Multiple sequence alignment - TraesCS7A01G070400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G070400 chr7A 100.000 2427 0 0 1 2427 36307130 36309556 0.000000e+00 4482
1 TraesCS7A01G070400 chr7D 90.302 1093 64 18 329 1394 36447595 36448672 0.000000e+00 1393
2 TraesCS7A01G070400 chr7D 82.077 597 99 5 1824 2413 36450725 36451320 1.000000e-138 503
3 TraesCS7A01G070400 chr4A 87.647 1109 74 12 327 1394 688584221 688585307 0.000000e+00 1230
4 TraesCS7A01G070400 chr4A 95.706 326 13 1 1 326 94992365 94992689 7.690000e-145 523
5 TraesCS7A01G070400 chr4A 83.498 406 41 11 1398 1785 688585793 688586190 2.970000e-94 355
6 TraesCS7A01G070400 chr4A 83.173 416 41 12 1388 1785 688798846 688799250 1.070000e-93 353
7 TraesCS7A01G070400 chr4A 83.378 373 56 4 1825 2192 688612921 688613292 8.310000e-90 340
8 TraesCS7A01G070400 chr4A 82.834 367 58 5 1824 2187 688586194 688586558 8.370000e-85 324
9 TraesCS7A01G070400 chr4A 79.032 248 44 4 2186 2427 688590532 688590777 1.930000e-36 163
10 TraesCS7A01G070400 chr4A 81.347 193 31 5 1530 1719 688553724 688553914 4.180000e-33 152
11 TraesCS7A01G070400 chr4A 80.928 194 31 5 1530 1719 688536963 688537154 5.410000e-32 148
12 TraesCS7A01G070400 chr5A 95.399 326 13 2 1 326 573653644 573653321 3.580000e-143 518
13 TraesCS7A01G070400 chr5A 94.785 326 15 2 1 326 391987976 391988299 7.740000e-140 507
14 TraesCS7A01G070400 chr7B 95.092 326 15 1 1 326 726569496 726569172 1.660000e-141 512
15 TraesCS7A01G070400 chr7B 93.884 327 18 2 1 326 489815827 489815502 2.170000e-135 492
16 TraesCS7A01G070400 chr3A 94.785 326 16 1 1 326 24061135 24060811 7.740000e-140 507
17 TraesCS7A01G070400 chr1B 94.785 326 16 1 1 326 325448592 325448268 7.740000e-140 507
18 TraesCS7A01G070400 chr1A 94.785 326 15 2 1 326 570224660 570224337 7.740000e-140 507
19 TraesCS7A01G070400 chr1A 93.865 326 18 2 1 326 260787610 260787287 7.800000e-135 490


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G070400 chr7A 36307130 36309556 2426 False 4482 4482 100.00000 1 2427 1 chr7A.!!$F1 2426
1 TraesCS7A01G070400 chr7D 36447595 36451320 3725 False 948 1393 86.18950 329 2413 2 chr7D.!!$F1 2084
2 TraesCS7A01G070400 chr4A 688584221 688590777 6556 False 518 1230 83.25275 327 2427 4 chr4A.!!$F6 2100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.030369 GGTACGAGGCCTGACATACG 59.97 60.0 12.0 9.27 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 3836 0.037877 ACTGCTTTGCTCCTGATGCT 59.962 50.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.189568 AACTGCAGTTGAGCAACCA 57.810 47.368 30.66 1.68 45.13 3.67
24 25 1.696063 AACTGCAGTTGAGCAACCAT 58.304 45.000 30.66 2.58 45.13 3.55
25 26 0.956633 ACTGCAGTTGAGCAACCATG 59.043 50.000 15.25 4.34 45.13 3.66
26 27 0.242825 CTGCAGTTGAGCAACCATGG 59.757 55.000 11.19 11.19 45.13 3.66
27 28 1.080298 GCAGTTGAGCAACCATGGC 60.080 57.895 13.04 0.00 42.06 4.40
28 29 1.808531 GCAGTTGAGCAACCATGGCA 61.809 55.000 13.04 0.00 42.06 4.92
29 30 0.675083 CAGTTGAGCAACCATGGCAA 59.325 50.000 13.04 4.49 42.06 4.52
30 31 0.675633 AGTTGAGCAACCATGGCAAC 59.324 50.000 19.02 19.02 42.06 4.17
31 32 0.675633 GTTGAGCAACCATGGCAACT 59.324 50.000 19.25 11.63 36.73 3.16
32 33 0.675083 TTGAGCAACCATGGCAACTG 59.325 50.000 13.04 5.49 37.61 3.16
33 34 1.080298 GAGCAACCATGGCAACTGC 60.080 57.895 13.04 15.46 41.14 4.40
34 35 1.808531 GAGCAACCATGGCAACTGCA 61.809 55.000 23.11 0.00 44.36 4.41
35 36 1.373748 GCAACCATGGCAACTGCAG 60.374 57.895 13.04 13.48 44.36 4.41
36 37 1.808531 GCAACCATGGCAACTGCAGA 61.809 55.000 23.35 0.00 44.36 4.26
37 38 0.892755 CAACCATGGCAACTGCAGAT 59.107 50.000 23.35 5.41 44.36 2.90
38 39 2.093890 CAACCATGGCAACTGCAGATA 58.906 47.619 23.35 1.53 44.36 1.98
39 40 2.492881 CAACCATGGCAACTGCAGATAA 59.507 45.455 23.35 1.00 44.36 1.75
40 41 2.806434 ACCATGGCAACTGCAGATAAA 58.194 42.857 23.35 1.79 44.36 1.40
41 42 2.493278 ACCATGGCAACTGCAGATAAAC 59.507 45.455 23.35 6.97 44.36 2.01
42 43 2.478370 CCATGGCAACTGCAGATAAACG 60.478 50.000 23.35 0.00 44.36 3.60
43 44 2.177394 TGGCAACTGCAGATAAACGA 57.823 45.000 23.35 0.00 44.36 3.85
44 45 2.499197 TGGCAACTGCAGATAAACGAA 58.501 42.857 23.35 0.00 44.36 3.85
45 46 2.225491 TGGCAACTGCAGATAAACGAAC 59.775 45.455 23.35 1.07 44.36 3.95
46 47 2.225491 GGCAACTGCAGATAAACGAACA 59.775 45.455 23.35 0.00 44.36 3.18
47 48 3.119849 GGCAACTGCAGATAAACGAACAT 60.120 43.478 23.35 0.00 44.36 2.71
48 49 3.848019 GCAACTGCAGATAAACGAACATG 59.152 43.478 23.35 0.00 41.59 3.21
49 50 4.406069 CAACTGCAGATAAACGAACATGG 58.594 43.478 23.35 0.00 0.00 3.66
50 51 3.937814 ACTGCAGATAAACGAACATGGA 58.062 40.909 23.35 0.00 0.00 3.41
51 52 3.684788 ACTGCAGATAAACGAACATGGAC 59.315 43.478 23.35 0.00 0.00 4.02
52 53 2.670905 TGCAGATAAACGAACATGGACG 59.329 45.455 11.17 11.17 0.00 4.79
53 54 2.927477 GCAGATAAACGAACATGGACGA 59.073 45.455 17.79 0.00 0.00 4.20
54 55 3.000322 GCAGATAAACGAACATGGACGAG 60.000 47.826 17.79 0.00 0.00 4.18
55 56 3.551890 CAGATAAACGAACATGGACGAGG 59.448 47.826 17.79 0.00 0.00 4.63
56 57 2.373540 TAAACGAACATGGACGAGGG 57.626 50.000 17.79 0.00 0.00 4.30
57 58 0.395312 AAACGAACATGGACGAGGGT 59.605 50.000 17.79 0.00 0.00 4.34
58 59 0.037605 AACGAACATGGACGAGGGTC 60.038 55.000 17.79 0.00 42.66 4.46
59 60 0.898789 ACGAACATGGACGAGGGTCT 60.899 55.000 17.79 0.00 42.97 3.85
60 61 0.458543 CGAACATGGACGAGGGTCTG 60.459 60.000 7.81 0.00 42.97 3.51
61 62 0.108138 GAACATGGACGAGGGTCTGG 60.108 60.000 0.00 0.00 42.97 3.86
62 63 0.544357 AACATGGACGAGGGTCTGGA 60.544 55.000 0.00 0.00 42.97 3.86
63 64 1.258445 ACATGGACGAGGGTCTGGAC 61.258 60.000 0.00 0.00 42.97 4.02
74 75 2.559785 GTCTGGACCATGGCAACTG 58.440 57.895 13.04 6.56 37.61 3.16
75 76 1.303561 TCTGGACCATGGCAACTGC 60.304 57.895 13.04 0.00 41.14 4.40
76 77 2.672651 TGGACCATGGCAACTGCG 60.673 61.111 13.04 0.00 43.26 5.18
77 78 3.443045 GGACCATGGCAACTGCGG 61.443 66.667 13.04 0.00 43.26 5.69
78 79 3.443045 GACCATGGCAACTGCGGG 61.443 66.667 13.04 0.28 43.26 6.13
119 120 4.760047 CGTGCGGGACCAGAAGGG 62.760 72.222 0.00 0.00 44.81 3.95
128 129 2.901042 CCAGAAGGGTACGAGGCC 59.099 66.667 0.00 0.00 0.00 5.19
129 130 1.686110 CCAGAAGGGTACGAGGCCT 60.686 63.158 3.86 3.86 0.00 5.19
130 131 1.517832 CAGAAGGGTACGAGGCCTG 59.482 63.158 12.00 5.11 0.00 4.85
131 132 0.970937 CAGAAGGGTACGAGGCCTGA 60.971 60.000 12.00 0.00 0.00 3.86
132 133 0.971447 AGAAGGGTACGAGGCCTGAC 60.971 60.000 12.00 5.04 0.00 3.51
133 134 1.229082 AAGGGTACGAGGCCTGACA 60.229 57.895 12.00 0.00 0.00 3.58
134 135 0.617820 AAGGGTACGAGGCCTGACAT 60.618 55.000 12.00 0.00 0.00 3.06
135 136 0.260816 AGGGTACGAGGCCTGACATA 59.739 55.000 12.00 0.00 0.00 2.29
