Multiple sequence alignment - TraesCS7A01G072000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G072000 chr7A 100.000 2492 0 0 1 2492 37724319 37721828 0.000000e+00 4602.0
1 TraesCS7A01G072000 chr7A 94.875 917 34 7 1576 2492 25750214 25751117 0.000000e+00 1421.0
2 TraesCS7A01G072000 chr7A 91.271 1031 68 4 519 1528 25749172 25750201 0.000000e+00 1386.0
3 TraesCS7A01G072000 chr7A 89.610 847 62 7 1 830 25691455 25692292 0.000000e+00 1053.0
4 TraesCS7A01G072000 chr7A 90.112 445 44 0 2048 2492 26033385 26032941 1.660000e-161 579.0
5 TraesCS7A01G072000 chr7A 88.675 468 52 1 2026 2492 26045825 26045358 1.000000e-158 569.0
6 TraesCS7A01G072000 chr7A 86.364 528 38 16 1 524 25748641 25749138 1.690000e-151 545.0
7 TraesCS7A01G072000 chr4A 89.201 889 69 13 1615 2492 708614751 708613879 0.000000e+00 1085.0
8 TraesCS7A01G072000 chr4A 91.321 530 42 2 1 527 708616213 708615685 0.000000e+00 721.0
9 TraesCS7A01G072000 chr4A 88.889 576 42 12 519 1073 708615655 708615081 0.000000e+00 689.0
10 TraesCS7A01G072000 chr6B 92.730 674 19 4 1849 2492 125729834 125729161 0.000000e+00 946.0
11 TraesCS7A01G072000 chr7D 95.897 585 16 3 1908 2492 24945580 24946156 0.000000e+00 941.0
12 TraesCS7A01G072000 chr7D 90.432 533 44 4 1 527 24944023 24944554 0.000000e+00 695.0
13 TraesCS7A01G072000 chr7D 88.715 576 43 4 519 1073 24944584 24945158 0.000000e+00 684.0
14 TraesCS7A01G072000 chr7D 88.262 443 52 0 2048 2490 25273563 25273121 4.720000e-147 531.0
15 TraesCS7A01G072000 chr6D 93.011 558 11 7 1961 2492 55895728 55895173 0.000000e+00 789.0
16 TraesCS7A01G072000 chr6D 87.143 70 2 2 1806 1874 55897348 55897285 3.440000e-09 73.1
17 TraesCS7A01G072000 chrUn 87.416 445 56 0 2048 2492 50425357 50424913 1.710000e-141 512.0
18 TraesCS7A01G072000 chr6A 93.522 247 8 2 1782 2026 69927984 69927744 6.550000e-96 361.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G072000 chr7A 37721828 37724319 2491 True 4602.000000 4602 100.000000 1 2492 1 chr7A.!!$R3 2491
1 TraesCS7A01G072000 chr7A 25748641 25751117 2476 False 1117.333333 1421 90.836667 1 2492 3 chr7A.!!$F2 2491
2 TraesCS7A01G072000 chr7A 25691455 25692292 837 False 1053.000000 1053 89.610000 1 830 1 chr7A.!!$F1 829
3 TraesCS7A01G072000 chr4A 708613879 708616213 2334 True 831.666667 1085 89.803667 1 2492 3 chr4A.!!$R1 2491
4 TraesCS7A01G072000 chr6B 125729161 125729834 673 True 946.000000 946 92.730000 1849 2492 1 chr6B.!!$R1 643
5 TraesCS7A01G072000 chr7D 24944023 24946156 2133 False 773.333333 941 91.681333 1 2492 3 chr7D.!!$F1 2491
