAA 61.287 61.111 0.00 0.00 0.00 4.52
1164 1799 3.425578 GTGAGATCACACCGTCCTG 57.574 57.895 11.80 0.00 45.75 3.86
1209 1852 4.759183 GCAAAAACAGAGAGGAGTCTGATT 59.241 41.667 7.85 0.00 46.02 2.57
1569 3866 2.223249 GGTATGTGCCTGCATTTACACG 60.223 50.000 13.12 0.00 35.79 4.49
1604 3912 7.014422 CCCTTAGTTAGTTCTCTATGGATCGTT 59.986 40.741 0.00 0.00 35.08 3.85
1805 4143 7.920160 TGTTGTTGATTGATATGCAGACTTA 57.080 32.000 0.00 0.00 0.00 2.24
1956 4296 8.405531 TCAATATATTGTTGCTTGCCTAACTTC 58.594 33.333 21.89 0.00 38.84 3.01
2314 4676 3.117813 TGATTGGCATGGTGATGATCTGA 60.118 43.478 0.00 0.00 0.00 3.27
2485 4848 7.726738 TGTGTATATGGTAGTTATGGACTGCTA 59.273 37.037 0.00 0.00 40.44 3.49
2823 5272 2.005606 TTGGCTTGCAGGGTTCAGGA 62.006 55.000 0.00 0.00 0.00 3.86
2851 5300 2.851263 TGTGACGTTGGCTTAGGAAT 57.149 45.000 0.00 0.00 0.00 3.01
2886 5335 6.624861 GCTCCATTTACGATTGGTTCATTTCA 60.625 38.462 0.00 0.00 34.48 2.69
2906 5355 2.856628 CGTGCTCTAGCCCCGCATA 61.857 63.158 0.00 0.00 41.18 3.14
3029 5478 2.125310 CAACGGGCCGCTCATGTA 60.125 61.111 28.71 0.00 0.00 2.29
3060 5509 0.107361 TATCGGAGCTGTCGGAGTCA 60.107 55.000 0.00 0.00 35.65 3.41
3063 5512 1.444553 GGAGCTGTCGGAGTCAACG 60.445 63.158 0.00 0.00 0.00 4.10
3068 5517 0.243907 CTGTCGGAGTCAACGGTCAT 59.756 55.000 0.00 0.00 0.00 3.06
3180 5629 5.763876 AGGTAGTGAAGCCTCAGTTAATT 57.236 39.130 0.00 0.00 36.58 1.40
3256 5705 4.646960 GCGTTTGCAAACTGAAAATGTTT 58.353 34.783 33.03 0.00 42.15 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.464734 TCAACCTGGCACGTGAAAAA 58.535 45.000 22.23 0.00 0.00 1.94
5 6 1.686355 ATCAACCTGGCACGTGAAAA 58.314 45.000 22.23 2.06 0.00 2.29
7 8 1.202758 AGAATCAACCTGGCACGTGAA 60.203 47.619 22.23 5.36 0.00 3.18
8 9 0.396435 AGAATCAACCTGGCACGTGA 59.604 50.000 22.23 0.00 0.00 4.35
9 10 2.093306 TAGAATCAACCTGGCACGTG 57.907 50.000 12.28 12.28 0.00 4.49
10 11 2.851263 TTAGAATCAACCTGGCACGT 57.149 45.000 0.00 0.00 0.00 4.49
11 12 4.414852 CATTTTAGAATCAACCTGGCACG 58.585 43.478 0.00 0.00 0.00 5.34
12 13 4.462483 TCCATTTTAGAATCAACCTGGCAC 59.538 41.667 0.00 0.00 0.00 5.01
13 14 4.671831 TCCATTTTAGAATCAACCTGGCA 58.328 39.130 0.00 0.00 0.00 4.92
14 15 5.859205 ATCCATTTTAGAATCAACCTGGC 57.141 39.130 0.00 0.00 0.00 4.85
15 16 6.491403 CCCTATCCATTTTAGAATCAACCTGG 59.509 42.308 0.00 0.00 0.00 4.45
16 17 6.491403 CCCCTATCCATTTTAGAATCAACCTG 59.509 42.308 0.00 0.00 0.00 4.00
17 18 6.614657 CCCCTATCCATTTTAGAATCAACCT 58.385 40.000 0.00 0.00 0.00 3.50
18 19 5.243954 GCCCCTATCCATTTTAGAATCAACC 59.756 44.000 0.00 0.00 0.00 3.77
19 20 6.071320 AGCCCCTATCCATTTTAGAATCAAC 58.929 40.000 0.00 0.00 0.00 3.18
20 21 6.279813 AGCCCCTATCCATTTTAGAATCAA 57.720 37.500 0.00 0.00 0.00 2.57
