Multiple sequence alignment - TraesCS7A01G071900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G071900 chr7A 100.000 5178 0 0 1 5178 37718102 37723279 0.000000e+00 9563.0
1 TraesCS7A01G071900 chr7A 94.135 2779 125 22 1879 4643 25752968 25750214 0.000000e+00 4194.0
2 TraesCS7A01G071900 chr7A 93.083 1359 89 4 1 1358 584487407 584488761 0.000000e+00 1984.0
3 TraesCS7A01G071900 chr7A 93.010 1359 90 4 1 1358 584437695 584439049 0.000000e+00 1978.0
4 TraesCS7A01G071900 chr7A 93.078 1358 85 7 1 1353 692419931 692421284 0.000000e+00 1978.0
5 TraesCS7A01G071900 chr7A 83.168 1913 272 31 2282 4171 26031500 26033385 0.000000e+00 1703.0
6 TraesCS7A01G071900 chr7A 82.971 1932 270 33 2290 4193 26043925 26045825 0.000000e+00 1690.0
7 TraesCS7A01G071900 chr7A 92.828 488 35 0 4691 5178 25750201 25749714 0.000000e+00 708.0
8 TraesCS7A01G071900 chr7A 86.777 242 26 4 1600 1840 25753536 25753300 1.110000e-66 265.0
9 TraesCS7A01G071900 chr7A 80.345 290 27 8 1345 1605 25753850 25753562 5.290000e-45 193.0
10 TraesCS7A01G071900 chr4A 91.225 2792 177 38 1853 4604 708611988 708614751 0.000000e+00 3736.0
11 TraesCS7A01G071900 chr4A 79.386 228 15 12 1345 1542 708611385 708611610 1.170000e-26 132.0
12 TraesCS7A01G071900 chr7D 91.241 2763 169 35 1600 4311 24948320 24945580 0.000000e+00 3694.0
13 TraesCS7A01G071900 chr7D 82.381 1907 294 24 2282 4171 25190685 25192566 0.000000e+00 1622.0
14 TraesCS7A01G071900 chr7D 81.719 1920 277 39 2290 4171 25271680 25273563 0.000000e+00 1533.0
15 TraesCS7A01G071900 chr1A 94.044 1360 74 6 1 1358 121767303 121765949 0.000000e+00 2056.0
16 TraesCS7A01G071900 chr2A 94.035 1358 76 4 1 1358 334496268 334494916 0.000000e+00 2054.0
17 TraesCS7A01G071900 chr2A 92.994 1356 90 5 1 1353 406852208 406853561 0.000000e+00 1973.0
18 TraesCS7A01G071900 chr5A 93.441 1357 84 5 2 1357 97981261 97982613 0.000000e+00 2008.0
19 TraesCS7A01G071900 chr6A 93.157 1359 88 4 1 1358 445077170 445078524 0.000000e+00 1989.0
20 TraesCS7A01G071900 chr6A 93.522 247 8 2 4193 4437 69927744 69927984 1.370000e-95 361.0
21 TraesCS7A01G071900 chr5D 93.220 1357 85 5 1 1357 86626829 86628178 0.000000e+00 1989.0
22 TraesCS7A01G071900 chr6D 88.956 1494 114 27 2101 3550 55893640 55895126 0.000000e+00 1797.0
23 TraesCS7A01G071900 chr6D 92.953 596 13 8 3689 4258 55895136 55895728 0.000000e+00 841.0
24 TraesCS7A01G071900 chr6D 86.503 163 12 8 1859 2016 55873939 55874096 2.480000e-38 171.0
25 TraesCS7A01G071900 chr6D 86.503 163 12 8 1859 2016 55885117 55885274 2.480000e-38 171.0
26 TraesCS7A01G071900 chr6D 98.148 54 1 0 2018 2071 55885766 55885819 1.530000e-15 95.3
27 TraesCS7A01G071900 chr6D 96.296 54 2 0 2018 2071 55874587 55874640 7.140000e-14 89.8
28 TraesCS7A01G071900 chr6D 87.143 70 2 2 4345 4413 55897285 55897348 7.190000e-09 73.1
29 TraesCS7A01G071900 chr6B 89.230 1337 103 22 2248 3550 125727603 125728932 0.000000e+00 1633.0
30 TraesCS7A01G071900 chr6B 92.308 871 30 6 3537 4370 125728964 125729834 0.000000e+00 1203.0
31 TraesCS7A01G071900 chr6B 89.147 129 8 5 1889 2016 125726815 125726938 6.940000e-34 156.0
32 TraesCS7A01G071900 chrUn 84.239 736 91 12 3016 3735 468581920 468582646 0.000000e+00 693.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G071900 chr7A 37718102 37723279 5177 False 9563.000000 9563 100.000000 1 5178 1 chr7A.!!$F3 5177
1 TraesCS7A01G071900 chr7A 584487407 584488761 1354 False 1984.000000 1984 93.083000 1 1358 1 chr7A.!!$F5 1357
2 TraesCS7A01G071900 chr7A 584437695 584439049 1354 False 1978.000000 1978 93.010000 1 1358 1 chr7A.!!$F4 1357
3 TraesCS7A01G071900 chr7A 692419931 692421284 1353 False 1978.000000 1978 93.078000 1 1353 1 chr7A.!!$F6 1352