136 137 0.388294 GGGTACGAGGCCTGACATAC 59.612 60.000 12.00 6.88 0.00 2.39
137 138 0.030369 GGTACGAGGCCTGACATACG 59.970 60.000 12.00 9.27 0.00 3.06
138 139 0.030369 GTACGAGGCCTGACATACGG 59.970 60.000 12.00 0.00 0.00 4.02
144 145 2.577059 CCTGACATACGGGCGTGT 59.423 61.111 0.00 0.00 38.29 4.49
145 146 1.809619 CCTGACATACGGGCGTGTG 60.810 63.158 0.00 0.00 41.90 3.82
146 147 1.809619 CTGACATACGGGCGTGTGG 60.810 63.158 0.00 0.00 40.75 4.17
147 148 2.510691 GACATACGGGCGTGTGGG 60.511 66.667 0.00 0.00 40.75 4.61
148 149 4.770874 ACATACGGGCGTGTGGGC 62.771 66.667 0.00 0.00 40.75 5.36
154 155 4.337060 GGGCGTGTGGGCGTTTTC 62.337 66.667 0.00 0.00 43.46 2.29
155 156 3.587933 GGCGTGTGGGCGTTTTCA 61.588 61.111 0.00 0.00 0.00 2.69
156 157 2.409651 GCGTGTGGGCGTTTTCAA 59.590 55.556 0.00 0.00 0.00 2.69
157 158 1.007849 GCGTGTGGGCGTTTTCAAT 60.008 52.632 0.00 0.00 0.00 2.57
158 159 0.596341 GCGTGTGGGCGTTTTCAATT 60.596 50.000 0.00 0.00 0.00 2.32
159 160 1.846541 CGTGTGGGCGTTTTCAATTT 58.153 45.000 0.00 0.00 0.00 1.82
160 161 1.784283 CGTGTGGGCGTTTTCAATTTC 59.216 47.619 0.00 0.00 0.00 2.17
161 162 1.784283 GTGTGGGCGTTTTCAATTTCG 59.216 47.619 0.00 0.00 0.00 3.46
162 163 0.781787 GTGGGCGTTTTCAATTTCGC 59.218 50.000 0.00 0.00 46.42 4.70
165 166 3.187211 GCGTTTTCAATTTCGCCCA 57.813 47.368 0.00 0.00 42.33 5.36
166 167 0.781787 GCGTTTTCAATTTCGCCCAC 59.218 50.000 0.00 0.00 42.33 4.61
167 168 1.866063 GCGTTTTCAATTTCGCCCACA 60.866 47.619 0.00 0.00 42.33 4.17
168 169 2.671596 CGTTTTCAATTTCGCCCACAT 58.328 42.857 0.00 0.00 0.00 3.21
169 170 2.408032 CGTTTTCAATTTCGCCCACATG 59.592 45.455 0.00 0.00 0.00 3.21
170 171 3.389221 GTTTTCAATTTCGCCCACATGT 58.611 40.909 0.00 0.00 0.00 3.21
171 172 4.551388 GTTTTCAATTTCGCCCACATGTA 58.449 39.130 0.00 0.00 0.00 2.29
172 173 3.840890 TTCAATTTCGCCCACATGTAC 57.159 42.857 0.00 0.00 0.00 2.90
173 174 1.735018 TCAATTTCGCCCACATGTACG 59.265 47.619 0.00 3.17 0.00 3.67
174 175 0.450184 AATTTCGCCCACATGTACGC 59.550 50.000 0.00 1.71 0.00 4.42
175 176 1.701545 ATTTCGCCCACATGTACGCG 61.702 55.000 25.05 25.05 45.76 6.01
176 177 3.576932 TTCGCCCACATGTACGCGT 62.577 57.895 27.82 19.17 44.73 6.01
177 178 3.848830 CGCCCACATGTACGCGTG 61.849 66.667 24.59 7.57 39.78 5.34
178 179 2.740826 GCCCACATGTACGCGTGT 60.741 61.111 24.59 8.36 44.99 4.49
183 184 3.401577 ACATGTACGCGTGTGAGAG 57.598 52.632 24.59 9.28 42.72 3.20
184 185 0.879090 ACATGTACGCGTGTGAGAGA 59.121 50.000 24.59 0.00 42.72 3.10
185 186 1.135660 ACATGTACGCGTGTGAGAGAG 60.136 52.381 24.59 5.94 42.72 3.20
186 187 1.135660 CATGTACGCGTGTGAGAGAGT 60.136 52.381 24.59 0.00 0.00 3.24
187 188 0.949397 TGTACGCGTGTGAGAGAGTT 59.051 50.000 24.59 0.00 0.00 3.01
188 189 1.069432 TGTACGCGTGTGAGAGAGTTC 60.069 52.381 24.59 0.00 0.00 3.01
189 190 1.069432 GTACGCGTGTGAGAGAGTTCA 60.069 52.381 24.59 0.00 0.00 3.18
190 191 0.039978 ACGCGTGTGAGAGAGTTCAG 60.040 55.000 12.93 0.00 0.00 3.02
191 192 0.730834 CGCGTGTGAGAGAGTTCAGG 60.731 60.000 0.00 0.00 0.00 3.86
192 193 0.598562 GCGTGTGAGAGAGTTCAGGA 59.401 55.000 0.00 0.00 0.00 3.86
193 194 1.402194 GCGTGTGAGAGAGTTCAGGAG 60.402 57.143 0.00 0.00 0.00 3.69
194 195 1.201181 CGTGTGAGAGAGTTCAGGAGG 59.799 57.143 0.00 0.00 0.00 4.30
195 196 1.548269 GTGTGAGAGAGTTCAGGAGGG 59.452 57.143 0.00 0.00 0.00 4.30
196 197 1.429299 TGTGAGAGAGTTCAGGAGGGA 59.571 52.381 0.00 0.00 0.00 4.20
197 198 2.158310 TGTGAGAGAGTTCAGGAGGGAA 60.158 50.000 0.00 0.00 0.00 3.97
198 199 2.900546 GTGAGAGAGTTCAGGAGGGAAA 59.099 50.000 0.00 0.00 0.00 3.13
199 200 3.325135 GTGAGAGAGTTCAGGAGGGAAAA 59.675 47.826 0.00 0.00 0.00 2.29
200 201 3.973973 TGAGAGAGTTCAGGAGGGAAAAA 59.026 43.478 0.00 0.00 0.00 1.94
220 221 4.732285 AAAAGACGTGTGTGAGCATTAG 57.268 40.909 0.00 0.00 0.00 1.73
221 222 3.386768 AAGACGTGTGTGAGCATTAGT 57.613 42.857 0.00 0.00 0.00 2.24
222 223 3.386768 AGACGTGTGTGAGCATTAGTT 57.613 42.857 0.00 0.00 0.00 2.24
223 224 3.059884 AGACGTGTGTGAGCATTAGTTG 58.940 45.455 0.00 0.00 0.00 3.16
224 225 2.800544 GACGTGTGTGAGCATTAGTTGT 59.199 45.455 0.00 0.00 0.00 3.32
225 226 3.202906 ACGTGTGTGAGCATTAGTTGTT 58.797 40.909 0.00 0.00 0.00 2.83
226 227 3.625764 ACGTGTGTGAGCATTAGTTGTTT 59.374 39.130 0.00 0.00 0.00 2.83
227 228 4.095782 ACGTGTGTGAGCATTAGTTGTTTT 59.904 37.500 0.00 0.00 0.00 2.43
228 229 4.437495 CGTGTGTGAGCATTAGTTGTTTTG 59.563 41.667 0.00 0.00 0.00 2.44
229 230 5.577835 GTGTGTGAGCATTAGTTGTTTTGA 58.422 37.500 0.00 0.00 0.00 2.69
230 231 5.455525 GTGTGTGAGCATTAGTTGTTTTGAC 59.544 40.000 0.00 0.00 0.00 3.18
231 232 4.976116 GTGTGAGCATTAGTTGTTTTGACC 59.024 41.667 0.00 0.00 0.00 4.02
232 233 4.642437 TGTGAGCATTAGTTGTTTTGACCA 59.358 37.500 0.00 0.00 0.00 4.02
233 234 4.976116 GTGAGCATTAGTTGTTTTGACCAC 59.024 41.667 0.00 0.00 0.00 4.16
234 235 4.642437 TGAGCATTAGTTGTTTTGACCACA 59.358 37.500 0.00 0.00 0.00 4.17
235 236 4.932146 AGCATTAGTTGTTTTGACCACAC 58.068 39.130 0.00 0.00 0.00 3.82
236 237 3.728718 GCATTAGTTGTTTTGACCACACG 59.271 43.478 0.00 0.00 0.00 4.49
237 238 4.732355 GCATTAGTTGTTTTGACCACACGT 60.732 41.667 0.00 0.00 0.00 4.49
238 239 5.504337 GCATTAGTTGTTTTGACCACACGTA 60.504 40.000 0.00 0.00 0.00 3.57
239 240 5.721876 TTAGTTGTTTTGACCACACGTAG 57.278 39.130 0.00 0.00 0.00 3.51
240 241 2.940410 AGTTGTTTTGACCACACGTAGG 59.060 45.455 4.77 4.77 0.00 3.18
241 242 2.937799 GTTGTTTTGACCACACGTAGGA 59.062 45.455 12.70 0.00 0.00 2.94
242 243 2.828877 TGTTTTGACCACACGTAGGAG 58.171 47.619 12.70 0.00 0.00 3.69
243 244 2.168936 TGTTTTGACCACACGTAGGAGT 59.831 45.455 12.70 0.00 0.00 3.85
244 245 2.519377 TTTGACCACACGTAGGAGTG 57.481 50.000 12.70 6.08 46.83 3.51
250 251 3.377656 CACGTAGGAGTGTGGGCT 58.622 61.111 0.00 0.00 37.35 5.19
251 252 1.079819 CACGTAGGAGTGTGGGCTG 60.080 63.158 0.00 0.00 37.35 4.85
252 253 2.283529 ACGTAGGAGTGTGGGCTGG 61.284 63.158 0.00 0.00 0.00 4.85
253 254 2.283529 CGTAGGAGTGTGGGCTGGT 61.284 63.158 0.00 0.00 0.00 4.00
254 255 1.827399 CGTAGGAGTGTGGGCTGGTT 61.827 60.000 0.00 0.00 0.00 3.67
255 256 0.321653 GTAGGAGTGTGGGCTGGTTG 60.322 60.000 0.00 0.00 0.00 3.77
256 257 2.124507 TAGGAGTGTGGGCTGGTTGC 62.125 60.000 0.00 0.00 41.94 4.17
257 258 2.113986 GAGTGTGGGCTGGTTGCT 59.886 61.111 0.00 0.00 42.39 3.91
258 259 2.203394 AGTGTGGGCTGGTTGCTG 60.203 61.111 0.00 0.00 42.39 4.41
259 260 2.519302 GTGTGGGCTGGTTGCTGT 60.519 61.111 0.00 0.00 42.39 4.40
260 261 2.203337 TGTGGGCTGGTTGCTGTC 60.203 61.111 0.00 0.00 42.39 3.51
261 262 2.985847 GTGGGCTGGTTGCTGTCC 60.986 66.667 0.00 0.00 42.39 4.02
262 263 3.497115 TGGGCTGGTTGCTGTCCA 61.497 61.111 0.00 0.00 42.39 4.02
263 264 2.036256 GGGCTGGTTGCTGTCCAT 59.964 61.111 0.00 0.00 42.39 3.41