6 TraesCS7A01G072000 chr6D 55895173 55897348 2175 True 431.050000 789 90.077000 1806 2492 2 chr6D.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 44 0.03831 GTGGTGAGGGAAGGGAAAGG 59.962 60.0 0.0 0.0 0.0 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1560 1667 0.035458 AAAGCAGCAGGTTACGCTCT 59.965 50.0 0.0 0.0 37.72 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 30 1.799258 GAAACTGCTGGGCTGTGGTG 61.799 60.000 3.06 0.00 40.40 4.17
42 44 0.038310 GTGGTGAGGGAAGGGAAAGG 59.962 60.000 0.00 0.00 0.00 3.11
63 65 0.539051 AACAGAGAGGAAGATGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
144 149 8.837389 AGTGTATTCCTCTTAGTTTTGTGAAAC 58.163 33.333 0.00 0.00 44.35 2.78
246 254 6.149973 TCAACCTGATGAATTGCTCTTGTAAG 59.850 38.462 0.00 0.00 0.00 2.34
256 264 2.995939 TGCTCTTGTAAGCTCAATGTCG 59.004 45.455 0.00 0.00 42.94 4.35
328 336 9.990868 AAATATCTTTGTTCCCTATTTGTACCT 57.009 29.630 0.00 0.00 0.00 3.08
386 394 3.070159 TGTCAACAGCTAGAGTTCTGCTT 59.930 43.478 0.00 0.00 34.51 3.91
389 397 3.878160 ACAGCTAGAGTTCTGCTTACC 57.122 47.619 0.00 0.00 34.51 2.85
392 400 4.180057 CAGCTAGAGTTCTGCTTACCAAG 58.820 47.826 0.00 0.00 34.51 3.61
459 467 2.058593 GGGATGCCCTTAACTTGGAG 57.941 55.000 0.00 0.00 41.34 3.86
464 472 0.328258 GCCCTTAACTTGGAGCCAGA 59.672 55.000 0.00 0.00 0.00 3.86
489 497 6.849697 ACCACATCCAAATCCCTAGTAGAATA 59.150 38.462 0.00 0.00 0.00 1.75
536 583 5.163322 TGGGACTAAAAAGTAGGACGTTTCA 60.163 40.000 0.00 0.00 28.81 2.69
542 589 8.557029 ACTAAAAAGTAGGACGTTTCATTCAAG 58.443 33.333 0.00 0.00 28.81 3.02
552 599 7.228706 AGGACGTTTCATTCAAGTTAAGTCAAT 59.771 33.333 0.00 0.00 0.00 2.57
605 652 6.402222 AGCTTCCTGAGAACTAGTGTAATTG 58.598 40.000 0.00 0.00 0.00 2.32
612 659 8.621286 CCTGAGAACTAGTGTAATTGTTTGTTT 58.379 33.333 0.00 0.00 0.00 2.83
660 707 1.548719 TCACATCCTGGGTACAAGTCG 59.451 52.381 0.00 0.00 0.00 4.18
716 763 4.157840 TGAACTTTATCAGCAGAGCGAGTA 59.842 41.667 0.00 0.00 0.00 2.59
727 774 3.801638 GCAGAGCGAGTAATGTCCATCAT 60.802 47.826 0.00 0.00 38.57 2.45
738 792 1.126488 GTCCATCATCTCTGGCTCCA 58.874 55.000 0.00 0.00 33.56 3.86
831 899 3.986006 GACCGTGACGAGCCACCA 61.986 66.667 6.54 0.00 33.67 4.17
833 901 2.509336 CCGTGACGAGCCACCATC 60.509 66.667 6.54 0.00 33.67 3.51
845 913 4.101448 ACCATCGCTCCAGGCCAC 62.101 66.667 5.01 0.00 37.74 5.01
865 933 2.617274 GCGGTGCCTTTCTGGTGAC 61.617 63.158 0.00 0.00 38.35 3.67
867 935 1.966451 GGTGCCTTTCTGGTGACCG 60.966 63.158 0.00 0.00 38.35 4.79
891 959 3.391382 CGCTCCCGGAGTTCCCTT 61.391 66.667 16.09 0.00 31.39 3.95
899 967 1.618888 CCGGAGTTCCCTTCCTGTCTA 60.619 57.143 0.00 0.00 32.34 2.59
