Multiple sequence alignment - TraesCS7A01G071800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G071800 chr7A 100.000 2769 0 0 1 2769 37710974 37708206 0.000000e+00 5114
1 TraesCS7A01G071800 chr7A 81.373 204 32 4 76 278 9748151 9748349 7.940000e-36 161
2 TraesCS7A01G071800 chr7D 91.675 949 42 12 1515 2440 38185781 38184847 0.000000e+00 1280
3 TraesCS7A01G071800 chr7D 95.071 771 29 7 1 766 38187531 38186765 0.000000e+00 1205
4 TraesCS7A01G071800 chr7D 90.634 694 40 7 803 1494 38186441 38185771 0.000000e+00 898
5 TraesCS7A01G071800 chr7D 87.850 321 29 5 2459 2769 38184606 38184286 4.360000e-98 368
6 TraesCS7A01G071800 chr4B 80.146 1093 123 42 1066 2117 478186095 478185056 0.000000e+00 730
7 TraesCS7A01G071800 chr4A 82.230 816 72 26 1167 1957 686549826 686549059 1.080000e-178 636
8 TraesCS7A01G071800 chr4A 80.292 685 80 37 803 1471 642208796 642209441 1.500000e-127 466
9 TraesCS7A01G071800 chr4A 85.931 462 35 14 1682 2114 642209498 642209958 1.500000e-127 466
10 TraesCS7A01G071800 chr4A 80.556 540 70 25 89 606 78782915 78783441 1.560000e-102 383
11 TraesCS7A01G071800 chr4A 88.474 321 30 3 2456 2769 642210020 642210340 5.600000e-102 381
12 TraesCS7A01G071800 chr4A 76.883 385 68 15 99 470 637702514 637702138 6.050000e-47 198
13 TraesCS7A01G071800 chr4A 84.746 177 16 6 2582 2758 686549006 686548841 1.710000e-37 167
14 TraesCS7A01G071800 chr3A 78.503 628 95 30 1 605 120300579 120299969 2.600000e-100 375
15 TraesCS7A01G071800 chr3A 77.932 648 92 35 10 631 51012289 51011667 9.430000e-95 357
16 TraesCS7A01G071800 chr6A 80.632 475 60 23 211 660 199991915 199991448 3.420000e-89 339
17 TraesCS7A01G071800 chr6D 76.750 400 59 24 10 392 26090534 26090152 2.810000e-45 193
18 TraesCS7A01G071800 chr3D 77.681 345 43 18 300 630 180876581 180876257 2.190000e-41 180
19 TraesCS7A01G071800 chr7B 77.947 263 46 10 10 271 623720777 623720526 1.330000e-33 154
20 TraesCS7A01G071800 chr7B 77.273 286 34 19 1 262 527959917 527960195 3.720000e-29 139
21 TraesCS7A01G071800 chr7B 82.014 139 22 3 300 438 725389019 725389154 6.270000e-22 115
22 TraesCS7A01G071800 chr5A 84.568 162 17 5 96 255 76200675 76200520 1.330000e-33 154
23 TraesCS7A01G071800 chr2B 82.682 179 21 6 90 265 708204238 708204409 1.720000e-32 150
24 TraesCS7A01G071800 chr6B 76.667 300 47 18 38 324 482759695 482759406 7.990000e-31 145
25 TraesCS7A01G071800 chr3B 80.282 213 23 14 300 508 259245885 259245688 2.870000e-30 143