21 22 5.930209 AGCCCCTATCCATTTTAGAATCA 57.070 39.130 0.00 0.00 0.00 2.57
22 23 7.255977 GGAAAAGCCCCTATCCATTTTAGAATC 60.256 40.741 0.00 0.00 32.08 2.52
23 24 6.554982 GGAAAAGCCCCTATCCATTTTAGAAT 59.445 38.462 0.00 0.00 32.08 2.40
24 25 5.897250 GGAAAAGCCCCTATCCATTTTAGAA 59.103 40.000 0.00 0.00 32.08 2.10
25 26 5.454966 GGAAAAGCCCCTATCCATTTTAGA 58.545 41.667 0.00 0.00 32.08 2.10
26 27 4.278419 CGGAAAAGCCCCTATCCATTTTAG 59.722 45.833 0.00 0.00 32.08 1.85
27 28 4.211920 CGGAAAAGCCCCTATCCATTTTA 58.788 43.478 0.00 0.00 32.08 1.52
28 29 3.031013 CGGAAAAGCCCCTATCCATTTT 58.969 45.455 0.00 0.00 32.08 1.82
29 30 2.666317 CGGAAAAGCCCCTATCCATTT 58.334 47.619 0.00 0.00 32.08 2.32
30 31 1.754201 GCGGAAAAGCCCCTATCCATT 60.754 52.381 0.00 0.00 32.08 3.16
31 32 0.178990 GCGGAAAAGCCCCTATCCAT 60.179 55.000 0.00 0.00 32.08 3.41
32 33 1.226262 GCGGAAAAGCCCCTATCCA 59.774 57.895 0.00 0.00 32.08 3.41
33 34 0.819666 CTGCGGAAAAGCCCCTATCC 60.820 60.000 0.00 0.00 36.02 2.59
34 35 0.180406 TCTGCGGAAAAGCCCCTATC 59.820 55.000 0.00 0.00 36.02 2.08
35 36 0.623723 TTCTGCGGAAAAGCCCCTAT 59.376 50.000 5.22 0.00 36.02 2.57
36 37 0.035439 CTTCTGCGGAAAAGCCCCTA 60.035 55.000 9.73 0.00 36.02 3.53
37 38 1.303643 CTTCTGCGGAAAAGCCCCT 60.304 57.895 9.73 0.00 36.02 4.79
38 39 1.603739 ACTTCTGCGGAAAAGCCCC 60.604 57.895 9.73 0.00 36.02 5.80
39 40 1.581447 CACTTCTGCGGAAAAGCCC 59.419 57.895 9.73 0.00 36.02 5.19
40 41 1.081175 GCACTTCTGCGGAAAAGCC 60.081 57.895 16.80 1.01 36.02 4.35
41 42 4.541020 GCACTTCTGCGGAAAAGC 57.459 55.556 9.73 12.12 32.44 3.51
49 50 1.154150 GTTCGGCATGCACTTCTGC 60.154 57.895 21.36 1.25 44.52 4.26
50 51 0.592637 TTGTTCGGCATGCACTTCTG 59.407 50.000 21.36 1.51 0.00 3.02
51 52 1.317613 TTTGTTCGGCATGCACTTCT 58.682 45.000 21.36 0.00 0.00 2.85
52 53 2.132740 TTTTGTTCGGCATGCACTTC 57.867 45.000 21.36 7.58 0.00 3.01
53 54 2.593346 TTTTTGTTCGGCATGCACTT 57.407 40.000 21.36 0.00 0.00 3.16
71 72 9.684702 TCCTACTAATAAAGGGAGGTCATATTT 57.315 33.333 0.00 0.00 35.12 1.40
72 73 9.860393 ATCCTACTAATAAAGGGAGGTCATATT 57.140 33.333 0.00 0.00 35.12 1.28
75 76 9.684702 TTTATCCTACTAATAAAGGGAGGTCAT 57.315 33.333 0.00 0.00 35.12 3.06
76 77 9.684702 ATTTATCCTACTAATAAAGGGAGGTCA 57.315 33.333 0.00 0.00 35.12 4.02
77 78 9.945904 CATTTATCCTACTAATAAAGGGAGGTC 57.054 37.037 0.00 0.00 35.12 3.85
78 79 9.461734 ACATTTATCCTACTAATAAAGGGAGGT 57.538 33.333 5.57 0.00 35.66 3.85
79 80 9.945904 GACATTTATCCTACTAATAAAGGGAGG 57.054 37.037 5.57 0.00 35.66 4.30
104 105 9.703892 CCAAACCAACAATAACAAAGAATATGA 57.296 29.630 0.00 0.00 0.00 2.15
105 106 9.487790 ACCAAACCAACAATAACAAAGAATATG 57.512 29.630 0.00 0.00 0.00 1.78
