Multiple sequence alignment - TraesCS7A01G070100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G070100 chr7A 100.000 4781 0 0 1 4781 35765248 35770028 0.000000e+00 8829.0
1 TraesCS7A01G070100 chr7A 97.143 35 1 0 4440 4474 35769514 35769548 5.170000e-05 60.2
2 TraesCS7A01G070100 chr7A 97.143 35 1 0 4267 4301 35769687 35769721 5.170000e-05 60.2
3 TraesCS7A01G070100 chr4A 88.233 3102 211 80 879 3901 688100356 688097330 0.000000e+00 3565.0
4 TraesCS7A01G070100 chr4A 85.246 244 17 13 3937 4166 688097350 688097112 2.880000e-57 233.0
5 TraesCS7A01G070100 chr4A 87.425 167 9 7 1 164 688101104 688100947 1.060000e-41 182.0
6 TraesCS7A01G070100 chr4A 87.879 66 7 1 4236 4300 688096712 688096647 5.130000e-10 76.8
7 TraesCS7A01G070100 chr7D 89.195 1740 118 37 2190 3897 35597639 35599340 0.000000e+00 2108.0
8 TraesCS7A01G070100 chr7D 83.430 1720 149 71 577 2197 35595921 35597603 0.000000e+00 1472.0
9 TraesCS7A01G070100 chr7D 92.027 301 11 8 3941 4240 35599325 35599613 1.240000e-110 411.0
10 TraesCS7A01G070100 chr7D 85.032 314 23 15 4481 4781 35599748 35600050 1.010000e-76 298.0
11 TraesCS7A01G070100 chr7D 82.251 231 18 8 18 230 35595286 35595511 1.370000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G070100 chr7A 35765248 35770028 4780 False 2983.133333 8829 98.095333 1 4781 3 chr7A.!!$F1 4780
1 TraesCS7A01G070100 chr4A 688096647 688101104 4457 True 1014.200000 3565 87.195750 1 4300 4 chr4A.!!$R1 4299
2 TraesCS7A01G070100 chr7D 35595286 35600050 4764 False 893.400000 2108 86.387000 18 4781 5 chr7D.!!$F1 4763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 176 0.108615 CACTACAACCAGGAGCCTCG 60.109 60.0 0.0 0.0 0.0 4.63 F
431 477 0.176219 ATCCAAATGCCGCCATGTTG 59.824 50.0 0.0 0.0 0.0 3.33 F
2071 2393 0.179029 CAGGGGAAGACGTGGTGTTT 60.179 55.0 0.0 0.0 0.0 2.83 F
2904 3298 0.460284 ATCGACCGACATTGCTGACC 60.460 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 2113 0.456312 GCTGGTTGTCCTCGTAGTCG 60.456 60.0 0.0 0.0 38.55 4.18 R
2329 2696 1.410004 AGGACGACTTGAACCTGTCA 58.590 50.0 0.0 0.0 33.18 3.58 R
2939 3333 0.036010 CAGTCAGTCACCCACCCATC 60.036 60.0 0.0 0.0 0.00 3.51 R
4460 5233 0.033366 GCACCGGCATTTTGGAACTT 59.967 50.0 0.0 0.0 40.72 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 3.618019 GCGAGTACAAATAACCCCACTCA 60.618 47.826 0.00 0.00 33.60 3.41
93 98 1.271707 ACAAATAACCCCACTCACCGG 60.272 52.381 0.00 0.00 0.00 5.28
117 122 1.083015 CGCACCGTTCGTTTCCTTG 60.083 57.895 0.00 0.00 0.00 3.61
137 142 4.367023 TCCCGTCACTTTCGCCCG 62.367 66.667 0.00 0.00 0.00 6.13
164 172 1.512926 CACACACTACAACCAGGAGC 58.487 55.000 0.00 0.00 0.00 4.70
165 173 0.396811 ACACACTACAACCAGGAGCC 59.603 55.000 0.00 0.00 0.00 4.70
166 174 0.687354 CACACTACAACCAGGAGCCT 59.313 55.000 0.00 0.00 0.00 4.58
167 175 0.977395 ACACTACAACCAGGAGCCTC 59.023 55.000 0.00 0.00 0.00 4.70
168 176 0.108615 CACTACAACCAGGAGCCTCG 60.109 60.000 0.00 0.00 0.00 4.63
169 177 0.251653 ACTACAACCAGGAGCCTCGA 60.252 55.000 0.00 0.00 0.00 4.04
191 212 4.000331 TCTGCCAGTGAAGAAGAAGAAG 58.000 45.455 0.00 0.00 0.00 2.85
192 213 3.072944 CTGCCAGTGAAGAAGAAGAAGG 58.927 50.000 0.00 0.00 0.00 3.46
203 237 3.637229 AGAAGAAGAAGGACACTCACGAA 59.363 43.478 0.00 0.00 0.00 3.85
230 264 2.567049 GGCGACTGTGAGTACGCT 59.433 61.111 0.00 0.00 41.23 5.07
232 266 1.514443 GCGACTGTGAGTACGCTCC 60.514 63.158 0.00 0.00 39.68 4.70
234 268 1.136984 GACTGTGAGTACGCTCCCG 59.863 63.158 0.00 0.00 40.95 5.14
238 272 2.034532 TGAGTACGCTCCCGTCCA 59.965 61.111 0.00 0.00 46.39 4.02
240 274 2.754658 AGTACGCTCCCGTCCAGG 60.755 66.667 0.00 0.00 46.39 4.45
241 275 2.753043 GTACGCTCCCGTCCAGGA 60.753 66.667 0.00 0.00 46.39 3.86
242 276 2.036098 TACGCTCCCGTCCAGGAA 59.964 61.111 0.00 0.00 46.39 3.36
244 278 2.488771 TACGCTCCCGTCCAGGAAGA 62.489 60.000 3.53 0.00 46.39 2.87
245 279 2.646175 CGCTCCCGTCCAGGAAGAA 61.646 63.158 3.53 0.00 45.00 2.52
246 280 1.219393 GCTCCCGTCCAGGAAGAAG 59.781 63.158 3.53 2.50 45.00 2.85
247 281 1.258445 GCTCCCGTCCAGGAAGAAGA 61.258 60.000 3.53 0.00 45.00 2.87
248 282 1.267121 CTCCCGTCCAGGAAGAAGAA 58.733 55.000 3.53 0.00 45.00 2.52
249 283 1.205893 CTCCCGTCCAGGAAGAAGAAG 59.794 57.143 3.53 0.00 45.00 2.85
250 284 1.203137 TCCCGTCCAGGAAGAAGAAGA 60.203 52.381 3.53 0.00 45.00 2.87
251 285 1.623811 CCCGTCCAGGAAGAAGAAGAA 59.376 52.381 3.53 0.00 45.00 2.52
252 286 2.354203 CCCGTCCAGGAAGAAGAAGAAG 60.354 54.545 3.53 0.00 45.00 2.85
253 287 2.563179 CCGTCCAGGAAGAAGAAGAAGA 59.437 50.000 3.53 0.00 45.00 2.87
254 288 3.006967 CCGTCCAGGAAGAAGAAGAAGAA 59.993 47.826 3.53 0.00 45.00 2.52
255 289 4.241681 CGTCCAGGAAGAAGAAGAAGAAG 58.758 47.826 0.00 0.00 0.00 2.85
256 290 4.021894 CGTCCAGGAAGAAGAAGAAGAAGA 60.022 45.833 0.00 0.00 0.00 2.87
257 291 5.509840 CGTCCAGGAAGAAGAAGAAGAAGAA 60.510 44.000 0.00 0.00 0.00 2.52
258 292 5.931724 GTCCAGGAAGAAGAAGAAGAAGAAG 59.068 44.000 0.00 0.00 0.00 2.85
259 293 5.841237 TCCAGGAAGAAGAAGAAGAAGAAGA 59.159 40.000 0.00 0.00 0.00 2.87
260 294 6.327626 TCCAGGAAGAAGAAGAAGAAGAAGAA 59.672 38.462 0.00 0.00 0.00 2.52
261 295 6.650390 CCAGGAAGAAGAAGAAGAAGAAGAAG 59.350 42.308 0.00 0.00 0.00 2.85
262 296 6.147656 CAGGAAGAAGAAGAAGAAGAAGAAGC 59.852 42.308 0.00 0.00 0.00 3.86
263 297 5.994668 GGAAGAAGAAGAAGAAGAAGAAGCA 59.005 40.000 0.00 0.00 0.00 3.91
264 298 6.147656 GGAAGAAGAAGAAGAAGAAGAAGCAG 59.852 42.308 0.00 0.00 0.00 4.24
265 299 6.418057 AGAAGAAGAAGAAGAAGAAGCAGA 57.582 37.500 0.00 0.00 0.00 4.26
266 300 6.825610 AGAAGAAGAAGAAGAAGAAGCAGAA 58.174 36.000 0.00 0.00 0.00 3.02
267 301 6.930722 AGAAGAAGAAGAAGAAGAAGCAGAAG 59.069 38.462 0.00 0.00 0.00 2.85
268 302 6.418057 AGAAGAAGAAGAAGAAGCAGAAGA 57.582 37.500 0.00 0.00 0.00 2.87
269 303 6.825610 AGAAGAAGAAGAAGAAGCAGAAGAA 58.174 36.000 0.00 0.00 0.00 2.52
270 304 6.930722 AGAAGAAGAAGAAGAAGCAGAAGAAG 59.069 38.462 0.00 0.00 0.00 2.85
271 305 6.418057 AGAAGAAGAAGAAGCAGAAGAAGA 57.582 37.500 0.00 0.00 0.00 2.87
272 306 6.825610 AGAAGAAGAAGAAGCAGAAGAAGAA 58.174 36.000 0.00 0.00 0.00 2.52
273 307 6.930722 AGAAGAAGAAGAAGCAGAAGAAGAAG 59.069 38.462 0.00 0.00 0.00 2.85
277 311 4.996758 AGAAGAAGCAGAAGAAGAAGAAGC 59.003 41.667 0.00 0.00 0.00 3.86
284 319 4.754114 GCAGAAGAAGAAGAAGCAGAAGAA 59.246 41.667 0.00 0.00 0.00 2.52
307 342 0.963856 ATCAGACCAGGTACGCACGA 60.964 55.000 0.00 0.00 0.00 4.35
331 366 1.194781 ATATAGTCAGGCCGGCCCAG 61.195 60.000 41.72 32.95 36.58 4.45
368 403 6.622549 GGACGATGGATAGATCGATTTAGTT 58.377 40.000 9.73 0.00 46.72 2.24
370 405 6.315551 ACGATGGATAGATCGATTTAGTTCG 58.684 40.000 9.73 8.36 46.72 3.95
387 423 2.363788 TCGGTCTCAAATCAAGGTCG 57.636 50.000 0.00 0.00 0.00 4.79
392 428 2.484264 GTCTCAAATCAAGGTCGGTTGG 59.516 50.000 0.00 0.00 0.00 3.77
397 433 3.611766 AATCAAGGTCGGTTGGTCTAG 57.388 47.619 0.00 0.00 0.00 2.43
401 437 2.824341 CAAGGTCGGTTGGTCTAGTAGT 59.176 50.000 0.00 0.00 0.00 2.73
406 442 5.367937 AGGTCGGTTGGTCTAGTAGTAGATA 59.632 44.000 10.49 1.13 37.62 1.98
407 443 5.700373 GGTCGGTTGGTCTAGTAGTAGATAG 59.300 48.000 10.49 0.57 37.62 2.08
418 464 9.742144 GTCTAGTAGTAGATAGATCCATCCAAA 57.258 37.037 10.49 0.00 37.62 3.28
426 472 1.076118 ATCCATCCAAATGCCGCCA 60.076 52.632 0.00 0.00 0.00 5.69
431 477 0.176219 ATCCAAATGCCGCCATGTTG 59.824 50.000 0.00 0.00 0.00 3.33
433 479 0.320596 CCAAATGCCGCCATGTTGTT 60.321 50.000 0.00 0.00 0.00 2.83
442 488 2.419990 CCGCCATGTTGTTAGATCCAGA 60.420 50.000 0.00 0.00 0.00 3.86
447 493 5.355596 CCATGTTGTTAGATCCAGAGTCTC 58.644 45.833 0.00 0.00 0.00 3.36
461 516 7.850935 TCCAGAGTCTCTTCCTTTTTACTTA 57.149 36.000 0.00 0.00 0.00 2.24
462 517 8.258850 TCCAGAGTCTCTTCCTTTTTACTTAA 57.741 34.615 0.00 0.00 0.00 1.85
463 518 8.711170 TCCAGAGTCTCTTCCTTTTTACTTAAA 58.289 33.333 0.00 0.00 0.00 1.52
464 519 8.994170 CCAGAGTCTCTTCCTTTTTACTTAAAG 58.006 37.037 0.00 0.00 35.39 1.85
465 520 9.765795 CAGAGTCTCTTCCTTTTTACTTAAAGA 57.234 33.333 0.00 0.00 37.31 2.52
471 526 6.869913 TCTTCCTTTTTACTTAAAGATCGCGA 59.130 34.615 13.09 13.09 37.31 5.87
475 530 2.838386 TACTTAAAGATCGCGAGCGT 57.162 45.000 19.77 13.76 40.74 5.07
476 531 2.838386 ACTTAAAGATCGCGAGCGTA 57.162 45.000 19.77 12.53 40.74 4.42
477 532 3.141002 ACTTAAAGATCGCGAGCGTAA 57.859 42.857 19.77 18.80 40.74 3.18
478 533 3.106672 ACTTAAAGATCGCGAGCGTAAG 58.893 45.455 31.37 31.37 40.74 2.34
479 534 2.838386 TAAAGATCGCGAGCGTAAGT 57.162 45.000 19.77 3.28 40.74 2.24
480 535 1.992170 AAAGATCGCGAGCGTAAGTT 58.008 45.000 19.77 4.15 40.74 2.66
490 545 3.109619 CGAGCGTAAGTTGAGGATCTTC 58.890 50.000 0.00 0.00 41.68 2.87
491 546 3.449632 GAGCGTAAGTTGAGGATCTTCC 58.550 50.000 1.90 0.00 41.68 3.46
492 547 3.100671 AGCGTAAGTTGAGGATCTTCCT 58.899 45.455 1.90 0.00 46.31 3.36
493 548 4.279145 AGCGTAAGTTGAGGATCTTCCTA 58.721 43.478 1.90 0.00 44.33 2.94
571 626 4.615588 ACTGCTAGCTAGGATGGATTTC 57.384 45.455 22.10 2.81 0.00 2.17
575 630 6.070881 ACTGCTAGCTAGGATGGATTTCTATG 60.071 42.308 22.10 5.64 0.00 2.23
591 767 9.134734 GGATTTCTATGTGAACGATCTTAGATC 57.865 37.037 11.92 11.92 33.88 2.75