264 265 2.345760 GGGCTGGTTGCTGTCCATG 61.346 63.158 0.00 0.00 42.39 3.66
265 266 2.570181 GCTGGTTGCTGTCCATGC 59.430 61.111 0.00 0.00 38.95 4.06
266 267 2.998279 GCTGGTTGCTGTCCATGCC 61.998 63.158 0.00 0.00 38.95 4.40
267 268 1.604308 CTGGTTGCTGTCCATGCCA 60.604 57.895 0.00 0.00 34.26 4.92
268 269 1.870055 CTGGTTGCTGTCCATGCCAC 61.870 60.000 0.00 0.00 34.26 5.01
269 270 1.902918 GGTTGCTGTCCATGCCACA 60.903 57.895 0.00 0.00 0.00 4.17
270 271 1.286880 GTTGCTGTCCATGCCACAC 59.713 57.895 0.00 0.00 0.00 3.82
271 272 2.260154 TTGCTGTCCATGCCACACG 61.260 57.895 0.00 0.00 0.00 4.49
272 273 2.358615 GCTGTCCATGCCACACGA 60.359 61.111 0.00 0.00 0.00 4.35
273 274 2.393768 GCTGTCCATGCCACACGAG 61.394 63.158 0.00 0.00 0.00 4.18
274 275 1.742880 CTGTCCATGCCACACGAGG 60.743 63.158 0.00 0.00 0.00 4.63
286 287 4.539083 ACGAGGCGTGTGGCACAA 62.539 61.111 23.90 3.54 46.16 3.33
287 288 4.012895 CGAGGCGTGTGGCACAAC 62.013 66.667 23.90 17.20 44.16 3.32
288 289 2.591715 GAGGCGTGTGGCACAACT 60.592 61.111 23.90 19.95 44.16 3.16
289 290 1.301401 GAGGCGTGTGGCACAACTA 60.301 57.895 23.90 0.00 44.16 2.24
290 291 0.673644 GAGGCGTGTGGCACAACTAT 60.674 55.000 23.90 9.17 44.16 2.12
291 292 0.673644 AGGCGTGTGGCACAACTATC 60.674 55.000 23.90 8.57 44.16 2.08
292 293 1.644786 GGCGTGTGGCACAACTATCC 61.645 60.000 23.90 14.45 44.16 2.59
293 294 1.966493 GCGTGTGGCACAACTATCCG 61.966 60.000 23.90 20.50 44.16 4.18
294 295 0.389296 CGTGTGGCACAACTATCCGA 60.389 55.000 23.90 0.00 44.16 4.55
295 296 1.739035 CGTGTGGCACAACTATCCGAT 60.739 52.381 23.90 0.00 44.16 4.18
296 297 2.480587 CGTGTGGCACAACTATCCGATA 60.481 50.000 23.90 0.00 44.16 2.92
297 298 2.864343 GTGTGGCACAACTATCCGATAC 59.136 50.000 23.90 0.89 44.16 2.24
298 299 2.498078 TGTGGCACAACTATCCGATACA 59.502 45.455 19.74 0.00 44.16 2.29
299 300 2.864343 GTGGCACAACTATCCGATACAC 59.136 50.000 13.86 0.00 44.16 2.90
300 301 2.159014 TGGCACAACTATCCGATACACC 60.159 50.000 0.00 0.00 31.92 4.16
301 302 2.159014 GGCACAACTATCCGATACACCA 60.159 50.000 0.00 0.00 0.00 4.17
302 303 2.864343 GCACAACTATCCGATACACCAC 59.136 50.000 0.00 0.00 0.00 4.16
303 304 3.677700 GCACAACTATCCGATACACCACA 60.678 47.826 0.00 0.00 0.00 4.17
304 305 3.863424 CACAACTATCCGATACACCACAC 59.137 47.826 0.00 0.00 0.00 3.82
305 306 3.113322 CAACTATCCGATACACCACACG 58.887 50.000 0.00 0.00 0.00 4.49
306 307 2.372264 ACTATCCGATACACCACACGT 58.628 47.619 0.00 0.00 0.00 4.49
319 320 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
320 321 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
321 322 1.079405 ACGTGTGGCAGTTATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
322 323 1.216977 CGTGTGGCAGTTATCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
323 324 1.082117 CGTGTGGCAGTTATCGGGAC 61.082 60.000 0.00 0.00 0.00 4.46
324 325 0.743345 GTGTGGCAGTTATCGGGACC 60.743 60.000 0.00 0.00 0.00 4.46
325 326 1.153229 GTGGCAGTTATCGGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
353 354 9.803315 GGATTTAAAGTTGAGGATTCATTTACC 57.197 33.333 0.00 0.00 32.27 2.85
370 371 8.985315 TCATTTACCTCGGTCTCTATAAAGTA 57.015 34.615 0.00 0.00 0.00 2.24
398 399 6.017357 GGTTTATTTCAGACTTTTCTCGTGGT 60.017 38.462 0.00 0.00 0.00 4.16
402 403 0.600255 AGACTTTTCTCGTGGTGGCG 60.600 55.000 0.00 0.00 0.00 5.69
436 437 3.681897 GGCTCATCTAACACAGTGAACAG 59.318 47.826 7.81 1.11 0.00 3.16
444 445 1.419762 ACACAGTGAACAGGGCATACA 59.580 47.619 7.81 0.00 0.00 2.29
504 507 0.937441 AGTCATAGAGGAGCCCCTGA 59.063 55.000 0.00 0.00 44.53 3.86
531 534 4.492570 CGAACTTGTAATCGACAGCAATCC 60.493 45.833 0.00 0.00 41.43 3.01
564 567 5.958380 TCTTTGTCCCTAGAAATCTAGAGCA 59.042 40.000 17.12 10.36 46.80 4.26
606 633 4.400251 TGAGTTCTGTGGGTTAGGTATACG 59.600 45.833 0.00 0.00 0.00 3.06
668 695 4.341783 GGCACACCTGCTCTGGCT 62.342 66.667 0.00 0.00 43.66 4.75
768 795 4.657824 CACGACGCCGACCAACCT 62.658 66.667 0.00 0.00 39.50 3.50
769 796 2.985282 ACGACGCCGACCAACCTA 60.985 61.111 0.00 0.00 39.50 3.08
770 797 2.345760 ACGACGCCGACCAACCTAT 61.346 57.895 0.00 0.00 39.50 2.57
771 798 1.031571 ACGACGCCGACCAACCTATA 61.032 55.000 0.00 0.00 39.50 1.31
848 875 1.993370 GAACGATCTTGACCAACTCCG 59.007 52.381 0.00 0.00 0.00 4.63
850 877 0.389817 CGATCTTGACCAACTCCGCA 60.390 55.000 0.00 0.00 0.00 5.69
898 925 2.438614 CTCTCCGCCTCTCCGACA 60.439 66.667 0.00 0.00 0.00 4.35
989 1032 7.254353 GTATATATACATACAGAGCACGAGCGA 60.254 40.741 16.50 0.00 37.30 4.93
1017 1060 2.230992 CGGAAACCAAGCATCCATCAAA 59.769 45.455 0.00 0.00 32.58 2.69
1097 1140 2.238395 GGACAGGATCTTGGCTTTCTCT 59.762 50.000 10.93 0.00 0.00 3.10
1197 1240 3.649277 GAGCAGCCGGAGAAAGCGA 62.649 63.158 5.05 0.00 0.00 4.93
1203 1246 2.506438 CGGAGAAAGCGACGGACC 60.506 66.667 0.00 0.00 0.00 4.46
1223 1266 2.906458 CAGCGGCAGGAGGAGAAT 59.094 61.111 1.45 0.00 0.00 2.40
1314 1357 4.713814 ACTGCTTTGAGTCTATCATCTCCA 59.286 41.667 0.00 0.00 37.89 3.86
1316 1359 5.851720 TGCTTTGAGTCTATCATCTCCATC 58.148 41.667 0.00 0.00 37.89 3.51
1330 1373 0.758310 TCCATCTGAGCGGCTGATCT 60.758 55.000 7.50 0.00 33.45 2.75
1362 1405 2.223735 CGGGATAGTTAGCGAGCTTCAA 60.224 50.000 1.86 0.00 0.00 2.69
1363 1406 3.385577 GGGATAGTTAGCGAGCTTCAAG 58.614 50.000 1.86 0.00 0.00 3.02
1380 1425 5.985530 GCTTCAAGTCTATTTTTGCTGGTTT 59.014 36.000 0.00 0.00 0.00 3.27
1411 3344 5.026121 AGTATGTTCAGAGGAGGTGAATGA 58.974 41.667 0.00 0.00 36.35 2.57
1430 3363 8.006590 GTGAATGAATTACTGATCATACGCTTC 58.993 37.037 0.00 0.00 35.29 3.86
1436 3369 3.388308 ACTGATCATACGCTTCATGCTC 58.612 45.455 0.00 0.00 40.11 4.26
1444 3377 6.048509 TCATACGCTTCATGCTCATCTTTTA 58.951 36.000 0.00 0.00 40.11 1.52
1456 3389 5.295292 TGCTCATCTTTTATGCTGCTAACTC 59.705 40.000 0.00 0.00 0.00 3.01
1523 3475 2.153401 CCCCCAACTCCCTGTGTGA 61.153 63.158 0.00 0.00 0.00 3.58
1524 3476 1.500783 CCCCCAACTCCCTGTGTGAT 61.501 60.000 0.00 0.00 0.00 3.06
1526 3478 1.065418 CCCCAACTCCCTGTGTGATAC 60.065 57.143 0.00 0.00 0.00 2.24
1528 3480 2.305927 CCCAACTCCCTGTGTGATACTT 59.694 50.000 0.00 0.00 0.00 2.24
1550 3502 4.746836 AAAATGTTAAAACACACGCACG 57.253 36.364 0.00 0.00 42.51 5.34
1573 3525 6.422400 ACGTTCTTCTTTTTGCAGAAAAACAA 59.578 30.769 12.67 1.69 34.59 2.83
1581 3533 3.367992 TGCAGAAAAACAACGATGCAT 57.632 38.095 0.00 0.00 38.64 3.96
1598 3550 4.904895 TGCATTGATCAATGGGGAAAAA 57.095 36.364 37.09 4.81 46.14 1.94
1615 3567 6.295859 GGGGAAAAAGCCACAGAAAGATAAAT 60.296 38.462 0.00 0.00 0.00 1.40
1661 3613 4.892934 TCAGCCAACCTTAACTTTTGTGAT 59.107 37.500 0.00 0.00 0.00 3.06
1725 3677 7.663081 ACATATAGCAAGGTCCAATAGTTCATG 59.337 37.037 0.00 0.00 0.00 3.07
1729 3681 4.034048 GCAAGGTCCAATAGTTCATGTACG 59.966 45.833 0.00 0.00 0.00 3.67