4 TraesCS7A01G071900 chr7A 26031500 26033385 1885 False 1703.000000 1703 83.168000 2282 4171 1 chr7A.!!$F1 1889
5 TraesCS7A01G071900 chr7A 26043925 26045825 1900 False 1690.000000 1690 82.971000 2290 4193 1 chr7A.!!$F2 1903
6 TraesCS7A01G071900 chr7A 25749714 25753850 4136 True 1340.000000 4194 88.521250 1345 5178 4 chr7A.!!$R1 3833
7 TraesCS7A01G071900 chr4A 708611385 708614751 3366 False 1934.000000 3736 85.305500 1345 4604 2 chr4A.!!$F1 3259
8 TraesCS7A01G071900 chr7D 24945580 24948320 2740 True 3694.000000 3694 91.241000 1600 4311 1 chr7D.!!$R1 2711
9 TraesCS7A01G071900 chr7D 25190685 25192566 1881 False 1622.000000 1622 82.381000 2282 4171 1 chr7D.!!$F1 1889
10 TraesCS7A01G071900 chr7D 25271680 25273563 1883 False 1533.000000 1533 81.719000 2290 4171 1 chr7D.!!$F2 1881
11 TraesCS7A01G071900 chr1A 121765949 121767303 1354 True 2056.000000 2056 94.044000 1 1358 1 chr1A.!!$R1 1357
12 TraesCS7A01G071900 chr2A 334494916 334496268 1352 True 2054.000000 2054 94.035000 1 1358 1 chr2A.!!$R1 1357
13 TraesCS7A01G071900 chr2A 406852208 406853561 1353 False 1973.000000 1973 92.994000 1 1353 1 chr2A.!!$F1 1352
14 TraesCS7A01G071900 chr5A 97981261 97982613 1352 False 2008.000000 2008 93.441000 2 1357 1 chr5A.!!$F1 1355
15 TraesCS7A01G071900 chr6A 445077170 445078524 1354 False 1989.000000 1989 93.157000 1 1358 1 chr6A.!!$F2 1357
16 TraesCS7A01G071900 chr5D 86626829 86628178 1349 False 1989.000000 1989 93.220000 1 1357 1 chr5D.!!$F1 1356
17 TraesCS7A01G071900 chr6D 55893640 55897348 3708 False 903.700000 1797 89.684000 2101 4413 3 chr6D.!!$F3 2312
18 TraesCS7A01G071900 chr6B 125726815 125729834 3019 False 997.333333 1633 90.228333 1889 4370 3 chr6B.!!$F1 2481
19 TraesCS7A01G071900 chrUn 468581920 468582646 726 False 693.000000 693 84.239000 3016 3735 1 chrUn.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 782 0.393808 TAAGCTTCGGGATGCCCAAC 60.394 55.0 0.00 0.00 45.83 3.77 F
2124 2634 0.538584 AGATCACTTGGAGCATGCGA 59.461 50.0 13.01 1.42 33.23 5.10 F
2362 3226 0.110486 GTTCTTCCTGGTGGCCTTCA 59.890 55.0 3.32 0.75 0.00 3.02 F
3624 4623 0.181114 GCATGGTGGCTGATGGACTA 59.819 55.0 0.00 0.00 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 3134 0.253044 CCCTGCTCGGAATTTCCAGA 59.747 55.000 15.58 11.75 35.91 3.86 R
4055 5057 1.065126 GTTCTCCAAGCCTAGGCACAT 60.065 52.381 34.70 18.01 44.88 3.21 R
4141 5143 2.956333 GCACCCCTCAACAAATATACCC 59.044 50.000 0.00 0.00 0.00 3.69 R
4882 7406 0.320771 AGGAACATGACACTGCGGTC 60.321 55.000 0.00 0.00 38.29 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 6.606796 AGACATGTATGGATTGCATACCAAAA 59.393 34.615 21.21 7.08 39.69 2.44
169 170 6.043854 GGAGGCAACCCAATTTTATTGTTA 57.956 37.500 0.00 0.00 37.17 2.41
197 198 8.232913 TCTTGCTTTTTGTTCCTGTTTAGTAT 57.767 30.769 0.00 0.00 0.00 2.12
262 263 7.602644 TGTGTTTTAATTAGTGTTTGTGCCAAA 59.397 29.630 0.00 0.00 0.00 3.28
273 274 4.574013 TGTTTGTGCCAAATAAAGCCTTTG 59.426 37.500 0.00 0.00 34.17 2.77
288 289 3.788142 AGCCTTTGGGATCTTCTTGGATA 59.212 43.478 0.00 0.00 33.58 2.59
309 310 7.828717 TGGATAATAGTTGTTTGATCTTGCTGA 59.171 33.333 0.00 0.00 0.00 4.26
435 437 6.185114 AGGATGTCCTAATTTCTCAGGATG 57.815 41.667 0.00 0.00 46.48 3.51
446 448 9.401058 CTAATTTCTCAGGATGTTTGGAGTTAT 57.599 33.333 0.00 0.00 37.40 1.89
650 652 8.755028 AGTACCTTAAAGTGGTGATTTGTTTTT 58.245 29.630 0.00 0.00 38.42 1.94
681 685 5.344743 AACGGAGCTCATGAGATTTTCTA 57.655 39.130 27.04 0.00 0.00 2.10
702 706 6.494842 TCTATTGAGTTTTGTGTTGTGAAGC 58.505 36.000 0.00 0.00 0.00 3.86
777 782 0.393808 TAAGCTTCGGGATGCCCAAC 60.394 55.000 0.00 0.00 45.83 3.77