594 770 6.673106 TCTATGTGAACGATCTTAGATCTGC 58.327 40.000 18.61 9.10 0.00 4.26
619 795 3.228453 ACAGATCCAATGGATTCATGGC 58.772 45.455 16.90 2.20 43.27 4.40
620 796 2.561419 CAGATCCAATGGATTCATGGCC 59.439 50.000 16.90 0.00 43.27 5.36
621 797 1.542915 GATCCAATGGATTCATGGCCG 59.457 52.381 16.90 0.00 43.27 6.13
622 798 0.467844 TCCAATGGATTCATGGCCGG 60.468 55.000 0.00 0.00 33.18 6.13
624 800 1.833934 AATGGATTCATGGCCGGCC 60.834 57.895 39.40 39.40 33.18 6.13
625 801 2.302517 AATGGATTCATGGCCGGCCT 62.303 55.000 43.34 27.34 36.94 5.19
626 802 1.426251 ATGGATTCATGGCCGGCCTA 61.426 55.000 43.34 30.35 36.94 3.93
628 804 1.302832 GATTCATGGCCGGCCTAGG 60.303 63.158 43.34 31.26 36.94 3.02
634 810 1.065997 ATGGCCGGCCTAGGGTTAAT 61.066 55.000 43.34 24.75 36.94 1.40
635 811 1.283381 TGGCCGGCCTAGGGTTAATT 61.283 55.000 43.34 0.00 36.94 1.40
638 814 1.875157 GCCGGCCTAGGGTTAATTACG 60.875 57.143 18.11 0.00 0.00 3.18
640 816 2.546584 CCGGCCTAGGGTTAATTACGAC 60.547 54.545 11.72 0.00 0.00 4.34
641 817 2.363359 CGGCCTAGGGTTAATTACGACT 59.637 50.000 11.72 0.00 0.00 4.18
642 818 3.569701 CGGCCTAGGGTTAATTACGACTA 59.430 47.826 11.72 0.00 0.00 2.59
647 829 6.514705 GCCTAGGGTTAATTACGACTAGACAG 60.515 46.154 11.72 0.00 37.26 3.51
651 833 5.280164 GGTTAATTACGACTAGACAGAGGC 58.720 45.833 0.00 0.00 0.00 4.70
654 836 1.380524 TACGACTAGACAGAGGCAGC 58.619 55.000 0.00 0.00 0.00 5.25
659 841 3.005261 CGACTAGACAGAGGCAGCATAAT 59.995 47.826 0.00 0.00 0.00 1.28
704 886 1.813513 AGCCGAGTTGGATCAAACAG 58.186 50.000 15.42 8.37 42.00 3.16
709 891 2.738846 CGAGTTGGATCAAACAGGTCAG 59.261 50.000 15.42 0.00 32.21 3.51
746 943 7.089538 AGGCTTTGATTTTTGTTTGTTTTTGG 58.910 30.769 0.00 0.00 0.00 3.28
751 948 3.813529 TTTTGTTTGTTTTTGGCGTGG 57.186 38.095 0.00 0.00 0.00 4.94
753 950 0.741221 TGTTTGTTTTTGGCGTGGGC 60.741 50.000 0.00 0.00 38.90 5.36
766 966 4.947147 TGGGCGTTCCACTGCACC 62.947 66.667 0.00 0.00 41.46 5.01
770 970 2.033194 GCGTTCCACTGCACCCTAC 61.033 63.158 0.00 0.00 0.00 3.18
772 972 0.670546 CGTTCCACTGCACCCTACAG 60.671 60.000 0.00 0.00 41.08 2.74
780 980 3.569701 CACTGCACCCTACAGAACAAATT 59.430 43.478 0.00 0.00 38.55 1.82
781 981 3.821033 ACTGCACCCTACAGAACAAATTC 59.179 43.478 0.00 0.00 38.55 2.17
782 982 3.153919 TGCACCCTACAGAACAAATTCC 58.846 45.455 0.00 0.00 35.18 3.01
783 983 3.153919 GCACCCTACAGAACAAATTCCA 58.846 45.455 0.00 0.00 35.18 3.53
784 984 3.763897 GCACCCTACAGAACAAATTCCAT 59.236 43.478 0.00 0.00 35.18 3.41
786 986 5.279456 GCACCCTACAGAACAAATTCCATTT 60.279 40.000 0.00 0.00 35.18 2.32
787 987 6.389906 CACCCTACAGAACAAATTCCATTTC 58.610 40.000 0.00 0.00 35.18 2.17
790 990 6.434028 CCCTACAGAACAAATTCCATTTCTCA 59.566 38.462 0.00 0.00 35.18 3.27
791 991 7.362401 CCCTACAGAACAAATTCCATTTCTCAG 60.362 40.741 0.00 0.00 35.18 3.35
792 992 5.776744 ACAGAACAAATTCCATTTCTCAGC 58.223 37.500 0.00 0.00 35.18 4.26
804 1004 1.779061 TTCTCAGCCAGTTCCACCCC 61.779 60.000 0.00 0.00 0.00 4.95
818 1018 2.816083 CCCCGTGCACGCGATTTA 60.816 61.111 33.17 0.00 38.18 1.40
823 1023 1.120147 CGTGCACGCGATTTAACAGC 61.120 55.000 28.16 3.89 0.00 4.40
825 1025 0.871722 TGCACGCGATTTAACAGCTT 59.128 45.000 15.93 0.00 0.00 3.74
830 1030 5.163844 TGCACGCGATTTAACAGCTTATTAA 60.164 36.000 15.93 0.00 0.00 1.40
833 1033 7.584847 GCACGCGATTTAACAGCTTATTAATTA 59.415 33.333 15.93 0.00 0.00 1.40
834 1034 8.879299 CACGCGATTTAACAGCTTATTAATTAC 58.121 33.333 15.93 0.00 0.00 1.89
835 1035 8.823818 ACGCGATTTAACAGCTTATTAATTACT 58.176 29.630 15.93 0.00 0.00 2.24
847 1047 6.145696 GCTTATTAATTACTACCAGTGCGGAG 59.854 42.308 0.00 0.00 38.63 4.63
848 1048 5.864418 ATTAATTACTACCAGTGCGGAGA 57.136 39.130 0.00 0.00 38.63 3.71
852 1052 1.251527 ACTACCAGTGCGGAGACAGG 61.252 60.000 0.00 0.00 38.63 4.00
853 1053 1.228769 TACCAGTGCGGAGACAGGT 60.229 57.895 0.00 0.00 39.03 4.00
858 1058 1.204704 CAGTGCGGAGACAGGTTCATA 59.795 52.381 0.00 0.00 0.00 2.15
859 1059 2.111384 AGTGCGGAGACAGGTTCATAT 58.889 47.619 0.00 0.00 0.00 1.78
860 1060 3.068165 CAGTGCGGAGACAGGTTCATATA 59.932 47.826 0.00 0.00 0.00 0.86
861 1061 3.898123 AGTGCGGAGACAGGTTCATATAT 59.102 43.478 0.00 0.00 0.00 0.86
862 1062 5.048013 CAGTGCGGAGACAGGTTCATATATA 60.048 44.000 0.00 0.00 0.00 0.86
863 1063 5.047943 AGTGCGGAGACAGGTTCATATATAC 60.048 44.000 0.00 0.00 0.00 1.47
864 1064 5.047943 GTGCGGAGACAGGTTCATATATACT 60.048 44.000 0.00 0.00 0.00 2.12
865 1065 5.183331 TGCGGAGACAGGTTCATATATACTC 59.817 44.000 0.00 0.00 0.00 2.59
866 1066 5.416326 GCGGAGACAGGTTCATATATACTCT 59.584 44.000 0.00 0.00 0.00 3.24
867 1067 6.623986 GCGGAGACAGGTTCATATATACTCTG 60.624 46.154 0.00 0.00 0.00 3.35
868 1068 6.127869 CGGAGACAGGTTCATATATACTCTGG 60.128 46.154 0.00 0.00 0.00 3.86
869 1069 6.722129 GGAGACAGGTTCATATATACTCTGGT 59.278 42.308 0.00 0.00 0.00 4.00
870 1070 7.094118 GGAGACAGGTTCATATATACTCTGGTC 60.094 44.444 0.00 0.00 0.00 4.02
927 1162 5.591099 TCCAGAAAACTTGACTGCAAATTC 58.409 37.500 0.00 0.00 32.73 2.17
934 1169 7.755582 AAACTTGACTGCAAATTCTGTTTAC 57.244 32.000 0.00 0.00 30.43 2.01
936 1171 7.100458 ACTTGACTGCAAATTCTGTTTACTT 57.900 32.000 0.00 0.00 32.73 2.24
1062 1301 2.626780 CCTCAGCGTCACCGACAGA 61.627 63.158 0.00 0.00 35.63 3.41
1072 1311 2.582498 CCGACAGATTCCGGCGTC 60.582 66.667 6.01 0.00 39.22 5.19
1087 1326 1.971695 CGTCCAGGTTTTCAGGGCC 60.972 63.158 0.00 0.00 0.00 5.80
1162 1404 3.614698 CCGCCCCAAAGCAAAGCA 61.615 61.111 0.00 0.00 0.00 3.91
1168 1410 1.541015 CCCCAAAGCAAAGCAGGAAAC 60.541 52.381 0.00 0.00 0.00 2.78
1176 1418 2.951475 AAAGCAGGAAACCGCACCGA 62.951 55.000 0.00 0.00 0.00 4.69
1177 1419 2.746277 GCAGGAAACCGCACCGAT 60.746 61.111 0.00 0.00 0.00 4.18
1178 1420 2.332654 GCAGGAAACCGCACCGATT 61.333 57.895 0.00 0.00 0.00 3.34
1179 1421 1.794222 CAGGAAACCGCACCGATTC 59.206 57.895 0.00 0.00 0.00 2.52
1180 1422 1.740296 AGGAAACCGCACCGATTCG 60.740 57.895 0.00 0.00 0.00 3.34
1181 1423 1.738830 GGAAACCGCACCGATTCGA 60.739 57.895 7.83 0.00 0.00 3.71
1275 1517 4.400961 GCGCCCTGGAGCAAGACT 62.401 66.667 7.05 0.00 40.60 3.24
1328 1570 2.824041 CGCCATGGCCGTAAGCTT 60.824 61.111 30.79 3.48 43.05 3.74
1331 1581 2.404789 CATGGCCGTAAGCTTGCG 59.595 61.111 27.32 27.32 43.05 4.85
1338 1588 2.176792 GTAAGCTTGCGCCACTGC 59.823 61.111 9.86 3.70 36.60 4.40
1344 1594 2.203337 TTGCGCCACTGCCTTCTT 60.203 55.556 4.18 0.00 0.00 2.52
1349 1599 2.014128 GCGCCACTGCCTTCTTATAAA 58.986 47.619 0.00 0.00 0.00 1.40
1359 1609 7.970614 CACTGCCTTCTTATAAATGTTTCTTCC 59.029 37.037 0.00 0.00 0.00 3.46
1542 1814 5.748422 GCTCCTGCACATTTCTGCAAGAC 62.748 52.174 0.00 0.00 46.46 3.01
1554 1826 3.995199 TCTGCAAGACTTTACTGACTGG 58.005 45.455 0.00 0.00 38.67 4.00
1678 1954 1.227002 GGAGAAGGTGACCGATCGC 60.227 63.158 10.32 0.58 34.35 4.58
1682 1958 3.701604 AAGGTGACCGATCGCTCGC 62.702 63.158 14.22 14.22 43.66 5.03
1705 1989 1.537638 TCGATCGATCAAGCTAGCTCC 59.462 52.381 24.40 6.99 0.00 4.70
1720 2004 1.507174 CTCCTCGTCGTCTCAACCC 59.493 63.158 0.00 0.00 0.00 4.11
1721 2005 2.178521 CCTCGTCGTCTCAACCCG 59.821 66.667 0.00 0.00 0.00 5.28
1753 2043 7.862372 TGTTTGATAATTTCAGTGAGTCTTTGC 59.138 33.333 0.00 0.00 35.27 3.68
1754 2044 6.169419 TGATAATTTCAGTGAGTCTTTGCG 57.831 37.500 0.00 0.00 0.00 4.85
1765 2055 1.070134 AGTCTTTGCGTCTGCTGGTTA 59.930 47.619 0.00 0.00 43.34 2.85
1805 2095 4.102367 GGCAAGACCAAGGAGAAGATCTAT 59.898 45.833 0.00 0.00 38.86 1.98
1808 2098 5.149584 AGACCAAGGAGAAGATCTATGGA 57.850 43.478 0.00 0.00 37.19 3.41
1911 2201 0.661020 CGACCTCAACAACAACCCAC 59.339 55.000 0.00 0.00 0.00 4.61
1947 2237 5.337330 CCCTACGGTAAGATCAAGAACAACT 60.337 44.000 0.00 0.00 0.00 3.16
1950 2240 6.585695 ACGGTAAGATCAAGAACAACTAGA 57.414 37.500 0.00 0.00 0.00 2.43
1951 2241 6.622549 ACGGTAAGATCAAGAACAACTAGAG 58.377 40.000 0.00 0.00 0.00 2.43
1952 2242 6.208994 ACGGTAAGATCAAGAACAACTAGAGT 59.791 38.462 0.00 0.00 0.00 3.24
1953 2243 6.528423 CGGTAAGATCAAGAACAACTAGAGTG 59.472 42.308 0.00 0.00 0.00 3.51
1975 2296 9.862371 GAGTGTATCTGAAGAACTTGATTTCTA 57.138 33.333 0.00 0.00 34.60 2.10
2033 2355 2.726274 GTGCTGCCATGCTATGCC 59.274 61.111 0.00 0.00 0.00 4.40
2040 2362 2.896854 CATGCTATGCCGTGCCGT 60.897 61.111 0.00 0.00 0.00 5.68
2071 2393 0.179029 CAGGGGAAGACGTGGTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
2170 2495 2.611224 GGCCAAGGTTTTGCATCTTCTG 60.611 50.000 0.00 0.00 32.79 3.02
2184 2509 9.773328 TTTGCATCTTCTGAAACTTTATATTCG 57.227 29.630 0.00 0.00 0.00 3.34
2217 2584 1.035923 TTTTGCGGTTCATTCTGGCA 58.964 45.000 0.00 0.00 0.00 4.92
2218 2585 0.597568 TTTGCGGTTCATTCTGGCAG 59.402 50.000 8.58 8.58 34.76 4.85
2219 2586 1.865788 TTGCGGTTCATTCTGGCAGC 61.866 55.000 10.34 0.00 34.76 5.25
2240 2607 5.346822 CAGCCTGAATTTTACATTGCAACTC 59.653 40.000 0.00 0.00 0.00 3.01
2440 2807 2.031163 GCCGACAAGGTGCTGACT 59.969 61.111 0.00 0.00 43.70 3.41
2455 2822 2.672098 CTGACTGTGAGCCCCTACTAT 58.328 52.381 0.00 0.00 0.00 2.12
2458 2825 1.343478 ACTGTGAGCCCCTACTATGCT 60.343 52.381 0.00 0.00 38.24 3.79
2467 2834 2.225142 CCCCTACTATGCTGAGGAGCTA 60.225 54.545 0.00 0.00 46.39 3.32