1767 3719 7.421530 TCTTACTTCTGTTTGACATGTTAGC 57.578 36.000 0.00 0.00 0.00 3.09
1777 3729 5.363979 TTGACATGTTAGCGTGCAAATAA 57.636 34.783 0.00 0.00 35.09 1.40
1778 3730 5.559427 TGACATGTTAGCGTGCAAATAAT 57.441 34.783 0.00 0.00 35.09 1.28
1785 3737 7.490962 TGTTAGCGTGCAAATAATTAGCTAT 57.509 32.000 0.00 0.00 35.93 2.97
1786 3738 7.925993 TGTTAGCGTGCAAATAATTAGCTATT 58.074 30.769 0.00 0.00 35.93 1.73
1788 3740 9.530129 GTTAGCGTGCAAATAATTAGCTATTAG 57.470 33.333 0.00 0.00 35.93 1.73
1789 3741 7.730364 AGCGTGCAAATAATTAGCTATTAGT 57.270 32.000 0.00 0.00 32.40 2.24
1790 3742 7.797819 AGCGTGCAAATAATTAGCTATTAGTC 58.202 34.615 0.00 0.00 32.40 2.59
1791 3743 7.657761 AGCGTGCAAATAATTAGCTATTAGTCT 59.342 33.333 0.00 0.00 32.40 3.24
1792 3744 8.922676 GCGTGCAAATAATTAGCTATTAGTCTA 58.077 33.333 0.00 0.00 32.40 2.59
1804 3756 9.976511 TTAGCTATTAGTCTATTACGCAATGTT 57.023 29.630 0.00 0.00 0.00 2.71
1805 3757 8.522178 AGCTATTAGTCTATTACGCAATGTTC 57.478 34.615 0.00 0.00 0.00 3.18
1806 3758 8.141909 AGCTATTAGTCTATTACGCAATGTTCA 58.858 33.333 0.00 0.00 0.00 3.18
1807 3759 8.761497 GCTATTAGTCTATTACGCAATGTTCAA 58.239 33.333 0.00 0.00 0.00 2.69
1842 3794 0.884704 GCAACCAGAGGAAAGCGTCA 60.885 55.000 0.00 0.00 0.00 4.35
1853 3805 2.537625 GGAAAGCGTCAAGAGATGATCG 59.462 50.000 0.00 0.00 40.97 3.69
1862 3814 3.519510 TCAAGAGATGATCGAAAGGGGTT 59.480 43.478 0.00 0.00 31.50 4.11
1870 3822 3.505680 TGATCGAAAGGGGTTCACAAATG 59.494 43.478 0.00 0.00 35.83 2.32
1930 3882 1.899814 TCGGTGAATTCAGTAGCCTGT 59.100 47.619 8.80 0.00 39.82 4.00
1931 3883 2.002586 CGGTGAATTCAGTAGCCTGTG 58.997 52.381 8.80 0.00 39.82 3.66
1934 3886 4.072131 GGTGAATTCAGTAGCCTGTGAAA 58.928 43.478 8.80 0.00 39.82 2.69
1938 3891 7.254932 GGTGAATTCAGTAGCCTGTGAAATATC 60.255 40.741 8.80 0.00 39.82 1.63
1943 3896 5.130975 TCAGTAGCCTGTGAAATATCCACAT 59.869 40.000 10.22 1.51 42.79 3.21
1947 3900 6.252599 AGCCTGTGAAATATCCACATTCTA 57.747 37.500 10.22 0.00 42.79 2.10
1969 3922 3.683365 ACAAAATCCAGGAAACATGGC 57.317 42.857 0.00 0.00 37.76 4.40
1992 3945 6.307155 GCACATGTTAGTAATGAGTTGTCAC 58.693 40.000 0.00 0.00 34.75 3.67
2000 3953 2.479566 ATGAGTTGTCACCAGCGAAT 57.520 45.000 0.00 0.00 34.75 3.34
2010 3963 2.182496 CCAGCGAATGATGGCACAA 58.818 52.632 0.00 0.00 46.14 3.33
2012 3965 3.470393 CCAGCGAATGATGGCACAACC 62.470 57.143 0.00 0.00 46.14 3.77
2023 3976 3.731652 TGGCACAACCTGAAAGATTTG 57.268 42.857 0.00 0.00 40.22 2.32
2024 3977 2.224018 TGGCACAACCTGAAAGATTTGC 60.224 45.455 0.00 0.00 40.22 3.68
2028 3981 1.276138 CAACCTGAAAGATTTGCCCCC 59.724 52.381 0.00 0.00 34.07 5.40
2033 3986 1.340017 TGAAAGATTTGCCCCCTCTCG 60.340 52.381 0.00 0.00 0.00 4.04
2045 3998 4.735132 CTCTCGCGCGGGGTGAAA 62.735 66.667 31.95 9.18 34.08 2.69
2052 4005 1.657556 CGCGGGGTGAAATGTTGTT 59.342 52.632 0.00 0.00 0.00 2.83
2062 4015 7.359933 CGGGGTGAAATGTTGTTTATTGATTTG 60.360 37.037 0.00 0.00 0.00 2.32
2063 4016 7.443879 GGGGTGAAATGTTGTTTATTGATTTGT 59.556 33.333 0.00 0.00 0.00 2.83
2064 4017 8.835439 GGGTGAAATGTTGTTTATTGATTTGTT 58.165 29.630 0.00 0.00 0.00 2.83
2082 4036 8.140628 TGATTTGTTTTCTGGAAATGAAATCGA 58.859 29.630 20.42 0.00 38.90 3.59
2085 4039 5.534654 TGTTTTCTGGAAATGAAATCGAGGT 59.465 36.000 0.00 0.00 34.04 3.85
2092 4046 5.534654 TGGAAATGAAATCGAGGTGAAAAGT 59.465 36.000 0.00 0.00 0.00 2.66
2094 4048 6.582672 GGAAATGAAATCGAGGTGAAAAGTTC 59.417 38.462 0.00 0.00 0.00 3.01
2095 4049 4.725556 TGAAATCGAGGTGAAAAGTTCG 57.274 40.909 0.00 0.00 34.56 3.95
2102 4056 4.573201 TCGAGGTGAAAAGTTCGTCAATTT 59.427 37.500 0.00 0.00 34.83 1.82
2108 4062 7.763985 AGGTGAAAAGTTCGTCAATTTGAAAAT 59.236 29.630 0.00 0.00 0.00 1.82
2130 4084 6.839124 ATAAGAGTTGAATGGCAATTGTGA 57.161 33.333 7.40 0.00 39.03 3.58
2146 4100 6.690530 CAATTGTGATTGACATTTACCCACT 58.309 36.000 0.00 0.00 44.37 4.00
2148 4102 5.703978 TGTGATTGACATTTACCCACTTG 57.296 39.130 0.00 0.00 0.00 3.16
2151 4105 2.969821 TGACATTTACCCACTTGGCT 57.030 45.000 0.00 0.00 37.83 4.75
2153 4107 3.950397 TGACATTTACCCACTTGGCTAG 58.050 45.455 0.00 0.00 37.83 3.42
2165 4119 4.878397 CCACTTGGCTAGTTCCATCTTAAG 59.122 45.833 0.00 0.00 35.77 1.85
2168 4122 3.115390 TGGCTAGTTCCATCTTAAGGCT 58.885 45.455 1.85 0.00 0.00 4.58
2171 4125 5.163301 TGGCTAGTTCCATCTTAAGGCTAAG 60.163 44.000 1.85 0.00 36.59 2.18
2183 8112 3.595190 AAGGCTAAGTTGACCAACCTT 57.405 42.857 9.07 3.13 42.06 3.50
2184 8113 3.595190 AGGCTAAGTTGACCAACCTTT 57.405 42.857 9.07 1.77 42.06 3.11
2216 8145 5.726980 AAATTCTTTGGCAGCATACTTCA 57.273 34.783 0.00 0.00 0.00 3.02
2233 8162 8.840321 GCATACTTCACCATCTGTATGTTATTT 58.160 33.333 11.80 0.00 42.23 1.40
2250 8179 8.814038 ATGTTATTTTCTCTAAGCAATGAGGT 57.186 30.769 0.00 0.00 0.00 3.85
2256 8185 2.941720 CTCTAAGCAATGAGGTGGCTTC 59.058 50.000 0.90 0.00 43.97 3.86
2259 8188 3.439857 AAGCAATGAGGTGGCTTCTAA 57.560 42.857 0.00 0.00 43.97 2.10
2263 8192 5.509498 AGCAATGAGGTGGCTTCTAATTTA 58.491 37.500 0.00 0.00 33.21 1.40
2267 8196 7.522236 GCAATGAGGTGGCTTCTAATTTATACC 60.522 40.741 0.00 0.00 0.00 2.73
2272 8201 4.451435 GTGGCTTCTAATTTATACCGAGCC 59.549 45.833 4.20 4.20 38.99 4.70
2278 8207 6.474140 TCTAATTTATACCGAGCCAGTGAA 57.526 37.500 0.00 0.00 0.00 3.18
2279 8208 6.278363 TCTAATTTATACCGAGCCAGTGAAC 58.722 40.000 0.00 0.00 0.00 3.18
2280 8209 4.755266 ATTTATACCGAGCCAGTGAACT 57.245 40.909 0.00 0.00 0.00 3.01
2285 8214 5.864418 ATACCGAGCCAGTGAACTAATAA 57.136 39.130 0.00 0.00 0.00 1.40
2289 8219 5.944007 ACCGAGCCAGTGAACTAATAAATTT 59.056 36.000 0.00 0.00 0.00 1.82
2308 8238 4.497473 TTTTGTTATCAGAAGGCCAACG 57.503 40.909 5.01 0.00 0.00 4.10
2309 8239 2.107950 TGTTATCAGAAGGCCAACGG 57.892 50.000 5.01 0.00 0.00 4.44
2313 8243 0.321653 ATCAGAAGGCCAACGGTGAC 60.322 55.000 5.01 0.00 0.00 3.67
2325 8255 4.544001 GGTGACGGTTGTGGTTCA 57.456 55.556 0.00 0.00 0.00 3.18
2326 8256 2.317230 GGTGACGGTTGTGGTTCAG 58.683 57.895 0.00 0.00 0.00 3.02
2328 8258 0.935196 GTGACGGTTGTGGTTCAGTC 59.065 55.000 0.00 0.00 0.00 3.51
2331 8261 0.179056 ACGGTTGTGGTTCAGTCCAG 60.179 55.000 0.00 0.00 38.23 3.86
2345 8275 4.651778 TCAGTCCAGACCAAACCAATTAG 58.348 43.478 0.00 0.00 0.00 1.73
2347 8277 4.827284 CAGTCCAGACCAAACCAATTAGTT 59.173 41.667 0.00 0.00 0.00 2.24
2349 8279 4.069304 TCCAGACCAAACCAATTAGTTCG 58.931 43.478 0.00 0.00 0.00 3.95
2354 8284 1.807742 CAAACCAATTAGTTCGGCCGA 59.192 47.619 27.28 27.28 0.00 5.54
2355 8285 1.734163 AACCAATTAGTTCGGCCGAG 58.266 50.000 29.20 16.43 0.00 4.63
2395 8330 6.823689 AGTATGCAACGAGATTGGAGTTTATT 59.176 34.615 0.00 0.00 42.55 1.40
2398 8333 5.240623 TGCAACGAGATTGGAGTTTATTTGT 59.759 36.000 0.00 0.00 38.88 2.83
2399 8334 5.569059 GCAACGAGATTGGAGTTTATTTGTG 59.431 40.000 0.00 0.00 38.88 3.33