106 107 9.487790 CACCAAACCAACAATAACAAAGAATAT 57.512 29.630 0.00 0.00 0.00 1.28
107 108 8.696374 TCACCAAACCAACAATAACAAAGAATA 58.304 29.630 0.00 0.00 0.00 1.75
108 109 7.560368 TCACCAAACCAACAATAACAAAGAAT 58.440 30.769 0.00 0.00 0.00 2.40
109 110 6.936279 TCACCAAACCAACAATAACAAAGAA 58.064 32.000 0.00 0.00 0.00 2.52
110 111 6.531503 TCACCAAACCAACAATAACAAAGA 57.468 33.333 0.00 0.00 0.00 2.52
111 112 7.602517 TTTCACCAAACCAACAATAACAAAG 57.397 32.000 0.00 0.00 0.00 2.77
112 113 8.567285 AATTTCACCAAACCAACAATAACAAA 57.433 26.923 0.00 0.00 0.00 2.83
113 114 8.567285 AAATTTCACCAAACCAACAATAACAA 57.433 26.923 0.00 0.00 0.00 2.83
114 115 7.281100 GGAAATTTCACCAAACCAACAATAACA 59.719 33.333 19.49 0.00 0.00 2.41
115 116 7.497579 AGGAAATTTCACCAAACCAACAATAAC 59.502 33.333 19.49 0.00 0.00 1.89
116 117 7.569240 AGGAAATTTCACCAAACCAACAATAA 58.431 30.769 19.49 0.00 0.00 1.40
117 118 7.130681 AGGAAATTTCACCAAACCAACAATA 57.869 32.000 19.49 0.00 0.00 1.90
118 119 6.000246 AGGAAATTTCACCAAACCAACAAT 58.000 33.333 19.49 0.00 0.00 2.71
119 120 5.428184 AGGAAATTTCACCAAACCAACAA 57.572 34.783 19.49 0.00 0.00 2.83
120 121 6.546428 TTAGGAAATTTCACCAAACCAACA 57.454 33.333 19.49 0.00 0.00 3.33
121 122 8.364894 AGTATTAGGAAATTTCACCAAACCAAC 58.635 33.333 19.49 5.98 0.00 3.77
122 123 8.485578 AGTATTAGGAAATTTCACCAAACCAA 57.514 30.769 19.49 0.00 0.00 3.67
123 124 8.485578 AAGTATTAGGAAATTTCACCAAACCA 57.514 30.769 19.49 0.00 0.00 3.67
131 132 9.801873 GCAGCAATTAAGTATTAGGAAATTTCA 57.198 29.630 19.49 0.00 0.00 2.69
132 133 8.958043 CGCAGCAATTAAGTATTAGGAAATTTC 58.042 33.333 9.83 9.83 0.00 2.17
133 134 8.856490 CGCAGCAATTAAGTATTAGGAAATTT 57.144 30.769 0.00 0.00 0.00 1.82
153 154 0.234365 GCTCTAATTAGCAGCGCAGC 59.766 55.000 18.03 18.03 45.12 5.25
161 162 5.008118 GTGAATCTTGGGTGCTCTAATTAGC 59.992 44.000 7.67 0.06 43.08 3.09
162 163 5.529060 GGTGAATCTTGGGTGCTCTAATTAG 59.471 44.000 6.11 6.11 0.00 1.73
163 164 5.437060 GGTGAATCTTGGGTGCTCTAATTA 58.563 41.667 0.00 0.00 0.00 1.40
164 165 4.273318 GGTGAATCTTGGGTGCTCTAATT 58.727 43.478 0.00 0.00 0.00 1.40
165 166 3.372025 GGGTGAATCTTGGGTGCTCTAAT 60.372 47.826 0.00 0.00 0.00 1.73
166 167 2.026262 GGGTGAATCTTGGGTGCTCTAA 60.026 50.000 0.00 0.00 0.00 2.10
167 168 1.559682 GGGTGAATCTTGGGTGCTCTA 59.440 52.381 0.00 0.00 0.00 2.43
168 169 0.329596 GGGTGAATCTTGGGTGCTCT 59.670 55.000 0.00 0.00 0.00 4.09
169 170 0.038166 TGGGTGAATCTTGGGTGCTC 59.962 55.000 0.00 0.00 0.00 4.26
170 171 0.482446 TTGGGTGAATCTTGGGTGCT 59.518 50.000 0.00 0.00 0.00 4.40
171 172 0.890683 CTTGGGTGAATCTTGGGTGC 59.109 55.000 0.00 0.00 0.00 5.01
172 173 2.584835 TCTTGGGTGAATCTTGGGTG 57.415 50.000 0.00 0.00 0.00 4.61