859 864 1.046204 ACCCCTCTTTCGTCTTCGTT 58.954 50.000 0.00 0.00 38.33 3.85
880 885 5.444218 CGTTCATCGGTAACTTTACTTGAGC 60.444 44.000 0.00 2.99 34.16 4.26
988 994 4.425180 TCCTTGCTGTACACACCTTTTA 57.575 40.909 0.00 0.00 0.00 1.52
1008 1015 7.551974 CCTTTTAGAGAGACACACATGAATCAT 59.448 37.037 0.00 0.00 0.00 2.45
1101 1112 6.978659 CACTTATATCTTTTAGAGCACGGTGA 59.021 38.462 13.29 0.00 0.00 4.02
1362 1373 9.956720 AGTAGTTGTGAAATTGATGAAAAGAAG 57.043 29.630 0.00 0.00 0.00 2.85
1366 1377 9.252962 GTTGTGAAATTGATGAAAAGAAGTGAT 57.747 29.630 0.00 0.00 0.00 3.06
1371 1382 4.934075 TGATGAAAAGAAGTGATGAGCG 57.066 40.909 0.00 0.00 0.00 5.03
1410 1427 1.869342 GCCAGCAGCAAACACGAAAAT 60.869 47.619 0.00 0.00 42.97 1.82
1419 1436 6.249260 GCAGCAAACACGAAAATATCAGTTAG 59.751 38.462 0.00 0.00 0.00 2.34
1421 1438 5.225129 GCAAACACGAAAATATCAGTTAGCG 59.775 40.000 0.00 0.00 0.00 4.26
1435 1452 2.363680 AGTTAGCGGAGATGGTGAGATG 59.636 50.000 0.00 0.00 0.00 2.90
1454 1471 2.360844 TGAAGTTCGTTTGACCAAGCA 58.639 42.857 0.00 0.00 0.00 3.91
1456 1473 1.308998 AGTTCGTTTGACCAAGCAGG 58.691 50.000 0.00 0.00 45.67 4.85
1491 1530 4.392921 TCAAGCTCTGCCTACTCATTAC 57.607 45.455 0.00 0.00 0.00 1.89
1500 1539 6.736123 TCTGCCTACTCATTACGAAGATAAC 58.264 40.000 0.00 0.00 0.00 1.89
1507 1546 4.693283 TCATTACGAAGATAACTGCCCAG 58.307 43.478 0.00 0.00 0.00 4.45
1508 1547 2.596904 TACGAAGATAACTGCCCAGC 57.403 50.000 0.00 0.00 0.00 4.85
1582 1642 1.486310 GCTACCTGTCATGGGTCATGA 59.514 52.381 6.50 6.50 46.84 3.07
1591 1651 0.976641 ATGGGTCATGACACGTCAGT 59.023 50.000 26.47 6.11 43.61 3.41
1593 1653 1.140052 TGGGTCATGACACGTCAGTTT 59.860 47.619 26.47 0.00 43.61 2.66
1605 1709 1.616159 GTCAGTTTTGGCCTTGGCTA 58.384 50.000 11.71 2.08 0.00 3.93
1620 1724 1.424638 GGCTAGTCTGCCCCTCATTA 58.575 55.000 0.00 0.00 46.82 1.90
1634 1738 5.519927 GCCCCTCATTAACAAAATGAAATCG 59.480 40.000 2.41 0.00 36.35 3.34
1680 1784 2.888464 TAGGACAGGACCCTCGAGCG 62.888 65.000 6.99 0.00 35.30 5.03
1682 1786 4.680537 ACAGGACCCTCGAGCGGT 62.681 66.667 21.20 21.20 35.88 5.68
1709 1813 7.422399 TCCGAAGAAATGACGAAAAGAAAATT 58.578 30.769 0.00 0.00 0.00 1.82
1714 1822 8.524870 AGAAATGACGAAAAGAAAATTGATGG 57.475 30.769 0.00 0.00 0.00 3.51
1715 1823 7.599998 AGAAATGACGAAAAGAAAATTGATGGG 59.400 33.333 0.00 0.00 0.00 4.00
1748 1856 4.842531 TCATTTGACCAAGCTGGATCTA 57.157 40.909 8.91 0.00 40.96 1.98
1762 1870 1.419387 GGATCTACAGCCTTCCAGCAT 59.581 52.381 0.00 0.00 34.23 3.79
1785 1893 2.158726 TGGCTTCGGTTATATCCAACCC 60.159 50.000 2.42 0.00 44.37 4.11
1797 2090 8.225416 GGTTATATCCAACCCCTTTTAATCTCT 58.775 37.037 0.00 0.00 41.89 3.10
1798 2091 9.286170 GTTATATCCAACCCCTTTTAATCTCTC 57.714 37.037 0.00 0.00 0.00 3.20
1799 2092 5.796502 ATCCAACCCCTTTTAATCTCTCA 57.203 39.130 0.00 0.00 0.00 3.27
1800 2093 5.592587 TCCAACCCCTTTTAATCTCTCAA 57.407 39.130 0.00 0.00 0.00 3.02
1801 2094 5.321927 TCCAACCCCTTTTAATCTCTCAAC 58.678 41.667 0.00 0.00 0.00 3.18
1802 2095 5.076873 CCAACCCCTTTTAATCTCTCAACA 58.923 41.667 0.00 0.00 0.00 3.33
1803 2096 5.538433 CCAACCCCTTTTAATCTCTCAACAA 59.462 40.000 0.00 0.00 0.00 2.83
1815 2108 7.514784 AATCTCTCAACAATCAACATGACAA 57.485 32.000 0.00 0.00 0.00 3.18
1851 2144 4.074799 TCCATAGAGGAACCAAGGAGAA 57.925 45.455 0.00 0.00 45.65 2.87
1854 2207 5.104360 TCCATAGAGGAACCAAGGAGAAATG 60.104 44.000 0.00 0.00 45.65 2.32
1918 2322 5.013495 AGAGGAATTTCATCTCCTGTGTCAA 59.987 40.000 7.73 0.00 42.34 3.18
1931 2339 3.341823 CTGTGTCAATCCCAAGGAGAAG 58.658 50.000 0.00 0.00 34.05 2.85
1932 2340 2.978978 TGTGTCAATCCCAAGGAGAAGA 59.021 45.455 0.00 0.00 34.05 2.87
1933 2341 3.244561 TGTGTCAATCCCAAGGAGAAGAC 60.245 47.826 6.14 6.14 34.05 3.01