26 TraesCS7A01G071800 chr5B 86.765 68 7 2 458 524 349138222 349138156 1.060000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G071800 chr7A 37708206 37710974 2768 True 5114.000000 5114 100.0000 1 2769 1 chr7A.!!$R1 2768
1 TraesCS7A01G071800 chr7D 38184286 38187531 3245 True 937.750000 1280 91.3075 1 2769 4 chr7D.!!$R1 2768
2 TraesCS7A01G071800 chr4B 478185056 478186095 1039 True 730.000000 730 80.1460 1066 2117 1 chr4B.!!$R1 1051
3 TraesCS7A01G071800 chr4A 642208796 642210340 1544 False 437.666667 466 84.8990 803 2769 3 chr4A.!!$F2 1966
4 TraesCS7A01G071800 chr4A 686548841 686549826 985 True 401.500000 636 83.4880 1167 2758 2 chr4A.!!$R2 1591
5 TraesCS7A01G071800 chr4A 78782915 78783441 526 False 383.000000 383 80.5560 89 606 1 chr4A.!!$F1 517
6 TraesCS7A01G071800 chr3A 120299969 120300579 610 True 375.000000 375 78.5030 1 605 1 chr3A.!!$R2 604
7 TraesCS7A01G071800 chr3A 51011667 51012289 622 True 357.000000 357 77.9320 10 631 1 chr3A.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 829 0.179 CAAAGCTCAGGATAGCCCGT 59.821 55.0 0.0 0.0 43.86 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 3482 1.21119 CTCTTTTGCCAGCCGCTTC 59.789 57.895 0.0 0.0 38.78 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
343 387 6.542574 TTTTTCCATGCACATTTCACATTC 57.457 33.333 0.00 0.00 0.00 2.67
666 727 2.353803 GGTCTAATATGGAGCGGCGAAT 60.354 50.000 12.98 0.00 0.00 3.34
766 827 2.426842 AACAAAGCTCAGGATAGCCC 57.573 50.000 0.00 0.00 43.86 5.19
768 829 0.179000 CAAAGCTCAGGATAGCCCGT 59.821 55.000 0.00 0.00 43.86 5.28
769 830 0.466124 AAAGCTCAGGATAGCCCGTC 59.534 55.000 0.00 0.00 43.86 4.79
770 831 0.397816 AAGCTCAGGATAGCCCGTCT 60.398 55.000 0.00 0.00 43.86 4.18
773 834 0.958091 CTCAGGATAGCCCGTCTCAG 59.042 60.000 0.00 0.00 40.87 3.35
774 835 1.109920 TCAGGATAGCCCGTCTCAGC 61.110 60.000 0.00 0.00 40.87 4.26
775 836 1.834822 AGGATAGCCCGTCTCAGCC 60.835 63.158 0.00 0.00 40.87 4.85
776 837 2.134287 GGATAGCCCGTCTCAGCCA 61.134 63.158 0.00 0.00 0.00 4.75
777 838 1.068250 GATAGCCCGTCTCAGCCAC 59.932 63.158 0.00 0.00 0.00 5.01
1053 1423 0.539051 CGGCAGAGGAGGAGAACAAT 59.461 55.000 0.00 0.00 0.00 2.71
1055 1425 2.482142 CGGCAGAGGAGGAGAACAATAC 60.482 54.545 0.00 0.00 0.00 1.89
1173 1549 1.153939 AGCGCGCTCTGTAAGTCTG 60.154 57.895 31.32 0.00 33.76 3.51
1174 1550 1.444553 GCGCGCTCTGTAAGTCTGT 60.445 57.895 26.67 0.00 33.76 3.41
1175 1551 0.179171 GCGCGCTCTGTAAGTCTGTA 60.179 55.000 26.67 0.00 33.76 2.74
1176 1552 1.816370 CGCGCTCTGTAAGTCTGTAG 58.184 55.000 5.56 0.00 33.76 2.74