2407 8342 3.181434 TGGAGTTTATTTGTGGAGCAGGT 60.181 43.478 0.00 0.00 0.00 4.00
2409 8344 4.072131 GAGTTTATTTGTGGAGCAGGTGA 58.928 43.478 0.00 0.00 0.00 4.02
2410 8345 4.666512 AGTTTATTTGTGGAGCAGGTGAT 58.333 39.130 0.00 0.00 0.00 3.06
2413 8348 6.891908 AGTTTATTTGTGGAGCAGGTGATATT 59.108 34.615 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.338973 CATGGTTGCTCAACTGCAGTT 59.661 47.619 26.36 26.36 44.27 3.16
6 7 0.956633 CATGGTTGCTCAACTGCAGT 59.043 50.000 15.25 15.25 44.27 4.40
7 8 0.242825 CCATGGTTGCTCAACTGCAG 59.757 55.000 13.48 13.48 44.27 4.41
8 9 1.808531 GCCATGGTTGCTCAACTGCA 61.809 55.000 14.67 3.93 40.94 4.41
9 10 1.080298 GCCATGGTTGCTCAACTGC 60.080 57.895 14.67 6.92 40.94 4.40
10 11 0.675083 TTGCCATGGTTGCTCAACTG 59.325 50.000 14.67 4.33 40.94 3.16
11 12 0.675633 GTTGCCATGGTTGCTCAACT 59.324 50.000 19.25 0.00 40.94 3.16
12 13 0.675633 AGTTGCCATGGTTGCTCAAC 59.324 50.000 19.02 19.02 40.45 3.18
13 14 0.675083 CAGTTGCCATGGTTGCTCAA 59.325 50.000 14.67 5.59 0.00 3.02
14 15 1.808531 GCAGTTGCCATGGTTGCTCA 61.809 55.000 14.67 0.00 34.31 4.26
15 16 1.080298 GCAGTTGCCATGGTTGCTC 60.080 57.895 14.67 0.00 34.31 4.26
16 17 1.812686 CTGCAGTTGCCATGGTTGCT 61.813 55.000 23.42 13.48 41.18 3.91
17 18 1.373748 CTGCAGTTGCCATGGTTGC 60.374 57.895 14.67 17.56 41.18 4.17
18 19 0.892755 ATCTGCAGTTGCCATGGTTG 59.107 50.000 14.67 8.32 41.18 3.77
19 20 2.512692 TATCTGCAGTTGCCATGGTT 57.487 45.000 14.67 0.00 41.18 3.67
20 21 2.493278 GTTTATCTGCAGTTGCCATGGT 59.507 45.455 14.67 0.00 41.18 3.55
21 22 2.478370 CGTTTATCTGCAGTTGCCATGG 60.478 50.000 14.67 7.63 41.18 3.66
22 23 2.419673 TCGTTTATCTGCAGTTGCCATG 59.580 45.455 14.67 1.44 41.18 3.66
23 24 2.710377 TCGTTTATCTGCAGTTGCCAT 58.290 42.857 14.67 1.49 41.18 4.40
24 25 2.177394 TCGTTTATCTGCAGTTGCCA 57.823 45.000 14.67 0.00 41.18 4.92
25 26 2.225491 TGTTCGTTTATCTGCAGTTGCC 59.775 45.455 14.67 0.00 41.18 4.52
26 27 3.536158 TGTTCGTTTATCTGCAGTTGC 57.464 42.857 14.67 0.00 42.50 4.17
27 28 4.154015 TCCATGTTCGTTTATCTGCAGTTG 59.846 41.667 14.67 0.00 0.00 3.16
28 29 4.154195 GTCCATGTTCGTTTATCTGCAGTT 59.846 41.667 14.67 8.22 0.00 3.16
29 30 3.684788 GTCCATGTTCGTTTATCTGCAGT 59.315 43.478 14.67 3.75 0.00 4.40
30 31 3.242091 CGTCCATGTTCGTTTATCTGCAG 60.242 47.826 7.63 7.63 0.00 4.41
31 32 2.670905 CGTCCATGTTCGTTTATCTGCA 59.329 45.455 0.00 0.00 0.00 4.41
32 33 2.927477 TCGTCCATGTTCGTTTATCTGC 59.073 45.455 6.65 0.00 0.00 4.26
33 34 3.551890 CCTCGTCCATGTTCGTTTATCTG 59.448 47.826 6.65 0.00 0.00 2.90
34 35 3.430374 CCCTCGTCCATGTTCGTTTATCT 60.430 47.826 6.65 0.00 0.00 1.98
35 36 2.864343 CCCTCGTCCATGTTCGTTTATC 59.136 50.000 6.65 0.00 0.00 1.75
36 37 2.235402 ACCCTCGTCCATGTTCGTTTAT 59.765 45.455 6.65 0.00 0.00 1.40
37 38 1.619827 ACCCTCGTCCATGTTCGTTTA 59.380 47.619 6.65 0.00 0.00 2.01
38 39 0.395312 ACCCTCGTCCATGTTCGTTT 59.605 50.000 6.65 0.00 0.00 3.60
39 40 0.037605 GACCCTCGTCCATGTTCGTT 60.038 55.000 6.65 0.00 32.40 3.85
40 41 0.898789 AGACCCTCGTCCATGTTCGT 60.899 55.000 6.65 0.00 40.12 3.85
41 42 0.458543 CAGACCCTCGTCCATGTTCG 60.459 60.000 0.00 0.00 40.12 3.95
42 43 0.108138 CCAGACCCTCGTCCATGTTC 60.108 60.000 0.00 0.00 40.12 3.18
43 44 0.544357 TCCAGACCCTCGTCCATGTT 60.544 55.000 0.00 0.00 40.12 2.71
44 45 1.078528 TCCAGACCCTCGTCCATGT 59.921 57.895 0.00 0.00 40.12 3.21
45 46 1.517832 GTCCAGACCCTCGTCCATG 59.482 63.158 0.00 0.00 40.12 3.66
46 47 1.686110 GGTCCAGACCCTCGTCCAT 60.686 63.158 5.46 0.00 45.68 3.41
47 48 2.283676 GGTCCAGACCCTCGTCCA 60.284 66.667 5.46 0.00 45.68 4.02
56 57 1.589716 GCAGTTGCCATGGTCCAGAC 61.590 60.000 14.67 5.40 34.31 3.51
57 58 1.303561 GCAGTTGCCATGGTCCAGA 60.304 57.895 14.67 0.00 34.31 3.86
58 59 2.693762 CGCAGTTGCCATGGTCCAG 61.694 63.158 14.67 1.29 37.91 3.86
59 60 2.672651 CGCAGTTGCCATGGTCCA 60.673 61.111 14.67 0.00 37.91 4.02
60 61 3.443045 CCGCAGTTGCCATGGTCC 61.443 66.667 14.67 1.25 37.91 4.46
61 62 3.443045 CCCGCAGTTGCCATGGTC 61.443 66.667 14.67 6.41 37.91 4.02
102 103 4.760047 CCCTTCTGGTCCCGCACG 62.760 72.222 0.00 0.00 0.00 5.34
111 112 1.686110 AGGCCTCGTACCCTTCTGG 60.686 63.158 0.00 0.00 41.37 3.86
112 113 0.970937 TCAGGCCTCGTACCCTTCTG 60.971 60.000 0.00 0.00 0.00 3.02
113 114 0.971447 GTCAGGCCTCGTACCCTTCT 60.971 60.000 0.00 0.00 0.00 2.85
114 115 1.255667 TGTCAGGCCTCGTACCCTTC 61.256 60.000 0.00 0.00 0.00 3.46
115 116 0.617820 ATGTCAGGCCTCGTACCCTT 60.618 55.000 0.00 0.00 0.00 3.95
116 117 0.260816 TATGTCAGGCCTCGTACCCT 59.739 55.000 0.00 0.00 0.00 4.34
117 118 0.388294 GTATGTCAGGCCTCGTACCC 59.612 60.000 0.00 0.00 0.00 3.69
118 119 0.030369 CGTATGTCAGGCCTCGTACC 59.970 60.000 0.00 0.00 0.00 3.34
119 120 0.030369 CCGTATGTCAGGCCTCGTAC 59.970 60.000 0.00 8.08 0.00 3.67
120 121 1.105167 CCCGTATGTCAGGCCTCGTA 61.105 60.000 0.00 0.00 0.00 3.43
121 122 2.423898 CCCGTATGTCAGGCCTCGT 61.424 63.158 0.00 0.00 0.00 4.18
122 123 2.417516 CCCGTATGTCAGGCCTCG 59.582 66.667 0.00 1.29 0.00 4.63
123 124 2.109181 GCCCGTATGTCAGGCCTC 59.891 66.667 0.00 0.00 41.00 4.70
124 125 3.849951 CGCCCGTATGTCAGGCCT 61.850 66.667 0.00 0.00 44.13 5.19
125 126 4.157120 ACGCCCGTATGTCAGGCC 62.157 66.667 0.00 0.00 44.13 5.19
126 127 2.890474 CACGCCCGTATGTCAGGC 60.890 66.667 0.00 0.00 43.53 4.85
127 128 1.809619 CACACGCCCGTATGTCAGG 60.810 63.158 0.00 0.00 0.00 3.86
128 129 1.809619 CCACACGCCCGTATGTCAG 60.810 63.158 0.00 0.00 0.00 3.51
129 130 2.263227 CCACACGCCCGTATGTCA 59.737 61.111 0.00 0.00 0.00 3.58
130 131 2.510691 CCCACACGCCCGTATGTC 60.511 66.667 0.00 0.00 0.00 3.06
131 132 4.770874 GCCCACACGCCCGTATGT 62.771 66.667 0.00 0.00 0.00 2.29
137 138 4.337060 GAAAACGCCCACACGCCC 62.337 66.667 0.00 0.00 36.19 6.13
138 139 2.414840 ATTGAAAACGCCCACACGCC 62.415 55.000 0.00 0.00 36.19 5.68
139 140 0.596341 AATTGAAAACGCCCACACGC 60.596 50.000 0.00 0.00 36.19 5.34
140 141 1.784283 GAAATTGAAAACGCCCACACG 59.216 47.619 0.00 0.00 39.50 4.49
141 142 1.784283 CGAAATTGAAAACGCCCACAC 59.216 47.619 0.00 0.00 0.00 3.82
142 143 1.866063 GCGAAATTGAAAACGCCCACA 60.866 47.619 0.00 0.00 44.27 4.17
143 144 0.781787 GCGAAATTGAAAACGCCCAC 59.218 50.000 0.00 0.00 44.27 4.61
144 145 3.187211 GCGAAATTGAAAACGCCCA 57.813 47.368 0.00 0.00 44.27 5.36
148 149 2.126914 TGTGGGCGAAATTGAAAACG 57.873 45.000 0.00 0.00 0.00 3.60
149 150 3.389221 ACATGTGGGCGAAATTGAAAAC 58.611 40.909 0.00 0.00 0.00 2.43
150 151 3.742433 ACATGTGGGCGAAATTGAAAA 57.258 38.095 0.00 0.00 0.00 2.29
151 152 3.365465 CGTACATGTGGGCGAAATTGAAA 60.365 43.478 9.11 0.00 0.00 2.69
152 153 2.160615 CGTACATGTGGGCGAAATTGAA 59.839 45.455 9.11 0.00 0.00 2.69
153 154 1.735018 CGTACATGTGGGCGAAATTGA 59.265 47.619 9.11 0.00 0.00 2.57