1936 2344 3.008485 GTCAATCCCAAGGAGAAGACACT 59.992 47.826 7.58 0.00 34.05 3.55
1937 2345 3.008375 TCAATCCCAAGGAGAAGACACTG 59.992 47.826 0.00 0.00 34.05 3.66
1947 2355 4.530161 AGGAGAAGACACTGTGAGCTAATT 59.470 41.667 15.86 0.00 0.00 1.40
1948 2356 5.717178 AGGAGAAGACACTGTGAGCTAATTA 59.283 40.000 15.86 0.00 0.00 1.40
1958 2366 1.946768 TGAGCTAATTAACATGCGCCC 59.053 47.619 4.18 0.00 0.00 6.13
1961 2369 1.613437 GCTAATTAACATGCGCCCCAT 59.387 47.619 4.18 0.00 33.39 4.00
1994 2407 5.681639 AGAGAAATGATCATGCACAGATGA 58.318 37.500 9.46 0.00 36.78 2.92
1995 2408 6.299922 AGAGAAATGATCATGCACAGATGAT 58.700 36.000 9.46 4.28 44.24 2.45
1996 2409 6.205658 AGAGAAATGATCATGCACAGATGATG 59.794 38.462 9.46 0.00 42.10 3.07
2001 2414 4.814771 TGATCATGCACAGATGATGTCTTC 59.185 41.667 5.27 0.00 42.10 2.87
2003 2416 2.408271 TGCACAGATGATGTCTTCCC 57.592 50.000 0.00 0.00 41.41 3.97
2067 2577 6.013032 TCCATTTGTCTCTCTCAAGGAAAGAT 60.013 38.462 0.00 0.00 0.00 2.40
2071 2581 3.055530 GTCTCTCTCAAGGAAAGATGGCA 60.056 47.826 0.00 0.00 0.00 4.92
2073 2583 3.679389 TCTCTCAAGGAAAGATGGCAAC 58.321 45.455 0.00 0.00 0.00 4.17
2084 2594 6.897413 AGGAAAGATGGCAACCTAATTAACAT 59.103 34.615 0.00 0.00 0.00 2.71
2111 2621 7.699812 GCAAAACAAGAATAAGATGGAGATCAC 59.300 37.037 0.00 0.00 0.00 3.06
2124 2634 0.538584 AGATCACTTGGAGCATGCGA 59.461 50.000 13.01 1.42 33.23 5.10
2125 2635 1.065926 AGATCACTTGGAGCATGCGAA 60.066 47.619 13.01 5.87 33.23 4.70
2126 2636 1.739466 GATCACTTGGAGCATGCGAAA 59.261 47.619 13.01 7.28 0.00 3.46
2200 2711 0.963856 TCCTGAGCATGGCAGCAAAG 60.964 55.000 10.71 7.47 36.85 2.77
2238 3098 8.859090 TCATCTCCAAAATCTAAAACACAACAT 58.141 29.630 0.00 0.00 0.00 2.71
2252 3112 1.206132 ACAACATACCTGCGGATTCGA 59.794 47.619 0.00 0.00 39.00 3.71
2274 3134 5.120830 CGAATTCGAACCATTCTCTGAAACT 59.879 40.000 23.29 0.00 43.02 2.66
2318 3182 1.906824 ACGAGAAGGAGGTGCGGAA 60.907 57.895 0.00 0.00 0.00 4.30
2334 3198 1.243902 GGAACAAAGGCGGATTCACA 58.756 50.000 0.00 0.00 0.00 3.58
2362 3226 0.110486 GTTCTTCCTGGTGGCCTTCA 59.890 55.000 3.32 0.75 0.00 3.02
2792 3657 1.743252 CCTCAGCACCTTCTTCGCC 60.743 63.158 0.00 0.00 0.00 5.54
3198 4096 5.234329 CGGAATTATCACAGCAACTACGAAT 59.766 40.000 0.00 0.00 0.00 3.34
3422 4340 6.427150 TGACGTTTCTGCAAGATTTTAAGTC 58.573 36.000 0.00 0.00 46.36 3.01
3473 4391 3.245229 ACCATGTTCATGGCTCAGGTAAA 60.245 43.478 25.89 0.00 45.47 2.01
3474 4392 3.379372 CCATGTTCATGGCTCAGGTAAAG 59.621 47.826 17.21 0.00 34.56 1.85
3475 4393 2.436417 TGTTCATGGCTCAGGTAAAGC 58.564 47.619 0.00 0.00 39.09 3.51
3476 4394 2.040278 TGTTCATGGCTCAGGTAAAGCT 59.960 45.455 0.00 0.00 39.75 3.74
3477 4395 3.084786 GTTCATGGCTCAGGTAAAGCTT 58.915 45.455 0.00 0.00 39.75 3.74
3583 4582 0.684535 TGGTCGGAACTCTGATTGCA 59.315 50.000 0.00 0.00 33.23 4.08
3624 4623 0.181114 GCATGGTGGCTGATGGACTA 59.819 55.000 0.00 0.00 0.00 2.59
3640 4639 4.236527 GGACTAAATCCCCAACATCTGT 57.763 45.455 0.00 0.00 42.46 3.41
3808 4810 2.037847 GCCATTGCCCCACTCCTT 59.962 61.111 0.00 0.00 0.00 3.36
3869 4871 3.370840 TCTTGCTTATCAACATGCCCT 57.629 42.857 0.00 0.00 0.00 5.19
3973 4975 4.338682 GGCTATGTGGTCTATAGATACCGG 59.661 50.000 5.57 0.00 38.70 5.28
4055 5057 5.645624 CATTCATGGCCGTGTTAATTTACA 58.354 37.500 24.24 0.00 0.00 2.41
4141 5143 1.457346 CTTCTTGCCCCACTGCTAAG 58.543 55.000 0.00 0.00 0.00 2.18
4409 6907 8.224389 TCAAAGTTTCAGAAAGATTCATGACA 57.776 30.769 0.00 0.00 0.00 3.58
4493 6994 6.653740 ACCAAGTACTATTCCAGCTTGTAAAC 59.346 38.462 0.00 0.00 35.94 2.01
4643 7167 4.093011 ACAAGGGCATTACCAATAAAGCA 58.907 39.130 0.00 0.00 42.05 3.91
4644 7168 4.160252 ACAAGGGCATTACCAATAAAGCAG 59.840 41.667 0.00 0.00 42.05 4.24