1177 1553 1.130749 CGCGCTCTGTAAGTCTGTAGT 59.869 52.381 5.56 0.00 33.76 2.73
1178 1554 2.350804 CGCGCTCTGTAAGTCTGTAGTA 59.649 50.000 5.56 0.00 33.76 1.82
1181 1557 4.494526 GCGCTCTGTAAGTCTGTAGTACTC 60.495 50.000 0.00 0.00 33.76 2.59
1182 1558 4.034279 CGCTCTGTAAGTCTGTAGTACTCC 59.966 50.000 0.00 0.00 33.76 3.85
1219 1607 4.284234 GCAAATGCCACCAGGGATATAAAT 59.716 41.667 0.00 0.00 46.42 1.40
1225 1613 4.280929 GCCACCAGGGATATAAATTTGGAC 59.719 45.833 0.00 0.00 40.01 4.02
1231 1619 6.288294 CAGGGATATAAATTTGGACGAGTGA 58.712 40.000 0.00 0.00 0.00 3.41
1235 1624 7.444183 GGGATATAAATTTGGACGAGTGATTCA 59.556 37.037 0.00 0.00 0.00 2.57
1236 1625 9.003658 GGATATAAATTTGGACGAGTGATTCAT 57.996 33.333 0.00 0.00 0.00 2.57
1256 1645 7.643569 TTCATAAAGCAGCATTGAAGGAATA 57.356 32.000 0.00 0.00 0.00 1.75
1258 1651 4.725790 AAAGCAGCATTGAAGGAATACC 57.274 40.909 0.00 0.00 0.00 2.73
1264 1657 3.382546 AGCATTGAAGGAATACCACATGC 59.617 43.478 0.00 0.00 38.94 4.06
1267 1660 3.719268 TGAAGGAATACCACATGCTGT 57.281 42.857 0.00 0.00 38.94 4.40
1286 1680 6.198687 TGCTGTAAGAAAATGTTTGAACTCG 58.801 36.000 0.00 0.00 34.07 4.18
1291 1685 6.451064 AAGAAAATGTTTGAACTCGGAACT 57.549 33.333 0.00 0.00 0.00 3.01
1325 1720 2.476854 GCATCTGAAAACGAGGACATGC 60.477 50.000 0.00 0.00 0.00 4.06
1373 1768 5.447818 GCAATCCTTACAAGTGTATGCTCAC 60.448 44.000 6.70 0.00 38.46 3.51
1382 1777 5.696724 ACAAGTGTATGCTCACAGAAACTAC 59.303 40.000 9.15 0.00 40.37 2.73
1384 1779 5.853936 AGTGTATGCTCACAGAAACTACAA 58.146 37.500 9.15 0.00 40.37 2.41
1391 1786 4.150804 GCTCACAGAAACTACAACTGCTAC 59.849 45.833 0.00 0.00 35.38 3.58
1421 1821 4.214971 GTGGCTGCTTGATATACTTGGATG 59.785 45.833 0.00 0.00 0.00 3.51
1446 1846 5.843673 TGGAATCTAGTCTAGTGCTTCTG 57.156 43.478 6.77 0.00 0.00 3.02
1486 1896 1.039856 ATTGGACACCAACAGCCAAC 58.960 50.000 5.33 0.00 46.95 3.77
1502 1912 2.158449 GCCAACAAGTGATGTCTTCTCG 59.842 50.000 0.00 0.00 42.99 4.04
1530 1940 9.941664 ACGATTTTAGCAAGAATAATTCAGATG 57.058 29.630 0.00 0.00 0.00 2.90
1781 2221 7.042925 GCTTGGCAAGATGACAATATTTCATTC 60.043 37.037 30.45 2.39 45.60 2.67
1852 2292 0.319900 CGTACAGCCAACAGAGCAGT 60.320 55.000 0.00 0.00 34.12 4.40
1912 2369 2.551912 CGCCGGTTTTTCACAGCCT 61.552 57.895 1.90 0.00 0.00 4.58
1958 2415 7.685481 TCTTTCTGGTTTAAGATGACCACATA 58.315 34.615 0.00 0.00 40.85 2.29
2080 2562 8.484641 AGTATTGATCTGACAAGTAACACATG 57.515 34.615 0.00 0.00 33.22 3.21
2105 2587 5.705441 CCAGGTCAGTGCACTTTTAATAAGA 59.295 40.000 18.94 5.84 0.00 2.10
2125 2607 9.836864 AATAAGAAGTGCATTCATGTATCAGTA 57.163 29.630 10.26 0.00 40.67 2.74