2666 3041 1.899437 GATCGCTGGTTCTGGGTGGA 61.899 60.000 0.00 0.00 0.00 4.02
2673 3048 1.630369 TGGTTCTGGGTGGATTCTGAG 59.370 52.381 0.00 0.00 0.00 3.35
2674 3049 1.630878 GGTTCTGGGTGGATTCTGAGT 59.369 52.381 0.00 0.00 0.00 3.41
2675 3050 2.040412 GGTTCTGGGTGGATTCTGAGTT 59.960 50.000 0.00 0.00 0.00 3.01
2676 3051 3.339141 GTTCTGGGTGGATTCTGAGTTC 58.661 50.000 0.00 0.00 0.00 3.01
2677 3052 2.907892 TCTGGGTGGATTCTGAGTTCT 58.092 47.619 0.00 0.00 0.00 3.01
2678 3053 2.568956 TCTGGGTGGATTCTGAGTTCTG 59.431 50.000 0.00 0.00 0.00 3.02
2679 3054 2.568956 CTGGGTGGATTCTGAGTTCTGA 59.431 50.000 0.00 0.00 0.00 3.27
2680 3055 2.303022 TGGGTGGATTCTGAGTTCTGAC 59.697 50.000 0.00 0.00 0.00 3.51
2681 3056 2.303022 GGGTGGATTCTGAGTTCTGACA 59.697 50.000 0.00 0.00 0.00 3.58
2885 3260 2.014857 CAGATCGTTCTCCTGGTACGA 58.985 52.381 18.19 18.19 46.71 3.43
2893 3287 0.812811 CTCCTGGTACGATCGACCGA 60.813 60.000 24.34 15.57 40.09 4.69
2903 3297 0.924090 GATCGACCGACATTGCTGAC 59.076 55.000 0.00 0.00 0.00 3.51
2904 3298 0.460284 ATCGACCGACATTGCTGACC 60.460 55.000 0.00 0.00 0.00 4.02
2906 3300 2.047274 ACCGACATTGCTGACCCG 60.047 61.111 0.00 0.00 0.00 5.28
2908 3302 1.671054 CCGACATTGCTGACCCGTT 60.671 57.895 0.00 0.00 0.00 4.44
2909 3303 1.635663 CCGACATTGCTGACCCGTTC 61.636 60.000 0.00 0.00 0.00 3.95
2932 3326 3.063485 GGAAAATCTCCTGATAGCTCGC 58.937 50.000 0.00 0.00 41.61 5.03
2933 3327 2.829741 AAATCTCCTGATAGCTCGCC 57.170 50.000 0.00 0.00 31.70 5.54
2934 3328 0.600557 AATCTCCTGATAGCTCGCCG 59.399 55.000 0.00 0.00 31.70 6.46
2935 3329 0.538516 ATCTCCTGATAGCTCGCCGT 60.539 55.000 0.00 0.00 0.00 5.68
2936 3330 1.007964 CTCCTGATAGCTCGCCGTG 60.008 63.158 0.00 0.00 0.00 4.94
2937 3331 2.028190 CCTGATAGCTCGCCGTGG 59.972 66.667 0.00 0.00 0.00 4.94
2938 3332 2.028190 CTGATAGCTCGCCGTGGG 59.972 66.667 0.00 0.00 0.00 4.61
2939 3333 3.506059 CTGATAGCTCGCCGTGGGG 62.506 68.421 0.00 0.00 0.00 4.96
2940 3334 3.224324 GATAGCTCGCCGTGGGGA 61.224 66.667 5.48 5.48 34.06 4.81
2941 3335 2.524394 ATAGCTCGCCGTGGGGAT 60.524 61.111 6.08 0.00 36.50 3.85
2942 3336 2.771763 GATAGCTCGCCGTGGGGATG 62.772 65.000 6.08 2.66 36.50 3.51
2950 3344 4.424711 CGTGGGGATGGGTGGGTG 62.425 72.222 0.00 0.00 0.00 4.61
2951 3345 2.938798 GTGGGGATGGGTGGGTGA 60.939 66.667 0.00 0.00 0.00 4.02
2952 3346 2.938798 TGGGGATGGGTGGGTGAC 60.939 66.667 0.00 0.00 0.00 3.67
2953 3347 2.614013 GGGGATGGGTGGGTGACT 60.614 66.667 0.00 0.00 0.00 3.41
2956 3350 1.299976 GGATGGGTGGGTGACTGAC 59.700 63.158 0.00 0.00 0.00 3.51
3151 3545 1.383664 CCTCATCCAGCTCCAGGGA 60.384 63.158 0.00 0.00 37.64 4.20
3183 3577 3.453559 CGGTAAACGCATCCTCCTT 57.546 52.632 0.00 0.00 34.82 3.36
3184 3578 1.287425 CGGTAAACGCATCCTCCTTC 58.713 55.000 0.00 0.00 34.82 3.46
3185 3579 1.404986 CGGTAAACGCATCCTCCTTCA 60.405 52.381 0.00 0.00 34.82 3.02
3186 3580 2.280628 GGTAAACGCATCCTCCTTCAG 58.719 52.381 0.00 0.00 0.00 3.02
3187 3581 2.354805 GGTAAACGCATCCTCCTTCAGT 60.355 50.000 0.00 0.00 0.00 3.41
3199 3593 1.349026 TCCTTCAGTCCTTCTTGCCAG 59.651 52.381 0.00 0.00 0.00 4.85
3205 3599 1.349357 AGTCCTTCTTGCCAGTTCCTC 59.651 52.381 0.00 0.00 0.00 3.71
3213 3607 0.768221 TGCCAGTTCCTCACCTCCTT 60.768 55.000 0.00 0.00 0.00 3.36
3214 3608 0.402121 GCCAGTTCCTCACCTCCTTT 59.598 55.000 0.00 0.00 0.00 3.11
3265 3664 1.372872 AAATTTTCAGCCGTGCGCC 60.373 52.632 4.18 0.00 38.78 6.53
3347 3746 4.496670 GCCTCAGCGTTGACGTAT 57.503 55.556 0.00 0.00 42.22 3.06
3360 3759 2.230660 TGACGTATGCTCATCGATCCT 58.769 47.619 0.00 0.00 0.00 3.24
3361 3760 2.226674 TGACGTATGCTCATCGATCCTC 59.773 50.000 0.00 0.00 0.00 3.71
3363 3762 2.887783 ACGTATGCTCATCGATCCTCTT 59.112 45.455 0.00 0.00 0.00 2.85
3364 3763 3.240884 CGTATGCTCATCGATCCTCTTG 58.759 50.000 0.00 0.00 0.00 3.02
3365 3764 3.304996 CGTATGCTCATCGATCCTCTTGT 60.305 47.826 0.00 0.00 0.00 3.16
3366 3765 4.083271 CGTATGCTCATCGATCCTCTTGTA 60.083 45.833 0.00 0.00 0.00 2.41
3367 3766 5.392487 CGTATGCTCATCGATCCTCTTGTAT 60.392 44.000 0.00 0.00 0.00 2.29
3369 3768 5.378292 TGCTCATCGATCCTCTTGTATAC 57.622 43.478 0.00 0.00 0.00 1.47
3370 3769 4.827284 TGCTCATCGATCCTCTTGTATACA 59.173 41.667 0.08 0.08 0.00 2.29
3372 3771 6.015095 TGCTCATCGATCCTCTTGTATACATT 60.015 38.462 6.36 0.00 0.00 2.71
3373 3772 6.529829 GCTCATCGATCCTCTTGTATACATTC 59.470 42.308 6.36 0.00 0.00 2.67
3374 3773 7.524717 TCATCGATCCTCTTGTATACATTCA 57.475 36.000 6.36 0.00 0.00 2.57
3394 3793 5.509716 TCATTCATCTTGTTCATCATGGC 57.490 39.130 0.00 0.00 0.00 4.40
3402 3801 1.279846 TGTTCATCATGGCAGCTCAGA 59.720 47.619 0.00 0.00 0.00 3.27
3414 3813 2.867368 GCAGCTCAGACAGATCATGAAG 59.133 50.000 0.00 0.00 0.00 3.02
3418 3817 3.369261 GCTCAGACAGATCATGAAGTGGT 60.369 47.826 0.00 0.00 0.00 4.16
3419 3818 4.182339 CTCAGACAGATCATGAAGTGGTG 58.818 47.826 0.00 3.11 0.00 4.17
3420 3819 2.676839 CAGACAGATCATGAAGTGGTGC 59.323 50.000 0.00 0.00 0.00 5.01
3421 3820 2.303890 AGACAGATCATGAAGTGGTGCA 59.696 45.455 0.00 0.00 0.00 4.57
3480 3881 0.666577 CCGACGTGAAGAAGGTGGTC 60.667 60.000 0.00 0.00 0.00 4.02
3587 3989 2.561858 GGAAGGTAAGTCGTCTCTGGTT 59.438 50.000 0.00 0.00 0.00 3.67
3588 3990 3.367190 GGAAGGTAAGTCGTCTCTGGTTC 60.367 52.174 0.00 0.00 0.00 3.62
3591 3998 2.557490 GGTAAGTCGTCTCTGGTTCAGT 59.443 50.000 0.00 0.00 32.61 3.41
3597 4004 2.094700 TCGTCTCTGGTTCAGTATGCAC 60.095 50.000 0.00 0.00 34.76 4.57
3600 4007 3.929610 GTCTCTGGTTCAGTATGCACTTC 59.070 47.826 0.00 0.00 31.17 3.01
3602 4009 2.906389 TCTGGTTCAGTATGCACTTCCT 59.094 45.455 0.00 0.00 31.17 3.36
3603 4010 3.005554 CTGGTTCAGTATGCACTTCCTG 58.994 50.000 0.00 0.00 31.17 3.86
3618 4025 4.752101 CACTTCCTGGAACAACTAAGAGTG 59.248 45.833 4.68 5.07 38.70 3.51
3622 4029 4.040461 TCCTGGAACAACTAAGAGTGAAGG 59.960 45.833 0.00 0.00 38.70 3.46
3623 4030 4.319177 CTGGAACAACTAAGAGTGAAGGG 58.681 47.826 0.00 0.00 38.70 3.95
3624 4031 3.075148 GGAACAACTAAGAGTGAAGGGC 58.925 50.000 0.00 0.00 0.00 5.19
3658 4082 0.466007 ATGGTGGCTTGCGCATATGA 60.466 50.000 12.75 0.00 38.10 2.15
3708 4132 1.303643 GCTTCTGGAACTGGGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
3798 4222 4.160252 CCCTGAAGAGAGAAAGAAGAGGAG 59.840 50.000 0.00 0.00 0.00 3.69
3799 4223 4.381932 CCTGAAGAGAGAAAGAAGAGGAGC 60.382 50.000 0.00 0.00 0.00 4.70
3887 4311 6.895756 TGTAGTGAAGAAGGGCCGATATATAT 59.104 38.462 0.00 0.00 0.00 0.86
4031 4464 0.404426 AAGGAGTTAGGGGTTGTGCC 59.596 55.000 0.00 0.00 0.00 5.01
4033 4466 1.203389 AGGAGTTAGGGGTTGTGCCTA 60.203 52.381 0.00 0.00 37.43 3.93
4252 5024 1.363145 CCGGAATCGCCAGCGTAAAA 61.363 55.000 12.32 0.00 40.74 1.52
4253 5025 0.247537 CGGAATCGCCAGCGTAAAAC 60.248 55.000 12.32 0.00 40.74 2.43
4258 5030 0.032952 TCGCCAGCGTAAAACTCACT 59.967 50.000 12.32 0.00 40.74 3.41
4294 5067 5.596763 AGGAATACCTAGGTGTAAGTTCCA 58.403 41.667 27.78 10.98 45.83 3.53
4295 5068 6.027482 AGGAATACCTAGGTGTAAGTTCCAA 58.973 40.000 27.78 10.42 45.83 3.53
4296 5069 6.502863 AGGAATACCTAGGTGTAAGTTCCAAA 59.497 38.462 27.78 10.02 45.83 3.28
4297 5070 7.017850 AGGAATACCTAGGTGTAAGTTCCAAAA 59.982 37.037 27.78 9.86 45.83 2.44
4298 5071 7.832685 GGAATACCTAGGTGTAAGTTCCAAAAT 59.167 37.037 25.33 1.72 35.22 1.82
4299 5072 8.575649 AATACCTAGGTGTAAGTTCCAAAATG 57.424 34.615 25.33 0.00 0.00 2.32
4300 5073 4.765339 ACCTAGGTGTAAGTTCCAAAATGC 59.235 41.667 15.42 0.00 0.00 3.56
4301 5074 4.764823 CCTAGGTGTAAGTTCCAAAATGCA 59.235 41.667 0.00 0.00 0.00 3.96
4302 5075 5.242838 CCTAGGTGTAAGTTCCAAAATGCAA 59.757 40.000 0.00 0.00 0.00 4.08
4303 5076 5.606348 AGGTGTAAGTTCCAAAATGCAAA 57.394 34.783 0.00 0.00 0.00 3.68
4304 5077 5.983540 AGGTGTAAGTTCCAAAATGCAAAA 58.016 33.333 0.00 0.00 0.00 2.44
4305 5078 5.815222 AGGTGTAAGTTCCAAAATGCAAAAC 59.185 36.000 0.00 0.00 0.00 2.43
4306 5079 5.582665 GGTGTAAGTTCCAAAATGCAAAACA 59.417 36.000 0.00 0.00 0.00 2.83
4307 5080 6.092807 GGTGTAAGTTCCAAAATGCAAAACAA 59.907 34.615 0.00 0.00 0.00 2.83
4308 5081 7.361286 GGTGTAAGTTCCAAAATGCAAAACAAA 60.361 33.333 0.00 0.00 0.00 2.83
4309 5082 7.691877 GTGTAAGTTCCAAAATGCAAAACAAAG 59.308 33.333 0.00 0.00 0.00 2.77
4310 5083 5.816449 AGTTCCAAAATGCAAAACAAAGG 57.184 34.783 0.00 0.00 0.00 3.11
4311 5084 5.495640 AGTTCCAAAATGCAAAACAAAGGA 58.504 33.333 0.00 0.00 0.00 3.36
4312 5085 5.942826 AGTTCCAAAATGCAAAACAAAGGAA 59.057 32.000 0.00 0.00 0.00 3.36
4313 5086 6.602803 AGTTCCAAAATGCAAAACAAAGGAAT 59.397 30.769 0.00 0.00 33.36 3.01
4314 5087 7.772757 AGTTCCAAAATGCAAAACAAAGGAATA 59.227 29.630 0.00 0.00 33.36 1.75
4315 5088 7.489574 TCCAAAATGCAAAACAAAGGAATAC 57.510 32.000 0.00 0.00 0.00 1.89
4316 5089 6.484977 TCCAAAATGCAAAACAAAGGAATACC 59.515 34.615 0.00 0.00 0.00 2.73
4333 5106 6.070366 AGGAATACCTAGGTGTAAGTTCCAAC 60.070 42.308 27.78 13.97 45.83 3.77
4341 5114 1.202830 TGTAAGTTCCAACATGGCGGT 60.203 47.619 0.00 0.00 37.47 5.68
4365 5138 0.322366 TGACCGCCAAGATCAATGCA 60.322 50.000 0.00 0.00 0.00 3.96
4366 5139 0.099436 GACCGCCAAGATCAATGCAC 59.901 55.000 0.00 0.00 0.00 4.57
4367 5140 0.322816 ACCGCCAAGATCAATGCACT 60.323 50.000 0.00 0.00 0.00 4.40