4646 7170 2.430332 GGGCATTACCAATAAAGCAGCA 59.570 45.455 0.00 0.00 42.05 4.41
4647 7171 3.491447 GGGCATTACCAATAAAGCAGCAG 60.491 47.826 0.00 0.00 42.05 4.24
4649 7173 3.131046 GCATTACCAATAAAGCAGCAGGT 59.869 43.478 0.00 0.00 35.52 4.00
4652 7176 5.890424 TTACCAATAAAGCAGCAGGTTAC 57.110 39.130 0.00 0.00 34.49 2.50
4653 7177 2.747446 ACCAATAAAGCAGCAGGTTACG 59.253 45.455 0.00 0.00 34.49 3.18
4654 7178 2.477863 CCAATAAAGCAGCAGGTTACGC 60.478 50.000 0.00 0.00 34.49 4.42
4655 7179 2.403252 ATAAAGCAGCAGGTTACGCT 57.597 45.000 0.00 0.00 41.47 5.07
4656 7180 1.722011 TAAAGCAGCAGGTTACGCTC 58.278 50.000 0.00 0.00 37.72 5.03
4657 7181 0.035458 AAAGCAGCAGGTTACGCTCT 59.965 50.000 0.00 0.00 37.72 4.09
4658 7182 0.390472 AAGCAGCAGGTTACGCTCTC 60.390 55.000 0.00 0.00 37.72 3.20
4659 7183 1.811679 GCAGCAGGTTACGCTCTCC 60.812 63.158 0.00 0.00 37.72 3.71
4660 7184 1.591703 CAGCAGGTTACGCTCTCCA 59.408 57.895 0.00 0.00 37.72 3.86
4661 7185 0.037326 CAGCAGGTTACGCTCTCCAA 60.037 55.000 0.00 0.00 37.72 3.53
4662 7186 0.685097 AGCAGGTTACGCTCTCCAAA 59.315 50.000 0.00 0.00 33.35 3.28
4663 7187 0.796927 GCAGGTTACGCTCTCCAAAC 59.203 55.000 0.00 0.00 0.00 2.93
4664 7188 1.876416 GCAGGTTACGCTCTCCAAACA 60.876 52.381 0.00 0.00 0.00 2.83
4665 7189 2.699954 CAGGTTACGCTCTCCAAACAT 58.300 47.619 0.00 0.00 0.00 2.71
4666 7190 2.416547 CAGGTTACGCTCTCCAAACATG 59.583 50.000 0.00 0.00 0.00 3.21
4667 7191 2.301870 AGGTTACGCTCTCCAAACATGA 59.698 45.455 0.00 0.00 0.00 3.07
4668 7192 2.673368 GGTTACGCTCTCCAAACATGAG 59.327 50.000 0.00 0.00 0.00 2.90
4669 7193 3.585862 GTTACGCTCTCCAAACATGAGA 58.414 45.455 0.00 0.00 37.33 3.27
4670 7194 2.839486 ACGCTCTCCAAACATGAGAA 57.161 45.000 0.00 0.00 38.34 2.87
4671 7195 3.126001 ACGCTCTCCAAACATGAGAAA 57.874 42.857 0.00 0.00 38.34 2.52
4672 7196 3.070018 ACGCTCTCCAAACATGAGAAAG 58.930 45.455 0.00 0.00 38.34 2.62
4673 7197 3.244215 ACGCTCTCCAAACATGAGAAAGA 60.244 43.478 0.00 0.00 38.34 2.52
4674 7198 3.748048 CGCTCTCCAAACATGAGAAAGAA 59.252 43.478 0.00 0.00 38.34 2.52
4675 7199 4.214119 CGCTCTCCAAACATGAGAAAGAAA 59.786 41.667 0.00 0.00 38.34 2.52
4676 7200 5.277974 CGCTCTCCAAACATGAGAAAGAAAA 60.278 40.000 0.00 0.00 38.34 2.29
4677 7201 6.507023 GCTCTCCAAACATGAGAAAGAAAAA 58.493 36.000 0.00 0.00 38.34 1.94
4678 7202 7.150640 GCTCTCCAAACATGAGAAAGAAAAAT 58.849 34.615 0.00 0.00 38.34 1.82
4679 7203 8.299570 GCTCTCCAAACATGAGAAAGAAAAATA 58.700 33.333 0.00 0.00 38.34 1.40
4736 7260 1.192146 TAGGACACCTCACACCTGGC 61.192 60.000 0.00 0.00 34.61 4.85
4738 7262 2.772191 ACACCTCACACCTGGCCA 60.772 61.111 4.71 4.71 0.00 5.36
4739 7263 2.337879 GACACCTCACACCTGGCCAA 62.338 60.000 7.01 0.00 0.00 4.52
4753 7277 2.360165 CTGGCCAAAAGATACATCAGGC 59.640 50.000 7.01 0.00 39.86 4.85
4755 7279 2.961062 GGCCAAAAGATACATCAGGCAT 59.039 45.455 0.00 0.00 42.26 4.40
4758 7282 4.209538 CCAAAAGATACATCAGGCATCCA 58.790 43.478 0.00 0.00 0.00 3.41
4769 7293 0.179000 AGGCATCCACGACATCTTCC 59.821 55.000 0.00 0.00 0.00 3.46
4879 7403 3.133464 CGTGGCATGACGGGCAAT 61.133 61.111 0.00 0.00 45.54 3.56
4880 7404 2.800736 GTGGCATGACGGGCAATC 59.199 61.111 0.00 0.00 45.54 2.67
4882 7406 3.585990 GGCATGACGGGCAATCGG 61.586 66.667 0.00 0.00 0.00 4.18
4890 7414 4.778143 GGGCAATCGGACCGCAGT 62.778 66.667 9.66 0.00 32.42 4.40
4891 7415 3.499737 GGCAATCGGACCGCAGTG 61.500 66.667 9.66 9.06 0.00 3.66
5005 7529 1.416401 GAGACCCCAAGAGTGTCAACA 59.584 52.381 0.00 0.00 0.00 3.33
5007 7531 1.947456 GACCCCAAGAGTGTCAACAAC 59.053 52.381 0.00 0.00 0.00 3.32
5010 7534 1.597663 CCCAAGAGTGTCAACAACGAC 59.402 52.381 0.00 0.00 36.40 4.34
5015 7539 0.529119 AGTGTCAACAACGACGACCC 60.529 55.000 0.00 0.00 38.84 4.46