935 1003 2.197465 CCTAACCTTAGCCTCCACCTT 58.803 52.381 0.00 0.00 0.00 3.50
1004 1072 2.121948 CCTCAGATCCTCCACCATGAA 58.878 52.381 0.00 0.00 0.00 2.57
1023 1091 2.276732 ACACCTTGTTCATCCTGTGG 57.723 50.000 0.00 0.00 0.00 4.17
1199 1267 4.479993 GCAGGAGCGCATGGAGGT 62.480 66.667 11.47 0.00 0.00 3.85
1202 1270 4.899239 GGAGCGCATGGAGGTCCG 62.899 72.222 11.47 0.00 44.82 4.79
1207 1275 4.530857 GCATGGAGGTCCGGGTCG 62.531 72.222 0.00 0.00 39.43 4.79
1212 1280 3.368571 GAGGTCCGGGTCGTCGTT 61.369 66.667 0.00 0.00 0.00 3.85
1255 1323 4.316823 ACCGACCTCTCCAGCCCA 62.317 66.667 0.00 0.00 0.00 5.36
1326 1394 1.363744 CCGAAGCAGAGGAACATGAC 58.636 55.000 0.00 0.00 0.00 3.06
1327 1395 1.338105 CCGAAGCAGAGGAACATGACA 60.338 52.381 0.00 0.00 0.00 3.58
1335 1403 0.320771 AGGAACATGACACTGCGGTC 60.321 55.000 0.00 0.00 38.29 4.79
1337 1405 1.626654 GAACATGACACTGCGGTCCG 61.627 60.000 6.99 6.99 36.97 4.79
1338 1406 2.094757 AACATGACACTGCGGTCCGA 62.095 55.000 17.49 0.00 36.97 4.55
1348 1416 4.444838 CGGTCCGATTGCCCGTCA 62.445 66.667 4.91 0.00 37.00 4.35
1349 1417 2.189521 GGTCCGATTGCCCGTCAT 59.810 61.111 0.00 0.00 0.00 3.06
1431 1538 2.165845 ACCTGACATAGTACAACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
1462 1569 2.577059 GGCGGAAGATGTCGTGGA 59.423 61.111 0.00 0.00 0.00 4.02
1478 1585 3.134623 TCGTGGATGCCTGATGTATCTTT 59.865 43.478 0.00 0.00 36.43 2.52
1479 1586 3.879295 CGTGGATGCCTGATGTATCTTTT 59.121 43.478 0.00 0.00 36.43 2.27
1481 1588 4.037208 GTGGATGCCTGATGTATCTTTTGG 59.963 45.833 0.00 0.00 36.43 3.28
1528 1635 3.358118 AGCTAGCTCTTCCTTCTTACGT 58.642 45.455 12.68 0.00 0.00 3.57
1531 1638 3.219052 AGCTCTTCCTTCTTACGTTCG 57.781 47.619 0.00 0.00 0.00 3.95
1532 1639 2.557490 AGCTCTTCCTTCTTACGTTCGT 59.443 45.455 0.00 2.91 0.00 3.85
1533 1640 3.755378 AGCTCTTCCTTCTTACGTTCGTA 59.245 43.478 0.00 0.78 0.00 3.43
1534 1641 4.398673 AGCTCTTCCTTCTTACGTTCGTAT 59.601 41.667 5.91 0.00 0.00 3.06
1535 1642 5.587844 AGCTCTTCCTTCTTACGTTCGTATA 59.412 40.000 5.91 0.00 0.00 1.47
1536 1643 6.262720 AGCTCTTCCTTCTTACGTTCGTATAT 59.737 38.462 5.91 0.00 0.00 0.86
1537 1644 6.916932 GCTCTTCCTTCTTACGTTCGTATATT 59.083 38.462 5.91 0.00 0.00 1.28
1564 1671 5.695851 TTTCTTTCTCATGTTTGGAGAGC 57.304 39.130 0.00 0.00 42.00 4.09
1565 1672 3.329386 TCTTTCTCATGTTTGGAGAGCG 58.671 45.455 0.00 0.00 42.00 5.03
1566 1673 2.839486 TTCTCATGTTTGGAGAGCGT 57.161 45.000 0.00 0.00 42.00 5.07
1567 1674 3.953712 TTCTCATGTTTGGAGAGCGTA 57.046 42.857 0.00 0.00 42.00 4.42
1568 1675 3.953712 TCTCATGTTTGGAGAGCGTAA 57.046 42.857 0.00 0.00 36.52 3.18
1569 1676 3.585862 TCTCATGTTTGGAGAGCGTAAC 58.414 45.455 0.00 0.00 36.52 2.50