4368 5141 0.099968 CCGCCAAGATCAATGCACTG 59.900 55.000 0.00 0.00 0.00 3.66
4371 5144 1.469251 GCCAAGATCAATGCACTGCAG 60.469 52.381 13.48 13.48 43.65 4.41
4372 5145 1.816835 CCAAGATCAATGCACTGCAGT 59.183 47.619 15.25 15.25 43.65 4.40
4373 5146 2.230508 CCAAGATCAATGCACTGCAGTT 59.769 45.455 18.94 0.00 43.65 3.16
4374 5147 3.242518 CAAGATCAATGCACTGCAGTTG 58.757 45.455 18.94 13.48 43.65 3.16
4375 5148 2.786777 AGATCAATGCACTGCAGTTGA 58.213 42.857 18.94 18.74 43.65 3.18
4376 5149 3.151554 AGATCAATGCACTGCAGTTGAA 58.848 40.909 18.94 8.07 43.65 2.69
4377 5150 3.762288 AGATCAATGCACTGCAGTTGAAT 59.238 39.130 18.94 10.19 43.65 2.57
4378 5151 3.564235 TCAATGCACTGCAGTTGAATC 57.436 42.857 18.94 4.81 43.65 2.52
4379 5152 2.095617 TCAATGCACTGCAGTTGAATCG 60.096 45.455 18.94 5.88 43.65 3.34
4380 5153 0.169672 ATGCACTGCAGTTGAATCGC 59.830 50.000 18.94 16.91 43.65 4.58
4381 5154 1.154150 GCACTGCAGTTGAATCGCC 60.154 57.895 18.94 0.00 0.00 5.54
4383 5156 0.592637 CACTGCAGTTGAATCGCCAA 59.407 50.000 18.94 0.00 0.00 4.52
4384 5157 0.593128 ACTGCAGTTGAATCGCCAAC 59.407 50.000 15.25 0.00 44.92 3.77
4393 5166 5.416011 GTTGAATCGCCAACGTAAAATTC 57.584 39.130 0.00 0.00 41.18 2.17
4394 5167 3.738399 TGAATCGCCAACGTAAAATTCG 58.262 40.909 0.00 0.00 41.18 3.34
4395 5168 2.168201 ATCGCCAACGTAAAATTCGC 57.832 45.000 0.00 0.00 41.18 4.70
4396 5169 0.166379 TCGCCAACGTAAAATTCGCC 59.834 50.000 0.00 0.00 41.18 5.54
4397 5170 1.123559 CGCCAACGTAAAATTCGCCG 61.124 55.000 0.00 0.00 33.53 6.46
4398 5171 0.110101 GCCAACGTAAAATTCGCCGT 60.110 50.000 0.00 0.00 34.56 5.68
4399 5172 1.873295 CCAACGTAAAATTCGCCGTC 58.127 50.000 0.00 0.00 32.30 4.79
4400 5173 1.461897 CCAACGTAAAATTCGCCGTCT 59.538 47.619 0.00 0.00 32.30 4.18
4401 5174 2.096119 CCAACGTAAAATTCGCCGTCTT 60.096 45.455 0.00 0.00 32.30 3.01
4402 5175 2.867456 ACGTAAAATTCGCCGTCTTG 57.133 45.000 0.00 0.00 0.00 3.02
4403 5176 1.136169 ACGTAAAATTCGCCGTCTTGC 60.136 47.619 0.00 0.00 0.00 4.01
4404 5177 1.136197 CGTAAAATTCGCCGTCTTGCA 60.136 47.619 0.00 0.00 0.00 4.08
4405 5178 2.663334 CGTAAAATTCGCCGTCTTGCAA 60.663 45.455 0.00 0.00 0.00 4.08
4406 5179 2.723124 AAAATTCGCCGTCTTGCAAT 57.277 40.000 0.00 0.00 0.00 3.56
4407 5180 1.981254 AAATTCGCCGTCTTGCAATG 58.019 45.000 0.00 0.00 0.00 2.82
4408 5181 1.164411 AATTCGCCGTCTTGCAATGA 58.836 45.000 0.00 0.00 0.00 2.57
4409 5182 1.164411 ATTCGCCGTCTTGCAATGAA 58.836 45.000 0.00 0.00 0.00 2.57
4410 5183 0.516877 TTCGCCGTCTTGCAATGAAG 59.483 50.000 0.00 2.39 0.00 3.02
4411 5184 1.135315 CGCCGTCTTGCAATGAAGG 59.865 57.895 19.11 19.11 41.45 3.46
4412 5185 1.298157 CGCCGTCTTGCAATGAAGGA 61.298 55.000 24.12 7.85 41.12 3.36
4413 5186 0.881118 GCCGTCTTGCAATGAAGGAA 59.119 50.000 24.12 0.00 41.12 3.36
4414 5187 1.474077 GCCGTCTTGCAATGAAGGAAT 59.526 47.619 24.12 0.00 41.12 3.01
4415 5188 2.682856 GCCGTCTTGCAATGAAGGAATA 59.317 45.455 24.12 0.00 41.12 1.75
4416 5189 3.487544 GCCGTCTTGCAATGAAGGAATAC 60.488 47.826 24.12 10.46 41.12 1.89
4417 5190 3.065371 CCGTCTTGCAATGAAGGAATACC 59.935 47.826 18.84 0.00 41.12 2.73
4418 5191 3.242413 CGTCTTGCAATGAAGGAATACCG 60.242 47.826 0.00 0.00 41.83 4.02
4419 5192 3.065371 GTCTTGCAATGAAGGAATACCGG 59.935 47.826 0.00 0.00 41.83 5.28
4420 5193 2.799126 TGCAATGAAGGAATACCGGT 57.201 45.000 13.98 13.98 41.83 5.28
4421 5194 2.364632 TGCAATGAAGGAATACCGGTG 58.635 47.619 19.93 0.00 41.83 4.94
4422 5195 2.290641 TGCAATGAAGGAATACCGGTGT 60.291 45.455 19.93 8.05 41.83 4.16
4423 5196 3.055021 TGCAATGAAGGAATACCGGTGTA 60.055 43.478 19.93 0.00 41.83 2.90
4424 5197 3.942748 GCAATGAAGGAATACCGGTGTAA 59.057 43.478 19.93 0.00 41.83 2.41
4425 5198 4.035208 GCAATGAAGGAATACCGGTGTAAG 59.965 45.833 19.93 0.00 41.83 2.34
4426 5199 5.183228 CAATGAAGGAATACCGGTGTAAGT 58.817 41.667 19.93 0.00 41.83 2.24
4427 5200 4.895668 TGAAGGAATACCGGTGTAAGTT 57.104 40.909 19.93 5.09 41.83 2.66
4428 5201 4.824289 TGAAGGAATACCGGTGTAAGTTC 58.176 43.478 19.93 14.71 41.83 3.01
4429 5202 3.900966 AGGAATACCGGTGTAAGTTCC 57.099 47.619 19.93 20.33 41.83 3.62
4430 5203 3.175594 AGGAATACCGGTGTAAGTTCCA 58.824 45.455 25.55 5.57 38.07 3.53
4431 5204 3.583966 AGGAATACCGGTGTAAGTTCCAA 59.416 43.478 25.55 4.95 38.07 3.53
4432 5205 4.041938 AGGAATACCGGTGTAAGTTCCAAA 59.958 41.667 25.55 4.51 38.07 3.28
4433 5206 4.761227 GGAATACCGGTGTAAGTTCCAAAA 59.239 41.667 19.93 0.00 36.64 2.44
4434 5207 5.416639 GGAATACCGGTGTAAGTTCCAAAAT 59.583 40.000 19.93 0.00 36.64 1.82
4435 5208 5.890424 ATACCGGTGTAAGTTCCAAAATG 57.110 39.130 19.93 0.00 0.00 2.32
4436 5209 2.295070 ACCGGTGTAAGTTCCAAAATGC 59.705 45.455 6.12 0.00 0.00 3.56
4437 5210 2.294791 CCGGTGTAAGTTCCAAAATGCA 59.705 45.455 0.00 0.00 0.00 3.96
4438 5211 3.243569 CCGGTGTAAGTTCCAAAATGCAA 60.244 43.478 0.00 0.00 0.00 4.08
4439 5212 4.363999 CGGTGTAAGTTCCAAAATGCAAA 58.636 39.130 0.00 0.00 0.00 3.68
4440 5213 4.806247 CGGTGTAAGTTCCAAAATGCAAAA 59.194 37.500 0.00 0.00 0.00 2.44
4441 5214 5.276631 CGGTGTAAGTTCCAAAATGCAAAAC 60.277 40.000 0.00 0.00 0.00 2.43
4442 5215 5.276631 GGTGTAAGTTCCAAAATGCAAAACG 60.277 40.000 0.00 0.00 0.00 3.60
4443 5216 5.517054 GTGTAAGTTCCAAAATGCAAAACGA 59.483 36.000 0.00 0.00 0.00 3.85
4444 5217 6.035112 GTGTAAGTTCCAAAATGCAAAACGAA 59.965 34.615 0.00 0.00 0.00 3.85
4445 5218 5.717038 AAGTTCCAAAATGCAAAACGAAG 57.283 34.783 0.00 0.00 0.00 3.79
4446 5219 4.119136 AGTTCCAAAATGCAAAACGAAGG 58.881 39.130 0.00 0.00 0.00 3.46
4447 5220 4.116238 GTTCCAAAATGCAAAACGAAGGA 58.884 39.130 0.00 0.00 0.00 3.36
4448 5221 4.392921 TCCAAAATGCAAAACGAAGGAA 57.607 36.364 0.00 0.00 0.00 3.36
4449 5222 4.954875 TCCAAAATGCAAAACGAAGGAAT 58.045 34.783 0.00 0.00 0.00 3.01
4450 5223 6.090483 TCCAAAATGCAAAACGAAGGAATA 57.910 33.333 0.00 0.00 0.00 1.75
4451 5224 5.923684 TCCAAAATGCAAAACGAAGGAATAC 59.076 36.000 0.00 0.00 0.00 1.89
4452 5225 5.120053 CCAAAATGCAAAACGAAGGAATACC 59.880 40.000 0.00 0.00 0.00 2.73
4467 5240 5.596763 AGGAATACCTAGGTGTAAGTTCCA 58.403 41.667 27.78 10.98 45.83 3.53
4468 5241 6.027482 AGGAATACCTAGGTGTAAGTTCCAA 58.973 40.000 27.78 10.42 45.83 3.53
4469 5242 6.502863 AGGAATACCTAGGTGTAAGTTCCAAA 59.497 38.462 27.78 10.02 45.83 3.28
4470 5243 7.017850 AGGAATACCTAGGTGTAAGTTCCAAAA 59.982 37.037 27.78 9.86 45.83 2.44
4471 5244 7.832685 GGAATACCTAGGTGTAAGTTCCAAAAT 59.167 37.037 25.33 1.72 35.22 1.82
4472 5245 8.575649 AATACCTAGGTGTAAGTTCCAAAATG 57.424 34.615 25.33 0.00 0.00 2.32
4473 5246 4.765339 ACCTAGGTGTAAGTTCCAAAATGC 59.235 41.667 15.42 0.00 0.00 3.56
4474 5247 4.157840 CCTAGGTGTAAGTTCCAAAATGCC 59.842 45.833 0.00 0.00 0.00 4.40
4475 5248 2.556622 AGGTGTAAGTTCCAAAATGCCG 59.443 45.455 0.00 0.00 0.00 5.69
4476 5249 2.352323 GGTGTAAGTTCCAAAATGCCGG 60.352 50.000 0.00 0.00 0.00 6.13
4477 5250 2.295070 GTGTAAGTTCCAAAATGCCGGT 59.705 45.455 1.90 0.00 0.00 5.28
4478 5251 2.294791 TGTAAGTTCCAAAATGCCGGTG 59.705 45.455 1.90 0.00 0.00 4.94
4479 5252 0.033366 AAGTTCCAAAATGCCGGTGC 59.967 50.000 1.90 0.00 38.26 5.01
4517 5290 1.291132 TGCGACACAACAAATGACGA 58.709 45.000 0.00 0.00 0.00 4.20
4526 5299 2.884639 CAACAAATGACGAAAGGGGAGT 59.115 45.455 0.00 0.00 0.00 3.85
4541 5314 2.423947 GGGGAGTGATCATGGCTGAAAT 60.424 50.000 0.00 0.00 34.37 2.17
4544 5317 4.445448 GGGAGTGATCATGGCTGAAATAGT 60.445 45.833 0.00 0.00 34.37 2.12
4551 5324 6.660521 TGATCATGGCTGAAATAGTTTCACTT 59.339 34.615 0.00 0.00 44.21 3.16
4574 5347 4.543590 TTTCCTTGCTTGAAACCAACAA 57.456 36.364 0.00 0.00 0.00 2.83
4577 5350 5.452078 TCCTTGCTTGAAACCAACAATAG 57.548 39.130 0.00 0.00 0.00 1.73
4608 5381 2.044135 GTTTGCTGTTAAACTGCGAGC 58.956 47.619 0.00 0.00 44.63 5.03
4611 5384 0.875059 GCTGTTAAACTGCGAGCCTT 59.125 50.000 0.00 0.00 33.54 4.35
4612 5385 1.400242 GCTGTTAAACTGCGAGCCTTG 60.400 52.381 0.00 0.00 33.54 3.61
4613 5386 0.591170 TGTTAAACTGCGAGCCTTGC 59.409 50.000 0.00 0.00 0.00 4.01
4614 5387 0.591170 GTTAAACTGCGAGCCTTGCA 59.409 50.000 6.44 6.44 40.70 4.08
4657 5430 2.114638 TGTGCAACAGCCAACTTCC 58.885 52.632 0.00 0.00 45.67 3.46
4658 5431 0.682532 TGTGCAACAGCCAACTTCCA 60.683 50.000 0.00 0.00 45.67 3.53
4659 5432 0.675633 GTGCAACAGCCAACTTCCAT 59.324 50.000 0.00 0.00 36.32 3.41
4660 5433 1.069049 GTGCAACAGCCAACTTCCATT 59.931 47.619 0.00 0.00 36.32 3.16
4663 5436 2.758009 CAACAGCCAACTTCCATTTGG 58.242 47.619 0.00 0.00 45.60 3.28
4665 5438 2.893424 ACAGCCAACTTCCATTTGGAT 58.107 42.857 5.28 0.00 45.69 3.41
4666 5439 3.242011 ACAGCCAACTTCCATTTGGATT 58.758 40.909 5.28 0.00 45.69 3.01
4667 5440 4.415596 ACAGCCAACTTCCATTTGGATTA 58.584 39.130 5.28 0.00 45.69 1.75
4668 5441 4.463891 ACAGCCAACTTCCATTTGGATTAG 59.536 41.667 5.28 0.00 45.69 1.73
4671 5444 5.595952 AGCCAACTTCCATTTGGATTAGATC 59.404 40.000 5.28 0.00 45.69 2.75
4672 5445 5.360714 GCCAACTTCCATTTGGATTAGATCA 59.639 40.000 5.28 0.00 45.69 2.92
4673 5446 6.041296 GCCAACTTCCATTTGGATTAGATCAT 59.959 38.462 5.28 0.00 45.69 2.45
4674 5447 7.431249 CCAACTTCCATTTGGATTAGATCATG 58.569 38.462 0.00 0.00 45.69 3.07
4728 5510 1.664659 GCATGATGCAGATATCGCTCC 59.335 52.381 13.36 10.67 44.26 4.70