173 174 2.649312 TCATCTTGGGTGAATCTTGGGT 59.351 45.455 0.00 0.00 0.00 4.51
174 175 3.054139 TCTCATCTTGGGTGAATCTTGGG 60.054 47.826 0.00 0.00 0.00 4.12
175 176 4.197750 CTCTCATCTTGGGTGAATCTTGG 58.802 47.826 0.00 0.00 0.00 3.61
176 177 4.080695 TCCTCTCATCTTGGGTGAATCTTG 60.081 45.833 0.00 0.00 0.00 3.02
177 178 4.107072 TCCTCTCATCTTGGGTGAATCTT 58.893 43.478 0.00 0.00 0.00 2.40
178 179 3.729108 TCCTCTCATCTTGGGTGAATCT 58.271 45.455 0.00 0.00 0.00 2.40
179 180 4.102210 TCATCCTCTCATCTTGGGTGAATC 59.898 45.833 0.00 0.00 37.97 2.52
180 181 4.042884 TCATCCTCTCATCTTGGGTGAAT 58.957 43.478 0.00 0.00 37.97 2.57
181 182 3.453868 TCATCCTCTCATCTTGGGTGAA 58.546 45.455 0.00 0.00 37.97 3.18
182 183 3.120468 TCATCCTCTCATCTTGGGTGA 57.880 47.619 0.00 0.00 38.52 4.02
183 184 5.557576 TTATCATCCTCTCATCTTGGGTG 57.442 43.478 0.00 0.00 33.51 4.61
184 185 6.776887 ATTTATCATCCTCTCATCTTGGGT 57.223 37.500 0.00 0.00 0.00 4.51
185 186 9.578576 TTTTATTTATCATCCTCTCATCTTGGG 57.421 33.333 0.00 0.00 0.00 4.12
213 214 9.003658 CGGGCTCTTCAAAATTTATATCAGTAT 57.996 33.333 0.00 0.00 0.00 2.12
214 215 7.990886 ACGGGCTCTTCAAAATTTATATCAGTA 59.009 33.333 0.00 0.00 0.00 2.74
215 216 6.828785 ACGGGCTCTTCAAAATTTATATCAGT 59.171 34.615 0.00 0.00 0.00 3.41
216 217 7.134815 CACGGGCTCTTCAAAATTTATATCAG 58.865 38.462 0.00 0.00 0.00 2.90
217 218 6.039270 CCACGGGCTCTTCAAAATTTATATCA 59.961 38.462 0.00 0.00 0.00 2.15
218 219 6.438763 CCACGGGCTCTTCAAAATTTATATC 58.561 40.000 0.00 0.00 0.00 1.63
219 220 5.221244 GCCACGGGCTCTTCAAAATTTATAT 60.221 40.000 7.58 0.00 46.69 0.86
220 221 4.097286 GCCACGGGCTCTTCAAAATTTATA 59.903 41.667 7.58 0.00 46.69 0.98
221 222 3.119137 GCCACGGGCTCTTCAAAATTTAT 60.119 43.478 7.58 0.00 46.69 1.40
222 223 2.230266 GCCACGGGCTCTTCAAAATTTA 59.770 45.455 7.58 0.00 46.69 1.40
223 224 1.000843 GCCACGGGCTCTTCAAAATTT 59.999 47.619 7.58 0.00 46.69 1.82
224 225 0.603065 GCCACGGGCTCTTCAAAATT 59.397 50.000 7.58 0.00 46.69 1.82
225 226 2.267045 GCCACGGGCTCTTCAAAAT 58.733 52.632 7.58 0.00 46.69 1.82
226 227 3.758172 GCCACGGGCTCTTCAAAA 58.242 55.556 7.58 0.00 46.69 2.44
247 248 0.108945 AACTAGTAGAACGCCCGTGC 60.109 55.000 3.59 0.00 0.00 5.34
248 249 2.162208 TGTAACTAGTAGAACGCCCGTG 59.838 50.000 3.59 0.00 0.00 4.94
249 250 2.436417 TGTAACTAGTAGAACGCCCGT 58.564 47.619 3.59 0.00 0.00 5.28
250 251 3.492421 TTGTAACTAGTAGAACGCCCG 57.508 47.619 3.59 0.00 0.00 6.13
251 252 9.533253 TTTATATTTGTAACTAGTAGAACGCCC 57.467 33.333 3.59 0.00 0.00 6.13
275 276 9.855021 CATCGTTTTCTTAAATACCTTCCATTT 57.145 29.630 0.00 0.00 0.00 2.32
276 277 9.238368 TCATCGTTTTCTTAAATACCTTCCATT 57.762 29.630 0.00 0.00 0.00 3.16