5018 7542 2.027897 CAACAACGACGACCCGGA 59.972 61.111 0.73 0.00 0.00 5.14
5053 7577 2.995574 CGGAGGGGTTCGTGGAGT 60.996 66.667 0.00 0.00 0.00 3.85
5054 7578 2.663196 GGAGGGGTTCGTGGAGTG 59.337 66.667 0.00 0.00 0.00 3.51
5064 7588 2.737376 GTGGAGTGAACCGACGGC 60.737 66.667 15.39 0.00 0.00 5.68
5065 7589 3.998672 TGGAGTGAACCGACGGCC 61.999 66.667 15.39 6.40 0.00 6.13
5156 7680 1.150081 GTGCTGGAGGGGATCATGG 59.850 63.158 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 7.770801 ACAGGAACAAAAAGCAAGAAATAAC 57.229 32.000 0.00 0.00 0.00 1.89
169 170 8.040727 ACTAAACAGGAACAAAAAGCAAGAAAT 58.959 29.630 0.00 0.00 0.00 2.17
262 263 4.958581 CCAAGAAGATCCCAAAGGCTTTAT 59.041 41.667 12.95 2.53 0.00 1.40
273 274 8.624776 CAAACAACTATTATCCAAGAAGATCCC 58.375 37.037 0.00 0.00 0.00 3.85
323 324 5.984233 AAATTATTCTCGTGAGCGCATAA 57.016 34.783 11.47 2.28 38.14 1.90
650 652 5.828328 TCTCATGAGCTCCGTTAGAATAAGA 59.172 40.000 18.36 0.00 0.00 2.10
656 660 5.127845 AGAAAATCTCATGAGCTCCGTTAGA 59.872 40.000 18.36 9.25 0.00 2.10
681 685 5.329035 AGCTTCACAACACAAAACTCAAT 57.671 34.783 0.00 0.00 0.00 2.57
702 706 8.940768 TCAAATCTTTACCCAAAACTTGAAAG 57.059 30.769 0.00 0.00 0.00 2.62
777 782 0.815095 GGATTTTACCTTGGGGTGCG 59.185 55.000 0.00 0.00 46.75 5.34
840 845 1.000618 GAACGAAGACGAAAGAGGGGT 59.999 52.381 0.00 0.00 42.66 4.95
859 864 4.222145 AGGCTCAAGTAAAGTTACCGATGA 59.778 41.667 0.00 1.09 34.19 2.92
959 965 3.008923 TGTGTACAGCAAGGATGATTGGA 59.991 43.478 0.00 0.00 0.00 3.53
1153 1164 5.641209 CCATGTTGTTCTAAAGGACTCTCAG 59.359 44.000 0.00 0.00 0.00 3.35
1328 1339 8.993121 CATCAATTTCACAACTACTCAACTAGT 58.007 33.333 0.00 0.00 42.62 2.57
1362 1373 1.526041 GTCATCATCAGCGCTCATCAC 59.474 52.381 7.13 0.00 0.00 3.06
1366 1377 0.179092 CCTGTCATCATCAGCGCTCA 60.179 55.000 7.13 0.00 0.00 4.26
1371 1382 1.950828 CTGGTCCTGTCATCATCAGC 58.049 55.000 0.00 0.00 0.00 4.26
1399 1410 5.640357 TCCGCTAACTGATATTTTCGTGTTT 59.360 36.000 0.00 0.00 0.00 2.83
1405 1416 5.992217 ACCATCTCCGCTAACTGATATTTTC 59.008 40.000 0.00 0.00 0.00 2.29
1410 1427 3.562182 TCACCATCTCCGCTAACTGATA 58.438 45.455 0.00 0.00 0.00 2.15
1419 1436 1.137872 ACTTCATCTCACCATCTCCGC 59.862 52.381 0.00 0.00 0.00 5.54
1421 1438 3.118956 ACGAACTTCATCTCACCATCTCC 60.119 47.826 0.00 0.00 0.00 3.71
1435 1452 2.287009 CCTGCTTGGTCAAACGAACTTC 60.287 50.000 0.00 0.00 0.00 3.01
1491 1530 2.890808 TAGCTGGGCAGTTATCTTCG 57.109 50.000 0.00 0.00 0.00 3.79
1500 1539 3.940209 TGACAAAAATTAGCTGGGCAG 57.060 42.857 0.00 0.00 0.00 4.85
1507 1546 4.402474 AGGTGGCCTATGACAAAAATTAGC 59.598 41.667 3.32 0.00 28.47 3.09
1508 1547 6.152661 TGAAGGTGGCCTATGACAAAAATTAG 59.847 38.462 3.32 0.00 31.13 1.73
1582 1642 0.738389 CAAGGCCAAAACTGACGTGT 59.262 50.000 5.01 0.00 0.00 4.49
1591 1651 1.909700 CAGACTAGCCAAGGCCAAAA 58.090 50.000 5.01 0.00 43.17 2.44
1593 1653 1.002134 GCAGACTAGCCAAGGCCAA 60.002 57.895 5.01 0.00 43.17 4.52
1605 1709 3.806949 TTTGTTAATGAGGGGCAGACT 57.193 42.857 0.00 0.00 0.00 3.24
1613 1717 9.571810 TTCATCGATTTCATTTTGTTAATGAGG 57.428 29.630 0.00 0.00 37.86 3.86
1647 1751 5.304614 GTCCTGTCCTATGTTAATGCTCCTA 59.695 44.000 0.00 0.00 0.00 2.94
1659 1763 1.323412 CTCGAGGGTCCTGTCCTATG 58.677 60.000 3.91 0.00 34.21 2.23
1663 1767 3.827898 CGCTCGAGGGTCCTGTCC 61.828 72.222 20.59 0.00 0.00 4.02
1680 1784 5.579511 TCTTTTCGTCATTTCTTCGGATACC 59.420 40.000 0.00 0.00 0.00 2.73
1682 1786 7.661127 TTTCTTTTCGTCATTTCTTCGGATA 57.339 32.000 0.00 0.00 0.00 2.59
1709 1813 7.068593 GTCAAATGATATGGTTTCTTCCCATCA 59.931 37.037 0.00 0.00 41.77 3.07
1714 1822 6.773976 TGGTCAAATGATATGGTTTCTTCC 57.226 37.500 0.00 0.00 0.00 3.46