4770 5552 6.952773 AGTACATGTTTACTGAAAAGGCAA 57.047 33.333 2.30 0.00 30.75 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.912907 AATACCCGCTCCGCTCCG 61.913 66.667 0.00 0.00 0.00 4.63
117 122 1.737008 GGCGAAAGTGACGGGACTC 60.737 63.158 0.00 0.00 0.00 3.36
138 143 3.185299 TTGTAGTGTGTGGGGCGGG 62.185 63.158 0.00 0.00 0.00 6.13
139 144 1.964373 GTTGTAGTGTGTGGGGCGG 60.964 63.158 0.00 0.00 0.00 6.13
140 145 1.964373 GGTTGTAGTGTGTGGGGCG 60.964 63.158 0.00 0.00 0.00 6.13
149 154 0.108615 CGAGGCTCCTGGTTGTAGTG 60.109 60.000 9.32 0.00 0.00 2.74
164 172 0.820226 TCTTCACTGGCAGATCGAGG 59.180 55.000 23.66 14.24 0.00 4.63
165 173 2.165234 TCTTCTTCACTGGCAGATCGAG 59.835 50.000 23.66 12.76 0.00 4.04
166 174 2.171003 TCTTCTTCACTGGCAGATCGA 58.829 47.619 23.66 11.56 0.00 3.59
167 175 2.662006 TCTTCTTCACTGGCAGATCG 57.338 50.000 23.66 9.22 0.00 3.69
168 176 4.199432 TCTTCTTCTTCACTGGCAGATC 57.801 45.455 23.66 0.00 0.00 2.75
169 177 4.565236 CCTTCTTCTTCTTCACTGGCAGAT 60.565 45.833 23.66 2.23 0.00 2.90
191 212 2.100631 CGGGCATTCGTGAGTGTCC 61.101 63.158 5.97 5.97 39.16 4.02
192 213 2.100631 CCGGGCATTCGTGAGTGTC 61.101 63.158 0.00 0.00 0.00 3.67
230 264 1.203137 TCTTCTTCTTCCTGGACGGGA 60.203 52.381 0.00 0.00 0.00 5.14
232 266 2.563179 TCTTCTTCTTCTTCCTGGACGG 59.437 50.000 0.00 0.00 0.00 4.79
234 268 5.476091 TCTTCTTCTTCTTCTTCCTGGAC 57.524 43.478 0.00 0.00 0.00 4.02
235 269 5.841237 TCTTCTTCTTCTTCTTCTTCCTGGA 59.159 40.000 0.00 0.00 0.00 3.86
238 272 6.183361 TGCTTCTTCTTCTTCTTCTTCTTCCT 60.183 38.462 0.00 0.00 0.00 3.36
240 274 6.928492 TCTGCTTCTTCTTCTTCTTCTTCTTC 59.072 38.462 0.00 0.00 0.00 2.87
241 275 6.825610 TCTGCTTCTTCTTCTTCTTCTTCTT 58.174 36.000 0.00 0.00 0.00 2.52
242 276 6.418057 TCTGCTTCTTCTTCTTCTTCTTCT 57.582 37.500 0.00 0.00 0.00 2.85
244 278 6.825610 TCTTCTGCTTCTTCTTCTTCTTCTT 58.174 36.000 0.00 0.00 0.00 2.52
245 279 6.418057 TCTTCTGCTTCTTCTTCTTCTTCT 57.582 37.500 0.00 0.00 0.00 2.85
246 280 6.928492 TCTTCTTCTGCTTCTTCTTCTTCTTC 59.072 38.462 0.00 0.00 0.00 2.87
247 281 6.825610 TCTTCTTCTGCTTCTTCTTCTTCTT 58.174 36.000 0.00 0.00 0.00 2.52
248 282 6.418057 TCTTCTTCTGCTTCTTCTTCTTCT 57.582 37.500 0.00 0.00 0.00 2.85
249 283 6.928492 TCTTCTTCTTCTGCTTCTTCTTCTTC 59.072 38.462 0.00 0.00 0.00 2.87
250 284 6.825610 TCTTCTTCTTCTGCTTCTTCTTCTT 58.174 36.000 0.00 0.00 0.00 2.52
251 285 6.418057 TCTTCTTCTTCTGCTTCTTCTTCT 57.582 37.500 0.00 0.00 0.00 2.85
252 286 6.347644 GCTTCTTCTTCTTCTGCTTCTTCTTC 60.348 42.308 0.00 0.00 0.00 2.87
253 287 5.469760 GCTTCTTCTTCTTCTGCTTCTTCTT 59.530 40.000 0.00 0.00 0.00 2.52
254 288 4.996758 GCTTCTTCTTCTTCTGCTTCTTCT 59.003 41.667 0.00 0.00 0.00 2.85
255 289 4.754114 TGCTTCTTCTTCTTCTGCTTCTTC 59.246 41.667 0.00 0.00 0.00 2.87
256 290 4.712476 TGCTTCTTCTTCTTCTGCTTCTT 58.288 39.130 0.00 0.00 0.00 2.52
257 291 4.040217 TCTGCTTCTTCTTCTTCTGCTTCT 59.960 41.667 0.00 0.00 0.00 2.85
258 292 4.314121 TCTGCTTCTTCTTCTTCTGCTTC 58.686 43.478 0.00 0.00 0.00 3.86
259 293 4.348863 TCTGCTTCTTCTTCTTCTGCTT 57.651 40.909 0.00 0.00 0.00 3.91
260 294 4.040217 TCTTCTGCTTCTTCTTCTTCTGCT 59.960 41.667 0.00 0.00 0.00 4.24
261 295 4.314121 TCTTCTGCTTCTTCTTCTTCTGC 58.686 43.478 0.00 0.00 0.00 4.26
262 296 6.222389 TCTTCTTCTGCTTCTTCTTCTTCTG 58.778 40.000 0.00 0.00 0.00 3.02
263 297 6.267471 TCTCTTCTTCTGCTTCTTCTTCTTCT 59.733 38.462 0.00 0.00 0.00 2.85
264 298 6.454795 TCTCTTCTTCTGCTTCTTCTTCTTC 58.545 40.000 0.00 0.00 0.00 2.87
265 299 6.418057 TCTCTTCTTCTGCTTCTTCTTCTT 57.582 37.500 0.00 0.00 0.00 2.52
266 300 6.211184 TGATCTCTTCTTCTGCTTCTTCTTCT 59.789 38.462 0.00 0.00 0.00 2.85
267 301 6.397272 TGATCTCTTCTTCTGCTTCTTCTTC 58.603 40.000 0.00 0.00 0.00 2.87
268 302 6.211184 TCTGATCTCTTCTTCTGCTTCTTCTT 59.789 38.462 0.00 0.00 0.00 2.52
269 303 5.716228 TCTGATCTCTTCTTCTGCTTCTTCT 59.284 40.000 0.00 0.00 0.00 2.85
270 304 5.807011 GTCTGATCTCTTCTTCTGCTTCTTC 59.193 44.000 0.00 0.00 0.00 2.87
271 305 5.337491 GGTCTGATCTCTTCTTCTGCTTCTT 60.337 44.000 0.00 0.00 0.00 2.52
272 306 4.160252 GGTCTGATCTCTTCTTCTGCTTCT 59.840 45.833 0.00 0.00 0.00 2.85
273 307 4.081752 TGGTCTGATCTCTTCTTCTGCTTC 60.082 45.833 0.00 0.00 0.00 3.86
277 311 3.768757 ACCTGGTCTGATCTCTTCTTCTG 59.231 47.826 0.00 0.00 0.00 3.02
284 319 1.341089 TGCGTACCTGGTCTGATCTCT 60.341 52.381 0.63 0.00 0.00 3.10
307 342 1.271656 GCCGGCCTGACTATATACGTT 59.728 52.381 18.11 0.00 0.00 3.99
313 348 1.837051 CTGGGCCGGCCTGACTATA 60.837 63.158 42.70 19.56 36.10 1.31
315 350 4.715130 ACTGGGCCGGCCTGACTA 62.715 66.667 42.70 22.91 36.10 2.59
346 381 6.315551 CGAACTAAATCGATCTATCCATCGT 58.684 40.000 0.00 0.00 45.48 3.73
368 403 1.067142 CCGACCTTGATTTGAGACCGA 60.067 52.381 0.00 0.00 0.00 4.69
370 405 2.474410 ACCGACCTTGATTTGAGACC 57.526 50.000 0.00 0.00 0.00 3.85
376 412 2.951229 AGACCAACCGACCTTGATTT 57.049 45.000 0.00 0.00 0.00 2.17
387 423 7.460071 TGGATCTATCTACTACTAGACCAACC 58.540 42.308 0.00 0.00 31.46 3.77
392 428 9.742144 TTTGGATGGATCTATCTACTACTAGAC 57.258 37.037 17.50 0.00 31.46 2.59
397 433 7.044798 GGCATTTGGATGGATCTATCTACTAC 58.955 42.308 17.50 2.70 33.72 2.73
401 437 4.623886 GCGGCATTTGGATGGATCTATCTA 60.624 45.833 17.50 9.88 33.72 1.98
406 442 0.825010 GGCGGCATTTGGATGGATCT 60.825 55.000 3.07 0.00 33.72 2.75
407 443 1.108727 TGGCGGCATTTGGATGGATC 61.109 55.000 7.97 0.00 33.72 3.36
418 464 1.949525 GATCTAACAACATGGCGGCAT 59.050 47.619 20.18 20.18 0.00 4.40
426 472 6.127196 GGAAGAGACTCTGGATCTAACAACAT 60.127 42.308 5.55 0.00 0.00 2.71
431 477 6.538945 AAAGGAAGAGACTCTGGATCTAAC 57.461 41.667 5.55 0.00 0.00 2.34
433 479 7.896496 AGTAAAAAGGAAGAGACTCTGGATCTA 59.104 37.037 5.55 0.00 0.00 1.98
442 488 9.425577 CGATCTTTAAGTAAAAAGGAAGAGACT 57.574 33.333 0.00 0.00 37.13 3.24
447 493 7.057149 TCGCGATCTTTAAGTAAAAAGGAAG 57.943 36.000 3.71 0.00 37.13 3.46
461 516 1.654105 CAACTTACGCTCGCGATCTTT 59.346 47.619 18.98 0.00 42.83 2.52
462 517 1.135489 TCAACTTACGCTCGCGATCTT 60.135 47.619 18.98 0.51 42.83 2.40
463 518 0.450583 TCAACTTACGCTCGCGATCT 59.549 50.000 18.98 0.00 42.83 2.75
464 519 0.840729 CTCAACTTACGCTCGCGATC 59.159 55.000 18.98 3.96 42.83 3.69
465 520 0.525668 CCTCAACTTACGCTCGCGAT 60.526 55.000 18.98 0.00 42.83 4.58
471 526 3.100671 AGGAAGATCCTCAACTTACGCT 58.899 45.455 0.00 0.00 45.66 5.07
475 530 9.015367 CGAATCTATAGGAAGATCCTCAACTTA 57.985 37.037 1.36 0.00 45.66 2.24
476 531 7.507616 ACGAATCTATAGGAAGATCCTCAACTT 59.492 37.037 1.36 0.00 45.66 2.66
477 532 7.007723 ACGAATCTATAGGAAGATCCTCAACT 58.992 38.462 1.36 0.00 45.66 3.16
478 533 7.222000 ACGAATCTATAGGAAGATCCTCAAC 57.778 40.000 1.36 0.00 45.66 3.18
479 534 8.383947 TCTACGAATCTATAGGAAGATCCTCAA 58.616 37.037 1.36 0.00 45.66 3.02
480 535 7.919151 TCTACGAATCTATAGGAAGATCCTCA 58.081 38.462 1.36 0.00 45.66 3.86
533 588 9.401058 AGCTAGCAGTACATGATTTTAAATCTT 57.599 29.630 18.83 9.31 0.00 2.40
534 589 8.970859 AGCTAGCAGTACATGATTTTAAATCT 57.029 30.769 18.83 1.89 0.00 2.40
536 591 9.277783 CCTAGCTAGCAGTACATGATTTTAAAT 57.722 33.333 18.83 0.00 0.00 1.40
537 592 8.482943 TCCTAGCTAGCAGTACATGATTTTAAA 58.517 33.333 18.83 0.00 0.00 1.52
538 593 8.018537 TCCTAGCTAGCAGTACATGATTTTAA 57.981 34.615 18.83 0.00 0.00 1.52
539 594 7.597288 TCCTAGCTAGCAGTACATGATTTTA 57.403 36.000 18.83 0.00 0.00 1.52
540 595 6.485830 TCCTAGCTAGCAGTACATGATTTT 57.514 37.500 18.83 0.00 0.00 1.82
541 596 6.462500 CATCCTAGCTAGCAGTACATGATTT 58.538 40.000 18.83 0.00 0.00 2.17
542 597 5.046735 CCATCCTAGCTAGCAGTACATGATT 60.047 44.000 18.83 0.00 0.00 2.57
543 598 4.465660 CCATCCTAGCTAGCAGTACATGAT 59.534 45.833 18.83 7.09 0.00 2.45
544 599 3.829026 CCATCCTAGCTAGCAGTACATGA 59.171 47.826 18.83 4.96 0.00 3.07
545 600 3.829026 TCCATCCTAGCTAGCAGTACATG 59.171 47.826 18.83 11.41 0.00 3.21
546 601 4.119556 TCCATCCTAGCTAGCAGTACAT 57.880 45.455 18.83 0.00 0.00 2.29
547 602 3.595190 TCCATCCTAGCTAGCAGTACA 57.405 47.619 18.83 0.00 0.00 2.90
548 603 5.245075 AGAAATCCATCCTAGCTAGCAGTAC 59.755 44.000 18.83 0.77 0.00 2.73
549 604 5.398236 AGAAATCCATCCTAGCTAGCAGTA 58.602 41.667 18.83 0.00 0.00 2.74
550 605 4.230455 AGAAATCCATCCTAGCTAGCAGT 58.770 43.478 18.83 0.00 0.00 4.40
551 606 4.888326 AGAAATCCATCCTAGCTAGCAG 57.112 45.455 18.83 11.93 0.00 4.24
552 607 5.782331 ACATAGAAATCCATCCTAGCTAGCA 59.218 40.000 18.83 0.00 0.00 3.49
553 608 6.071108 TCACATAGAAATCCATCCTAGCTAGC 60.071 42.308 15.74 6.62 0.00 3.42
554 609 7.473735 TCACATAGAAATCCATCCTAGCTAG 57.526 40.000 14.20 14.20 0.00 3.42
555 610 7.523873 CGTTCACATAGAAATCCATCCTAGCTA 60.524 40.741 0.00 0.00 38.13 3.32
556 611 6.529220 GTTCACATAGAAATCCATCCTAGCT 58.471 40.000 0.00 0.00 38.13 3.32
557 612 5.406780 CGTTCACATAGAAATCCATCCTAGC 59.593 44.000 0.00 0.00 38.13 3.42
571 626 5.567154 CGCAGATCTAAGATCGTTCACATAG 59.433 44.000 0.00 0.00 0.00 2.23
575 630 3.046390 CCGCAGATCTAAGATCGTTCAC 58.954 50.000 0.00 0.00 0.00 3.18
619 795 1.688197 TCGTAATTAACCCTAGGCCGG 59.312 52.381 2.05 0.00 0.00 6.13
620 796 2.363359 AGTCGTAATTAACCCTAGGCCG 59.637 50.000 2.05 0.00 0.00 6.13
621 797 4.829492 TCTAGTCGTAATTAACCCTAGGCC 59.171 45.833 2.05 0.00 31.55 5.19