1570 1677 2.673368 CTCATGTTTGGAGAGCGTAACC 59.327 50.000 0.00 0.00 34.24 2.85
1571 1678 2.301870 TCATGTTTGGAGAGCGTAACCT 59.698 45.455 0.00 0.00 0.00 3.50
1572 1679 2.163818 TGTTTGGAGAGCGTAACCTG 57.836 50.000 0.00 0.00 0.00 4.00
1573 1680 0.796927 GTTTGGAGAGCGTAACCTGC 59.203 55.000 0.00 0.00 0.00 4.85
1612 1719 5.652014 TGCCCTTGTTAATCTACTCATTTGG 59.348 40.000 0.00 0.00 0.00 3.28
2076 3830 2.956333 GCACCCCTCAACAAATATACCC 59.044 50.000 0.00 0.00 0.00 3.69
2162 3916 1.065126 GTTCTCCAAGCCTAGGCACAT 60.065 52.381 34.70 18.01 44.88 3.21
2409 4163 1.102154 CCTTGTGTGCAAACCAGACA 58.898 50.000 9.68 0.00 44.95 3.41
2427 4181 3.944250 AAGGAGTGGGGCAATGGCG 62.944 63.158 0.00 0.00 42.47 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.203394 CACCACAGCCCAGCAGTT 60.203 61.111 0.00 0.00 0.00 3.16
28 30 0.112412 TGTTGCCTTTCCCTTCCCTC 59.888 55.000 0.00 0.00 0.00 4.30
42 44 1.377536 GCCATCTTCCTCTCTGTTGC 58.622 55.000 0.00 0.00 0.00 4.17
63 65 5.411781 ACTCTAAATGGTCGTCAGAATCAC 58.588 41.667 0.00 0.00 0.00 3.06
95 97 4.614555 TCATCATCAACAACAATACCGC 57.385 40.909 0.00 0.00 0.00 5.68
151 159 8.618240 TTCTGATCACTAGGGACCTTTTTATA 57.382 34.615 0.00 0.00 0.00 0.98
161 169 1.751351 CGTGCTTCTGATCACTAGGGA 59.249 52.381 0.00 0.00 0.00 4.20
166 174 5.774498 TCATATACGTGCTTCTGATCACT 57.226 39.130 0.00 1.08 0.00 3.41
221 229 4.401022 ACAAGAGCAATTCATCAGGTTGA 58.599 39.130 0.00 0.00 0.00 3.18
246 254 2.605366 GGAAGCTTCTACGACATTGAGC 59.395 50.000 25.05 0.75 0.00 4.26
256 264 2.693267 AATCCGTGGGAAGCTTCTAC 57.307 50.000 25.05 21.19 34.34 2.59
386 394 2.091541 GCAAATGCAGGTAGCTTGGTA 58.908 47.619 0.00 0.00 45.94 3.25
440 448 2.024306 GCTCCAAGTTAAGGGCATCCC 61.024 57.143 0.00 0.00 45.90 3.85
459 467 1.106285 GGATTTGGATGTGGTCTGGC 58.894 55.000 0.00 0.00 0.00 4.85
464 472 4.631234 TCTACTAGGGATTTGGATGTGGT 58.369 43.478 0.00 0.00 0.00 4.16
489 497 8.966868 CCCACAACATATGGTTTACTTCTTATT 58.033 33.333 7.80 0.00 37.72 1.40
512 520 4.961438 AACGTCCTACTTTTTAGTCCCA 57.039 40.909 0.00 0.00 0.00 4.37
605 652 8.280497 CACATCTGTACTTACCTACAAACAAAC 58.720 37.037 0.00 0.00 0.00 2.93
612 659 7.630728 GCAGAATCACATCTGTACTTACCTACA 60.631 40.741 6.22 0.00 46.85 2.74
616 663 5.665459 AGCAGAATCACATCTGTACTTACC 58.335 41.667 6.22 0.00 46.85 2.85
660 707 0.035458 CAGTTGGGACAGTCCTGACC 59.965 60.000 19.57 7.19 42.39 4.02
701 748 2.223923 GGACATTACTCGCTCTGCTGAT 60.224 50.000 0.00 0.00 0.00 2.90
704 751 1.186200 TGGACATTACTCGCTCTGCT 58.814 50.000 0.00 0.00 0.00 4.24
716 763 2.106166 GGAGCCAGAGATGATGGACATT 59.894 50.000 0.00 0.00 40.51 2.71