154 155 1.793714 GCGTACATGTGGGCGAAATTG 60.794 52.381 18.71 0.00 0.00 2.32
155 156 0.450184 GCGTACATGTGGGCGAAATT 59.550 50.000 18.71 0.00 0.00 1.82
156 157 2.094904 GCGTACATGTGGGCGAAAT 58.905 52.632 18.71 0.00 0.00 2.17
157 158 3.568686 GCGTACATGTGGGCGAAA 58.431 55.556 18.71 0.00 0.00 3.46
161 162 2.740826 ACACGCGTACATGTGGGC 60.741 61.111 13.44 10.65 40.39 5.36
162 163 1.351430 CTCACACGCGTACATGTGGG 61.351 60.000 22.46 17.80 45.16 4.61
163 164 0.388006 TCTCACACGCGTACATGTGG 60.388 55.000 22.46 15.10 45.16 4.17
164 165 0.984829 CTCTCACACGCGTACATGTG 59.015 55.000 13.44 16.61 46.22 3.21
165 166 0.879090 TCTCTCACACGCGTACATGT 59.121 50.000 13.44 1.90 0.00 3.21
166 167 1.135660 ACTCTCTCACACGCGTACATG 60.136 52.381 13.44 11.42 0.00 3.21
167 168 1.166129 ACTCTCTCACACGCGTACAT 58.834 50.000 13.44 0.00 0.00 2.29
168 169 0.949397 AACTCTCTCACACGCGTACA 59.051 50.000 13.44 0.00 0.00 2.90
169 170 1.069432 TGAACTCTCTCACACGCGTAC 60.069 52.381 13.44 0.00 0.00 3.67
170 171 1.197036 CTGAACTCTCTCACACGCGTA 59.803 52.381 13.44 0.00 0.00 4.42
171 172 0.039978 CTGAACTCTCTCACACGCGT 60.040 55.000 5.58 5.58 0.00 6.01
172 173 0.730834 CCTGAACTCTCTCACACGCG 60.731 60.000 3.53 3.53 0.00 6.01
173 174 0.598562 TCCTGAACTCTCTCACACGC 59.401 55.000 0.00 0.00 0.00 5.34
174 175 1.201181 CCTCCTGAACTCTCTCACACG 59.799 57.143 0.00 0.00 0.00 4.49
175 176 1.548269 CCCTCCTGAACTCTCTCACAC 59.452 57.143 0.00 0.00 0.00 3.82
176 177 1.429299 TCCCTCCTGAACTCTCTCACA 59.571 52.381 0.00 0.00 0.00 3.58
177 178 2.223803 TCCCTCCTGAACTCTCTCAC 57.776 55.000 0.00 0.00 0.00 3.51
178 179 3.260269 TTTCCCTCCTGAACTCTCTCA 57.740 47.619 0.00 0.00 0.00 3.27
179 180 4.625607 TTTTTCCCTCCTGAACTCTCTC 57.374 45.455 0.00 0.00 0.00 3.20
198 199 4.574828 ACTAATGCTCACACACGTCTTTTT 59.425 37.500 0.00 0.00 0.00 1.94
199 200 4.127171 ACTAATGCTCACACACGTCTTTT 58.873 39.130 0.00 0.00 0.00 2.27
200 201 3.728845 ACTAATGCTCACACACGTCTTT 58.271 40.909 0.00 0.00 0.00 2.52
201 202 3.386768 ACTAATGCTCACACACGTCTT 57.613 42.857 0.00 0.00 0.00 3.01
202 203 3.059884 CAACTAATGCTCACACACGTCT 58.940 45.455 0.00 0.00 0.00 4.18
203 204 2.800544 ACAACTAATGCTCACACACGTC 59.199 45.455 0.00 0.00 0.00 4.34
204 205 2.833794 ACAACTAATGCTCACACACGT 58.166 42.857 0.00 0.00 0.00 4.49
205 206 3.878086 AACAACTAATGCTCACACACG 57.122 42.857 0.00 0.00 0.00 4.49
206 207 5.455525 GTCAAAACAACTAATGCTCACACAC 59.544 40.000 0.00 0.00 0.00 3.82
207 208 5.449862 GGTCAAAACAACTAATGCTCACACA 60.450 40.000 0.00 0.00 0.00 3.72
208 209 4.976116 GGTCAAAACAACTAATGCTCACAC 59.024 41.667 0.00 0.00 0.00 3.82
209 210 4.642437 TGGTCAAAACAACTAATGCTCACA 59.358 37.500 0.00 0.00 0.00 3.58
210 211 4.976116 GTGGTCAAAACAACTAATGCTCAC 59.024 41.667 0.00 0.00 0.00 3.51
211 212 4.642437 TGTGGTCAAAACAACTAATGCTCA 59.358 37.500 0.00 0.00 29.93 4.26
212 213 4.976116 GTGTGGTCAAAACAACTAATGCTC 59.024 41.667 0.00 0.00 29.93 4.26
213 214 4.497340 CGTGTGGTCAAAACAACTAATGCT 60.497 41.667 0.00 0.00 29.93 3.79
214 215 3.728718 CGTGTGGTCAAAACAACTAATGC 59.271 43.478 0.00 0.00 29.93 3.56
215 216 4.915704 ACGTGTGGTCAAAACAACTAATG 58.084 39.130 0.00 0.00 29.93 1.90
216 217 5.237779 CCTACGTGTGGTCAAAACAACTAAT 59.762 40.000 0.00 0.00 29.93 1.73
217 218 4.571580 CCTACGTGTGGTCAAAACAACTAA 59.428 41.667 0.00 0.00 29.93 2.24
218 219 4.121317 CCTACGTGTGGTCAAAACAACTA 58.879 43.478 0.00 0.00 29.93 2.24
219 220 2.940410 CCTACGTGTGGTCAAAACAACT 59.060 45.455 0.00 0.00 29.93 3.16
220 221 2.937799 TCCTACGTGTGGTCAAAACAAC 59.062 45.455 0.00 0.00 0.00 3.32
221 222 3.199677 CTCCTACGTGTGGTCAAAACAA 58.800 45.455 0.00 0.00 0.00 2.83
222 223 2.168936 ACTCCTACGTGTGGTCAAAACA 59.831 45.455 0.00 0.00 0.00 2.83
223 224 2.542595 CACTCCTACGTGTGGTCAAAAC 59.457 50.000 0.00 0.00 31.27 2.43
224 225 2.168936 ACACTCCTACGTGTGGTCAAAA 59.831 45.455 0.00 0.00 45.74 2.44
225 226 1.758280 ACACTCCTACGTGTGGTCAAA 59.242 47.619 0.00 0.00 45.74 2.69
226 227 1.405872 ACACTCCTACGTGTGGTCAA 58.594 50.000 0.00 0.00 45.74 3.18
227 228 3.120796 ACACTCCTACGTGTGGTCA 57.879 52.632 0.00 0.00 45.74 4.02
233 234 1.079819 CAGCCCACACTCCTACGTG 60.080 63.158 0.00 0.00 40.67 4.49
234 235 2.283529 CCAGCCCACACTCCTACGT 61.284 63.158 0.00 0.00 0.00 3.57
235 236 1.827399 AACCAGCCCACACTCCTACG 61.827 60.000 0.00 0.00 0.00 3.51
236 237 0.321653 CAACCAGCCCACACTCCTAC 60.322 60.000 0.00 0.00 0.00 3.18
237 238 2.066340 CAACCAGCCCACACTCCTA 58.934 57.895 0.00 0.00 0.00 2.94
238 239 2.839098 CAACCAGCCCACACTCCT 59.161 61.111 0.00 0.00 0.00 3.69
239 240 2.985847 GCAACCAGCCCACACTCC 60.986 66.667 0.00 0.00 37.23 3.85
248 249 2.570181 GCATGGACAGCAACCAGC 59.430 61.111 0.00 0.00 40.89 4.85
249 250 1.604308 TGGCATGGACAGCAACCAG 60.604 57.895 0.00 0.00 40.89 4.00
250 251 1.902918 GTGGCATGGACAGCAACCA 60.903 57.895 0.00 0.00 41.83 3.67
251 252 1.902918 TGTGGCATGGACAGCAACC 60.903 57.895 0.00 0.00 35.00 3.77
252 253 1.286880 GTGTGGCATGGACAGCAAC 59.713 57.895 0.00 0.00 36.45 4.17
253 254 2.260154 CGTGTGGCATGGACAGCAA 61.260 57.895 0.00 0.00 0.00 3.91
254 255 2.669229 CGTGTGGCATGGACAGCA 60.669 61.111 0.00 0.00 0.00 4.41
255 256 2.358615 TCGTGTGGCATGGACAGC 60.359 61.111 0.00 0.00 0.00 4.40
256 257 1.742880 CCTCGTGTGGCATGGACAG 60.743 63.158 0.00 0.00 0.00 3.51
257 258 2.347114 CCTCGTGTGGCATGGACA 59.653 61.111 0.00 0.00 0.00 4.02
269 270 4.539083 TTGTGCCACACGCCTCGT 62.539 61.111 0.00 0.00 42.36 4.18
270 271 4.012895 GTTGTGCCACACGCCTCG 62.013 66.667 0.00 0.00 37.14 4.63
271 272 0.673644 ATAGTTGTGCCACACGCCTC 60.674 55.000 0.00 0.00 37.14 4.70
272 273 0.673644 GATAGTTGTGCCACACGCCT 60.674 55.000 0.00 0.00 37.14 5.52
273 274 1.644786 GGATAGTTGTGCCACACGCC 61.645 60.000 0.00 0.00 37.14 5.68
274 275 1.794222 GGATAGTTGTGCCACACGC 59.206 57.895 0.00 0.00 37.14 5.34
275 276 0.389296 TCGGATAGTTGTGCCACACG 60.389 55.000 0.00 0.00 37.14 4.49
276 277 2.024176 ATCGGATAGTTGTGCCACAC 57.976 50.000 0.00 0.00 34.56 3.82
277 278 2.498078 TGTATCGGATAGTTGTGCCACA 59.502 45.455 0.00 0.00 0.00 4.17
278 279 2.864343 GTGTATCGGATAGTTGTGCCAC 59.136 50.000 0.00 0.00 0.00 5.01
279 280 2.159014 GGTGTATCGGATAGTTGTGCCA 60.159 50.000 0.00 0.00 0.00 4.92
280 281 2.159014 TGGTGTATCGGATAGTTGTGCC 60.159 50.000 0.00 0.00 0.00 5.01
281 282 2.864343 GTGGTGTATCGGATAGTTGTGC 59.136 50.000 0.00 0.00 0.00 4.57
282 283 3.863424 GTGTGGTGTATCGGATAGTTGTG 59.137 47.826 0.00 0.00 0.00 3.33
283 284 3.428452 CGTGTGGTGTATCGGATAGTTGT 60.428 47.826 0.00 0.00 0.00 3.32
284 285 3.113322 CGTGTGGTGTATCGGATAGTTG 58.887 50.000 0.00 0.00 0.00 3.16
285 286 2.756760 ACGTGTGGTGTATCGGATAGTT 59.243 45.455 0.00 0.00 0.00 2.24
286 287 2.098607 CACGTGTGGTGTATCGGATAGT 59.901 50.000 7.58 0.00 41.89 2.12