2127 2609 8.743085 AAGAAGTGCATTCATGTATCAGTATT 57.257 30.769 10.26 0.00 40.67 1.89
2128 2610 8.743085 AGAAGTGCATTCATGTATCAGTATTT 57.257 30.769 10.26 0.00 40.67 1.40
2129 2611 8.834465 AGAAGTGCATTCATGTATCAGTATTTC 58.166 33.333 10.26 0.00 40.67 2.17
2130 2612 8.510243 AAGTGCATTCATGTATCAGTATTTCA 57.490 30.769 0.00 0.00 0.00 2.69
2131 2613 8.151141 AGTGCATTCATGTATCAGTATTTCAG 57.849 34.615 0.00 0.00 0.00 3.02
2133 2615 9.045223 GTGCATTCATGTATCAGTATTTCAGTA 57.955 33.333 0.00 0.00 0.00 2.74
2134 2616 9.783081 TGCATTCATGTATCAGTATTTCAGTAT 57.217 29.630 0.00 0.00 0.00 2.12
2138 2620 9.612066 TTCATGTATCAGTATTTCAGTATTGCA 57.388 29.630 0.00 0.00 0.00 4.08
2139 2621 9.264719 TCATGTATCAGTATTTCAGTATTGCAG 57.735 33.333 0.00 0.00 0.00 4.41
2181 2663 4.789807 ACCCTGAATGAGAGGAATGAATG 58.210 43.478 0.00 0.00 31.48 2.67
2196 2678 5.007136 GGAATGAATGTAAGAAGAGAAGCGG 59.993 44.000 0.00 0.00 0.00 5.52
2247 2741 4.520179 TGAGACCATCCATCATCTTGTTG 58.480 43.478 0.00 0.00 0.00 3.33
2258 2752 3.688235 TCATCTTGTTGTCCATGCATGA 58.312 40.909 28.31 11.26 0.00 3.07
2264 2758 4.019792 TGTTGTCCATGCATGAAGTAGT 57.980 40.909 28.31 0.00 0.00 2.73
2271 2765 5.182001 GTCCATGCATGAAGTAGTCTTGTTT 59.818 40.000 28.31 0.00 34.58 2.83
2272 2766 5.181811 TCCATGCATGAAGTAGTCTTGTTTG 59.818 40.000 28.31 5.24 34.58 2.93
2304 2798 2.289444 TGCAGTAGTTGGTGCTCTTACC 60.289 50.000 0.00 0.00 40.54 2.85
2327 2821 2.684943 TCTAGTTGGTGGTCTGGTTGA 58.315 47.619 0.00 0.00 0.00 3.18
2336 2830 3.411446 GTGGTCTGGTTGATGTGAATCA 58.589 45.455 0.00 0.00 0.00 2.57
2354 2848 3.085952 TCAGCCTAACCCTTTTCATGG 57.914 47.619 0.00 0.00 0.00 3.66
2427 2928 3.831911 TCCGAAAAGATTTGCCAATTCCT 59.168 39.130 0.00 0.00 0.00 3.36
2440 2941 4.082081 TGCCAATTCCTGTGACAATTCATC 60.082 41.667 0.00 0.00 33.11 2.92
2441 2942 4.082081 GCCAATTCCTGTGACAATTCATCA 60.082 41.667 0.00 0.00 33.11 3.07
2442 2943 5.394883 GCCAATTCCTGTGACAATTCATCAT 60.395 40.000 0.00 0.00 33.11 2.45
2443 2944 6.040247 CCAATTCCTGTGACAATTCATCATG 58.960 40.000 0.00 0.00 33.11 3.07
2445 2946 7.148035 CCAATTCCTGTGACAATTCATCATGTA 60.148 37.037 0.00 0.00 33.11 2.29
2446 2947 8.410912 CAATTCCTGTGACAATTCATCATGTAT 58.589 33.333 0.00 0.00 33.11 2.29
2448 2949 7.943079 TCCTGTGACAATTCATCATGTATTT 57.057 32.000 0.00 0.00 33.11 1.40
2451 2952 7.160547 TGTGACAATTCATCATGTATTTGCT 57.839 32.000 0.00 0.00 33.11 3.91
2452 2953 7.030768 TGTGACAATTCATCATGTATTTGCTG 58.969 34.615 0.00 0.00 33.11 4.41
2453 2954 7.094291 TGTGACAATTCATCATGTATTTGCTGA 60.094 33.333 0.00 0.00 33.11 4.26