727 774 3.388552 TCAGACTATTGGAGCCAGAGA 57.611 47.619 7.32 0.00 0.00 3.10
738 792 3.199508 ACTTGAGCAGGCATCAGACTATT 59.800 43.478 0.00 0.00 0.00 1.73
806 874 2.355363 CGTCACGGTCGGCTTTCA 60.355 61.111 0.00 0.00 0.00 2.69
867 935 3.827898 CTCCGGGAGCGAGTGTCC 61.828 72.222 11.83 0.00 0.00 4.02
899 967 2.237392 GTTAGGCTTGTGATGGAGTCCT 59.763 50.000 11.33 0.00 0.00 3.85
1004 1072 1.494721 ACCACAGGATGAACAAGGTGT 59.505 47.619 0.00 0.00 39.69 4.16
1152 1220 3.998672 TGGAGTGAACCGACGGCC 61.999 66.667 15.39 6.40 0.00 6.13
1153 1221 2.737376 GTGGAGTGAACCGACGGC 60.737 66.667 15.39 0.00 0.00 5.68
1163 1231 2.663196 GGAGGGGTTCGTGGAGTG 59.337 66.667 0.00 0.00 0.00 3.51
1164 1232 2.995574 CGGAGGGGTTCGTGGAGT 60.996 66.667 0.00 0.00 0.00 3.85
1199 1267 2.027897 CAACAACGACGACCCGGA 59.972 61.111 0.73 0.00 0.00 5.14
1202 1270 0.529119 AGTGTCAACAACGACGACCC 60.529 55.000 0.00 0.00 38.84 4.46
1207 1275 1.597663 CCCAAGAGTGTCAACAACGAC 59.402 52.381 0.00 0.00 36.40 4.34
1210 1278 1.947456 GACCCCAAGAGTGTCAACAAC 59.053 52.381 0.00 0.00 0.00 3.32
1212 1280 1.416401 GAGACCCCAAGAGTGTCAACA 59.584 52.381 0.00 0.00 0.00 3.33
1326 1394 3.499737 GGCAATCGGACCGCAGTG 61.500 66.667 9.66 9.06 0.00 3.66
1327 1395 4.778143 GGGCAATCGGACCGCAGT 62.778 66.667 9.66 0.00 32.42 4.40
1335 1403 3.585990 GGCATGACGGGCAATCGG 61.586 66.667 0.00 0.00 0.00 4.18
1337 1405 2.800736 GTGGCATGACGGGCAATC 59.199 61.111 0.00 0.00 45.54 2.67
1338 1406 3.133464 CGTGGCATGACGGGCAAT 61.133 61.111 0.00 0.00 45.54 3.56
1448 1555 0.179000 AGGCATCCACGACATCTTCC 59.821 55.000 0.00 0.00 0.00 3.46
1462 1569 2.961062 GGCCAAAAGATACATCAGGCAT 59.039 45.455 0.00 0.00 42.26 4.40
1478 1585 2.337879 GACACCTCACACCTGGCCAA 62.338 60.000 7.01 0.00 0.00 4.52
1479 1586 2.772191 ACACCTCACACCTGGCCA 60.772 61.111 4.71 4.71 0.00 5.36
1481 1588 1.192146 TAGGACACCTCACACCTGGC 61.192 60.000 0.00 0.00 34.61 4.85
1540 1647 6.507023 GCTCTCCAAACATGAGAAAGAAAAA 58.493 36.000 0.00 0.00 38.34 1.94
1541 1648 5.277974 CGCTCTCCAAACATGAGAAAGAAAA 60.278 40.000 0.00 0.00 38.34 2.29
1542 1649 4.214119 CGCTCTCCAAACATGAGAAAGAAA 59.786 41.667 0.00 0.00 38.34 2.52
1543 1650 3.748048 CGCTCTCCAAACATGAGAAAGAA 59.252 43.478 0.00 0.00 38.34 2.52
1544 1651 3.244215 ACGCTCTCCAAACATGAGAAAGA 60.244 43.478 0.00 0.00 38.34 2.52
1545 1652 3.070018 ACGCTCTCCAAACATGAGAAAG 58.930 45.455 0.00 0.00 38.34 2.62
1546 1653 3.126001 ACGCTCTCCAAACATGAGAAA 57.874 42.857 0.00 0.00 38.34 2.52
1547 1654 2.839486 ACGCTCTCCAAACATGAGAA 57.161 45.000 0.00 0.00 38.34 2.87
1548 1655 3.585862 GTTACGCTCTCCAAACATGAGA 58.414 45.455 0.00 0.00 37.33 3.27