287 288 2.727777 CACGTGTGGTGTATCGGATAG 58.272 52.381 7.58 0.00 41.89 2.08
288 289 2.855660 CACGTGTGGTGTATCGGATA 57.144 50.000 7.58 0.00 41.89 2.59
289 290 3.733236 CACGTGTGGTGTATCGGAT 57.267 52.632 7.58 0.00 41.89 4.18
300 301 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
301 302 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
302 303 1.358725 CCCGATAACTGCCACACGTG 61.359 60.000 15.48 15.48 0.00 4.49
303 304 1.079405 CCCGATAACTGCCACACGT 60.079 57.895 0.00 0.00 0.00 4.49
304 305 1.082117 GTCCCGATAACTGCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
305 306 0.743345 GGTCCCGATAACTGCCACAC 60.743 60.000 0.00 0.00 0.00 3.82
306 307 1.600107 GGTCCCGATAACTGCCACA 59.400 57.895 0.00 0.00 0.00 4.17
307 308 1.153229 GGGTCCCGATAACTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
308 309 3.316029 GGGTCCCGATAACTGCCA 58.684 61.111 0.00 0.00 0.00 4.92
319 320 2.097036 CAACTTTAAATCCCGGGTCCC 58.903 52.381 22.86 0.00 0.00 4.46
320 321 3.014623 CTCAACTTTAAATCCCGGGTCC 58.985 50.000 22.86 0.00 0.00 4.46
321 322 3.014623 CCTCAACTTTAAATCCCGGGTC 58.985 50.000 22.86 0.00 0.00 4.46
322 323 2.645797 TCCTCAACTTTAAATCCCGGGT 59.354 45.455 22.86 3.24 0.00 5.28
323 324 3.359695 TCCTCAACTTTAAATCCCGGG 57.640 47.619 16.85 16.85 0.00 5.73
324 325 4.947388 TGAATCCTCAACTTTAAATCCCGG 59.053 41.667 0.00 0.00 0.00 5.73
325 326 6.699575 ATGAATCCTCAACTTTAAATCCCG 57.300 37.500 0.00 0.00 34.49 5.14
353 354 6.712179 AACCCTTACTTTATAGAGACCGAG 57.288 41.667 0.00 0.00 0.00 4.63
370 371 6.771267 ACGAGAAAAGTCTGAAATAAACCCTT 59.229 34.615 0.00 0.00 32.80 3.95
398 399 2.263227 CCATGACGTACACCGCCA 59.737 61.111 0.00 0.00 41.42 5.69
402 403 1.137086 AGATGAGCCATGACGTACACC 59.863 52.381 0.00 0.00 0.00 4.16
504 507 3.612860 GCTGTCGATTACAAGTTCGTCAT 59.387 43.478 0.00 0.00 37.74 3.06
531 534 1.558233 AGGGACAAAGACTCGGTAGG 58.442 55.000 0.00 0.00 0.00 3.18
564 567 0.681564 AGCTCTTCTGTCCGTCGGAT 60.682 55.000 18.75 0.00 32.73 4.18
606 633 0.600782 CATGTGCAACTTTGGGTGCC 60.601 55.000 3.55 0.00 38.04 5.01
634 661 4.690719 CACGGCCTGCGGGTAACA 62.691 66.667 14.55 0.00 39.74 2.41
668 695 1.070786 GCCGACTTGGACTTGGACA 59.929 57.895 0.00 0.00 42.00 4.02
752 779 1.031571 TATAGGTTGGTCGGCGTCGT 61.032 55.000 10.18 0.00 37.69 4.34
768 795 8.888836 TTGGACTTGGACTCGGAATATATATA 57.111 34.615 0.00 0.00 0.00 0.86
769 796 7.455008 ACTTGGACTTGGACTCGGAATATATAT 59.545 37.037 0.00 0.00 0.00 0.86
770 797 6.781014 ACTTGGACTTGGACTCGGAATATATA 59.219 38.462 0.00 0.00 0.00 0.86
771 798 5.602978 ACTTGGACTTGGACTCGGAATATAT 59.397 40.000 0.00 0.00 0.00 0.86
848 875 1.797537 GACACGAAAAGCCGCATGC 60.798 57.895 7.91 7.91 41.71 4.06
850 877 1.577328 CCTGACACGAAAAGCCGCAT 61.577 55.000 0.00 0.00 0.00 4.73
859 886 2.355837 GCTGCGACCTGACACGAA 60.356 61.111 0.00 0.00 0.00 3.85
898 925 2.025418 GCGGTCGATTGTTGACGGT 61.025 57.895 0.00 0.00 38.49 4.83
989 1032 0.539438 TGCTTGGTTTCCGATGGCTT 60.539 50.000 0.00 0.00 0.00 4.35
1017 1060 1.448540 GGTATGCGAGTGTGCTGCT 60.449 57.895 0.00 0.00 35.36 4.24
1156 1199 1.452651 CTGCGGCACCTCCATGAAT 60.453 57.895 0.00 0.00 34.01 2.57
1203 1246 4.834453 CTCCTCCTGCCGCTGCTG 62.834 72.222 0.70 0.23 38.71 4.41
1223 1266 3.062466 CGAGAGCCCTGGTCGACA 61.062 66.667 18.91 2.63 35.70 4.35
1314 1357 1.069427 GCAGATCAGCCGCTCAGAT 59.931 57.895 0.00 0.00 0.00 2.90
1316 1359 1.883544 CAGCAGATCAGCCGCTCAG 60.884 63.158 6.46 0.00 32.48 3.35
1330 1373 0.684479 ACTATCCCGAGACAGCAGCA 60.684 55.000 0.00 0.00 0.00 4.41
1380 1425 8.696374 CACCTCCTCTGAACATACTAATTAAGA 58.304 37.037 0.00 0.00 0.00 2.10
1391 1436 4.916041 TTCATTCACCTCCTCTGAACAT 57.084 40.909 0.00 0.00 30.46 2.71
1392 1437 4.916041 ATTCATTCACCTCCTCTGAACA 57.084 40.909 0.00 0.00 30.46 3.18
1393 1438 6.314896 CAGTAATTCATTCACCTCCTCTGAAC 59.685 42.308 0.00 0.00 30.46 3.18
1394 1439 6.213397 TCAGTAATTCATTCACCTCCTCTGAA 59.787 38.462 0.00 0.00 32.24 3.02
1395 1440 5.721480 TCAGTAATTCATTCACCTCCTCTGA 59.279 40.000 0.00 0.00 0.00 3.27
1396 1441 5.982356 TCAGTAATTCATTCACCTCCTCTG 58.018 41.667 0.00 0.00 0.00 3.35
1411 3344 6.233430 GCATGAAGCGTATGATCAGTAATT 57.767 37.500 0.09 0.00 0.00 1.40
1430 3363 4.569761 AGCAGCATAAAAGATGAGCATG 57.430 40.909 0.00 0.00 0.00 4.06
1436 3369 5.557893 GCTCGAGTTAGCAGCATAAAAGATG 60.558 44.000 15.13 0.00 42.30 2.90
1495 3429 0.613012 GAGTTGGGGGCAGCAATTCT 60.613 55.000 0.00 0.00 0.00 2.40
1501 3435 4.748144 CAGGGAGTTGGGGGCAGC 62.748 72.222 0.00 0.00 0.00 5.25
1504 3438 3.580319 ACACAGGGAGTTGGGGGC 61.580 66.667 0.00 0.00 0.00 5.80
1523 3475 8.960075 GTGCGTGTGTTTTAACATTTTAAGTAT 58.040 29.630 0.00 0.00 41.59 2.12
1524 3476 7.163845 CGTGCGTGTGTTTTAACATTTTAAGTA 59.836 33.333 0.00 0.00 41.59 2.24
1526 3478 6.021311 ACGTGCGTGTGTTTTAACATTTTAAG 60.021 34.615 0.00 0.00 41.59 1.85
1528 3480 5.330295 ACGTGCGTGTGTTTTAACATTTTA 58.670 33.333 0.00 0.00 41.59 1.52
1546 3498 3.065019 TCTGCAAAAAGAAGAACGTGC 57.935 42.857 0.00 0.00 0.00 5.34
1550 3502 6.731948 CGTTGTTTTTCTGCAAAAAGAAGAAC 59.268 34.615 6.46 8.87 41.75 3.01
1573 3525 1.958579 CCCCATTGATCAATGCATCGT 59.041 47.619 33.78 6.29 45.06 3.73
1581 3533 3.007831 GTGGCTTTTTCCCCATTGATCAA 59.992 43.478 11.26 11.26 32.95 2.57
1623 3575 9.969001 AAGGTTGGCTGAGTATTTAGTATTTAA 57.031 29.630 0.00 0.00 0.00 1.52
1632 3584 7.069455 ACAAAAGTTAAGGTTGGCTGAGTATTT 59.931 33.333 0.00 0.00 0.00 1.40
1633 3585 6.549736 ACAAAAGTTAAGGTTGGCTGAGTATT 59.450 34.615 0.00 0.00 0.00 1.89
1635 3587 5.298276 CACAAAAGTTAAGGTTGGCTGAGTA 59.702 40.000 0.00 0.00 0.00 2.59
1636 3588 4.097892 CACAAAAGTTAAGGTTGGCTGAGT 59.902 41.667 0.00 0.00 0.00 3.41
1637 3589 4.338118 TCACAAAAGTTAAGGTTGGCTGAG 59.662 41.667 0.00 0.00 0.00 3.35
1638 3590 4.274147 TCACAAAAGTTAAGGTTGGCTGA 58.726 39.130 0.00 0.00 0.00 4.26
1639 3591 4.647424 TCACAAAAGTTAAGGTTGGCTG 57.353 40.909 0.00 0.00 0.00 4.85
1640 3592 5.869649 AATCACAAAAGTTAAGGTTGGCT 57.130 34.783 0.00 0.00 0.00 4.75
1641 3593 7.360017 GCATTAATCACAAAAGTTAAGGTTGGC 60.360 37.037 0.00 0.00 0.00 4.52
1650 3602 6.282930 AGCACAAGCATTAATCACAAAAGTT 58.717 32.000 0.00 0.00 45.49 2.66
1696 3648 7.136822 ACTATTGGACCTTGCTATATGTTCA 57.863 36.000 0.00 0.00 0.00 3.18
1747 3699 4.024893 CACGCTAACATGTCAAACAGAAGT 60.025 41.667 0.00 0.00 0.00 3.01
1778 3730 9.976511 AACATTGCGTAATAGACTAATAGCTAA 57.023 29.630 0.00 0.00 0.00 3.09
1810 3762 4.156008 CCTCTGGTTGCGTAATAGCTTTTT 59.844 41.667 0.00 0.00 38.13 1.94
1811 3763 3.689649 CCTCTGGTTGCGTAATAGCTTTT 59.310 43.478 0.00 0.00 38.13 2.27
1812 3764 3.055385 TCCTCTGGTTGCGTAATAGCTTT 60.055 43.478 0.00 0.00 38.13 3.51
1813 3765 2.500098 TCCTCTGGTTGCGTAATAGCTT 59.500 45.455 0.00 0.00 38.13 3.74