1715 1823 6.753744 GCTTGGTCAAATGATATGGTTTCTTC 59.246 38.462 0.00 0.00 0.00 2.87
1762 1870 3.181458 GGTTGGATATAACCGAAGCCAGA 60.181 47.826 0.00 0.00 40.58 3.86
1785 1893 9.350357 CATGTTGATTGTTGAGAGATTAAAAGG 57.650 33.333 0.00 0.00 0.00 3.11
1803 2096 9.236006 GGGCTATTATTCTATTGTCATGTTGAT 57.764 33.333 0.00 0.00 0.00 2.57
1812 2105 8.917414 TCTATGGAGGGCTATTATTCTATTGT 57.083 34.615 0.00 0.00 0.00 2.71
1840 2133 4.731313 AGGAAGACATTTCTCCTTGGTT 57.269 40.909 0.00 0.00 29.73 3.67
1842 2135 5.072741 TGAAAGGAAGACATTTCTCCTTGG 58.927 41.667 11.16 0.00 44.01 3.61
1844 2137 6.546484 TGATGAAAGGAAGACATTTCTCCTT 58.454 36.000 0.00 6.73 44.01 3.36
1846 2139 6.207417 TGTTGATGAAAGGAAGACATTTCTCC 59.793 38.462 0.00 0.00 44.01 3.71
1847 2140 7.206981 TGTTGATGAAAGGAAGACATTTCTC 57.793 36.000 0.00 0.00 44.01 2.87
1848 2141 7.771927 ATGTTGATGAAAGGAAGACATTTCT 57.228 32.000 0.00 0.00 44.01 2.52
1849 2142 9.912634 TTTATGTTGATGAAAGGAAGACATTTC 57.087 29.630 0.00 0.00 43.96 2.17
1918 2322 2.304180 CACAGTGTCTTCTCCTTGGGAT 59.696 50.000 0.00 0.00 0.00 3.85
1931 2339 5.563842 GCATGTTAATTAGCTCACAGTGTC 58.436 41.667 0.00 0.00 0.00 3.67
1932 2340 4.093408 CGCATGTTAATTAGCTCACAGTGT 59.907 41.667 0.00 0.00 0.00 3.55
1933 2341 4.581493 CGCATGTTAATTAGCTCACAGTG 58.419 43.478 0.00 0.00 0.00 3.66
1936 2344 2.354510 GGCGCATGTTAATTAGCTCACA 59.645 45.455 10.83 0.00 0.00 3.58
1937 2345 2.287009 GGGCGCATGTTAATTAGCTCAC 60.287 50.000 10.83 0.00 0.00 3.51
1947 2355 0.822944 CCATCATGGGGCGCATGTTA 60.823 55.000 34.40 22.13 32.67 2.41
1948 2356 2.129146 CCATCATGGGGCGCATGTT 61.129 57.895 34.40 26.96 32.67 2.71
1958 2366 5.557576 TCATTTCTCTCCTACCATCATGG 57.442 43.478 0.54 0.54 45.02 3.66
1961 2369 6.743490 GCATGATCATTTCTCTCCTACCATCA 60.743 42.308 5.16 0.00 0.00 3.07
1994 2407 5.251700 ACAATCTTACTGAAGGGGAAGACAT 59.748 40.000 0.00 0.00 33.09 3.06
1995 2408 4.597507 ACAATCTTACTGAAGGGGAAGACA 59.402 41.667 0.00 0.00 33.09 3.41
1996 2409 5.167303 ACAATCTTACTGAAGGGGAAGAC 57.833 43.478 0.00 0.00 33.09 3.01
2001 2414 6.715264 AGTTTTGTACAATCTTACTGAAGGGG 59.285 38.462 9.56 0.00 33.09 4.79
2003 2416 7.444183 TCCAGTTTTGTACAATCTTACTGAAGG 59.556 37.037 25.93 17.08 34.87 3.46
2067 2577 5.474578 TTTGCATGTTAATTAGGTTGCCA 57.525 34.783 10.99 1.29 0.00 4.92
2071 2581 9.777297 ATTCTTGTTTTGCATGTTAATTAGGTT 57.223 25.926 0.00 0.00 0.00 3.50
2084 2594 7.394077 TGATCTCCATCTTATTCTTGTTTTGCA 59.606 33.333 0.00 0.00 0.00 4.08
2200 2711 9.606631 AGATTTTGGAGATGATACAAAGTCTAC 57.393 33.333 8.36 0.00 44.18 2.59
2238 3098 1.847818 CGAATTCGAATCCGCAGGTA 58.152 50.000 23.29 0.00 46.72 3.08
2252 3112 6.148480 CAGAGTTTCAGAGAATGGTTCGAATT 59.852 38.462 0.00 0.00 34.02 2.17
2274 3134 0.253044 CCCTGCTCGGAATTTCCAGA 59.747 55.000 15.58 11.75 35.91 3.86
2318 3182 1.852067 GCGTGTGAATCCGCCTTTGT 61.852 55.000 0.00 0.00 43.96 2.83
2334 3198 1.302033 CAGGAAGAACTGGCTGCGT 60.302 57.895 0.00 0.00 34.84 5.24
2362 3226 3.017442 TGTAGTAGACGAAGCTGCAGAT 58.983 45.455 20.43 8.90 0.00 2.90
2881 3754 4.521130 TTCTGCGAAACTGACTGACTAT 57.479 40.909 0.00 0.00 0.00 2.12
3198 4096 5.446143 AATTTGTCAAATTGCGTACCTGA 57.554 34.783 20.27 0.00 39.50 3.86
3231 4136 2.567169 CTGGTGGTCTGGAGTTGTATGA 59.433 50.000 0.00 0.00 0.00 2.15
3422 4340 2.213499 GAATCTTCATGTAGTGGCCCG 58.787 52.381 0.00 0.00 0.00 6.13
3473 4391 6.549364 ACAGAGCAACTATATGAGTAGAAGCT 59.451 38.462 0.00 0.00 37.44 3.74
3474 4392 6.744112 ACAGAGCAACTATATGAGTAGAAGC 58.256 40.000 0.00 0.00 37.44 3.86
3475 4393 7.935520 TGACAGAGCAACTATATGAGTAGAAG 58.064 38.462 0.00 0.00 37.44 2.85
3476 4394 7.881775 TGACAGAGCAACTATATGAGTAGAA 57.118 36.000 0.00 0.00 37.44 2.10