622 798 5.300286 TGTCTAGTCGTAATTAACCCTAGGC 59.700 44.000 2.05 9.55 34.02 3.93
624 800 7.041235 CCTCTGTCTAGTCGTAATTAACCCTAG 60.041 44.444 7.01 7.01 31.74 3.02
625 801 6.769822 CCTCTGTCTAGTCGTAATTAACCCTA 59.230 42.308 0.00 0.00 0.00 3.53
626 802 5.593502 CCTCTGTCTAGTCGTAATTAACCCT 59.406 44.000 0.00 0.00 0.00 4.34
628 804 5.163581 TGCCTCTGTCTAGTCGTAATTAACC 60.164 44.000 0.00 0.00 0.00 2.85
634 810 1.743958 GCTGCCTCTGTCTAGTCGTAA 59.256 52.381 0.00 0.00 0.00 3.18
635 811 1.339727 TGCTGCCTCTGTCTAGTCGTA 60.340 52.381 0.00 0.00 0.00 3.43
638 814 4.305769 CATTATGCTGCCTCTGTCTAGTC 58.694 47.826 0.00 0.00 0.00 2.59
640 816 3.065655 GCATTATGCTGCCTCTGTCTAG 58.934 50.000 10.27 0.00 40.96 2.43
641 817 2.546584 CGCATTATGCTGCCTCTGTCTA 60.547 50.000 15.54 0.00 42.25 2.59
642 818 1.809271 CGCATTATGCTGCCTCTGTCT 60.809 52.381 15.54 0.00 42.25 3.41
647 829 2.250485 CGCGCATTATGCTGCCTC 59.750 61.111 21.13 4.94 42.25 4.70
651 833 1.710249 GTTTATGCGCGCATTATGCTG 59.290 47.619 46.64 9.74 42.25 4.41
654 836 4.676471 AGAAATGTTTATGCGCGCATTATG 59.324 37.500 46.64 0.00 37.82 1.90
659 841 1.198867 ACAGAAATGTTTATGCGCGCA 59.801 42.857 38.27 38.27 32.91 6.09
662 844 6.237306 GCTAGAAAACAGAAATGTTTATGCGC 60.237 38.462 0.00 0.00 40.67 6.09
668 850 5.531287 ACTCGGCTAGAAAACAGAAATGTTT 59.469 36.000 0.00 0.65 43.04 2.83
688 870 2.738846 CTGACCTGTTTGATCCAACTCG 59.261 50.000 10.69 3.77 0.00 4.18
704 886 1.961277 CTTGGTGCGTGACCTGACC 60.961 63.158 7.21 0.00 46.32 4.02
709 891 2.193536 AAAGCCTTGGTGCGTGACC 61.194 57.895 0.00 0.00 46.37 4.02
751 948 3.248446 TAGGGTGCAGTGGAACGCC 62.248 63.158 0.00 0.00 45.86 5.68
753 950 0.670546 CTGTAGGGTGCAGTGGAACG 60.671 60.000 0.00 0.00 45.86 3.95
780 980 1.704628 TGGAACTGGCTGAGAAATGGA 59.295 47.619 0.00 0.00 0.00 3.41
781 981 1.815003 GTGGAACTGGCTGAGAAATGG 59.185 52.381 0.00 0.00 0.00 3.16
782 982 1.815003 GGTGGAACTGGCTGAGAAATG 59.185 52.381 0.00 0.00 36.74 2.32
783 983 1.272147 GGGTGGAACTGGCTGAGAAAT 60.272 52.381 0.00 0.00 36.74 2.17
784 984 0.110486 GGGTGGAACTGGCTGAGAAA 59.890 55.000 0.00 0.00 36.74 2.52
786 986 2.224159 GGGGTGGAACTGGCTGAGA 61.224 63.158 0.00 0.00 36.74 3.27
787 987 2.352805 GGGGTGGAACTGGCTGAG 59.647 66.667 0.00 0.00 36.74 3.35
790 990 3.953775 CACGGGGTGGAACTGGCT 61.954 66.667 0.00 0.00 36.74 4.75
792 992 4.263572 TGCACGGGGTGGAACTGG 62.264 66.667 0.00 0.00 36.74 4.00
804 1004 1.120147 GCTGTTAAATCGCGTGCACG 61.120 55.000 34.01 34.01 43.27 5.34
818 1018 7.011109 CGCACTGGTAGTAATTAATAAGCTGTT 59.989 37.037 0.00 0.00 0.00 3.16
823 1023 7.381678 GTCTCCGCACTGGTAGTAATTAATAAG 59.618 40.741 0.00 0.00 39.52 1.73
825 1025 6.321945 TGTCTCCGCACTGGTAGTAATTAATA 59.678 38.462 0.00 0.00 39.52 0.98
830 1030 2.427453 CTGTCTCCGCACTGGTAGTAAT 59.573 50.000 0.00 0.00 39.52 1.89
833 1033 1.251527 CCTGTCTCCGCACTGGTAGT 61.252 60.000 0.00 0.00 39.52 2.73
834 1034 1.251527 ACCTGTCTCCGCACTGGTAG 61.252 60.000 2.15 0.00 44.45 3.18
835 1035 0.830444 AACCTGTCTCCGCACTGGTA 60.830 55.000 4.26 0.00 45.26 3.25
836 1036 2.524394 ACCTGTCTCCGCACTGGT 60.524 61.111 0.00 0.00 42.23 4.00
847 1047 7.526142 TGACCAGAGTATATATGAACCTGTC 57.474 40.000 0.00 0.00 0.00 3.51
848 1048 7.510685 ACATGACCAGAGTATATATGAACCTGT 59.489 37.037 0.00 0.00 0.00 4.00
860 1060 9.479549 AAATCCAAATTAACATGACCAGAGTAT 57.520 29.630 0.00 0.00 0.00 2.12
861 1061 8.877864 AAATCCAAATTAACATGACCAGAGTA 57.122 30.769 0.00 0.00 0.00 2.59
862 1062 7.451255 TGAAATCCAAATTAACATGACCAGAGT 59.549 33.333 0.00 0.00 0.00 3.24
863 1063 7.829725 TGAAATCCAAATTAACATGACCAGAG 58.170 34.615 0.00 0.00 0.00 3.35
864 1064 7.773489 TGAAATCCAAATTAACATGACCAGA 57.227 32.000 0.00 0.00 0.00 3.86
865 1065 8.830201 TTTGAAATCCAAATTAACATGACCAG 57.170 30.769 0.00 0.00 39.65 4.00
927 1162 8.867112 TTGTTAGTGAGTAGTGAAGTAAACAG 57.133 34.615 0.00 0.00 0.00 3.16
934 1169 6.090088 GCACTGATTGTTAGTGAGTAGTGAAG 59.910 42.308 9.14 0.00 46.52 3.02
936 1171 5.010617 TGCACTGATTGTTAGTGAGTAGTGA 59.989 40.000 9.14 0.00 46.52 3.41
1051 1290 4.496670 CCGGAATCTGTCGGTGAC 57.503 61.111 0.00 0.00 41.23 3.67
1062 1301 0.958876 GAAAACCTGGACGCCGGAAT 60.959 55.000 5.05 0.00 29.82 3.01
1072 1311 4.102113 CAGGCCCTGAAAACCTGG 57.898 61.111 4.15 0.00 45.97 4.45
1162 1404 1.740296 CGAATCGGTGCGGTTTCCT 60.740 57.895 0.00 0.00 27.16 3.36
1328 1570 0.539518 TATAAGAAGGCAGTGGCGCA 59.460 50.000 10.83 0.00 42.47 6.09
1331 1581 5.582689 AACATTTATAAGAAGGCAGTGGC 57.417 39.130 9.02 9.02 40.13 5.01
1338 1588 8.055279 TGCAGGAAGAAACATTTATAAGAAGG 57.945 34.615 0.00 0.00 0.00 3.46
1344 1594 5.260424 TGGCTGCAGGAAGAAACATTTATA 58.740 37.500 17.12 0.00 0.00 0.98
1349 1599 1.822990 CATGGCTGCAGGAAGAAACAT 59.177 47.619 17.12 0.00 0.00 2.71
1475 1740 3.117625 TGGCGGATATATACCTCGGAGAT 60.118 47.826 6.58 0.00 33.89 2.75
1542 1814 3.736433 CGAGATCCAGCCAGTCAGTAAAG 60.736 52.174 0.00 0.00 0.00 1.85
1544 1816 1.751351 CGAGATCCAGCCAGTCAGTAA 59.249 52.381 0.00 0.00 0.00 2.24
1584 1860 1.064832 AGTACCTCACCCTCTCGTACC 60.065 57.143 0.00 0.00 31.65 3.34
1682 1958 1.957089 CTAGCTTGATCGATCGACGG 58.043 55.000 22.06 11.52 42.82 4.79
1705 1989 2.504244 GCGGGTTGAGACGACGAG 60.504 66.667 0.00 0.00 0.00 4.18
1720 2004 5.286797 CACTGAAATTATCAAACACCATGCG 59.713 40.000 0.00 0.00 37.67 4.73
1721 2005 6.389091 TCACTGAAATTATCAAACACCATGC 58.611 36.000 0.00 0.00 37.67 4.06
1729 2019 7.077605 CGCAAAGACTCACTGAAATTATCAAA 58.922 34.615 0.00 0.00 37.67 2.69
1733 2023 5.934625 AGACGCAAAGACTCACTGAAATTAT 59.065 36.000 0.00 0.00 0.00 1.28
1734 2024 5.177511 CAGACGCAAAGACTCACTGAAATTA 59.822 40.000 0.00 0.00 0.00 1.40
1735 2025 4.024556 CAGACGCAAAGACTCACTGAAATT 60.025 41.667 0.00 0.00 0.00 1.82
1753 2043 2.811431 TGGAAATTGTAACCAGCAGACG 59.189 45.455 0.00 0.00 0.00 4.18
1754 2044 3.191371 CCTGGAAATTGTAACCAGCAGAC 59.809 47.826 0.00 0.00 46.65 3.51
1765 2055 1.382629 CCCCGGACCTGGAAATTGT 59.617 57.895 0.73 0.00 0.00 2.71
1823 2113 0.456312 GCTGGTTGTCCTCGTAGTCG 60.456 60.000 0.00 0.00 38.55 4.18
1947 2237 9.862371 GAAATCAAGTTCTTCAGATACACTCTA 57.138 33.333 0.00 0.00 31.13 2.43
1950 2240 9.646427 GTAGAAATCAAGTTCTTCAGATACACT 57.354 33.333 0.00 0.00 38.75 3.55
1951 2241 9.646427 AGTAGAAATCAAGTTCTTCAGATACAC 57.354 33.333 0.00 0.00 38.75 2.90
1975 2296 3.996921 AATCATCCAGTGCTCTCAAGT 57.003 42.857 0.00 0.00 0.00 3.16
2071 2393 2.124942 TGCCAGTCGTTGCACACA 60.125 55.556 0.00 0.00 31.31 3.72
2170 2495 8.712363 TGATATGCAGAGCGAATATAAAGTTTC 58.288 33.333 0.00 0.00 0.00 2.78
2184 2509 3.047796 CCGCAAAATTGATATGCAGAGC 58.952 45.455 0.00 0.00 40.04 4.09
2217 2584 5.473039 GAGTTGCAATGTAAAATTCAGGCT 58.527 37.500 0.59 0.00 0.00 4.58
2218 2585 4.627035 GGAGTTGCAATGTAAAATTCAGGC 59.373 41.667 0.59 0.00 0.00 4.85
2219 2586 5.782047 TGGAGTTGCAATGTAAAATTCAGG 58.218 37.500 0.59 0.00 0.00 3.86
2329 2696 1.410004 AGGACGACTTGAACCTGTCA 58.590 50.000 0.00 0.00 33.18 3.58
2440 2807 1.123077 CAGCATAGTAGGGGCTCACA 58.877 55.000 0.00 0.00 35.27 3.58
2458 2825 1.035923 CGCCAGAGATTAGCTCCTCA 58.964 55.000 11.65 0.00 45.10 3.86
2666 3041 4.310769 CCTCGTTTGTCAGAACTCAGAAT 58.689 43.478 0.00 0.00 0.00 2.40
2673 3048 2.354821 ACTTTGCCTCGTTTGTCAGAAC 59.645 45.455 0.00 0.00 0.00 3.01
2674 3049 2.354510 CACTTTGCCTCGTTTGTCAGAA 59.645 45.455 0.00 0.00 0.00 3.02
2675 3050 1.939934 CACTTTGCCTCGTTTGTCAGA 59.060 47.619 0.00 0.00 0.00 3.27
2676 3051 1.939934 TCACTTTGCCTCGTTTGTCAG 59.060 47.619 0.00 0.00 0.00 3.51
2677 3052 1.668751 GTCACTTTGCCTCGTTTGTCA 59.331 47.619 0.00 0.00 0.00 3.58
2678 3053 1.668751 TGTCACTTTGCCTCGTTTGTC 59.331 47.619 0.00 0.00 0.00 3.18
2679 3054 1.670811 CTGTCACTTTGCCTCGTTTGT 59.329 47.619 0.00 0.00 0.00 2.83
2680 3055 1.002468 CCTGTCACTTTGCCTCGTTTG 60.002 52.381 0.00 0.00 0.00 2.93
2681 3056 1.308998 CCTGTCACTTTGCCTCGTTT 58.691 50.000 0.00 0.00 0.00 3.60
2847 3222 0.898789 TGGACGTCCTCCTCCTTCAC 60.899 60.000 33.39 4.65 40.26 3.18
2885 3260 0.460284 GGTCAGCAATGTCGGTCGAT 60.460 55.000 0.00 0.00 0.00 3.59
2886 3261 1.080093 GGTCAGCAATGTCGGTCGA 60.080 57.895 0.00 0.00 0.00 4.20
2912 3306 3.063485 GGCGAGCTATCAGGAGATTTTC 58.937 50.000 0.00 0.00 35.67 2.29
2915 3309 0.600557 CGGCGAGCTATCAGGAGATT 59.399 55.000 0.00 0.00 35.67 2.40
2916 3310 0.538516 ACGGCGAGCTATCAGGAGAT 60.539 55.000 16.62 0.00 38.29 2.75
2917 3311 1.152943 ACGGCGAGCTATCAGGAGA 60.153 57.895 16.62 0.00 0.00 3.71
2918 3312 1.007964 CACGGCGAGCTATCAGGAG 60.008 63.158 16.62 0.00 0.00 3.69
2919 3313 2.490148 CCACGGCGAGCTATCAGGA 61.490 63.158 16.62 0.00 0.00 3.86
2923 3317 2.574955 ATCCCCACGGCGAGCTATC 61.575 63.158 16.62 0.00 0.00 2.08
2925 3319 3.536917 CATCCCCACGGCGAGCTA 61.537 66.667 16.62 0.00 0.00 3.32
2933 3327 4.424711 CACCCACCCATCCCCACG 62.425 72.222 0.00 0.00 0.00 4.94
2934 3328 2.938798 TCACCCACCCATCCCCAC 60.939 66.667 0.00 0.00 0.00 4.61
2935 3329 2.938798 GTCACCCACCCATCCCCA 60.939 66.667 0.00 0.00 0.00 4.96
2936 3330 2.614013 AGTCACCCACCCATCCCC 60.614 66.667 0.00 0.00 0.00 4.81
2937 3331 1.923395 TCAGTCACCCACCCATCCC 60.923 63.158 0.00 0.00 0.00 3.85