277 278 8.801882 TCATCGTTTTCTTAAATACCTTCCAT 57.198 30.769 0.00 0.00 0.00 3.41
278 279 8.801882 ATCATCGTTTTCTTAAATACCTTCCA 57.198 30.769 0.00 0.00 0.00 3.53
279 280 8.889717 TGATCATCGTTTTCTTAAATACCTTCC 58.110 33.333 0.00 0.00 0.00 3.46
312 313 9.793259 ACTGACCACTATAATTCAGAAAAAGAA 57.207 29.630 4.51 0.00 38.19 2.52
313 314 9.219603 CACTGACCACTATAATTCAGAAAAAGA 57.780 33.333 4.51 0.00 38.19 2.52
314 315 9.003658 ACACTGACCACTATAATTCAGAAAAAG 57.996 33.333 4.51 0.00 38.19 2.27
315 316 8.918202 ACACTGACCACTATAATTCAGAAAAA 57.082 30.769 4.51 0.00 38.19 1.94
316 317 8.918202 AACACTGACCACTATAATTCAGAAAA 57.082 30.769 4.51 0.00 38.19 2.29
317 318 8.918202 AAACACTGACCACTATAATTCAGAAA 57.082 30.769 4.51 0.00 38.19 2.52
318 319 8.154203 TGAAACACTGACCACTATAATTCAGAA 58.846 33.333 4.51 0.00 38.19 3.02
319 320 7.676004 TGAAACACTGACCACTATAATTCAGA 58.324 34.615 4.51 0.00 38.19 3.27
320 321 7.905604 TGAAACACTGACCACTATAATTCAG 57.094 36.000 0.00 0.00 41.14 3.02
321 322 7.936847 AGTTGAAACACTGACCACTATAATTCA 59.063 33.333 0.00 0.00 0.00 2.57
322 323 8.324163 AGTTGAAACACTGACCACTATAATTC 57.676 34.615 0.00 0.00 0.00 2.17
323 324 8.567948 CAAGTTGAAACACTGACCACTATAATT 58.432 33.333 0.00 0.00 0.00 1.40
324 325 7.936847 TCAAGTTGAAACACTGACCACTATAAT 59.063 33.333 2.20 0.00 0.00 1.28
325 326 7.276658 TCAAGTTGAAACACTGACCACTATAA 58.723 34.615 2.20 0.00 0.00 0.98
326 327 6.822442 TCAAGTTGAAACACTGACCACTATA 58.178 36.000 2.20 0.00 0.00 1.31
327 328 5.680619 TCAAGTTGAAACACTGACCACTAT 58.319 37.500 2.20 0.00 0.00 2.12
328 329 5.092554 TCAAGTTGAAACACTGACCACTA 57.907 39.130 2.20 0.00 0.00 2.74
329 330 3.941483 CTCAAGTTGAAACACTGACCACT 59.059 43.478 7.06 0.00 0.00 4.00
330 331 3.689649 ACTCAAGTTGAAACACTGACCAC 59.310 43.478 7.06 0.00 0.00 4.16
331 332 3.950397 ACTCAAGTTGAAACACTGACCA 58.050 40.909 7.06 0.00 0.00 4.02
332 333 4.965119 AACTCAAGTTGAAACACTGACC 57.035 40.909 7.06 0.00 36.80 4.02
339 340 9.968743 CCGACTATTATAAACTCAAGTTGAAAC 57.031 33.333 7.06 0.00 38.44 2.78
340 341 9.158233 CCCGACTATTATAAACTCAAGTTGAAA 57.842 33.333 7.06 0.00 38.44 2.69
341 342 7.279313 GCCCGACTATTATAAACTCAAGTTGAA 59.721 37.037 7.06 0.00 38.44 2.69
342 343 6.759827 GCCCGACTATTATAAACTCAAGTTGA 59.240 38.462 5.25 5.25 38.44 3.18
343 344 6.761714 AGCCCGACTATTATAAACTCAAGTTG 59.238 38.462 0.00 0.00 38.44 3.16
344 345 6.885922 AGCCCGACTATTATAAACTCAAGTT 58.114 36.000 0.00 0.00 40.50 2.66
345 346 6.481434 AGCCCGACTATTATAAACTCAAGT 57.519 37.500 0.00 0.00 0.00 3.16
346 347 6.292919 GCAAGCCCGACTATTATAAACTCAAG 60.293 42.308 0.00 0.00 0.00 3.02
347 348 5.526111 GCAAGCCCGACTATTATAAACTCAA 59.474 40.000 0.00 0.00 0.00 3.02