2457 3200 8.692710 ACAATTCATCATGTATTTGCTGATCTT 58.307 29.630 0.00 0.00 0.00 2.40
2488 3231 1.596603 TGATCATGGTGCTATTGGCG 58.403 50.000 0.00 0.00 45.43 5.69
2545 3288 6.646653 TGATCATATCAGCTTGTAAATCCGAC 59.353 38.462 0.00 0.00 33.59 4.79
2573 3316 5.838531 ACAGACTAAGCAGTACTGGATAC 57.161 43.478 23.95 7.52 35.74 2.24
2616 3385 6.147492 ACTCTACTTATTAGTACTCATCGCCG 59.853 42.308 0.00 0.00 35.78 6.46
2624 3393 3.248266 AGTACTCATCGCCGTTAACAAC 58.752 45.455 6.39 0.00 0.00 3.32
2644 3413 1.134901 CTCTGTTCCGGTCTCGTCG 59.865 63.158 0.00 0.00 33.95 5.12
2647 3416 2.254703 CTGTTCCGGTCTCGTCGAGG 62.255 65.000 21.63 7.15 33.95 4.63
2695 3472 3.535561 CCTGGATCGCAATATACCCATC 58.464 50.000 0.00 0.00 0.00 3.51
2707 3484 2.847234 CCCATCGATCCGGGGGAA 60.847 66.667 12.22 0.00 41.77 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
666 727 2.678934 ACGGGCGCTGAGGAAGTA 60.679 61.111 7.64 0.00 0.00 2.24
994 1364 1.246056 GCAGCACCCTTCATCTTGCA 61.246 55.000 0.00 0.00 37.44 4.08
1173 1549 7.434492 TGCTGCTTATGAATTAGGAGTACTAC 58.566 38.462 0.00 0.00 32.98 2.73
1174 1550 7.597288 TGCTGCTTATGAATTAGGAGTACTA 57.403 36.000 0.00 0.00 32.98 1.82
1175 1551 6.485830 TGCTGCTTATGAATTAGGAGTACT 57.514 37.500 0.00 0.00 32.98 2.73
1176 1552 7.553881 TTTGCTGCTTATGAATTAGGAGTAC 57.446 36.000 0.00 0.00 32.98 2.73
1177 1553 8.158169 CATTTGCTGCTTATGAATTAGGAGTA 57.842 34.615 0.00 0.00 32.98 2.59
1178 1554 7.035840 CATTTGCTGCTTATGAATTAGGAGT 57.964 36.000 0.00 0.00 32.98 3.85
1219 1607 5.000591 TGCTTTATGAATCACTCGTCCAAA 58.999 37.500 0.00 0.00 0.00 3.28
1225 1613 4.808077 ATGCTGCTTTATGAATCACTCG 57.192 40.909 0.00 0.00 0.00 4.18
1231 1619 6.534475 TTCCTTCAATGCTGCTTTATGAAT 57.466 33.333 0.00 0.00 30.39 2.57
1235 1624 5.893255 TGGTATTCCTTCAATGCTGCTTTAT 59.107 36.000 0.00 0.00 34.23 1.40
1236 1625 5.125417 GTGGTATTCCTTCAATGCTGCTTTA 59.875 40.000 0.00 0.00 34.23 1.85
1264 1657 6.954944 TCCGAGTTCAAACATTTTCTTACAG 58.045 36.000 0.00 0.00 0.00 2.74
1267 1660 7.562454 AGTTCCGAGTTCAAACATTTTCTTA 57.438 32.000 0.00 0.00 0.00 2.10
1286 1680 6.372659 TCAGATGCAGAACAGATAAAAGTTCC 59.627 38.462 0.00 0.00 43.89 3.62
1291 1685 7.041440 TCGTTTTCAGATGCAGAACAGATAAAA 60.041 33.333 0.00 0.00 0.00 1.52
1325 1720 9.781834 TGCGACAACTAATTAGGATTTTAATTG 57.218 29.630 16.73 10.97 35.47 2.32
1348 1743 3.623060 AGCATACACTTGTAAGGATTGCG 59.377 43.478 6.36 0.00 31.30 4.85
1373 1768 8.298140 ACTTACTAGTAGCAGTTGTAGTTTCTG 58.702 37.037 2.23 0.00 31.21 3.02