2938 3332 1.201429 AGTCAGTCACCCACCCATCC 61.201 60.000 0.00 0.00 0.00 3.51
2939 3333 0.036010 CAGTCAGTCACCCACCCATC 60.036 60.000 0.00 0.00 0.00 3.51
2940 3334 0.473694 TCAGTCAGTCACCCACCCAT 60.474 55.000 0.00 0.00 0.00 4.00
2941 3335 0.473694 ATCAGTCAGTCACCCACCCA 60.474 55.000 0.00 0.00 0.00 4.51
2942 3336 0.250513 GATCAGTCAGTCACCCACCC 59.749 60.000 0.00 0.00 0.00 4.61
2943 3337 0.108615 CGATCAGTCAGTCACCCACC 60.109 60.000 0.00 0.00 0.00 4.61
2944 3338 0.888619 TCGATCAGTCAGTCACCCAC 59.111 55.000 0.00 0.00 0.00 4.61
2945 3339 1.627864 TTCGATCAGTCAGTCACCCA 58.372 50.000 0.00 0.00 0.00 4.51
2946 3340 2.544685 CATTCGATCAGTCAGTCACCC 58.455 52.381 0.00 0.00 0.00 4.61
2947 3341 1.929836 GCATTCGATCAGTCAGTCACC 59.070 52.381 0.00 0.00 0.00 4.02
2948 3342 2.610433 TGCATTCGATCAGTCAGTCAC 58.390 47.619 0.00 0.00 0.00 3.67
2949 3343 3.531934 ATGCATTCGATCAGTCAGTCA 57.468 42.857 0.00 0.00 0.00 3.41
2950 3344 3.545624 GCAATGCATTCGATCAGTCAGTC 60.546 47.826 9.53 0.00 0.00 3.51
2951 3345 2.353889 GCAATGCATTCGATCAGTCAGT 59.646 45.455 9.53 0.00 0.00 3.41
2952 3346 2.353579 TGCAATGCATTCGATCAGTCAG 59.646 45.455 9.53 0.00 31.71 3.51
2953 3347 2.353579 CTGCAATGCATTCGATCAGTCA 59.646 45.455 8.91 0.00 38.13 3.41
2956 3350 1.001706 CCCTGCAATGCATTCGATCAG 60.002 52.381 8.91 13.36 38.13 2.90
3033 3427 4.722700 CCACGGCCCTCACCTTGG 62.723 72.222 0.00 0.00 42.16 3.61
3106 3500 4.373116 TCGAAGCGGCTGGTGACC 62.373 66.667 1.81 0.00 0.00 4.02
3151 3545 0.108709 TTACCGTTCCGTAGCGCATT 60.109 50.000 11.47 0.00 0.00 3.56
3175 3569 2.238395 GCAAGAAGGACTGAAGGAGGAT 59.762 50.000 0.00 0.00 0.00 3.24
3176 3570 1.625818 GCAAGAAGGACTGAAGGAGGA 59.374 52.381 0.00 0.00 0.00 3.71
3183 3577 1.072331 GGAACTGGCAAGAAGGACTGA 59.928 52.381 0.00 0.00 0.00 3.41
3184 3578 1.072965 AGGAACTGGCAAGAAGGACTG 59.927 52.381 0.00 0.00 37.18 3.51
3185 3579 1.349357 GAGGAACTGGCAAGAAGGACT 59.651 52.381 0.00 0.00 41.55 3.85
3186 3580 1.072331 TGAGGAACTGGCAAGAAGGAC 59.928 52.381 0.00 0.00 41.55 3.85
3187 3581 1.072331 GTGAGGAACTGGCAAGAAGGA 59.928 52.381 0.00 0.00 41.55 3.36
3199 3593 2.206576 ATGCAAAGGAGGTGAGGAAC 57.793 50.000 0.00 0.00 0.00 3.62
3205 3599 2.889045 CCATGGATATGCAAAGGAGGTG 59.111 50.000 5.56 0.00 32.79 4.00
3213 3607 2.241160 GTCATGGCCATGGATATGCAA 58.759 47.619 38.81 19.09 39.24 4.08
3214 3608 1.548355 GGTCATGGCCATGGATATGCA 60.548 52.381 38.81 19.81 39.24 3.96
3295 3694 0.174845 CGGTCTTGCCTTCCACGATA 59.825 55.000 0.00 0.00 34.25 2.92
3304 3703 2.852075 TGGAACCCGGTCTTGCCT 60.852 61.111 0.00 0.00 34.25 4.75
3340 3739 2.226674 GAGGATCGATGAGCATACGTCA 59.773 50.000 0.54 0.00 0.00 4.35
3347 3746 4.827284 TGTATACAAGAGGATCGATGAGCA 59.173 41.667 0.54 0.00 42.67 4.26
3367 3766 8.626526 CCATGATGAACAAGATGAATGAATGTA 58.373 33.333 0.00 0.00 0.00 2.29
3369 3768 6.420903 GCCATGATGAACAAGATGAATGAATG 59.579 38.462 0.00 0.00 0.00 2.67
3370 3769 6.097696 TGCCATGATGAACAAGATGAATGAAT 59.902 34.615 0.00 0.00 0.00 2.57
3372 3771 4.951094 TGCCATGATGAACAAGATGAATGA 59.049 37.500 0.00 0.00 0.00 2.57
3373 3772 5.257082 TGCCATGATGAACAAGATGAATG 57.743 39.130 0.00 0.00 0.00 2.67
3374 3773 4.202121 GCTGCCATGATGAACAAGATGAAT 60.202 41.667 0.00 0.00 0.00 2.57
3390 3789 1.201424 TGATCTGTCTGAGCTGCCAT 58.799 50.000 0.00 0.00 31.32 4.40
3394 3793 3.866327 CACTTCATGATCTGTCTGAGCTG 59.134 47.826 0.00 0.00 31.32 4.24
3402 3801 2.039480 AGTGCACCACTTCATGATCTGT 59.961 45.455 14.63 0.00 42.59 3.41
3414 3813 2.094234 ACCAACAAGAAAAGTGCACCAC 60.094 45.455 14.63 2.58 34.10 4.16
3418 3817 1.134848 GCCACCAACAAGAAAAGTGCA 60.135 47.619 0.00 0.00 0.00 4.57
3419 3818 1.570813 GCCACCAACAAGAAAAGTGC 58.429 50.000 0.00 0.00 0.00 4.40
3420 3819 1.480137 TGGCCACCAACAAGAAAAGTG 59.520 47.619 0.00 0.00 0.00 3.16
3421 3820 1.756538 CTGGCCACCAACAAGAAAAGT 59.243 47.619 0.00 0.00 30.80 2.66
3428 3829 1.683707 TTGCACTGGCCACCAACAA 60.684 52.632 0.00 0.89 40.13 2.83
3430 3831 2.417097 GTTGCACTGGCCACCAAC 59.583 61.111 18.14 18.14 40.13 3.77
3587 3989 2.637382 TGTTCCAGGAAGTGCATACTGA 59.363 45.455 0.54 0.00 37.19 3.41
3588 3990 3.057969 TGTTCCAGGAAGTGCATACTG 57.942 47.619 0.54 0.00 37.19 2.74
3591 3998 3.788227 AGTTGTTCCAGGAAGTGCATA 57.212 42.857 0.54 0.00 0.00 3.14
3597 4004 5.215252 TCACTCTTAGTTGTTCCAGGAAG 57.785 43.478 0.54 0.00 0.00 3.46
3600 4007 4.319177 CCTTCACTCTTAGTTGTTCCAGG 58.681 47.826 0.00 0.00 0.00 4.45
3602 4009 3.496160 GCCCTTCACTCTTAGTTGTTCCA 60.496 47.826 0.00 0.00 0.00 3.53
3603 4010 3.075148 GCCCTTCACTCTTAGTTGTTCC 58.925 50.000 0.00 0.00 0.00 3.62
3669 4093 1.761174 GTCCTCCCAGTTCTTGGCA 59.239 57.895 0.00 0.00 46.32 4.92
3798 4222 3.194719 GCTCCATGCACCAGAAGC 58.805 61.111 0.00 0.00 42.31 3.86
3825 4249 1.414181 CCATACGAGAACCCTGCAGAT 59.586 52.381 17.39 0.00 0.00 2.90
3973 4397 2.803451 CAAGCGGCACAACAAAAGTTA 58.197 42.857 1.45 0.00 0.00 2.24
4015 4448 2.504175 TCATAGGCACAACCCCTAACTC 59.496 50.000 0.00 0.00 38.38 3.01
4031 4464 5.526479 AGCACAATTCAGCACACTATCATAG 59.474 40.000 1.89 0.00 0.00 2.23
4033 4466 4.267536 AGCACAATTCAGCACACTATCAT 58.732 39.130 1.89 0.00 0.00 2.45
4108 4544 3.791973 AACACGGAGAAACAATTGCAA 57.208 38.095 5.05 0.00 0.00 4.08
4109 4545 3.129462 TCAAACACGGAGAAACAATTGCA 59.871 39.130 5.05 0.00 0.00 4.08
4112 4548 4.260620 CGACTCAAACACGGAGAAACAATT 60.261 41.667 0.00 0.00 36.26 2.32
4252 5024 3.953612 TCCTTCATTGCAAAACAGTGAGT 59.046 39.130 1.71 0.00 44.74 3.41
4253 5025 4.572985 TCCTTCATTGCAAAACAGTGAG 57.427 40.909 1.71 0.00 44.74 3.51
4258 5030 6.152661 CCTAGGTATTCCTTCATTGCAAAACA 59.847 38.462 1.71 0.00 42.12 2.83
4292 5065 6.486320 AGGTATTCCTTTGTTTTGCATTTTGG 59.514 34.615 0.00 0.00 42.12 3.28
4293 5066 7.495135 AGGTATTCCTTTGTTTTGCATTTTG 57.505 32.000 0.00 0.00 42.12 2.44
4294 5067 7.877612 CCTAGGTATTCCTTTGTTTTGCATTTT 59.122 33.333 0.00 0.00 42.12 1.82
4295 5068 7.016170 ACCTAGGTATTCCTTTGTTTTGCATTT 59.984 33.333 14.41 0.00 42.12 2.32
4296 5069 6.496911 ACCTAGGTATTCCTTTGTTTTGCATT 59.503 34.615 14.41 0.00 42.12 3.56
4297 5070 6.016555 ACCTAGGTATTCCTTTGTTTTGCAT 58.983 36.000 14.41 0.00 42.12 3.96
4298 5071 5.242838 CACCTAGGTATTCCTTTGTTTTGCA 59.757 40.000 15.80 0.00 42.12 4.08
4299 5072 5.243060 ACACCTAGGTATTCCTTTGTTTTGC 59.757 40.000 15.80 0.00 42.12 3.68
4300 5073 6.894339 ACACCTAGGTATTCCTTTGTTTTG 57.106 37.500 15.80 0.00 42.12 2.44
4301 5074 8.222637 ACTTACACCTAGGTATTCCTTTGTTTT 58.777 33.333 15.80 0.00 42.12 2.43
4302 5075 7.752638 ACTTACACCTAGGTATTCCTTTGTTT 58.247 34.615 15.80 0.00 42.12 2.83
4303 5076 7.325725 ACTTACACCTAGGTATTCCTTTGTT 57.674 36.000 15.80 0.00 42.12 2.83
4304 5077 6.947376 ACTTACACCTAGGTATTCCTTTGT 57.053 37.500 15.80 8.36 42.12 2.83
4305 5078 6.822170 GGAACTTACACCTAGGTATTCCTTTG 59.178 42.308 15.80 1.77 42.12 2.77
4306 5079 6.502863 TGGAACTTACACCTAGGTATTCCTTT 59.497 38.462 25.87 14.11 42.12 3.11
4307 5080 6.027482 TGGAACTTACACCTAGGTATTCCTT 58.973 40.000 25.87 14.00 42.12 3.36
4309 5082 5.945144 TGGAACTTACACCTAGGTATTCC 57.055 43.478 15.80 20.29 34.88 3.01
4310 5083 6.704310 TGTTGGAACTTACACCTAGGTATTC 58.296 40.000 15.80 12.70 0.00 1.75
4311 5084 6.691255 TGTTGGAACTTACACCTAGGTATT 57.309 37.500 15.80 7.30 0.00 1.89
4312 5085 6.352737 CCATGTTGGAACTTACACCTAGGTAT 60.353 42.308 15.80 5.85 40.96 2.73
4313 5086 5.046159 CCATGTTGGAACTTACACCTAGGTA 60.046 44.000 15.80 0.00 40.96 3.08
4314 5087 4.263331 CCATGTTGGAACTTACACCTAGGT 60.263 45.833 9.21 9.21 40.96 3.08
4315 5088 4.261801 CCATGTTGGAACTTACACCTAGG 58.738 47.826 7.41 7.41 40.96 3.02
4316 5089 3.689649 GCCATGTTGGAACTTACACCTAG 59.310 47.826 0.00 0.00 40.96 3.02
4317 5090 3.681593 GCCATGTTGGAACTTACACCTA 58.318 45.455 0.00 0.00 40.96 3.08
4318 5091 2.514803 GCCATGTTGGAACTTACACCT 58.485 47.619 0.00 0.00 40.96 4.00
4319 5092 1.199097 CGCCATGTTGGAACTTACACC 59.801 52.381 0.00 0.00 40.96 4.16
4320 5093 1.199097 CCGCCATGTTGGAACTTACAC 59.801 52.381 0.00 0.00 40.96 2.90
4321 5094 1.202830 ACCGCCATGTTGGAACTTACA 60.203 47.619 7.42 0.00 40.96 2.41
4322 5095 1.199097 CACCGCCATGTTGGAACTTAC 59.801 52.381 7.42 0.00 40.96 2.34
4323 5096 1.529226 CACCGCCATGTTGGAACTTA 58.471 50.000 7.42 0.00 40.96 2.24
4324 5097 1.805428 GCACCGCCATGTTGGAACTT 61.805 55.000 7.42 0.00 40.96 2.66
4325 5098 2.268076 GCACCGCCATGTTGGAACT 61.268 57.895 7.42 0.00 40.96 3.01
4326 5099 2.258286 GCACCGCCATGTTGGAAC 59.742 61.111 7.42 0.00 40.96 3.62
4327 5100 3.361158 CGCACCGCCATGTTGGAA 61.361 61.111 7.42 0.00 40.96 3.53
4328 5101 3.620419 ATCGCACCGCCATGTTGGA 62.620 57.895 7.42 0.00 40.96 3.53
4329 5102 3.133464 ATCGCACCGCCATGTTGG 61.133 61.111 0.00 0.00 41.55 3.77
4333 5106 3.576356 GGTCATCGCACCGCCATG 61.576 66.667 0.00 0.00 0.00 3.66
4365 5138 0.593128 GTTGGCGATTCAACTGCAGT 59.407 50.000 15.25 15.25 42.54 4.40
4366 5139 0.453282 CGTTGGCGATTCAACTGCAG 60.453 55.000 13.48 13.48 43.36 4.41
4367 5140 1.163420 ACGTTGGCGATTCAACTGCA 61.163 50.000 12.46 0.00 43.36 4.41
4368 5141 0.793861 TACGTTGGCGATTCAACTGC 59.206 50.000 0.00 0.00 43.36 4.40
4371 5144 4.028648 CGAATTTTACGTTGGCGATTCAAC 59.971 41.667 0.00 6.64 42.43 3.18