1549 1656 2.673368 GGTTACGCTCTCCAAACATGAG 59.327 50.000 0.00 0.00 0.00 2.90
1550 1657 2.301870 AGGTTACGCTCTCCAAACATGA 59.698 45.455 0.00 0.00 0.00 3.07
1551 1658 2.416547 CAGGTTACGCTCTCCAAACATG 59.583 50.000 0.00 0.00 0.00 3.21
1552 1659 2.699954 CAGGTTACGCTCTCCAAACAT 58.300 47.619 0.00 0.00 0.00 2.71
1553 1660 1.876416 GCAGGTTACGCTCTCCAAACA 60.876 52.381 0.00 0.00 0.00 2.83
1554 1661 0.796927 GCAGGTTACGCTCTCCAAAC 59.203 55.000 0.00 0.00 0.00 2.93
1555 1662 0.685097 AGCAGGTTACGCTCTCCAAA 59.315 50.000 0.00 0.00 33.35 3.28
1556 1663 0.037326 CAGCAGGTTACGCTCTCCAA 60.037 55.000 0.00 0.00 37.72 3.53
1557 1664 1.591703 CAGCAGGTTACGCTCTCCA 59.408 57.895 0.00 0.00 37.72 3.86
1558 1665 1.811679 GCAGCAGGTTACGCTCTCC 60.812 63.158 0.00 0.00 37.72 3.71
1559 1666 0.390472 AAGCAGCAGGTTACGCTCTC 60.390 55.000 0.00 0.00 37.72 3.20
1560 1667 0.035458 AAAGCAGCAGGTTACGCTCT 59.965 50.000 0.00 0.00 37.72 4.09
1561 1668 1.722011 TAAAGCAGCAGGTTACGCTC 58.278 50.000 0.00 0.00 37.72 5.03
1562 1669 2.403252 ATAAAGCAGCAGGTTACGCT 57.597 45.000 0.00 0.00 41.47 5.07
1563 1670 2.477863 CCAATAAAGCAGCAGGTTACGC 60.478 50.000 0.00 0.00 34.49 4.42
1564 1671 2.747446 ACCAATAAAGCAGCAGGTTACG 59.253 45.455 0.00 0.00 34.49 3.18
1565 1672 5.890424 TTACCAATAAAGCAGCAGGTTAC 57.110 39.130 0.00 0.00 34.49 2.50
1566 1673 5.163561 GCATTACCAATAAAGCAGCAGGTTA 60.164 40.000 0.00 0.00 35.52 2.85
1567 1674 4.381932 GCATTACCAATAAAGCAGCAGGTT 60.382 41.667 0.00 0.00 35.52 3.50
1568 1675 3.131046 GCATTACCAATAAAGCAGCAGGT 59.869 43.478 0.00 0.00 35.52 4.00
1569 1676 3.491447 GGCATTACCAATAAAGCAGCAGG 60.491 47.826 0.00 0.00 36.85 4.85
1570 1677 3.491447 GGGCATTACCAATAAAGCAGCAG 60.491 47.826 0.00 0.00 42.05 4.24
1571 1678 2.430332 GGGCATTACCAATAAAGCAGCA 59.570 45.455 0.00 0.00 42.05 4.41
1572 1679 2.695147 AGGGCATTACCAATAAAGCAGC 59.305 45.455 0.00 0.00 42.05 5.25
1573 1680 4.160252 ACAAGGGCATTACCAATAAAGCAG 59.840 41.667 0.00 0.00 42.05 4.24
1574 1681 4.093011 ACAAGGGCATTACCAATAAAGCA 58.907 39.130 0.00 0.00 42.05 3.91
1724 1979 6.653740 ACCAAGTACTATTCCAGCTTGTAAAC 59.346 38.462 0.00 0.00 35.94 2.01
1808 2066 8.224389 TCAAAGTTTCAGAAAGATTCATGACA 57.776 30.769 0.00 0.00 0.00 3.58
2076 3830 1.457346 CTTCTTGCCCCACTGCTAAG 58.543 55.000 0.00 0.00 0.00 2.18
2162 3916 5.645624 CATTCATGGCCGTGTTAATTTACA 58.354 37.500 24.24 0.00 0.00 2.41
2244 3998 4.338682 GGCTATGTGGTCTATAGATACCGG 59.661 50.000 5.57 0.00 38.70 5.28
2348 4102 3.370840 TCTTGCTTATCAACATGCCCT 57.629 42.857 0.00 0.00 0.00 5.19
2409 4163 2.037847 GCCATTGCCCCACTCCTT 59.962 61.111 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.