348 349 5.054477 GCAAGCCCGACTATTATAAACTCA 58.946 41.667 0.00 0.00 0.00 3.41
349 350 4.451435 GGCAAGCCCGACTATTATAAACTC 59.549 45.833 0.00 0.00 0.00 3.01
350 351 4.386711 GGCAAGCCCGACTATTATAAACT 58.613 43.478 0.00 0.00 0.00 2.66
351 352 4.744136 GGCAAGCCCGACTATTATAAAC 57.256 45.455 0.00 0.00 0.00 2.01
364 365 2.212900 AAAGCGAAATCGGCAAGCCC 62.213 55.000 5.34 0.00 40.23 5.19
365 366 0.450184 TAAAGCGAAATCGGCAAGCC 59.550 50.000 0.00 0.00 40.23 4.35
366 367 2.256445 TTAAAGCGAAATCGGCAAGC 57.744 45.000 4.84 0.00 40.23 4.01
367 368 3.057609 CGTTTTAAAGCGAAATCGGCAAG 59.942 43.478 18.26 0.00 40.23 4.01
368 369 2.974536 CGTTTTAAAGCGAAATCGGCAA 59.025 40.909 18.26 0.00 40.23 4.52
369 370 2.576406 CGTTTTAAAGCGAAATCGGCA 58.424 42.857 18.26 0.00 40.23 5.69
370 371 1.908889 CCGTTTTAAAGCGAAATCGGC 59.091 47.619 23.70 0.00 41.92 5.54
371 372 3.458779 TCCGTTTTAAAGCGAAATCGG 57.541 42.857 23.70 17.84 46.20 4.18
372 373 3.237433 GCATCCGTTTTAAAGCGAAATCG 59.763 43.478 23.70 8.38 43.27 3.34
373 374 4.162812 TGCATCCGTTTTAAAGCGAAATC 58.837 39.130 23.70 11.42 34.38 2.17
374 375 4.167554 TGCATCCGTTTTAAAGCGAAAT 57.832 36.364 23.70 14.23 34.38 2.17
375 376 3.627732 TGCATCCGTTTTAAAGCGAAA 57.372 38.095 23.70 12.72 34.38 3.46
376 377 3.057876 ACATGCATCCGTTTTAAAGCGAA 60.058 39.130 23.70 5.87 34.38 4.70
377 378 2.486203 ACATGCATCCGTTTTAAAGCGA 59.514 40.909 23.70 11.46 34.38 4.93
378 379 2.845967 GACATGCATCCGTTTTAAAGCG 59.154 45.455 16.46 16.46 0.00 4.68
379 380 3.179048 GGACATGCATCCGTTTTAAAGC 58.821 45.455 0.00 0.00 0.00 3.51
389 390 2.764314 GCACACCGGACATGCATCC 61.764 63.158 9.46 0.00 39.23 3.51
390 391 1.308069 AAGCACACCGGACATGCATC 61.308 55.000 24.19 0.00 41.97 3.91
391 392 0.035534 TAAGCACACCGGACATGCAT 60.036 50.000 24.19 17.70 41.97 3.96
392 393 0.953471 GTAAGCACACCGGACATGCA 60.953 55.000 24.19 8.19 41.97 3.96
393 394 1.644786 GGTAAGCACACCGGACATGC 61.645 60.000 9.46 15.02 39.74 4.06
394 395 0.321210 TGGTAAGCACACCGGACATG 60.321 55.000 9.46 3.93 41.88 3.21
395 396 0.618458 ATGGTAAGCACACCGGACAT 59.382 50.000 9.46 0.00 41.88 3.06
396 397 1.268066 TATGGTAAGCACACCGGACA 58.732 50.000 9.46 0.00 41.88 4.02
397 398 2.389962 TTATGGTAAGCACACCGGAC 57.610 50.000 9.46 0.00 41.88 4.79
398 399 2.482316 CGATTATGGTAAGCACACCGGA 60.482 50.000 9.46 0.00 41.88 5.14
399 400 1.864711 CGATTATGGTAAGCACACCGG 59.135 52.381 0.00 0.00 41.88 5.28
400 401 2.816689 TCGATTATGGTAAGCACACCG 58.183 47.619 2.66 0.00 41.88 4.94
401 402 4.377021 TCATCGATTATGGTAAGCACACC 58.623 43.478 0.00 0.00 39.20 4.16
402 403 4.449068 CCTCATCGATTATGGTAAGCACAC 59.551 45.833 0.00 0.00 36.15 3.82
403 404 4.631131 CCTCATCGATTATGGTAAGCACA 58.369 43.478 0.00 0.00 36.15 4.57