4372 5145 4.152526 CGAATTTTACGTTGGCGATTCAA 58.847 39.130 0.00 0.00 42.00 2.69
4373 5146 3.738399 CGAATTTTACGTTGGCGATTCA 58.262 40.909 0.00 0.00 42.00 2.57
4374 5147 2.524699 GCGAATTTTACGTTGGCGATTC 59.475 45.455 0.00 0.00 42.00 2.52
4375 5148 2.511879 GCGAATTTTACGTTGGCGATT 58.488 42.857 0.00 0.00 42.00 3.34
4376 5149 1.202098 GGCGAATTTTACGTTGGCGAT 60.202 47.619 0.00 0.00 42.00 4.58
4377 5150 0.166379 GGCGAATTTTACGTTGGCGA 59.834 50.000 0.00 0.00 42.00 5.54
4378 5151 1.123559 CGGCGAATTTTACGTTGGCG 61.124 55.000 0.00 0.00 44.93 5.69
4379 5152 0.110101 ACGGCGAATTTTACGTTGGC 60.110 50.000 16.62 0.00 35.90 4.52
4380 5153 1.461897 AGACGGCGAATTTTACGTTGG 59.538 47.619 16.62 0.00 39.95 3.77
4381 5154 2.867456 AGACGGCGAATTTTACGTTG 57.133 45.000 16.62 0.00 39.95 4.10
4383 5156 1.136169 GCAAGACGGCGAATTTTACGT 60.136 47.619 16.62 0.00 42.88 3.57
4384 5157 1.136197 TGCAAGACGGCGAATTTTACG 60.136 47.619 16.62 0.00 36.28 3.18
4385 5158 2.604969 TGCAAGACGGCGAATTTTAC 57.395 45.000 16.62 0.49 36.28 2.01
4386 5159 3.189495 TCATTGCAAGACGGCGAATTTTA 59.811 39.130 16.62 0.00 36.28 1.52
4387 5160 2.030363 TCATTGCAAGACGGCGAATTTT 60.030 40.909 16.62 0.00 36.28 1.82
4388 5161 1.539388 TCATTGCAAGACGGCGAATTT 59.461 42.857 16.62 1.14 36.28 1.82
4389 5162 1.164411 TCATTGCAAGACGGCGAATT 58.836 45.000 16.62 4.45 36.28 2.17
4390 5163 1.131126 CTTCATTGCAAGACGGCGAAT 59.869 47.619 16.62 0.00 36.28 3.34
4391 5164 0.516877 CTTCATTGCAAGACGGCGAA 59.483 50.000 16.62 0.00 36.28 4.70
4392 5165 1.298157 CCTTCATTGCAAGACGGCGA 61.298 55.000 16.62 0.00 36.28 5.54
4393 5166 1.135315 CCTTCATTGCAAGACGGCG 59.865 57.895 4.80 4.80 36.28 6.46
4394 5167 0.881118 TTCCTTCATTGCAAGACGGC 59.119 50.000 4.94 0.00 0.00 5.68
4395 5168 3.065371 GGTATTCCTTCATTGCAAGACGG 59.935 47.826 4.94 9.75 0.00 4.79
4396 5169 3.242413 CGGTATTCCTTCATTGCAAGACG 60.242 47.826 4.94 0.69 0.00 4.18
4397 5170 3.065371 CCGGTATTCCTTCATTGCAAGAC 59.935 47.826 4.94 0.00 0.00 3.01
4398 5171 3.278574 CCGGTATTCCTTCATTGCAAGA 58.721 45.455 4.94 0.00 0.00 3.02
4399 5172 3.016736 ACCGGTATTCCTTCATTGCAAG 58.983 45.455 4.49 0.00 0.00 4.01
4400 5173 2.752354 CACCGGTATTCCTTCATTGCAA 59.248 45.455 6.87 0.00 0.00 4.08
4401 5174 2.290641 ACACCGGTATTCCTTCATTGCA 60.291 45.455 6.87 0.00 0.00 4.08
4402 5175 2.365582 ACACCGGTATTCCTTCATTGC 58.634 47.619 6.87 0.00 0.00 3.56
4403 5176 5.183228 ACTTACACCGGTATTCCTTCATTG 58.817 41.667 6.87 0.00 0.00 2.82
4404 5177 5.431179 ACTTACACCGGTATTCCTTCATT 57.569 39.130 6.87 0.00 0.00 2.57
4405 5178 5.425630 GAACTTACACCGGTATTCCTTCAT 58.574 41.667 6.87 0.00 0.00 2.57
4406 5179 4.322953 GGAACTTACACCGGTATTCCTTCA 60.323 45.833 6.87 0.00 36.42 3.02
4407 5180 4.186926 GGAACTTACACCGGTATTCCTTC 58.813 47.826 6.87 5.86 36.42 3.46
4408 5181 3.583966 TGGAACTTACACCGGTATTCCTT 59.416 43.478 23.37 9.47 38.57 3.36
4409 5182 3.175594 TGGAACTTACACCGGTATTCCT 58.824 45.455 23.37 5.07 38.57 3.36
4410 5183 3.615224 TGGAACTTACACCGGTATTCC 57.385 47.619 6.87 15.69 38.38 3.01
4411 5184 5.945466 TTTTGGAACTTACACCGGTATTC 57.055 39.130 6.87 6.48 0.00 1.75
4412 5185 5.336134 GCATTTTGGAACTTACACCGGTATT 60.336 40.000 6.87 0.00 0.00 1.89
4413 5186 4.157105 GCATTTTGGAACTTACACCGGTAT 59.843 41.667 6.87 0.00 0.00 2.73
4414 5187 3.502979 GCATTTTGGAACTTACACCGGTA 59.497 43.478 6.87 0.00 0.00 4.02
4415 5188 2.295070 GCATTTTGGAACTTACACCGGT 59.705 45.455 0.00 0.00 0.00 5.28
4416 5189 2.294791 TGCATTTTGGAACTTACACCGG 59.705 45.455 0.00 0.00 0.00 5.28
4417 5190 3.634568 TGCATTTTGGAACTTACACCG 57.365 42.857 0.00 0.00 0.00 4.94
4418 5191 5.276631 CGTTTTGCATTTTGGAACTTACACC 60.277 40.000 0.00 0.00 0.00 4.16
4419 5192 5.517054 TCGTTTTGCATTTTGGAACTTACAC 59.483 36.000 0.00 0.00 0.00 2.90
4420 5193 5.651530 TCGTTTTGCATTTTGGAACTTACA 58.348 33.333 0.00 0.00 0.00 2.41
4421 5194 6.292114 CCTTCGTTTTGCATTTTGGAACTTAC 60.292 38.462 0.00 0.00 0.00 2.34
4422 5195 5.751028 CCTTCGTTTTGCATTTTGGAACTTA 59.249 36.000 0.00 0.00 0.00 2.24
4423 5196 4.570369 CCTTCGTTTTGCATTTTGGAACTT 59.430 37.500 0.00 0.00 0.00 2.66
4424 5197 4.119136 CCTTCGTTTTGCATTTTGGAACT 58.881 39.130 0.00 0.00 0.00 3.01
4425 5198 4.116238 TCCTTCGTTTTGCATTTTGGAAC 58.884 39.130 0.00 0.00 0.00 3.62
4426 5199 4.392921 TCCTTCGTTTTGCATTTTGGAA 57.607 36.364 0.00 0.00 0.00 3.53
4427 5200 4.392921 TTCCTTCGTTTTGCATTTTGGA 57.607 36.364 0.00 0.00 0.00 3.53
4428 5201 5.120053 GGTATTCCTTCGTTTTGCATTTTGG 59.880 40.000 0.00 0.00 0.00 3.28
4429 5202 5.925969 AGGTATTCCTTCGTTTTGCATTTTG 59.074 36.000 0.00 0.00 42.12 2.44
4430 5203 6.096673 AGGTATTCCTTCGTTTTGCATTTT 57.903 33.333 0.00 0.00 42.12 1.82
4431 5204 5.722021 AGGTATTCCTTCGTTTTGCATTT 57.278 34.783 0.00 0.00 42.12 2.32
4432 5205 5.357032 CCTAGGTATTCCTTCGTTTTGCATT 59.643 40.000 0.00 0.00 42.12 3.56
4433 5206 4.881850 CCTAGGTATTCCTTCGTTTTGCAT 59.118 41.667 0.00 0.00 42.12 3.96
4434 5207 4.258543 CCTAGGTATTCCTTCGTTTTGCA 58.741 43.478 0.00 0.00 42.12 4.08
4435 5208 4.094442 CACCTAGGTATTCCTTCGTTTTGC 59.906 45.833 15.80 0.00 42.12 3.68
4436 5209 5.243207 ACACCTAGGTATTCCTTCGTTTTG 58.757 41.667 15.80 0.00 42.12 2.44
4437 5210 5.494390 ACACCTAGGTATTCCTTCGTTTT 57.506 39.130 15.80 0.00 42.12 2.43
4438 5211 6.212187 ACTTACACCTAGGTATTCCTTCGTTT 59.788 38.462 15.80 0.00 42.12 3.60
4439 5212 5.718607 ACTTACACCTAGGTATTCCTTCGTT 59.281 40.000 15.80 0.00 42.12 3.85
4440 5213 5.267587 ACTTACACCTAGGTATTCCTTCGT 58.732 41.667 15.80 8.30 42.12 3.85
4441 5214 5.848833 ACTTACACCTAGGTATTCCTTCG 57.151 43.478 15.80 1.68 42.12 3.79
4442 5215 6.155737 TGGAACTTACACCTAGGTATTCCTTC 59.844 42.308 25.87 18.98 42.12 3.46
4443 5216 6.027482 TGGAACTTACACCTAGGTATTCCTT 58.973 40.000 25.87 14.00 42.12 3.36
4445 5218 5.945144 TGGAACTTACACCTAGGTATTCC 57.055 43.478 15.80 20.29 34.88 3.01
4446 5219 8.674607 CATTTTGGAACTTACACCTAGGTATTC 58.325 37.037 15.80 12.70 0.00 1.75
4447 5220 7.122204 GCATTTTGGAACTTACACCTAGGTATT 59.878 37.037 15.80 7.30 0.00 1.89
4448 5221 6.602009 GCATTTTGGAACTTACACCTAGGTAT 59.398 38.462 15.80 5.85 0.00 2.73
4449 5222 5.941647 GCATTTTGGAACTTACACCTAGGTA 59.058 40.000 15.80 0.00 0.00 3.08
4450 5223 4.765339 GCATTTTGGAACTTACACCTAGGT 59.235 41.667 9.21 9.21 0.00 3.08
4451 5224 4.157840 GGCATTTTGGAACTTACACCTAGG 59.842 45.833 7.41 7.41 0.00 3.02
4452 5225 4.142687 CGGCATTTTGGAACTTACACCTAG 60.143 45.833 0.00 0.00 0.00 3.02
4453 5226 3.754323 CGGCATTTTGGAACTTACACCTA 59.246 43.478 0.00 0.00 0.00 3.08
4454 5227 2.556622 CGGCATTTTGGAACTTACACCT 59.443 45.455 0.00 0.00 0.00 4.00
4455 5228 2.352323 CCGGCATTTTGGAACTTACACC 60.352 50.000 0.00 0.00 0.00 4.16
4456 5229 2.295070 ACCGGCATTTTGGAACTTACAC 59.705 45.455 0.00 0.00 0.00 2.90
4457 5230 2.294791 CACCGGCATTTTGGAACTTACA 59.705 45.455 0.00 0.00 0.00 2.41
4458 5231 2.924880 GCACCGGCATTTTGGAACTTAC 60.925 50.000 0.00 0.00 40.72 2.34
4459 5232 1.271102 GCACCGGCATTTTGGAACTTA 59.729 47.619 0.00 0.00 40.72 2.24
4460 5233 0.033366 GCACCGGCATTTTGGAACTT 59.967 50.000 0.00 0.00 40.72 2.66
4461 5234 1.665442 GCACCGGCATTTTGGAACT 59.335 52.632 0.00 0.00 40.72 3.01
4462 5235 1.732683 CGCACCGGCATTTTGGAAC 60.733 57.895 0.00 0.00 41.24 3.62
4463 5236 1.247419 ATCGCACCGGCATTTTGGAA 61.247 50.000 0.00 0.00 41.24 3.53
4464 5237 1.677300 ATCGCACCGGCATTTTGGA 60.677 52.632 0.00 0.00 41.24 3.53
4465 5238 1.516821 CATCGCACCGGCATTTTGG 60.517 57.895 0.00 0.00 41.24 3.28
4466 5239 0.798009 GTCATCGCACCGGCATTTTG 60.798 55.000 0.00 0.00 41.24 2.44
4467 5240 1.506262 GTCATCGCACCGGCATTTT 59.494 52.632 0.00 0.00 41.24 1.82
4468 5241 2.406616 GGTCATCGCACCGGCATTT 61.407 57.895 0.00 0.00 41.24 2.32
4469 5242 2.824041 GGTCATCGCACCGGCATT 60.824 61.111 0.00 0.00 41.24 3.56
4498 5271 1.291132 TCGTCATTTGTTGTGTCGCA 58.709 45.000 0.00 0.00 0.00 5.10
4501 5274 3.550030 CCCCTTTCGTCATTTGTTGTGTC 60.550 47.826 0.00 0.00 0.00 3.67
4517 5290 1.064166 CAGCCATGATCACTCCCCTTT 60.064 52.381 0.00 0.00 0.00 3.11
4551 5324 4.899502 TGTTGGTTTCAAGCAAGGAAAAA 58.100 34.783 4.42 0.00 45.80 1.94
4563 5336 6.058833 TGAGCAAGTACTATTGTTGGTTTCA 58.941 36.000 0.00 0.00 32.25 2.69
4565 5338 6.062095 ACTGAGCAAGTACTATTGTTGGTTT 58.938 36.000 0.00 0.00 37.36 3.27
4566 5339 5.621193 ACTGAGCAAGTACTATTGTTGGTT 58.379 37.500 0.00 0.00 37.36 3.67
4567 5340 5.228945 ACTGAGCAAGTACTATTGTTGGT 57.771 39.130 0.00 0.00 37.36 3.67
4568 5341 6.373779 CAAACTGAGCAAGTACTATTGTTGG 58.626 40.000 0.00 0.00 38.56 3.77
4569 5342 5.853282 GCAAACTGAGCAAGTACTATTGTTG 59.147 40.000 0.00 0.00 38.56 3.33
4570 5343 5.765182 AGCAAACTGAGCAAGTACTATTGTT 59.235 36.000 0.00 0.00 38.56 2.83
4604 5377 1.565156 TTAGTGCGTTGCAAGGCTCG 61.565 55.000 35.60 21.23 41.47 5.03
4608 5381 2.774439 AAGTTTAGTGCGTTGCAAGG 57.226 45.000 14.70 14.70 41.47 3.61
4611 5384 9.549509 CTTATTAAATAAGTTTAGTGCGTTGCA 57.450 29.630 0.00 0.00 37.91 4.08
4652 5425 8.446394 AGATCATGATCTAATCCAAATGGAAGT 58.554 33.333 32.26 6.40 45.84 3.01
4653 5426 8.865420 AGATCATGATCTAATCCAAATGGAAG 57.135 34.615 32.26 0.47 45.84 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.