3477 4395 8.470657 AATGACAGAGCAACTATATGAGTAGA 57.529 34.615 0.00 0.00 37.44 2.59
3583 4582 3.561143 TGTTCCAAGGTACACAAATGCT 58.439 40.909 0.00 0.00 0.00 3.79
3624 4623 3.157087 GTGTCACAGATGTTGGGGATTT 58.843 45.455 0.00 0.00 0.00 2.17
3640 4639 2.680352 GGGAGGAGCTCGGTGTCA 60.680 66.667 7.83 0.00 0.00 3.58
3790 4792 3.944250 AAGGAGTGGGGCAATGGCG 62.944 63.158 0.00 0.00 42.47 5.69
3808 4810 1.102154 CCTTGTGTGCAAACCAGACA 58.898 50.000 9.68 0.00 44.95 3.41
4055 5057 1.065126 GTTCTCCAAGCCTAGGCACAT 60.065 52.381 34.70 18.01 44.88 3.21
4141 5143 2.956333 GCACCCCTCAACAAATATACCC 59.044 50.000 0.00 0.00 0.00 3.69
4605 7129 5.652014 TGCCCTTGTTAATCTACTCATTTGG 59.348 40.000 0.00 0.00 0.00 3.28
4644 7168 0.796927 GTTTGGAGAGCGTAACCTGC 59.203 55.000 0.00 0.00 0.00 4.85
4646 7170 2.301870 TCATGTTTGGAGAGCGTAACCT 59.698 45.455 0.00 0.00 0.00 3.50
4647 7171 2.673368 CTCATGTTTGGAGAGCGTAACC 59.327 50.000 0.00 0.00 34.24 2.85
4649 7173 3.953712 TCTCATGTTTGGAGAGCGTAA 57.046 42.857 0.00 0.00 36.52 3.18
4652 7176 3.329386 TCTTTCTCATGTTTGGAGAGCG 58.671 45.455 0.00 0.00 42.00 5.03
4653 7177 5.695851 TTTCTTTCTCATGTTTGGAGAGC 57.304 39.130 0.00 0.00 42.00 4.09
4678 7202 9.941664 CTCTTCCTTCTTACGTTCGTATATTTA 57.058 33.333 5.91 0.00 0.00 1.40
4679 7203 7.434602 GCTCTTCCTTCTTACGTTCGTATATTT 59.565 37.037 5.91 0.00 0.00 1.40
4680 7204 6.916932 GCTCTTCCTTCTTACGTTCGTATATT 59.083 38.462 5.91 0.00 0.00 1.28
4681 7205 6.262720 AGCTCTTCCTTCTTACGTTCGTATAT 59.737 38.462 5.91 0.00 0.00 0.86
4682 7206 5.587844 AGCTCTTCCTTCTTACGTTCGTATA 59.412 40.000 5.91 0.00 0.00 1.47
4683 7207 4.398673 AGCTCTTCCTTCTTACGTTCGTAT 59.601 41.667 5.91 0.00 0.00 3.06
4684 7208 3.755378 AGCTCTTCCTTCTTACGTTCGTA 59.245 43.478 0.00 0.78 0.00 3.43
4685 7209 2.557490 AGCTCTTCCTTCTTACGTTCGT 59.443 45.455 0.00 2.91 0.00 3.85
4686 7210 3.219052 AGCTCTTCCTTCTTACGTTCG 57.781 47.619 0.00 0.00 0.00 3.95
4687 7211 4.106909 GCTAGCTCTTCCTTCTTACGTTC 58.893 47.826 7.70 0.00 0.00 3.95
4688 7212 3.764972 AGCTAGCTCTTCCTTCTTACGTT 59.235 43.478 12.68 0.00 0.00 3.99
4689 7213 3.358118 AGCTAGCTCTTCCTTCTTACGT 58.642 45.455 12.68 0.00 0.00 3.57
4736 7260 4.037208 GTGGATGCCTGATGTATCTTTTGG 59.963 45.833 0.00 0.00 36.43 3.28
4738 7262 3.879295 CGTGGATGCCTGATGTATCTTTT 59.121 43.478 0.00 0.00 36.43 2.27
4739 7263 3.134623 TCGTGGATGCCTGATGTATCTTT 59.865 43.478 0.00 0.00 36.43 2.52
4753 7277 1.154205 GGCGGAAGATGTCGTGGATG 61.154 60.000 0.00 0.00 0.00 3.51
4755 7279 2.577059 GGCGGAAGATGTCGTGGA 59.423 61.111 0.00 0.00 0.00 4.02
4758 7282 4.143333 CCGGGCGGAAGATGTCGT 62.143 66.667 0.00 0.00 37.50 4.34
4786 7310 2.165845 ACCTGACATAGTACAACGGAGC 59.834 50.000 0.00 0.00 0.00 4.70
4868 7392 2.189521 GGTCCGATTGCCCGTCAT 59.810 61.111 0.00 0.00 0.00 3.06
4869 7393 4.444838 CGGTCCGATTGCCCGTCA 62.445 66.667 4.91 0.00 37.00 4.35
4879 7403 2.094757 AACATGACACTGCGGTCCGA 62.095 55.000 17.49 0.00 36.97 4.55
4880 7404 1.626654 GAACATGACACTGCGGTCCG 61.627 60.000 6.99 6.99 36.97 4.79
4882 7406 0.320771 AGGAACATGACACTGCGGTC 60.321 55.000 0.00 0.00 38.29 4.79
4890 7414 1.338105 CCGAAGCAGAGGAACATGACA 60.338 52.381 0.00 0.00 0.00 3.58
4891 7415 1.363744 CCGAAGCAGAGGAACATGAC 58.636 55.000 0.00 0.00 0.00 3.06
4962 7486 4.316823 ACCGACCTCTCCAGCCCA 62.317 66.667 0.00 0.00 0.00 5.36
5005 7529 3.368571 GAGGTCCGGGTCGTCGTT 61.369 66.667 0.00 0.00 0.00 3.85
5010 7534 4.530857 GCATGGAGGTCCGGGTCG 62.531 72.222 0.00 0.00 39.43 4.79
5015 7539 4.899239 GGAGCGCATGGAGGTCCG 62.899 72.222 11.47 0.00 44.82 4.79
5018 7542 4.479993 GCAGGAGCGCATGGAGGT 62.480 66.667 11.47 0.00 0.00 3.85
5156 7680 1.577328 CCCAACATCGACACACCAGC 61.577 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.