404 405 3.433615 GCCTCATCGATTATGGTAAGCAC 59.566 47.826 0.00 0.00 36.15 4.40
405 406 3.070878 TGCCTCATCGATTATGGTAAGCA 59.929 43.478 0.00 0.00 36.15 3.91
406 407 3.664107 TGCCTCATCGATTATGGTAAGC 58.336 45.455 0.00 0.00 36.15 3.09
407 408 6.427853 TGAATTGCCTCATCGATTATGGTAAG 59.572 38.462 13.79 0.00 36.15 2.34
408 409 6.295249 TGAATTGCCTCATCGATTATGGTAA 58.705 36.000 11.78 11.78 36.15 2.85
409 410 5.863965 TGAATTGCCTCATCGATTATGGTA 58.136 37.500 0.00 0.00 36.15 3.25
410 411 4.717877 TGAATTGCCTCATCGATTATGGT 58.282 39.130 0.00 0.00 36.15 3.55
411 412 5.694231 TTGAATTGCCTCATCGATTATGG 57.306 39.130 0.00 0.00 36.15 2.74
412 413 6.974048 TGTTTTGAATTGCCTCATCGATTATG 59.026 34.615 0.00 0.00 36.88 1.90
413 414 7.099266 TGTTTTGAATTGCCTCATCGATTAT 57.901 32.000 0.00 0.00 0.00 1.28
414 415 6.507958 TGTTTTGAATTGCCTCATCGATTA 57.492 33.333 0.00 0.00 0.00 1.75
415 416 5.389859 TGTTTTGAATTGCCTCATCGATT 57.610 34.783 0.00 0.00 0.00 3.34
416 417 5.389859 TTGTTTTGAATTGCCTCATCGAT 57.610 34.783 0.00 0.00 0.00 3.59
417 418 4.844998 TTGTTTTGAATTGCCTCATCGA 57.155 36.364 0.00 0.00 0.00 3.59
418 419 6.254157 CCTTATTGTTTTGAATTGCCTCATCG 59.746 38.462 0.00 0.00 0.00 3.84
419 420 7.063780 CACCTTATTGTTTTGAATTGCCTCATC 59.936 37.037 0.00 0.00 0.00 2.92
420 421 6.875195 CACCTTATTGTTTTGAATTGCCTCAT 59.125 34.615 0.00 0.00 0.00 2.90
421 422 6.183360 ACACCTTATTGTTTTGAATTGCCTCA 60.183 34.615 0.00 0.00 0.00 3.86
422 423 6.146021 CACACCTTATTGTTTTGAATTGCCTC 59.854 38.462 0.00 0.00 0.00 4.70
423 424 5.990996 CACACCTTATTGTTTTGAATTGCCT 59.009 36.000 0.00 0.00 0.00 4.75
424 425 5.334028 GCACACCTTATTGTTTTGAATTGCC 60.334 40.000 0.00 0.00 0.00 4.52
425 426 5.236047 TGCACACCTTATTGTTTTGAATTGC 59.764 36.000 0.00 0.00 0.00 3.56
426 427 6.841443 TGCACACCTTATTGTTTTGAATTG 57.159 33.333 0.00 0.00 0.00 2.32
430 431 5.781210 TGATGCACACCTTATTGTTTTGA 57.219 34.783 0.00 0.00 0.00 2.69
445 446 3.180387 GCAAGAAAACGAGTTTGATGCAC 59.820 43.478 19.39 0.00 36.78 4.57
481 482 3.007635 GTTTACCTGGACAGTACCATGC 58.992 50.000 0.00 0.00 39.34 4.06
495 496 1.096416 CTCTCGCTCTCGGTTTACCT 58.904 55.000 0.00 0.00 36.13 3.08
496 497 1.093159 TCTCTCGCTCTCGGTTTACC 58.907 55.000 0.00 0.00 36.13 2.85
497 498 4.752661 ATATCTCTCGCTCTCGGTTTAC 57.247 45.455 0.00 0.00 36.13 2.01
498 499 5.520632 CAAATATCTCTCGCTCTCGGTTTA 58.479 41.667 0.00 0.00 36.13 2.01
499 500 4.363999 CAAATATCTCTCGCTCTCGGTTT 58.636 43.478 0.00 0.00 36.13 3.27
500 501 3.797184 GCAAATATCTCTCGCTCTCGGTT 60.797 47.826 0.00 0.00 36.13 4.44
501 502 2.287909 GCAAATATCTCTCGCTCTCGGT 60.288 50.000 0.00 0.00 36.13 4.69
502 503 2.323959 GCAAATATCTCTCGCTCTCGG 58.676 52.381 0.00 0.00 36.13 4.63