1382 1777 4.177026 CAGCCACTTACTAGTAGCAGTTG 58.823 47.826 12.75 7.69 40.87 3.16
1384 1779 2.166664 GCAGCCACTTACTAGTAGCAGT 59.833 50.000 12.75 7.77 40.87 4.40
1391 1786 6.987386 AGTATATCAAGCAGCCACTTACTAG 58.013 40.000 0.00 0.00 0.00 2.57
1421 1821 6.922957 CAGAAGCACTAGACTAGATTCCAATC 59.077 42.308 16.55 5.23 35.64 2.67
1446 1846 6.145048 CCAATTCAGTTGAGAAAATTGTCAGC 59.855 38.462 0.00 0.00 40.37 4.26
1486 1896 2.095212 TCGTCCGAGAAGACATCACTTG 60.095 50.000 0.00 0.00 36.52 3.16
1502 1912 8.612619 TCTGAATTATTCTTGCTAAAATCGTCC 58.387 33.333 6.50 0.00 0.00 4.79
1781 2221 7.820648 AGCTCAAAGTAAATGTCACAATAAGG 58.179 34.615 0.00 0.00 0.00 2.69
1852 2292 4.727507 TTTGCTTGCTTGGTAGAACAAA 57.272 36.364 0.00 0.00 0.00 2.83
1912 2369 4.887071 AGAAACAACAATGCACTCACCTTA 59.113 37.500 0.00 0.00 0.00 2.69
1958 2415 6.725364 AGAGGAACATATTGGTGAATCACTT 58.275 36.000 13.53 0.00 34.40 3.16
2035 2516 4.200874 ACTTCGTCGTCATCTCCTATTCT 58.799 43.478 0.00 0.00 0.00 2.40
2057 2538 6.316140 GGCATGTGTTACTTGTCAGATCAATA 59.684 38.462 0.00 0.00 29.50 1.90
2080 2562 1.604604 TAAAAGTGCACTGACCTGGC 58.395 50.000 22.49 0.00 0.00 4.85
2105 2587 8.510243 TGAAATACTGATACATGAATGCACTT 57.490 30.769 0.00 0.00 0.00 3.16
2125 2607 8.680903 CCAGAAAAGTATCTGCAATACTGAAAT 58.319 33.333 16.95 8.13 44.43 2.17
2127 2609 7.168219 ACCAGAAAAGTATCTGCAATACTGAA 58.832 34.615 16.95 0.00 44.43 3.02
2128 2610 6.711277 ACCAGAAAAGTATCTGCAATACTGA 58.289 36.000 16.95 0.00 44.43 3.41
2129 2611 6.992063 ACCAGAAAAGTATCTGCAATACTG 57.008 37.500 16.95 9.50 44.43 2.74
2130 2612 7.168219 TGAACCAGAAAAGTATCTGCAATACT 58.832 34.615 12.81 12.81 44.43 2.12
2131 2613 7.377766 TGAACCAGAAAAGTATCTGCAATAC 57.622 36.000 9.63 9.63 44.43 1.89
2133 2615 6.491403 ACTTGAACCAGAAAAGTATCTGCAAT 59.509 34.615 0.00 0.00 44.43 3.56
2134 2616 5.827797 ACTTGAACCAGAAAAGTATCTGCAA 59.172 36.000 0.00 0.00 44.43 4.08
2136 2618 5.948992 ACTTGAACCAGAAAAGTATCTGC 57.051 39.130 0.00 0.00 44.43 4.26
2137 2619 6.371825 GGGTACTTGAACCAGAAAAGTATCTG 59.628 42.308 5.36 0.00 45.19 2.90
2138 2620 6.272558 AGGGTACTTGAACCAGAAAAGTATCT 59.727 38.462 5.36 1.80 41.67 1.98
2139 2621 6.371825 CAGGGTACTTGAACCAGAAAAGTATC 59.628 42.308 0.00 0.00 41.67 2.24
2181 2663 6.669278 ACAAAATTTCCGCTTCTCTTCTTAC 58.331 36.000 0.00 0.00 0.00 2.34
2196 2678 5.982465 TGCTTACTTGCCAACAAAATTTC 57.018 34.783 0.00 0.00 34.74 2.17
2247 2741 4.256920 ACAAGACTACTTCATGCATGGAC 58.743 43.478 25.97 10.10 33.70 4.02
2258 2752 5.258456 TCGACTGACAAACAAGACTACTT 57.742 39.130 0.00 0.00 36.73 2.24