1814 3766 2.108168 TCCTCTGGTTGCGTAATAGCT 58.892 47.619 0.00 0.00 38.13 3.32
1815 3767 2.596904 TCCTCTGGTTGCGTAATAGC 57.403 50.000 0.00 0.00 37.71 2.97
1816 3768 3.309954 GCTTTCCTCTGGTTGCGTAATAG 59.690 47.826 0.00 0.00 0.00 1.73
1817 3769 3.267483 GCTTTCCTCTGGTTGCGTAATA 58.733 45.455 0.00 0.00 0.00 0.98
1818 3770 2.084546 GCTTTCCTCTGGTTGCGTAAT 58.915 47.619 0.00 0.00 0.00 1.89
1819 3771 1.519408 GCTTTCCTCTGGTTGCGTAA 58.481 50.000 0.00 0.00 0.00 3.18
1820 3772 0.669318 CGCTTTCCTCTGGTTGCGTA 60.669 55.000 0.00 0.00 38.81 4.42
1821 3773 1.961277 CGCTTTCCTCTGGTTGCGT 60.961 57.895 0.00 0.00 38.81 5.24
1822 3774 2.863153 CGCTTTCCTCTGGTTGCG 59.137 61.111 0.00 0.00 37.57 4.85
1826 3778 1.001406 CTCTTGACGCTTTCCTCTGGT 59.999 52.381 0.00 0.00 0.00 4.00
1842 3794 3.519510 TGAACCCCTTTCGATCATCTCTT 59.480 43.478 0.00 0.00 36.97 2.85
1853 3805 4.126437 CCAAACATTTGTGAACCCCTTTC 58.874 43.478 3.79 0.00 36.45 2.62
1862 3814 5.509501 GCTTCTGATTCCCAAACATTTGTGA 60.510 40.000 3.79 0.00 36.45 3.58
1870 3822 3.129988 CCTGATGCTTCTGATTCCCAAAC 59.870 47.826 7.90 0.00 0.00 2.93
1884 3836 0.037877 ACTGCTTTGCTCCTGATGCT 59.962 50.000 0.00 0.00 0.00 3.79
1934 3886 9.745018 CCTGGATTTTGTATAGAATGTGGATAT 57.255 33.333 0.00 0.00 0.00 1.63
1938 3891 7.880160 TTCCTGGATTTTGTATAGAATGTGG 57.120 36.000 0.00 0.00 0.00 4.17
1943 3896 7.147915 GCCATGTTTCCTGGATTTTGTATAGAA 60.148 37.037 0.00 0.00 35.70 2.10
1947 3900 4.776837 TGCCATGTTTCCTGGATTTTGTAT 59.223 37.500 0.00 0.00 35.70 2.29
1969 3922 6.426633 TGGTGACAACTCATTACTAACATGTG 59.573 38.462 0.00 0.00 37.44 3.21
1992 3945 0.179156 GTTGTGCCATCATTCGCTGG 60.179 55.000 0.00 0.00 35.53 4.85
2000 3953 2.655090 TCTTTCAGGTTGTGCCATCA 57.345 45.000 0.00 0.00 40.61 3.07
2007 3960 1.970640 GGGGCAAATCTTTCAGGTTGT 59.029 47.619 0.00 0.00 0.00 3.32
2010 3963 0.786435 AGGGGGCAAATCTTTCAGGT 59.214 50.000 0.00 0.00 0.00 4.00
2012 3965 2.373224 GAGAGGGGGCAAATCTTTCAG 58.627 52.381 0.00 0.00 0.00 3.02
2016 3969 1.077429 GCGAGAGGGGGCAAATCTT 60.077 57.895 0.00 0.00 0.00 2.40
2028 3981 4.735132 TTTCACCCCGCGCGAGAG 62.735 66.667 34.63 21.29 0.00 3.20
2033 3986 2.126502 CAACATTTCACCCCGCGC 60.127 61.111 0.00 0.00 0.00 6.86
2036 3989 5.127693 TCAATAAACAACATTTCACCCCG 57.872 39.130 0.00 0.00 0.00 5.73
2045 3998 9.829507 TCCAGAAAACAAATCAATAAACAACAT 57.170 25.926 0.00 0.00 0.00 2.71
2062 4015 5.858581 CACCTCGATTTCATTTCCAGAAAAC 59.141 40.000 0.00 0.00 38.36 2.43
2063 4016 5.767665 TCACCTCGATTTCATTTCCAGAAAA 59.232 36.000 0.00 0.00 38.36 2.29
2064 4017 5.312895 TCACCTCGATTTCATTTCCAGAAA 58.687 37.500 0.00 0.00 39.11 2.52
2068 4021 5.534654 ACTTTTCACCTCGATTTCATTTCCA 59.465 36.000 0.00 0.00 0.00 3.53
2074 4027 4.124238 ACGAACTTTTCACCTCGATTTCA 58.876 39.130 0.00 0.00 35.34 2.69
2082 4036 5.828299 TCAAATTGACGAACTTTTCACCT 57.172 34.783 0.00 0.00 0.00 4.00
2102 4056 8.149647 ACAATTGCCATTCAACTCTTATTTTCA 58.850 29.630 5.05 0.00 37.53 2.69
2108 4062 6.839124 ATCACAATTGCCATTCAACTCTTA 57.161 33.333 5.05 0.00 37.53 2.10
2130 4084 3.778265 AGCCAAGTGGGTAAATGTCAAT 58.222 40.909 0.00 0.00 45.38 2.57
2143 4097 4.878397 CCTTAAGATGGAACTAGCCAAGTG 59.122 45.833 3.36 0.00 42.16 3.16
2146 4100 3.523564 AGCCTTAAGATGGAACTAGCCAA 59.476 43.478 3.36 0.00 42.16 4.52
2148 4102 3.847671 AGCCTTAAGATGGAACTAGCC 57.152 47.619 3.36 0.00 0.00 3.93
2151 4105 7.328737 GTCAACTTAGCCTTAAGATGGAACTA 58.671 38.462 3.36 0.00 39.10 2.24
2153 4107 5.354513 GGTCAACTTAGCCTTAAGATGGAAC 59.645 44.000 3.36 0.00 39.10 3.62
2165 4119 3.487372 AGAAAGGTTGGTCAACTTAGCC 58.513 45.455 12.75 0.00 40.94 3.93
2183 8112 8.965819 TGCTGCCAAAGAATTTATTATGTAGAA 58.034 29.630 0.00 0.00 35.03 2.10
2184 8113 8.518430 TGCTGCCAAAGAATTTATTATGTAGA 57.482 30.769 0.00 0.00 35.03 2.59
2207 8136 7.969536 ATAACATACAGATGGTGAAGTATGC 57.030 36.000 10.37 0.00 44.64 3.14
2212 8141 9.388506 AGAGAAAATAACATACAGATGGTGAAG 57.611 33.333 0.00 0.00 37.39 3.02
2216 8145 9.331282 GCTTAGAGAAAATAACATACAGATGGT 57.669 33.333 0.00 0.00 37.39 3.55
2233 8162 2.573462 AGCCACCTCATTGCTTAGAGAA 59.427 45.455 0.00 0.00 33.74 2.87
2235 8164 2.706339 AGCCACCTCATTGCTTAGAG 57.294 50.000 0.00 0.00 29.17 2.43
2236 8165 2.573462 AGAAGCCACCTCATTGCTTAGA 59.427 45.455 0.00 0.00 44.83 2.10
2248 8177 4.451435 GCTCGGTATAAATTAGAAGCCACC 59.549 45.833 0.00 0.00 0.00 4.61
2249 8178 4.451435 GGCTCGGTATAAATTAGAAGCCAC 59.549 45.833 5.24 0.00 38.46 5.01
2250 8179 4.101898 TGGCTCGGTATAAATTAGAAGCCA 59.898 41.667 8.58 8.58 44.99 4.75
2256 8185 6.281405 AGTTCACTGGCTCGGTATAAATTAG 58.719 40.000 0.00 0.00 0.00 1.73
2259 8188 4.755266 AGTTCACTGGCTCGGTATAAAT 57.245 40.909 0.00 0.00 0.00 1.40
2263 8192 5.864418 TTATTAGTTCACTGGCTCGGTAT 57.136 39.130 0.00 0.00 0.00 2.73
2267 8196 7.305474 ACAAAATTTATTAGTTCACTGGCTCG 58.695 34.615 0.00 0.00 0.00 5.03
2285 8214 5.469479 CGTTGGCCTTCTGATAACAAAATT 58.531 37.500 3.32 0.00 0.00 1.82
2289 8219 2.224670 ACCGTTGGCCTTCTGATAACAA 60.225 45.455 3.32 0.00 0.00 2.83
2297 8227 2.030562 CGTCACCGTTGGCCTTCT 59.969 61.111 3.32 0.00 0.00 2.85
2298 8228 3.047877 CCGTCACCGTTGGCCTTC 61.048 66.667 3.32 0.00 0.00 3.46
2300 8230 3.868985 AACCGTCACCGTTGGCCT 61.869 61.111 3.32 0.00 0.00 5.19
2304 8234 1.370587 AACCACAACCGTCACCGTTG 61.371 55.000 7.39 7.39 33.93 4.10
2308 8238 0.463116 ACTGAACCACAACCGTCACC 60.463 55.000 0.00 0.00 0.00 4.02
2309 8239 0.935196 GACTGAACCACAACCGTCAC 59.065 55.000 0.00 0.00 0.00 3.67
2313 8243 0.105964 TCTGGACTGAACCACAACCG 59.894 55.000 0.00 0.00 35.91 4.44
2316 8246 1.208706 TGGTCTGGACTGAACCACAA 58.791 50.000 0.67 0.00 35.91 3.33
2319 8249 1.133915 GGTTTGGTCTGGACTGAACCA 60.134 52.381 21.57 0.00 41.42 3.67
2320 8250 1.133915 TGGTTTGGTCTGGACTGAACC 60.134 52.381 20.61 20.61 41.76 3.62
2325 8255 4.724279 ACTAATTGGTTTGGTCTGGACT 57.276 40.909 0.67 0.00 0.00 3.85
2326 8256 4.083484 CGAACTAATTGGTTTGGTCTGGAC 60.083 45.833 12.89 0.00 0.00 4.02
2328 8258 3.190535 CCGAACTAATTGGTTTGGTCTGG 59.809 47.826 25.69 10.95 42.71 3.86
2331 8261 2.094906 GGCCGAACTAATTGGTTTGGTC 60.095 50.000 30.90 28.03 46.90 4.02
2345 8275 3.734735 GTCATATTCTTACTCGGCCGAAC 59.265 47.826 30.53 15.68 0.00 3.95
2347 8277 2.031420 CGTCATATTCTTACTCGGCCGA 60.031 50.000 29.03 29.03 0.00 5.54
2349 8279 2.059541 GCGTCATATTCTTACTCGGCC 58.940 52.381 0.00 0.00 0.00 6.13
2389 8324 6.699575 ATATCACCTGCTCCACAAATAAAC 57.300 37.500 0.00 0.00 0.00 2.01
2395 8330 2.754552 GCAAATATCACCTGCTCCACAA 59.245 45.455 0.00 0.00 33.20 3.33
2398 8333 1.065491 ACGCAAATATCACCTGCTCCA 60.065 47.619 0.00 0.00 33.82 3.86
2399 8334 1.331756 CACGCAAATATCACCTGCTCC 59.668 52.381 0.00 0.00 33.82 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.