503 504 1.975362 CGCAAATATCTCTCGCTCTCG 59.025 52.381 0.00 0.00 0.00 4.04
504 505 2.323959 CCGCAAATATCTCTCGCTCTC 58.676 52.381 0.00 0.00 0.00 3.20
505 506 1.000283 CCCGCAAATATCTCTCGCTCT 60.000 52.381 0.00 0.00 0.00 4.09
506 507 1.423395 CCCGCAAATATCTCTCGCTC 58.577 55.000 0.00 0.00 0.00 5.03
507 508 0.034059 CCCCGCAAATATCTCTCGCT 59.966 55.000 0.00 0.00 0.00 4.93
508 509 0.249911 ACCCCGCAAATATCTCTCGC 60.250 55.000 0.00 0.00 0.00 5.03
509 510 3.380479 TTACCCCGCAAATATCTCTCG 57.620 47.619 0.00 0.00 0.00 4.04
510 511 4.389077 CGATTTACCCCGCAAATATCTCTC 59.611 45.833 0.00 0.00 0.00 3.20
538 539 2.268920 GATTGGGCAGCCGACTCA 59.731 61.111 5.00 0.00 0.00 3.41
574 575 1.645402 AACCACCAGCCTCCAGTTGT 61.645 55.000 0.00 0.00 0.00 3.32
577 578 1.136329 ATCAACCACCAGCCTCCAGT 61.136 55.000 0.00 0.00 0.00 4.00
606 607 2.493273 AATGAAATCGCCCACCCGGT 62.493 55.000 0.00 0.00 0.00 5.28
610 611 0.970427 ACCCAATGAAATCGCCCACC 60.970 55.000 0.00 0.00 0.00 4.61
622 623 4.358841 TCCCACCCGCACCCAATG 62.359 66.667 0.00 0.00 0.00 2.82
644 645 2.888863 GCCAGGACGAGACAGAGG 59.111 66.667 0.00 0.00 0.00 3.69
675 676 1.519898 CGTACGCAAGCCCCGTAAT 60.520 57.895 0.52 0.00 42.07 1.89
775 777 4.809426 AGATTTGCTTCGTATTTACTCGGG 59.191 41.667 0.00 0.00 0.00 5.14
923 945 4.436998 GTAGCTGCAGGTCGCCGT 62.437 66.667 23.94 0.00 41.33 5.68
1135 1761 2.175202 GTGATCTCACCTGACAGGACT 58.825 52.381 28.56 3.29 37.67 3.85
1164 1799 1.270839 TGGCTGTAGAGAAGGTTGTGC 60.271 52.381 0.00 0.00 0.00 4.57
1209 1852 5.147865 CCAAAATAACAATAACACGCACGA 58.852 37.500 0.00 0.00 0.00 4.35
1326 3343 4.093556 CCTCTTCCACGAAAAAGATGCTAC 59.906 45.833 0.00 0.00 31.45 3.58
1599 3907 8.991243 AATCATTTCAACATGAATCAAACGAT 57.009 26.923 0.00 0.00 36.11 3.73
1805 4143 7.495055 AGCTCTTCAACTGAATGAAAAACAAT 58.505 30.769 0.00 0.00 38.75 2.71
1956 4296 2.749621 GCCACCTCACAAATGTAGGAAG 59.250 50.000 12.83 7.08 34.34 3.46
2314 4676 7.607991 CCTGAACTAGACAAACACCATAAGAAT 59.392 37.037 0.00 0.00 0.00 2.40
2485 4848 5.594317 AGAGGAAACACAACATTAAGCAGTT 59.406 36.000 0.00 0.00 0.00 3.16
2823 5272 2.563179 AGCCAACGTCACAAGAGAGTAT 59.437 45.455 0.00 0.00 0.00 2.12
2851 5300 5.518848 TCGTAAATGGAGCCGAATAACTA 57.481 39.130 0.00 0.00 0.00 2.24
3050 5499 0.242825 GATGACCGTTGACTCCGACA 59.757 55.000 0.00 0.00 0.00 4.35
3256 5705 7.234782 TCCTCTAACAGAGACCTGAAAAATACA 59.765 37.037 4.74 0.00 45.07 2.29
3259 5708 6.688073 TCCTCTAACAGAGACCTGAAAAAT 57.312 37.500 4.74 0.00 45.07 1.82
3307 5756 8.408043 AATATGAAGACATGTTCCAGAAAACA 57.592 30.769 0.00 0.00 42.92 2.83
3387 5836 7.970102 ACTAAAATATTCTTATCCACGGGCTA 58.030 34.615 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.