2304 2798 3.703001 ACCAGACCACCAACTAGATTG 57.297 47.619 0.00 0.00 38.12 2.67
2318 2812 2.421424 GGCTGATTCACATCAACCAGAC 59.579 50.000 0.00 0.00 43.02 3.51
2327 2821 4.322057 AAAGGGTTAGGCTGATTCACAT 57.678 40.909 0.00 0.00 0.00 3.21
2336 2830 1.619704 GGCCATGAAAAGGGTTAGGCT 60.620 52.381 0.00 0.00 40.40 4.58
2393 2891 8.069574 GCAAATCTTTTCGGAACAAAATCAAAT 58.930 29.630 0.00 0.00 0.00 2.32
2395 2893 6.018343 GGCAAATCTTTTCGGAACAAAATCAA 60.018 34.615 0.00 0.00 0.00 2.57
2396 2894 5.465056 GGCAAATCTTTTCGGAACAAAATCA 59.535 36.000 0.00 0.00 0.00 2.57
2397 2895 5.465056 TGGCAAATCTTTTCGGAACAAAATC 59.535 36.000 0.00 0.00 0.00 2.17
2398 2896 5.363939 TGGCAAATCTTTTCGGAACAAAAT 58.636 33.333 0.00 0.00 0.00 1.82
2400 2898 4.392921 TGGCAAATCTTTTCGGAACAAA 57.607 36.364 0.00 0.00 0.00 2.83
2411 2912 3.896888 TGTCACAGGAATTGGCAAATCTT 59.103 39.130 14.49 4.65 0.00 2.40
2413 2914 3.940209 TGTCACAGGAATTGGCAAATC 57.060 42.857 3.01 5.15 0.00 2.17
2427 2928 7.030768 CAGCAAATACATGATGAATTGTCACA 58.969 34.615 0.00 0.00 38.99 3.58
2440 2941 6.731164 TGCATACAAGATCAGCAAATACATG 58.269 36.000 0.00 0.00 31.42 3.21
2441 2942 6.947644 TGCATACAAGATCAGCAAATACAT 57.052 33.333 0.00 0.00 31.42 2.29
2442 2943 6.756299 TTGCATACAAGATCAGCAAATACA 57.244 33.333 0.00 0.00 41.65 2.29
2448 2949 4.761227 TCAACTTTGCATACAAGATCAGCA 59.239 37.500 3.66 0.00 37.04 4.41
2451 2952 7.415877 CCATGATCAACTTTGCATACAAGATCA 60.416 37.037 18.00 18.00 42.80 2.92
2452 2953 6.916387 CCATGATCAACTTTGCATACAAGATC 59.084 38.462 0.00 7.60 37.04 2.75
2453 2954 6.379133 ACCATGATCAACTTTGCATACAAGAT 59.621 34.615 0.00 0.00 37.04 2.40
2457 3200 4.380761 GCACCATGATCAACTTTGCATACA 60.381 41.667 0.00 0.00 0.00 2.29
2540 3283 2.486982 GCTTAGTCTGTACTGTGTCGGA 59.513 50.000 0.00 0.00 36.36 4.55
2541 3284 2.228103 TGCTTAGTCTGTACTGTGTCGG 59.772 50.000 0.00 0.00 36.36 4.79
2545 3288 5.630661 AGTACTGCTTAGTCTGTACTGTG 57.369 43.478 17.73 0.00 44.52 3.66
2616 3385 2.148768 CCGGAACAGAGGGTTGTTAAC 58.851 52.381 0.00 0.00 41.15 2.01
2624 3393 1.935327 GACGAGACCGGAACAGAGGG 61.935 65.000 9.46 0.00 40.78 4.30
2674 3446 3.535561 GATGGGTATATTGCGATCCAGG 58.464 50.000 0.00 0.00 0.00 4.45
2704 3481 2.205243 CTCTTTTGCCAGCCGCTTCC 62.205 60.000 0.00 0.00 38.78 3.46
2705 3482 1.211190 CTCTTTTGCCAGCCGCTTC 59.789 57.895 0.00 0.00 38.78 3.86
2706 3483 2.924105 GCTCTTTTGCCAGCCGCTT 61.924 57.895 0.00 0.00 38.78 4.68
2707 3484 3.368571 GCTCTTTTGCCAGCCGCT 61.369 61.111 0.00 0.00 38.78 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.